Psyllid ID: psy17820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH
Secondary Structure (PSIPRED)
cccccccccEEEEEEEcccccccEEEEEEEcccEEEEEEEccccccEEEcccccccccccEEEEEEccccEEEEEEccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEcccEEEEEEccccccccEEEEcccEEEEEEcccccccccccccccEEEEEEEcccccccEEEccccEEEEEcccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccEEEEEEEEEccEEEEEccccccccccccccccccccEEEEEEEEEccEEEEEccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEEccEEEEEcccccccccEEEEccccEEEEEcccccccEEEEEcccccccccEEEcccccEEEccccEEEEEcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhtffnpdkegwlwkqggrykswkRRWFILNDKCLYYFeyttdksaclienssgrykswKRRWFILNDKCLYyfeyttdkpfkipeddgndlmhtffnpdkegwlwkqggrykswkRRWFILNDKCLYYfeyttdkeprgiipleniqvrevhdrhkphcfelfTSGFEFIKacktdsegkvvegkHTVYRMSAATAEEKDEWIKCLSLH
Flexible Loop (DISEMBL)
mhtffnpdkegwlwkqggrykswkrRWFILNDKCLYYFEYTtdksaclienssgrykswkrrWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTffnpdkegwlwKQGGRYKSWKRRWFILNDKCLYYFEyttdkeprgiiPLENIQVREVHDRHKPHCFELFTSGFEFIKACKtdsegkvvegkHTVYRmsaataeekdewikclslh
Low Complexity Region (SEG)
MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH
Disordered region (IsUnstruct)
********KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAA******EWIKC****
Disordered Region (DISOPRED)
*HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK************KSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH
Disordered Region (DISEMBL)
MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH
Disordered Region (DISPRO)
**TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q76MY7	399	Cytohesin-2 OS=Chlorocebu	N/A	N/A	0.642	0.338	0.686	8e-54
Q15438	398	Cytohesin-1 OS=Homo sapie	yes	N/A	0.638	0.336	0.700	9e-54
Q76MZ1	398	Cytohesin-1 OS=Chlorocebu	N/A	N/A	0.638	0.336	0.700	9e-54
P97694	398	Cytohesin-1 OS=Rattus nor	yes	N/A	0.638	0.336	0.693	2e-53
Q9QX11	398	Cytohesin-1 OS=Mus muscul	yes	N/A	0.638	0.336	0.693	2e-53
O08967	399	Cytohesin-3 OS=Mus muscul	no	N/A	0.638	0.335	0.676	4e-53
P63034	400	Cytohesin-2 OS=Mus muscul	no	N/A	0.857	0.45	0.533	6e-53
P63035	400	Cytohesin-2 OS=Rattus nor	no	N/A	0.857	0.45	0.533	8e-53
Q99418	400	Cytohesin-2 OS=Homo sapie	no	N/A	0.642	0.337	0.681	2e-52
P97696	400	Cytohesin-3 OS=Rattus nor	no	N/A	0.638	0.335	0.671	9e-52

>sp|Q76MY7|CYH2_CHLAE Cytohesin-2 OS=Chlorocebus aethiops GN=CYTH2 PE=2 SV=1

 Score =  209 bits (533), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 111/137 (81%), Gaps = 2/137 (1%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
           ++   ++PFKIPEDDGNDL HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct: 235 YDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 294

Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYR 191
           TDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR
Sbjct: 295 TDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYR 354

Query: 192 MSAATAEEKDEWIKCLS 208
           +SA T EEKDEWIK + 
Sbjct: 355 ISAPTQEEKDEWIKSIQ 371

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.
Chlorocebus aethiops (taxid: 9534)

>sp|Q15438|CYH1_HUMAN Cytohesin-1 OS=Homo sapiens GN=CYTH1 PE=1 SV=1

 Score =  209 bits (533), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 113/137 (82%), Gaps = 3/137 (2%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct: 236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query: 133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVY 190
           TTDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG HTVY
Sbjct: 296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query: 191 RMSAATAEEKDEWIKCL 207
           R+SA T EEK+EWIKC+
Sbjct: 356 RISAPTPEEKEEWIKCI 372

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Homo sapiens (taxid: 9606)

>sp|Q76MZ1|CYH1_CHLAE Cytohesin-1 OS=Chlorocebus aethiops GN=CYTH1 PE=2 SV=1

 Score =  209 bits (533), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 113/137 (82%), Gaps = 3/137 (2%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct: 236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query: 133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVY 190
           TTDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG HTVY
Sbjct: 296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query: 191 RMSAATAEEKDEWIKCL 207
           R+SA T EEK+EWIKC+
Sbjct: 356 RISAPTPEEKEEWIKCI 372

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Chlorocebus aethiops (taxid: 9534)

>sp|P97694|CYH1_RAT Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 113/137 (82%), Gaps = 3/137 (2%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct: 236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query: 133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVY 190
           TTDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG HTVY
Sbjct: 296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query: 191 RMSAATAEEKDEWIKCL 207
           R+SA T EEK++WIKC+
Sbjct: 356 RISAPTPEEKEDWIKCI 372

Promotes guanine-nucleotide exchange on ARF6. Promotes the activation of ARF6 through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q9QX11|CYH1_MOUSE Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=2 SV=2

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 113/137 (82%), Gaps = 3/137 (2%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct: 236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query: 133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVY 190
           TTDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG HTVY
Sbjct: 296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query: 191 RMSAATAEEKDEWIKCL 207
           R+SA T EEK++WIKC+
Sbjct: 356 RISAPTPEEKEDWIKCI 372

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|O08967|CYH3_MOUSE Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1

 Score =  207 bits (527), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 111/136 (81%), Gaps = 2/136 (1%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct: 240 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 299

Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYR 191
           TDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR
Sbjct: 300 TDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 359

Query: 192 MSAATAEEKDEWIKCL 207
           +SA + EEK+EW+K +
Sbjct: 360 ISAPSPEEKEEWMKSI 375

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|P63034|CYH2_MOUSE Cytohesin-2 OS=Mus musculus GN=Cyth2 PE=1 SV=2

 Score =  207 bits (526), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 126/195 (64%), Gaps = 15/195 (7%)

Query: 28  FILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN-----------DKCLYYFEY 76
           F   D C Y   +        + N + R K    R+  +N           D     ++ 
Sbjct: 179 FQSTDTC-YVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEDLLRNLYDS 237

Query: 77  TTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTD 135
             ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEYTTD
Sbjct: 238 IRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLAGGRVKTWKRRWFILTDNCLYYFEYTTD 297

Query: 136 KEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMS 193
           KEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR+S
Sbjct: 298 KEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRIS 357

Query: 194 AATAEEKDEWIKCLS 208
           A T EEKDEWIK + 
Sbjct: 358 APTQEEKDEWIKSIQ 372

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Mus musculus (taxid: 10090)

>sp|P63035|CYH2_RAT Cytohesin-2 OS=Rattus norvegicus GN=Cyth2 PE=1 SV=1

 Score =  206 bits (524), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 126/195 (64%), Gaps = 15/195 (7%)

Query: 28  FILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN-----------DKCLYYFEY 76
           F   D C Y   +        + N + R K    R+  +N           D     ++ 
Sbjct: 179 FQSTDTC-YVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEDLLRNLYDS 237

Query: 77  TTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTD 135
             ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEYTTD
Sbjct: 238 IRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTD 297

Query: 136 KEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMS 193
           KEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR+S
Sbjct: 298 KEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRIS 357

Query: 194 AATAEEKDEWIKCLS 208
           A T EEKDEWIK + 
Sbjct: 358 APTQEEKDEWIKSIQ 372

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q99418|CYH2_HUMAN Cytohesin-2 OS=Homo sapiens GN=CYTH2 PE=1 SV=2

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/138 (68%), Positives = 111/138 (80%), Gaps = 3/138 (2%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
           ++   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct: 235 YDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 294

Query: 133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVY 190
           TTDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VY
Sbjct: 295 TTDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVY 354

Query: 191 RMSAATAEEKDEWIKCLS 208
           R+SA T EEKDEWIK + 
Sbjct: 355 RISAPTQEEKDEWIKSIQ 372

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|P97696|CYH3_RAT Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=1

 Score =  203 bits (516), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 111/137 (81%), Gaps = 3/137 (2%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct: 240 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 299

Query: 133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVY 190
           TTDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VY
Sbjct: 300 TTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVY 359

Query: 191 RMSAATAEEKDEWIKCL 207
           R+SA + EEK+EW+K +
Sbjct: 360 RISAPSPEEKEEWMKSI 376

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
307167289	441	Cytohesin-1 [Camponotus floridanus]	0.652	0.310	0.868	2e-68
380019731	434	PREDICTED: cytohesin-1-like isoform 1 [A	0.652	0.315	0.868	4e-68
340716420	434	PREDICTED: cytohesin-1-like isoform 1 [B	0.652	0.315	0.868	4e-68
350424580	414	PREDICTED: cytohesin-1-like [Bombus impa	0.895	0.454	0.645	4e-68
340716422	418	PREDICTED: cytohesin-1-like isoform 2 [B	0.895	0.449	0.645	4e-68
383860355	434	PREDICTED: cytohesin-1-like [Megachile r	0.652	0.315	0.868	5e-68
345497545	436	PREDICTED: cytohesin-1-like [Nasonia vit	0.652	0.314	0.868	5e-68
332028459	333	Cytohesin-1 [Acromyrmex echinatior]	0.638	0.402	0.888	1e-67
307206275	324	Cytohesin-1 [Harpegnathos saltator]	0.895	0.580	0.64	4e-67
242024260	371	Cytohesin-1, putative [Pediculus humanus	0.895	0.506	0.63	4e-67

>gi|307167289|gb|EFN60957.1| Cytohesin-1 [Camponotus floridanus]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query: 71  LYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
           +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYF
Sbjct: 276 VSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYF 335

Query: 131 EYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 190
           EYTTDKEPRGIIPLENIQVRE+ DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKHTVY
Sbjct: 336 EYTTDKEPRGIIPLENIQVREIQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKHTVY 395

Query: 191 RMSAATAEEKDEWIKCL 207
           RMSAAT EEKDEWIKC+
Sbjct: 396 RMSAATDEEKDEWIKCV 412

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019731|ref|XP_003693756.1| PREDICTED: cytohesin-1-like isoform 1 [Apis florea]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query: 71  LYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
           +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYF
Sbjct: 269 VSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYF 328

Query: 131 EYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 190
           EYTTDKEPRGIIPLENIQVREV DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKHTVY
Sbjct: 329 EYTTDKEPRGIIPLENIQVREVQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKHTVY 388

Query: 191 RMSAATAEEKDEWIKCL 207
           RMSAAT EEK+EWIKC+
Sbjct: 389 RMSAATDEEKEEWIKCV 405

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716420|ref|XP_003396696.1| PREDICTED: cytohesin-1-like isoform 1 [Bombus terrestris]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query: 71  LYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
           +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYF
Sbjct: 269 VSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYF 328

Query: 131 EYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 190
           EYTTDKEPRGIIPLENIQVREV DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKHTVY
Sbjct: 329 EYTTDKEPRGIIPLENIQVREVQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKHTVY 388

Query: 191 RMSAATAEEKDEWIKCL 207
           RMSAAT EEK+EWIKC+
Sbjct: 389 RMSAATDEEKEEWIKCV 405

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424580|ref|XP_003493843.1| PREDICTED: cytohesin-1-like [Bombus impatiens]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 143/200 (71%), Gaps = 12/200 (6%)

Query: 19  RYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN----------- 67
           RY       F   D C Y   +        + N S + K    ++  +N           
Sbjct: 187 RYCQLNPNIFTNTDTC-YVLSFAIIMLNTSLHNPSVKDKPSVEQFISMNRGINNGGDLPR 245

Query: 68  DKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCL 127
           +  +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CL
Sbjct: 246 ELLVSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCL 305

Query: 128 YYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 187
           YYFEYTTDKEPRGIIPLENIQVREV DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKH
Sbjct: 306 YYFEYTTDKEPRGIIPLENIQVREVQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKH 365

Query: 188 TVYRMSAATAEEKDEWIKCL 207
           TVYRMSAAT EEK+EWIKC+
Sbjct: 366 TVYRMSAATDEEKEEWIKCV 385

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716422|ref|XP_003396697.1| PREDICTED: cytohesin-1-like isoform 2 [Bombus terrestris] gi|380019733|ref|XP_003693757.1| PREDICTED: cytohesin-1-like isoform 2 [Apis florea]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 143/200 (71%), Gaps = 12/200 (6%)

Query: 19  RYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN----------- 67
           RY       F   D C Y   +        + N S + K    ++  +N           
Sbjct: 191 RYCQLNPNIFTNTDTC-YVLSFAIIMLNTSLHNPSVKDKPSVEQFISMNRGINNGGDLPR 249

Query: 68  DKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCL 127
           +  +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CL
Sbjct: 250 ELLVSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCL 309

Query: 128 YYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 187
           YYFEYTTDKEPRGIIPLENIQVREV DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKH
Sbjct: 310 YYFEYTTDKEPRGIIPLENIQVREVQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKH 369

Query: 188 TVYRMSAATAEEKDEWIKCL 207
           TVYRMSAAT EEK+EWIKC+
Sbjct: 370 TVYRMSAATDEEKEEWIKCV 389

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860355|ref|XP_003705656.1| PREDICTED: cytohesin-1-like [Megachile rotundata]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query: 71  LYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
           +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYF
Sbjct: 269 VSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYF 328

Query: 131 EYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 190
           EYTTDKEPRGIIPLENIQVREV DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKHTVY
Sbjct: 329 EYTTDKEPRGIIPLENIQVREVQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKHTVY 388

Query: 191 RMSAATAEEKDEWIKCL 207
           RMSAAT EEK+EWIKC+
Sbjct: 389 RMSAATDEEKEEWIKCV 405

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497545|ref|XP_001600284.2| PREDICTED: cytohesin-1-like [Nasonia vitripennis]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query: 71  LYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
           +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYF
Sbjct: 271 VSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYF 330

Query: 131 EYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVY 190
           EYTTDKEPRGIIPLENIQVREV DR+KPHCFEL+ +G EFIKACKTDSEGKVVEGKHTVY
Sbjct: 331 EYTTDKEPRGIIPLENIQVREVQDRNKPHCFELYAAGTEFIKACKTDSEGKVVEGKHTVY 390

Query: 191 RMSAATAEEKDEWIKCL 207
           RMSAAT EEKDEWIKC+
Sbjct: 391 RMSAATNEEKDEWIKCV 407

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028459|gb|EGI68502.1| Cytohesin-1 [Acromyrmex echinatior]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/134 (88%), Positives = 125/134 (93%)

Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
           +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYFEYT
Sbjct: 171 YESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYFEYT 230

Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMS 193
           TDKEPRGIIPLENIQVRE+ DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKHTVYRMS
Sbjct: 231 TDKEPRGIIPLENIQVREIQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKHTVYRMS 290

Query: 194 AATAEEKDEWIKCL 207
           AAT EEKDEWIKC+
Sbjct: 291 AATDEEKDEWIKCV 304

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206275|gb|EFN84340.1| Cytohesin-1 [Harpegnathos saltator]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 143/200 (71%), Gaps = 12/200 (6%)

Query: 19  RYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN----------- 67
           RY       F   D C Y   +        + N S + K    ++  +N           
Sbjct: 97  RYCQLNPNIFTNTDTC-YVLSFAIIMLNTSLHNPSVKDKPSVEQFISMNRGINNGGDLPR 155

Query: 68  DKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCL 127
           +  +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CL
Sbjct: 156 ELLVSLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCL 215

Query: 128 YYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 187
           YYFEYTTDKEPRGIIPLENIQVRE+ DRHKPHCFEL+ +G EFIKACKTDSEGKVVEGKH
Sbjct: 216 YYFEYTTDKEPRGIIPLENIQVREIQDRHKPHCFELYAAGSEFIKACKTDSEGKVVEGKH 275

Query: 188 TVYRMSAATAEEKDEWIKCL 207
           TVYRMSAAT EEK+EWIKC+
Sbjct: 276 TVYRMSAATDEEKEEWIKCV 295

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024260|ref|XP_002432546.1| Cytohesin-1, putative [Pediculus humanus corporis] gi|212518006|gb|EEB19808.1| Cytohesin-1, putative [Pediculus humanus corporis]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 143/200 (71%), Gaps = 12/200 (6%)

Query: 19  RYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN----------- 67
           RY       F   D C Y   +        + N S + K    ++  +N           
Sbjct: 141 RYCQLNPNIFTNPDTC-YVLSFAVIMLNTSLHNPSVKDKPSAEQFISMNRGINNGGDLNK 199

Query: 68  DKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCL 127
           +  +  +E    +PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CL
Sbjct: 200 ELLISLYESIKTEPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCL 259

Query: 128 YYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH 187
           YYFEYTTDKEPRGIIPLENIQVRE  DRHKPHCFEL+ +G +FIKACKTDSEGKVVEGKH
Sbjct: 260 YYFEYTTDKEPRGIIPLENIQVREASDRHKPHCFELYATGTDFIKACKTDSEGKVVEGKH 319

Query: 188 TVYRMSAATAEEKDEWIKCL 207
           TVYRMSAATA+EK++WIKC+
Sbjct: 320 TVYRMSAATADEKEDWIKCV 339

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
FB|FBgn0086779	727	step "steppke" [Drosophila mel	0.642	0.185	0.838	5.4e-63
UNIPROTKB|B7Z1T4	339	CYTH1 "Cytohesin-1" [Homo sapi	0.638	0.395	0.700	3.5e-52
UNIPROTKB|Q15438	398	CYTH1 "Cytohesin-1" [Homo sapi	0.638	0.336	0.700	3.5e-52
UNIPROTKB|F1PKP6	400	CYTH1 "Uncharacterized protein	0.638	0.335	0.700	3.5e-52
UNIPROTKB|F1RZ72	398	CYTH1 "Uncharacterized protein	0.638	0.336	0.700	5.6e-52
UNIPROTKB|F1P496	386	CYTH3 "Uncharacterized protein	0.638	0.347	0.691	7.2e-52
MGI|MGI:1334257	398	Cyth1 "cytohesin 1" [Mus muscu	0.638	0.336	0.693	7.2e-52
RGD|620397	398	Cyth1 "cytohesin 1" [Rattus no	0.638	0.336	0.693	7.2e-52
UNIPROTKB|P97694	398	Cyth1 "Cytohesin-1" [Rattus no	0.638	0.336	0.693	7.2e-52
UNIPROTKB|F1RL83	399	CYTH2 "Uncharacterized protein	0.638	0.335	0.691	1.2e-51

FB|FBgn0086779 step "steppke" [Drosophila melanogaster (taxid:7227)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 114/136 (83%), Positives = 122/136 (89%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
             +E    +PFKIP+DDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILND CLYYFEYT
Sbjct:   569 YESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYFEYT 628

Query:   134 TDKEPRGIIPLENIQVREVHDRHKPHCFELF-TSGFEFIKACKTDSEGKVVEGKHTVYRM 192
             TDKEPRGIIPLENI VRE+HDR KPHCFELF T G + IKACKTDSEGKVVEGKHTVYRM
Sbjct:   629 TDKEPRGIIPLENISVREIHDRSKPHCFELFATGGADIIKACKTDSEGKVVEGKHTVYRM 688

Query:   193 SAATAEEKDEWIKCLS 208
             SAAT E++ EWIK L+
Sbjct:   689 SAATEEDQQEWIKRLT 704

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=ISS;IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

UNIPROTKB|B7Z1T4 CYTH1 "Cytohesin-1" [Homo sapiens (taxid:9606)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 96/137 (70%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GG R K+WKRRWFIL D CLYYFEY
Sbjct:   177 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 236

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG HTVY
Sbjct:   237 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 296

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA T EEK+EWIKC+
Sbjct:   297 RISAPTPEEKEEWIKCI 313

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

UNIPROTKB|Q15438 CYTH1 "Cytohesin-1" [Homo sapiens (taxid:9606)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 96/137 (70%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GG R K+WKRRWFIL D CLYYFEY
Sbjct:   236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG HTVY
Sbjct:   296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA T EEK+EWIKC+
Sbjct:   356 RISAPTPEEKEEWIKCI 372

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030155 "regulation of cell adhesion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1PKP6 CYTH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 96/137 (70%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQ-GGRYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct:   238 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLVGGRVKTWKRRWFILTDNCLYYFEY 297

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG HTVY
Sbjct:   298 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 357

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA T EEK+EWIKC+
Sbjct:   358 RISAPTPEEKEEWIKCI 374

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1RZ72 CYTH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 96/137 (70%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEY
Sbjct:   236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLAGGRVKTWKRRWFILTDNCLYYFEY 295

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   S  + IKACKT+++G+VVEG HTVY
Sbjct:   296 TTDKEPRGIIPLENLGIREVEDSKKPNCFELYIPDSKDQVIKACKTEADGRVVEGNHTVY 355

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA + EEK+EWIKC+
Sbjct:   356 RISAPSPEEKEEWIKCI 372

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1P496 CYTH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 94/136 (69%), Positives = 111/136 (81%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct:   227 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 286

Query:   134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYR 191
             TDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR
Sbjct:   287 TDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 346

Query:   192 MSAATAEEKDEWIKCL 207
             +SA T EEK+EWIK +
Sbjct:   347 ISAPTPEEKEEWIKSI 362

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

MGI|MGI:1334257 Cyth1 "cytohesin 1" [Mus musculus (taxid:10090)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 95/137 (69%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GG R K+WKRRWFIL D CLYYFEY
Sbjct:   236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG HTVY
Sbjct:   296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA T EEK++WIKC+
Sbjct:   356 RISAPTPEEKEDWIKCI 372

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005923 "tight junction" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IMP

RGD|620397 Cyth1 "cytohesin 1" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 95/137 (69%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GG R K+WKRRWFIL D CLYYFEY
Sbjct:   236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG HTVY
Sbjct:   296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA T EEK++WIKC+
Sbjct:   356 RISAPTPEEKEDWIKCI 372

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0005886 "plasma membrane" evidence=ISO;ISS;IBA

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=ISO;IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA;ISO

UNIPROTKB|P97694 Cyth1 "Cytohesin-1" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 95/137 (69%), Positives = 114/137 (83%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEY 132
             +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GG R K+WKRRWFIL D CLYYFEY
Sbjct:   236 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEY 295

Query:   133 TTDKEPRGIIPLENIQVREVHDRHKPHCFELFT--SGFEFIKACKTDSEGKVVEGKHTVY 190
             TTDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG HTVY
Sbjct:   296 TTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVY 355

Query:   191 RMSAATAEEKDEWIKCL 207
             R+SA T EEK++WIKC+
Sbjct:   356 RISAPTPEEKEDWIKCI 372

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|F1RL83 CYTH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 94/136 (69%), Positives = 112/136 (82%)

Query:    74 FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
             ++   ++PFKIPEDDGNDL HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct:   235 YDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 294

Query:   134 TDKEPRGIIPLENIQVREVHDRHKPHCFELF--TSGFEFIKACKTDSEGKVVEGKHTVYR 191
             TDKEPRGIIPLEN+ +REV D  KP+CFEL+   +  + IKACKT+++G+VVEG H VYR
Sbjct:   295 TDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYR 354

Query:   192 MSAATAEEKDEWIKCL 207
             +SA T EEKDEWIK +
Sbjct:   355 ISAPTQEEKDEWIKSI 370

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15438	CYH1_HUMAN	No assigned EC number	0.7007	0.6380	0.3366	yes	N/A
Q9QX11	CYH1_MOUSE	No assigned EC number	0.6934	0.6380	0.3366	yes	N/A
P97694	CYH1_RAT	No assigned EC number	0.6934	0.6380	0.3366	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	210
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	1e-75
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	3e-26
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	2e-23
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	9e-20
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	1e-16
pfam00169	101	pfam00169, PH, PH domain	2e-15
smart00233	102	smart00233, PH, Pleckstrin homology domain	2e-15
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	7e-15
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	1e-14
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	9e-14
cd13260	103	cd13260, PH_RASA1, RAS p21 protein activator (GTPa	2e-13
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	5e-13
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	2e-12
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	4e-11
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	5e-11
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	7e-11
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	9e-11
cd13302	109	cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin	2e-10
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	2e-10
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	3e-10
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	4e-10
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	7e-10
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	1e-09
cd13253	93	cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, anky	2e-09
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	4e-09
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	5e-09
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	7e-09
cd13379	114	cd13379, PH_RhoGap24, Rho GTPase activating protei	8e-08
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	1e-07
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	1e-07
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	1e-07
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	1e-07
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	2e-07
cd01241	121	cd01241, PH_PKB, Protein Kinase B-like pleckstrin	2e-07
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	2e-07
cd13309	103	cd13309, PH_SKIP, SifA and kinesin-interacting pro	2e-07
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	3e-07
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	5e-07
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	6e-07
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	7e-07
cd01233	111	cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein p	8e-07
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	9e-07
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	1e-06
cd13299	102	cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin	1e-06
cd01241	121	cd01241, PH_PKB, Protein Kinase B-like pleckstrin	2e-06
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	3e-06
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	3e-06
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	4e-06
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	5e-06
cd01263	119	cd01263, PH_anillin, Anillin Pleckstrin homology (	5e-06
cd13252	125	cd13252, PH1_ADAP, ArfGAP with dual PH domains Ple	6e-06
pfam00169	101	pfam00169, PH, PH domain	7e-06
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	8e-06
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	1e-05
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	2e-05
cd13279	91	cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) d	3e-05
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	3e-05
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	4e-05
cd13379	114	cd13379, PH_RhoGap24, Rho GTPase activating protei	5e-05
cd01218	123	cd01218, PH_Phafin2-like, Phafin2 (also called EAP	6e-05
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	7e-05
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	7e-05
smart00233	102	smart00233, PH, Pleckstrin homology domain	8e-05
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	9e-05
cd01244	107	cd01244, PH_GAP1-like, RAS p21 protein activator (	9e-05
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	1e-04
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	1e-04
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	1e-04
cd13278	139	cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) do	2e-04
cd13293	88	cd13293, PH_CpORP2-like, Cryptosporidium-like Oxys	2e-04
cd01259	124	cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor p	3e-04
cd13380	106	cd13380, PH_Skap1, Src kinase-associated phosphopr	3e-04
cd13253	93	cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, anky	4e-04
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	4e-04
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	8e-04
cd13260	103	cd13260, PH_RASA1, RAS p21 protein activator (GTPa	9e-04
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	0.001
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	0.001
cd13266	106	cd13266, PH_Skap_family, Src kinase-associated pho	0.001
cd01257	106	cd01257, PH_IRS, Insulin receptor substrate (IRS)	0.001
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	0.002
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	0.002
cd13293	88	cd13293, PH_CpORP2-like, Cryptosporidium-like Oxys	0.002
cd13389	125	cd13389, PH1_FGD5_FGD6, FYVE, RhoGEF and PH domain	0.002
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	0.002
cd13292	103	cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol bin	0.002
cd13278	139	cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) do	0.003
cd13277	111	cd13277, PH_Bem3, Bud emergence protein 3 (Bem3) P	0.003
cd01239	127	cd01239, PH_PKD, Protein kinase D (PKD/PKCmu) plec	0.003
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	0.004
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	0.004
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	0.004
cd13275	103	cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interac	0.004
cd13275	103	cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interac	0.004
cd13284	99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	0.004
cd13284	99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	0.004

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score =  222 bits (569), Expect = 1e-75
 Identities = 86/111 (77%), Positives = 93/111 (83%)

Query: 97  FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
           FNPD+EGWL K GGR KSWKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ VREV D  
Sbjct: 1   FNPDREGWLLKLGGRVKSWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSVREVEDSK 60

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           KP CFEL++   E IKACKTDS+GKVVEG HTVYR+SAAT EE DEWIK +
Sbjct: 61  KPFCFELYSPSNEVIKACKTDSDGKVVEGNHTVYRISAATEEEMDEWIKSI 111

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 97.4 bits (243), Expect = 3e-26
 Identities = 34/40 (85%), Positives = 35/40 (87%)

Query: 5  FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          FNPD+EGWL K GGR KSWKRRWFIL D CLYYFEYTTDK
Sbjct: 1  FNPDREGWLLKLGGRVKSWKRRWFILTDNCLYYFEYTTDK 40

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 90.0 bits (224), Expect = 2e-23
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
             DKEG+LWK+G R  S+++RWF+L    L+YFE   D+EP G+I LE   V    D   
Sbjct: 7   PVDKEGYLWKKGERNTSYQKRWFVLKGNLLFYFEKKGDREPLGVIVLEGCTVELSEDEE- 65

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           P+ F +   G                      Y ++A + E+ + W+K LS
Sbjct: 66  PYAFAIRFDG-----------------PGSRSYVLAAESQEDMESWMKALS 99

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 80.5 bits (199), Expect = 9e-20
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 23/113 (20%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF-EYTTDKEPRGIIPLENIQVREVHDRH 156
           +P+K GWL KQGG  K+W+RRWF+L    L+YF +   D EPRG+I L +    +  +  
Sbjct: 6   DPEKAGWLTKQGGSIKTWRRRWFVLKQGKLFYFKDEDPDSEPRGVIDLSDCLTVKSAEEA 65

Query: 157 --KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             K   FE+ T                        + + A + +EK+EWI  +
Sbjct: 66  TNKEFAFEVSTP--------------------ERTFYLIADSEKEKEEWISAI 98

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 71.5 bits (176), Expect = 1e-16
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 23/116 (19%)

Query: 98  NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--- 153
                GWL KQGG   K+WK+RWF+L D CLYY++   +++  G I L +  +       
Sbjct: 6   PVVFSGWLHKQGGSGLKNWKKRWFVLKDNCLYYYKDPEEEKALGSILLPSYTISPASPSD 65

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
           + ++   F          KA           G  T Y  +A T EE ++W+K LSL
Sbjct: 66  EINRKFAF----------KAEH--------AGMRT-YYFAADTQEEMEQWMKALSL 102

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 25/113 (22%)

Query: 101 KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEY--TTDKEPRGIIPLENIQVREVHD--- 154
           KEGWL K+G    KSWK+R+F+L D  L Y++    +   P+G IPL   QV +V D   
Sbjct: 3   KEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLSGCQVTKVPDSED 62

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             + +CFE+ T                   G    + + A + EE+ EW+K +
Sbjct: 63  GKRKNCFEIRT-------------------GDRETFLLQAESEEERKEWVKAI 96

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 26/116 (22%)

Query: 99  PDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFE---YTTDKEPRGIIPLENIQVREVHD 154
             KEGWL+K+ G   KSWK+R+F+L +  L Y++        +P+G I L    VRE  D
Sbjct: 1   VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPD 60

Query: 155 R---HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                KPHCFE+ T                          + A + EE+++W++ L
Sbjct: 61  PDSSKKPHCFEIKT-------------------SDRKTLLLQAESEEEREKWVEAL 97

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 67.4 bits (165), Expect = 7e-15
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 99  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
             K GWL KQGG  K+W+RRWF+L    LYY++   + +P+G IPL    V+E+     P
Sbjct: 3   VIKSGWLKKQGGIVKNWQRRWFVLRGDQLYYYKDEDESKPQGCIPLPGNTVKELPF--NP 60

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
                F   FE I        G      H  Y + A +  E +EW+K
Sbjct: 61  EEPGKFL--FEIIPG----DGGTRRSANHDSYLLMANSQAEMEEWVK 101

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 66.6 bits (162), Expect = 1e-14
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 22/110 (20%)

Query: 101 KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLE-NIQVREVHDRH 156
           KEGWL K+GG+  KSWK+RWF+L D  L Y++   D  K+P+G+IPL   ++V  V    
Sbjct: 1   KEGWLKKRGGKGLKSWKKRWFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGLEVELVSSSG 60

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKC 206
           KP+CFEL T                    +   Y + A + EE++EW++ 
Sbjct: 61  KPNCFELVTP------------------DRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 64.7 bits (158), Expect = 9e-14
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 14/82 (17%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
           N  K G+  KQG   K+WKRR+FIL+D  + Y++  TDKEP   IPL     +EV   H+
Sbjct: 7   NVIKSGYCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEPLRTIPL-----KEVLKVHE 61

Query: 158 ---------PHCFELFTSGFEF 170
                     + FE+ T+   F
Sbjct: 62  CLSGDLLMRDNLFEIITTSRTF 83

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241414 cd13260, PH_RASA1, RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 20/116 (17%)

Query: 97  FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
               K+G+L K+ G+ K WK  +F+L   ++ LY+FE     +P+G+I L    V  VHD
Sbjct: 1   KGIVKKGYLLKKSGKNKKWKNLYFVLEGAEQHLYFFENEKRTKPKGLIDLSYSSVYPVHD 60

Query: 155 RH--KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +P+CF++                      + T+Y + A TAE   +W+K L 
Sbjct: 61  SLFGRPNCFQIVVRAL----------------NESTIYYLCADTAELAQDWMKALR 100

RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 30/113 (26%)

Query: 102 EGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQ-VREVHDRHKP 158
           EG+L+K+G   K WK+RWF+L      L Y+E   D + +G+I L+ ++ V         
Sbjct: 6   EGYLYKRGALLKGWKQRWFVLDLTKHQLRYYESKEDTKCKGVIDLQEVESVYPDTPSIGA 65

Query: 159 H-------CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
                    FEL T+                      VY   A +AE   +WI
Sbjct: 66  PKSPDPGAFFELKTNK--------------------RVYYFLAPSAEAAQQWI 98

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 21/109 (19%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRHKPH 159
           KEG+L KQGG  K+WK RWF+L    L YF+  TD +P   + L E   V+  + + KP+
Sbjct: 5   KEGYLTKQGGIVKNWKTRWFVLRKNELKYFKTRTDTKPIRTLDLTECSSVQADYSQGKPN 64

Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           CF L                          + M A T EE DEW+K L 
Sbjct: 65  CFRLVFPD--------------------RTFYMYAKTEEEADEWVKLLK 93

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
          +P+K GWL KQGG  K+W+RRWF+L    L+YF
Sbjct: 6  DPEKAGWLTKQGGSIKTWRRRWFVLKQGKLFYF 38

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 6  NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYF 38
               GWL KQGG   K+WK+RWF+L D CLYY+
Sbjct: 6  PVVFSGWLHKQGGSGLKNWKKRWFVLKDNCLYYY 39

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 56.9 bits (138), Expect = 7e-11
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
            DKEG+LWK+G R  S+++RWF+L    L+YFE   D+
Sbjct: 7  PVDKEGYLWKKGERNTSYQKRWFVLKGNLLFYFEKKGDR 45

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 24/109 (22%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKP 158
           K G+L K GG+ K+WKRRWF+L +  L+Y++   D  ++P+G I L      E+      
Sbjct: 1   KAGYLTKLGGKVKTWKRRWFVLKNGELFYYKSPNDVIRKPQGQIAL--DGSCEIARAEGA 58

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             FE+ T                    +   Y ++A +  + DEWI+ +
Sbjct: 59  QTFEIVT--------------------EKRTYYLTADSENDLDEWIRVI 87

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241456 cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 2

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R F+L D    L+Y++    ++P G I L    V  V D   P
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFVLRDDPAYLHYYDPAKGEDPLGAIHLRGCVVTAVEDNSNP 68

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
               +  + FE I A                Y + AAT  E+ EWIK
Sbjct: 69  AKGSVEGNLFEIITA------------DEVHYYLQAATPAERTEWIK 103

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 109

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 25/112 (22%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPR--GIIPLENIQ-VREVHDRHK 157
           K G+L K+G R K+WK+RWF+L    L Y  Y  DKE R   +I L +I    EV  +  
Sbjct: 8   KAGYLEKKGERRKTWKKRWFVLRPTKLAY--YKNDKEYRLLRLIDLTDIHTCTEVQLKKH 65

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
            + F + T                      T Y   A +  E + WI  ++L
Sbjct: 66  DNTFGIVTP-------------------ARTFYVQ-ADSKAEMESWISAINL 97

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           KEG+L K+G    +WK RWF+L +  L Y++  TD  P+G+I L+   +          C
Sbjct: 5   KEGFLVKKGHVVNNWKARWFVLLEDKLEYYKKKTDSSPKGMILLKGCTITS-------PC 57

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
            E       F          K+   K   + + A + EE+D W K
Sbjct: 58  LEYEKRPLVF----------KLTTAKGQDHFLQACSREERDAWAK 92

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 100 DKEGWLWKQGGRYK-SWKRRWFILNDKCLYYFEYTTDKEPRGIIPL----ENIQVREV-- 152
            KEG+L K G +    +++RWF L+D+ L YF+   D  P+G I +    E   VRE   
Sbjct: 3   LKEGYLEKTGPKQTDGFRKRWFTLDDRRLMYFKDPLDAFPKGEIFIGSKEEGYSVREGLP 62

Query: 153 --HDRHKPHCFELFTSGFEFIKACKTDSE 179
                H    F L T    F+ + +T+ E
Sbjct: 63  AGIKGHWGFGFTLVTPDRTFVLSAETEEE 91

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 26/111 (23%)

Query: 101 KEGWLWKQ-GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ---VREVHDRH 156
           KEG+L+K+    +K+WKRRWF + +  L Y      K+    + +E+++   V+   D  
Sbjct: 1   KEGYLFKRSSNAFKTWKRRWFSIQNGQLVY--QKRFKKDTPTVVVEDLRLCTVKPCEDID 58

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           +  CFE+ +                        Y + A + E++  WI+ +
Sbjct: 59  RRFCFEVVSP--------------------TKSYMLQAESEEDRQAWIQAI 89

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH---DRHK 157
           K GWL KQ    K+W++RWF+L    L+Y++   + +P+G I L+  QV E+    +   
Sbjct: 5   KAGWLKKQRSIMKNWQQRWFVLRGDQLFYYKDEEETKPQGCISLQGSQVNELPPNPEEPG 64

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
            H FE+   G           + + V   H  + + A +  + ++W+K +
Sbjct: 65  KHLFEILPGG---------AGDREKVPMNHEAFLLMANSQSDMEDWVKAI 105

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241407 cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 100 DKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREVHDRHK 157
            K GWL K   +    +++RW + +   L YF    +   +GIIPL +I  VR V D   
Sbjct: 1   TKSGWLDKLSPQGNYVFQKRWVVFDGDSLRYFNSEKEMYSKGIIPLSSIKTVRSVGDNK- 59

Query: 158 PHCFELFTSGFEFIKACKTDSE 179
              FE+ T    F+   +++ E
Sbjct: 60  ---FEVVTGNRTFVFRAESEDE 78

ARAP proteins (also called centaurin delta) are phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating proteins that modulate actin cytoskeleton remodeling by regulating ARF and RHO family members. They bind phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) and phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding. There are 3 mammalian ARAP proteins: ARAP1, ARAP2, and ARAP3. All ARAP proteins contain a N-terminal SAM (sterile alpha motif) domain, 5 PH domains, an ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a Ras-associating domain. This hierarchy contains the first PH domain in ARAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 93

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 101 KEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTDKE----------PRGIIPLENIQ 148
             G LWK+  G +   W +R+F+L +  L Y+  +  K+          P+G+IPL    
Sbjct: 14  LSGVLWKRPFGRQSAKWSKRFFVLKECFLLYYAESEKKDFEKTRRFNIHPKGVIPLGGCS 73

Query: 149 VREVHDRHKPHCFELFTSGF 168
           +    D  +P+CF +    F
Sbjct: 74  IEAGRDPGRPYCFLISHPDF 93

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 22/106 (20%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRHKPH 159
           K+G+LWK+G    +W+ RWF+L    L Y++    KE +G I L  N  V  + DR    
Sbjct: 10  KKGYLWKKGHLLPTWRERWFVLKPNSLSYYKSEDLKEKKGEIALDSNCCVESLPDREGKK 69

Query: 160 C-FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
           C F + T                        Y +SA+  + + EWI
Sbjct: 70  CRFCVKTP--------------------DKTYELSASDHKTRQEWI 95

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
          N  K G+  KQG   K+WKRR+FIL+D  + Y++  TDK  
Sbjct: 7  NVIKSGYCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEP 47

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin homology (PH) domain

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           K GWL KQGG  K+W  RWF+L    LYYF+   + +P G I L   +V E      P  
Sbjct: 5   KCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNRVTE-----HPCN 59

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
            E      +F+       + + +   H  Y + A+T  + ++W+K +
Sbjct: 60  EE---EPGKFLFEVVPGGDRERMTANHETYLLMASTQNDMEDWVKSI 103

RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 29/115 (25%)

Query: 101 KEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKE-PRGIIPLENIQVREVHD 154
           K GWL+K+GG       K+WK RWF+L D  L Y+E   +     G I + +   +E+ D
Sbjct: 9   KSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQEGAKALGTIDIRSA--KEIVD 66

Query: 155 RH-KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
              K + F++ T                        Y   A + E+  +W   L+
Sbjct: 67  NTPKENGFDITTPS--------------------RTYHFVAESPEDASQWFSVLT 101

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)

Query: 100 DKEGWLWKQGGRYKS---WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
              G+L K+GG  K    W  R+ I++  C+YYF+ +   +P+G+  L     R   +  
Sbjct: 10  THSGYLTKKGGSQKQLLKWPLRYVIIHKGCVYYFKNSQSAKPKGVFSLNGYNRRAAEETT 69

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
               F      F+ I   K           H  +  SA + +E  EW++ L
Sbjct: 70  SKKKF-----VFKIIHLSK----------DHRTWYFSAKSEDEMKEWMESL 105

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREVHDRHKPH 159
           K GWL K+  + K+WK+RWF+L    L Y++   + + R +I L  +  V  + D+ + +
Sbjct: 8   KSGWLLKRSRKTKTWKKRWFVLRPCQLSYYKDEKEYKLRRVINLSELTAVAPLKDKKRKN 67

Query: 160 CFELFTS 166
            F ++T 
Sbjct: 68  VFAIYTP 74

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 20/107 (18%)

Query: 103 GWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP--HC 160
           GW+ K+G RY +WK R+F+L    LYY +   D + +G+I L   +V       KP  + 
Sbjct: 3   GWMKKRGERYGTWKTRYFVLKGTRLYYLKSENDSKEKGLIDLTGHRVTVDDSNSKPGRYG 62

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           F+L                  V      V+  +    E   EW+K L
Sbjct: 63  FKL------------------VPPAVEKVHYFAVDEKEVLREWMKAL 91

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
          K G+L K GG+ K+WKRRWF+L +  L+Y+
Sbjct: 1  KAGYLTKLGGKVKTWKRRWFVLKNGELFYY 30

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241274 cd01241, PH_PKB, Protein Kinase B-like pleckstrin homology (PH) domain

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 33/109 (30%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
           +  KEGWL K+G   K+W+ RWF+L          + D + +G       Q ++V    K
Sbjct: 2   SVVKEGWLTKRGEYIKTWRPRWFVL---------KSDDGKFKGYKEKP--QDKDVDPTPK 50

Query: 158 P-HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
           P + F         +   +T             Y +     +E  E   
Sbjct: 51  PLNNFS--------VAIKRT-------------YLIKTEKPKEVIENTF 78

PKB (also called Akt), a member of the AGC kinase family, is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase which alters the activity of the targeted protein. The name AGC is based on the three proteins that it is most similar to cAMP-dependent protein kinase 1 (PKA; also known as PKAC), cGMP-dependent protein kinase (PKG; also known as CGK1) and protein kinase C (PKC). Human Akt has three isoforms derived for distinct genes: Akt1/PKBalpha, Akt2/PKBbeta, and Akt3/PKBgamma. All Akts have an N-terminal PH domain with an activating Thr phosphorylation site, a kinase domain, and a short C-terminal regulatory tail with an activating Ser phosphorylation site. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. The phosphorylation of Akt at its Thr and Ser phosphorylation sites leads to increased Akt activity toward forkhead transcription factors, the mammalian target of rapamycin (mTOR), and the Bcl-xL/Bcl-2-associated death promoter (BAD), all of which possess a consensus motif R-X-R-XX-ST-B (X = amino acid, B = bulky hydrophobic residue) for Akt phosphorylation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 121

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 22/109 (20%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE-PRGIIPLENIQVREVHDRHK-P 158
           K G+L K+G R   + R WF+L    L ++  +TD   P G I L      E+ D+ K  
Sbjct: 31  KSGYLSKRGKRTPRYNRYWFVLKGDVLSWYRSSTDLYFPHGTIDLRYGISAEITDKDKET 90

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             F++ T+                       Y   A +     EW+K L
Sbjct: 91  THFKITTN--------------------SRTYTFKADSEPSAKEWVKAL 119

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241463 cd13309, PH_SKIP, SifA and kinesin-interacting protein Pleckstrin homology (PH) domain

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 26/117 (22%)

Query: 101 KEGWLWKQGGRYKS----WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ---VREVH 153
           KEG L  + G        WK  +F+L +  LY +   +D+ P   I L   Q    R ++
Sbjct: 2   KEGPLMYKTGTSYLGGETWKPGYFLLKNGVLYQYPDRSDRLPLLSISLGGEQCGGCRRIN 61

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
           +  +PH FEL  +                         ++A    E  EW++ L   
Sbjct: 62  NTDRPHSFELILTD-------------------RPSLELAAPDEYEASEWLQSLCQS 99

SKIP (also called PLEKHM2/Pleckstrin homology domain-containing family M member 2) is a soluble cytosolic protein that contains a RUN domain and a PH domain separated by a unstructured linker region. SKIP is a target of the Salmonella effector protein SifA and the SifA-SKIP complex regulates kinesin-1 on the bacterial vacuole. The PH domain of SKIP binds to the N-terminal region of SifA while the N-terminus of SKIP is proposed to bind the TPR domain of the kinesin light chain. The opposite side of the SKIP PH domain is proposed to bind phosphoinositides. TSifA, SKIP, SseJ, and RhoA family GTPases are also thought to promote host membrane tubulation. Recently, it was shown that the lysosomal GTPase Arl8 binds to the kinesin-1 linker SKIP and that both are required for the normal intracellular distribution of lysosomes. Interestingly, two kinesin light chain binding motifs (WD) in SKIP have now been identified to match a consensus sequence for a kinesin light chain binding site found in several proteins including calsyntenin-1/alcadein, caytaxin, and vaccinia virus A36. SKIP has also been shown to interact with Rab1A. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 10 EGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKSAC 47
          EG+L+K+G   K WK+RWF+L      L Y+E   D    
Sbjct: 6  EGYLYKRGALLKGWKQRWFVLDLTKHQLRYYESKEDTKCK 45

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 101 KEGWLWK--QGGRYKS---WKRRWFILNDKCLYYFEY--TTDKEPRGIIPLENIQ-VREV 152
           KEG L K  QG +      +K RWF+L    L Y+E       + +G I L  I+ V EV
Sbjct: 1   KEGLLVKRSQGKKRFGPVNYKERWFVLTKSSLSYYEGDGGKRGKEKGSIDLSKIKCVEEV 60

Query: 153 HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
            D         F   + F          +VV   +T+Y + A + E++DEWI
Sbjct: 61  KDD------ASFERKYPF----------QVVYDDYTLY-VFAPSEEDRDEWI 95

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 103 GWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH---KPH 159
           G+L+++  + KSWKR WF+L DK LY ++ + D      IPL    V    +     +  
Sbjct: 3   GYLYRRKRKKKSWKRLWFVLKDKVLYTYKASEDVVALESIPLLGYTVVPAKEGFEGDESL 62

Query: 160 CFELFTSGFEFIKACKTDSE 179
            F+L   G         D+E
Sbjct: 63  VFQLLHKGQLPYIFRADDAE 82

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 7  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
            K GWL KQGG  K+W+RRWF+L    LYY+
Sbjct: 3  VIKSGWLKKQGGIVKNWQRRWFVLRGDQLYYY 34

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241266 cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein pleckstrin homology (PH) domain

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH---- 156
           K+G+L         W RRW +L    L+ +    D + RG+I L   +V   +       
Sbjct: 16  KKGYLLFLEDATDGWVRRWVVLRRPYLHIYSSEKDGDERGVINLSTARVE--YSPDQEAL 73

Query: 157 --KPHCFELFTSGFEFIKACKTDSE 179
             +P+ F ++T    ++   +++ E
Sbjct: 74  LGRPNVFAVYTPTNSYLLQARSEKE 98

The kinesin-3 family motors KIFIA (Caenorhabditis elegans homolog unc-104) and KIFIB transport synaptic vesicle precursors that contain synaptic vesicle proteins, such as synaptophysin, synaptotagmin and the small GTPase RAB3A, but they do not transport organelles that contain plasma membrane proteins. They have a N-terminal motor domain, followed by a coiled-coil domain, and a C-terminal PH domain. KIF1A adopts a monomeric form in vitro, but acts as a processive dimer in vivo. KIF1B has alternatively spliced isoforms distinguished by the presence or absence of insertion sequences in the conserved amino-terminal region of the protein; this results in their different motor activities. KIF1A and KIF1B bind to RAB3 proteins through the adaptor protein mitogen-activated protein kinase (MAPK) -activating death domain (MADD; also calledDENN), which was first identified as a RAB3 guanine nucleotide exchange factor (GEF). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          K G+L K+G R K+WK+RWF+L    L Y  Y  DK
Sbjct: 8  KAGYLEKKGERRKTWKKRWFVLRPTKLAY--YKNDK 41

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 9  KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKS 45
          KEGWL K+GG+  KSWK+RWF+L D  L Y++   D S
Sbjct: 1  KEGWLKKRGGKGLKSWKKRWFVLFDDVLLYYKSKKDSS 38

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 2

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 102 EGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ-VREVH--DRHK 157
           +G+L     +    WK+ W +L ++ L +++  ++  P  IIP+++I  V E+    + K
Sbjct: 9   QGYLQVLKKKGVNQWKKYWLVLRNRSLSFYKDQSEYSPVKIIPIDDIIDVVELDPLSKSK 68

Query: 158 PHCFELFT 165
             C ++ T
Sbjct: 69  KWCLQIIT 76

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 102

>gnl|CDD|241274 cd01241, PH_PKB, Protein Kinase B-like pleckstrin homology (PH) domain

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFIL 30
          +  KEGWL K+G   K+W+ RWF+L
Sbjct: 2  SVVKEGWLTKRGEYIKTWRPRWFVL 26

PKB (also called Akt), a member of the AGC kinase family, is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase which alters the activity of the targeted protein. The name AGC is based on the three proteins that it is most similar to cAMP-dependent protein kinase 1 (PKA; also known as PKAC), cGMP-dependent protein kinase (PKG; also known as CGK1) and protein kinase C (PKC). Human Akt has three isoforms derived for distinct genes: Akt1/PKBalpha, Akt2/PKBbeta, and Akt3/PKBgamma. All Akts have an N-terminal PH domain with an activating Thr phosphorylation site, a kinase domain, and a short C-terminal regulatory tail with an activating Ser phosphorylation site. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. The phosphorylation of Akt at its Thr and Ser phosphorylation sites leads to increased Akt activity toward forkhead transcription factors, the mammalian target of rapamycin (mTOR), and the Bcl-xL/Bcl-2-associated death promoter (BAD), all of which possess a consensus motif R-X-R-XX-ST-B (X = amino acid, B = bulky hydrophobic residue) for Akt phosphorylation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 121

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 8  DKEGWLWKQGGRYK-SWKRRWFILNDKCLYYFE 39
           KEG+L K G +    +++RWF L+D+ L YF+
Sbjct: 3  LKEGYLEKTGPKQTDGFRKRWFTLDDRRLMYFK 35

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 11 GWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
          G+L+++  + KSWKR WF+L DK LY ++ + D  A
Sbjct: 3  GYLYRRKRKKKSWKRLWFVLKDKVLYTYKASEDVVA 38

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 98  NPDKEGWLWKQ----GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH 153
             D +GWLWK+    G   + WKR WF+L    LY++    D++  G I L + ++    
Sbjct: 12  RGDCDGWLWKKKEAKGFFGQKWKRYWFVLKGSSLYWYNNPQDEKAEGFINLPDFKIERAS 71

Query: 154 DRHKPHCFEL 163
           +  K + F+ 
Sbjct: 72  ECKKKYAFKA 81

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 9  KEGWLWKQ-GGRYKSWKRRWFILNDKCLYYF 38
          KEG+L+K+    +K+WKRRWF + +  L Y 
Sbjct: 1  KEGYLFKRSSNAFKTWKRRWFSIQNGQLVYQ 31

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 17/106 (16%)

Query: 110 GRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVH--DR---HKPHCF 161
               +W RRW +L    L +++Y  D   K+P G I L      +V    R    +P+ F
Sbjct: 15  SGLGAWHRRWCVLRGGYLSFWKYPEDEEKKKPIGSIDLRKCINEKVEPASRELCARPNTF 74

Query: 162 ELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           EL T       A  +D   +          +SA T EE+ EW+  L
Sbjct: 75  ELETL----RPAEDSDGTNEKKR-----VLLSADTKEERIEWLDAL 111

Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin homology domain-containing family K) is an actin binding protein involved in cytokinesis. It interacts with GTP-bound Rho proteins and results in the inhibition of their GTPase activity. Dysregulation of the Rho signal transduction pathway has been implicated in many forms of cancer. Anillin proteins have a N-terminal HRI domain/ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. The C-terminal PH domain helps target anillin to ectopic septin containing foci. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|241406 cd13252, PH1_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 1

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQV 149
           KEG+LWK+G     +K+R F+L+++   L YF     KEP+ +I ++ +  
Sbjct: 13  KEGFLWKRGKDNNQFKQRKFVLSEREGTLKYFVKEDAKEPKAVISIKELNA 63

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 9  KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKSA 46
          KEGWL K+G    KSWK+R+F+L D  L Y++ +   S+
Sbjct: 3  KEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSSS 41

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 20/36 (55%), Positives = 24/36 (66%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          KEG+L KQGG  K+WK RWF+L    L YF+  TD 
Sbjct: 5  KEGYLTKQGGIVKNWKTRWFVLRKNELKYFKTRTDT 40

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPL 144
           K GWL +Q    K WK+ WF+L +D  L Y+E  + ++  G I +
Sbjct: 5   KSGWLLRQSTILKRWKKNWFVLYSDGELSYYEDESRRDVEGRINM 49

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 9  KEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKSACL 48
          K GWL+K+GG       K+WK RWF+L D  L Y+E   + +  L
Sbjct: 9  KSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQEGAKAL 53

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241433 cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) domain

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 101 KEGWL-WKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K GW+  K+ G     W +R+ +L ++ L +++  +       IPL++I      D  KP
Sbjct: 3   KSGWVSVKEDGLLSFRWSKRYLVLREQSLDFYKNESSSSASLSIPLKDISNVSRTDL-KP 61

Query: 159 HCFELFTSGFE--FIKACKTDSE 179
           +CFE+           + K+D E
Sbjct: 62  YCFEIVRKSSTKSIYISVKSDDE 84

Budding yeast contain two main p21-activated kinases (PAKs), Cla4 and Ste20. The yeast Ste20 protein kinase is involved in pheromone response, though the function of Ste20 mammalian homologs is unknown. Cla4 is involved in budding and cytokinesis and interacts with Cdc42, a GTPase required for polarized cell growth as is Pak. Cla4 and Ste20 kinases share a function in localizing cell growth with respect to the septin ring. They both contain a PH domain, a Cdc42/Rac interactive binding (CRIB) domain, and a C-terminal Protein Kinase catalytic (PKc) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 91

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 23/112 (20%)

Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYF-EYTTDKEPRGIIPLENIQVREVHDRHKP 158
           +++   +++   +K    RWF L    L+YF       EP G+I LEN +V+        
Sbjct: 3   ERQMGFFRKSEVFK---ERWFKLRGNLLFYFKSNEPGSEPAGVIVLENCRVQREEPDPGG 59

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
             F L      F             + K   YR S  + EE+DEWI+ +   
Sbjct: 60  FAFSL-----VFK------------DEKK--YRFSCRSEEERDEWIEAIKQA 92

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 103 GWLWK--QGGRYKSWKRRWFILND-KC-LYYFEYTTDKEPRGIIPLEN 146
           G+L K    G  K+WK RWF+ ++ KC LYY+    D  P G I L  
Sbjct: 4   GYLNKLETKGLLKTWKSRWFVFDERKCQLYYYRSPQDITPLGSIDLSG 51

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin homology (PH) domain

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFE 39
          K GWL KQGG  K+W  RWF+L    LYYF+
Sbjct: 5  KCGWLRKQGGFVKTWHTRWFVLKGDQLYYFK 35

RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241253 cd01218, PH_Phafin2-like, Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 28/109 (25%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE----PRGIIPLENIQVREVHDRH 156
            EG L K   R K  K R F L +  L Y     +K+     R IIPLE++++ ++ D  
Sbjct: 32  GEGVLTKVC-R-KKPKPRQFFLFNDILVYGSIVINKKKYNKQR-IIPLEDVKIEDLEDTG 88

Query: 157 KP-HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
           +  + +++ +    F                  VY   AATA EK EW+
Sbjct: 89  ELKNGWQIISPKKSF-----------------VVY---AATATEKSEWM 117

Phafin2 is differentially expressed in the liver cancer cell and regulates the structure and function of the endosomes through Rab5-dependent processes. Phafin2 modulates the cell's response to extracellular stimulation by modulating the receptor density on the cell surface. Phafin2 contains a PH domain and a FYVE domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 52 SSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDD 88
          SS  +K+WKRRWF + +  L Y +        +  +D
Sbjct: 9  SSNAFKTWKRRWFSIQNGQLVYQKRFKKDTPTVVVED 45

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 8  DKEGWLWKQGGRYKS---WKRRWFILNDKCLYYFEYTTDKSA 46
             G+L K+GG  K    W  R+ I++  C+YYF+ +     
Sbjct: 10 THSGYLTKKGGSQKQLLKWPLRYVIIHKGCVYYFKNSQSAKP 51

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 7  PDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFE 39
            KEGWL+K+ G   KSWK+R+F+L +  L Y++
Sbjct: 1  VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYK 34

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 11 GWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
          GW+ K+G RY +WK R+F+L    LYY +   D  
Sbjct: 3  GWMKKRGERYGTWKTRYFVLKGTRLYYLKSENDSK 37

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241277 cd01244, PH_GAP1-like, RAS p21 protein activator (GTPase activating protein) family pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 101 KEGWLWK--QGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE 151
           KEG+L K  QG +     K++K+R+F L ++ L Y + +   +P   IPL++I   E
Sbjct: 1   KEGYLIKRAQGRKGKLGRKNFKKRYFRLTNEALSYSK-SKGSQPLCSIPLQDILAVE 56

RASAL1, GAP1(m), GAP1(IP4BP), and CAPRI are all members of the GAP1 family of GTPase-activating proteins. They contain N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. They act as a suppressor of RAS enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKSACLIENSSGR-----YKSWKR 61
          K+G+LWK+G    +W+ RWF+L    L Y+  E   +K   +  +S+        +  K+
Sbjct: 10 KKGYLWKKGHLLPTWRERWFVLKPNSLSYYKSEDLKEKKGEIALDSNCCVESLPDREGKK 69

Query: 62 RWFIL 66
            F +
Sbjct: 70 CRFCV 74

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 9  KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDK 44
          K GWL +Q    K WK+ WF+L +D  L Y+E  + +
Sbjct: 5  KSGWLLRQSTILKRWKKNWFVLYSDGELSYYEDESRR 41

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 102 EGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQV---REVHDR 155
           +GWL+   ++G     W +RWF+L    LY F      +   +I L    V    EV  R
Sbjct: 2   QGWLYQRRRKGKGGGKWAKRWFVLKGSNLYGFRSQESTKADCVIFLPGFTVSPAPEVKSR 61

Query: 156 HKPHCFELFTSGFEFIKACKT 176
              + F+++ +G  F  A ++
Sbjct: 62  --KYAFKVYHTGTVFYFAAES 80

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241432 cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 40/126 (31%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTDKEPRGIIPLENI-------QVREV 152
           KEG+L ++GG  + W+RR+F L   K + Y E T  ++PR  I L  +         RE 
Sbjct: 21  KEGYLLQEGGDCEYWRRRFFKLQGTKLVAYHEVT--RKPRATINLLKVVDVVDDDDARER 78

Query: 153 HDRHK---------PHCFEL-FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
               K           CF L F +G E I                  Y   A + EEK +
Sbjct: 79  TSSFKRNFTDLVLFEECFRLVFANG-EVI----------------DFY---ADSKEEKAD 118

Query: 203 WIKCLS 208
           W   L 
Sbjct: 119 WYSKLK 124

Bud4 is an anillin-like yeast protein involved in the formation and the disassembly of the double ring structure formed by the septins during cytokinesis. Bud4 acts with Bud3 and and in parallel with septin phosphorylation by the p21-activated kinase Cla4 and the septin-dependent kinase Gin4. Bud4 is regulated by the cyclin-dependent protein kinase Cdk1, the master regulator of cell cycle progression. Bud4 contains an anillin-like domain followed by a PH domain. In addition there are two consensus Cdk phosphorylation sites: one at the N-terminus and one right before the C-terminal PH domain. Anillins also have C-terminal PH domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241447 cd13293, PH_CpORP2-like, Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) domain

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 102 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
           EG+L K    + SWK R+FIL    L Y +       +G I L+   +R V D
Sbjct: 2   EGYLKKWTNIFNSWKPRYFILYPGILCYSK-QKGGPKKGTIHLKICDIRLVPD 53

There are 2 types of ORPs found in Cryptosporidium: CpORP1 and CpORP2. Cryptosporium differs from other apicomplexans like Plasmodium, Toxoplasma, and Eimeria which possess only a single long-type ORP consisting of an N-terminal PH domain followed by a C-terminal ligand binding (LB) domain. CpORP2 is like this, but CpORP1 differs and has a truncated N-terminus resulting in only having a LB domain present. The exact functions of these proteins are largely unknown though CpORP1 is thought to be involved in lipid transport across the parasitophorous vacuole membrane. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 88

>gnl|CDD|241290 cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 99  PDKEGWLW-KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL 144
           P+ EG+L+ K+ G+ KSWK+R+F+L    LYY      KE R +  L
Sbjct: 6   PEIEGFLYLKEDGK-KSWKKRYFVLRASGLYYSPKGKSKESRDLQCL 51

APBB1IP consists of a Ras-associated (RA) domain, a PH domain, a family-specific BPS region, and a C-terminal SH2 domain. Grb7, Grb10 and Grb14 are paralogs that are also present in this hierarchy. These adapter proteins bind a variety of receptor tyrosine kinases, including the insulin and insulin-like growth factor-1 (IGF1) receptors. Grb10 and Grb14 are important tissue-specific negative regulators of insulin and IGF1 signaling based and may contribute to type 2 (non-insulin-dependent) diabetes in humans. RA-PH function as a single structural unit and is dimerized via a helical extension of the PH domain. The PH domain here are proposed to bind phosphoinositides non-cannonically ahd are unlikely to bind an activated GTPase. The tandem RA-PH domains are present in a second adapter-protein family, MRL proteins, Caenorhabditis elegans protein MIG-1012, the mammalian proteins RIAM and lamellipodin and the Drosophila melanogaster protein Pico12, all of which are Ena/VASP-binding proteins involved in actin-cytoskeleton rearrangement. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 124

>gnl|CDD|241531 cd13380, PH_Skap1, Src kinase-associated phosphoprotein 1 Pleckstrin homology (PH) domain

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 101 KEGWLWKQGGRYK----SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV---- 152
           K+G+L K+   +      W++RW +L  +  YY+     K+P+G   +++   +      
Sbjct: 3   KQGYLEKRSKDHGFFGSEWQKRWCVLTTRAFYYYANEKSKQPKGGFLIKDSLAQMAPHLR 62

Query: 153 HDRHKPHCFELFTSG---FEFIKACKTDS 178
            D  +  CFEL T     +EF  A  +++
Sbjct: 63  KDSRRDSCFELTTPNQRTYEFTAASPSEA 91

Adaptor protein Skap1 (also called Skap55/Src kinase-associated phosphoprotein of 55 kDa) and its partner, ADAP (adhesion and degranulation promoting adapter protein) help reorganize the cytoskeleton and/or promote integrin-mediated adhesion upon immunoreceptor activation. Skap1 is also involved in T Cell Receptor (TCR)-induced RapL-Rap1 complex formation and LFA-1 activation. Skap1 has an N-terminal coiled-coil conformation which is proposed to be involved in homodimer formation, a central PH domain and a C-terminal SH3 domain that associates with ADAP. The Skap1 PH domain plays a role in controlling integrin function via recruitment of ADAP-SKAP complexes to integrins as well as in controlling the ability of ADAP to interact with the CBM signalosome and regulate NF-kappaB. SKAP1 is necessary for RapL binding to membranes in a PH domain-dependent manner and the PI3K pathway. Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Skap55/Skap1, Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241407 cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 8  DKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFE 39
           K GWL K   +    +++RW + +   L YF 
Sbjct: 1  TKSGWLDKLSPQGNYVFQKRWVVFDGDSLRYFN 33

ARAP proteins (also called centaurin delta) are phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating proteins that modulate actin cytoskeleton remodeling by regulating ARF and RHO family members. They bind phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) and phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding. There are 3 mammalian ARAP proteins: ARAP1, ARAP2, and ARAP3. All ARAP proteins contain a N-terminal SAM (sterile alpha motif) domain, 5 PH domains, an ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a Ras-associating domain. This hierarchy contains the first PH domain in ARAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 93

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 9  KEGWLWK--QGGRYKS---WKRRWFILNDKCLYYFEYTTDKSACL 48
          KEG L K  QG +      +K RWF+L    L Y+E    K    
Sbjct: 1  KEGLLVKRSQGKKRFGPVNYKERWFVLTKSSLSYYEGDGGKRGKE 45

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
          KEG+L K+G    +WK RWF+L +  L Y++  TD S 
Sbjct: 5  KEGFLVKKGHVVNNWKARWFVLLEDKLEYYKKKTDSSP 42

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241414 cd13260, PH_RASA1, RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 5  FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFE 39
              K+G+L K+ G+ K WK  +F+L   ++ LY+FE
Sbjct: 1  KGIVKKGYLLKKSGKNKKWKNLYFVLEGAEQHLYFFE 37

RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 48 LIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFK 83
          L +      KSWK+RWF+L D  L Y++   D   K
Sbjct: 5  LKKRGGKGLKSWKKRWFVLFDDVLLYYKSKKDSSKK 40

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 6  NPDKEGWLWKQ----GGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
            D +GWLWK+    G   + WKR WF+L    LY++    D+ A
Sbjct: 12 RGDCDGWLWKKKEAKGFFGQKWKRYWFVLKGSSLYWYNNPQDEKA 56

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241420 cd13266, PH_Skap_family, Src kinase-associated phosphoprotein family Pleckstrin homology (PH) domain

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 23/94 (24%)

Query: 115 WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEF 170
           W++RW +L++   YY+    DK+ +G   ++  + R       D  K  CFE+       
Sbjct: 21  WQKRWCVLSNTAFYYYGSEKDKQQKGEFAIDGYRARMNPTLRKDSKKDCCFEISAPD--- 77

Query: 171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
                             VY+ +AA+ +E  EW+
Sbjct: 78  ----------------KRVYQFTAASPKEAREWV 95

Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Src kinase-associated phosphoprotein of 55 kDa (Skap55)/Src kinase-associated phosphoprotein 1 (Skap1), Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241288 cd01257, PH_IRS, Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 35/118 (29%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDK------CLYYFE----YTTDKEPRGIIPLEN-IQV 149
           K G+L K     K+ ++R+F+L  +       L Y+E    +  + EP+ +IPL +   +
Sbjct: 5   KSGYLKKL----KTMRKRYFVLRAESHGGPARLEYYENEKKFRRNAEPKRVIPLSSCFNI 60

Query: 150 REVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
            +  D    H   L+T                    K   + + A + EE+DEW + L
Sbjct: 61  NKRADAKHKHLIALYT--------------------KDECFGLVAESEEEQDEWYQAL 98

Insulin receptor substrate (IRS) molecules are mediators in insulin signaling and play a role in maintaining basic cellular functions such as growth and metabolism. They act as docking proteins between the insulin receptor and a complex network of intracellular signaling molecules containing Src homology 2 (SH2) domains. Four members (IRS-1, IRS-2, IRS-3, IRS-4) of this family have been identified that differ as to tissue distribution, subcellular localization, developmental expression, binding to the insulin receptor, and interaction with SH2 domain-containing proteins. IRS molecules have an N-terminal PH domain, followed by an IRS-like PTB domain which has a PH-like fold. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.cytoskeletal associated molecules, and in lipid associated enzymes. Length = 106

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 53 SGRYKSWKRRWFILNDKCLYYF 74
           G+ K+WKRRWF+L +  L+Y+
Sbjct: 9  GGKVKTWKRRWFVLKNGELFYY 30

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 43
          K G+L K+G R   + R WF+L    L ++  +TD
Sbjct: 31 KSGYLSKRGKRTPRYNRYWFVLKGDVLSWYRSSTD 65

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241447 cd13293, PH_CpORP2-like, Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) domain

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYY 37
          EG+L K    + SWK R+FIL    L Y
Sbjct: 2  EGYLKKWTNIFNSWKPRYFILYPGILCY 29

There are 2 types of ORPs found in Cryptosporidium: CpORP1 and CpORP2. Cryptosporium differs from other apicomplexans like Plasmodium, Toxoplasma, and Eimeria which possess only a single long-type ORP consisting of an N-terminal PH domain followed by a C-terminal ligand binding (LB) domain. CpORP2 is like this, but CpORP1 differs and has a truncated N-terminus resulting in only having a LB domain present. The exact functions of these proteins are largely unknown though CpORP1 is thought to be involved in lipid transport across the parasitophorous vacuole membrane. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 88

>gnl|CDD|241540 cd13389, PH1_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 Pleckstrin Homology (PH) domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 26/112 (23%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPR----GIIPLENIQVREVHDRH 156
           KEG L K     K  + R+  L +  L Y         +      +PL  ++V    D  
Sbjct: 16  KEGELMKVSR--KEMQPRYLFLFNDVLLYTTPVQSGVGKYKLKNELPLSGMKVSLPEDEE 73

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             + F++ ++   F                     +SA++AEE+DEW+K LS
Sbjct: 74  YSNEFQIESTKRSFT--------------------LSASSAEERDEWVKALS 105

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 36/122 (29%)

Query: 101 KEGWLWK---QGGRY-----KSWKRRWFILN---DKCLYYFEYTTD---KEPRGIIPLEN 146
           KEG+L+K       +     KS+KRR+F L    D   Y  E+  D   KE +G I L++
Sbjct: 8   KEGYLYKGPENSSMFISLAMKSFKRRFFHLKQLVDGS-YILEFYKDEKSKEAKGTIYLDS 66

Query: 147 -IQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
              V +   R K  CFEL                 ++ +GK   Y ++A +  E D+WI 
Sbjct: 67  CTGVVQNSKRRK-FCFEL-----------------RMQDGK--SYVLAAESESEMDDWIS 106

Query: 206 CL 207
            L
Sbjct: 107 KL 108

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241446 cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol binding protein homologs 1 and 2 Pleckstrin homology (PH) domain

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 99  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRH 156
           P  +G+L K     K +K RWF+L D  L Y+ +  D     RG I ++N ++    D  
Sbjct: 2   PTMKGYLKKWTNYAKGYKTRWFVLEDGVLSYYRHQDDEGSACRGSINMKNARLV--SDPS 59

Query: 157 KPHCFEL 163
           +   FE+
Sbjct: 60  EKLRFEV 66

Yeast Osh1p is proposed to function in postsynthetic sterol regulation, piecemeal microautophagy of the nucleus, and cell polarity establishment. Yeast Osh2p is proposed to function in sterol metabolism and cell polarity establishment. Both Osh1p and Osh2p contain 3 N-terminal ankyrin repeats, a PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBP andOsh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241432 cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) domain

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILN 31
          KEG+L ++GG  + W+RR+F L 
Sbjct: 21 KEGYLLQEGGDCEYWRRRFFKLQ 43

Bud4 is an anillin-like yeast protein involved in the formation and the disassembly of the double ring structure formed by the septins during cytokinesis. Bud4 acts with Bud3 and and in parallel with septin phosphorylation by the p21-activated kinase Cla4 and the septin-dependent kinase Gin4. Bud4 is regulated by the cyclin-dependent protein kinase Cdk1, the master regulator of cell cycle progression. Bud4 contains an anillin-like domain followed by a PH domain. In addition there are two consensus Cdk phosphorylation sites: one at the N-terminus and one right before the C-terminal PH domain. Anillins also have C-terminal PH domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241431 cd13277, PH_Bem3, Bud emergence protein 3 (Bem3) Pleckstrin homology (PH) domain

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 21/116 (18%)

Query: 101 KEGWLWKQG----GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--- 153
           KEG+L K+     G    WK R+ +L+   L  +E +   +    I L N Q+       
Sbjct: 5   KEGYLLKRRKKTLGSTGGWKLRYGVLDGNILELYE-SRGGQLLESIKLRNAQIERQPNLP 63

Query: 154 -DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
            D++          GF   +  K+           T Y + A T +E+DEW+  LS
Sbjct: 64  DDKYG------TRHGFLINEHKKSGLSST------TKYYLCAETDKERDEWVSALS 107

Bud emergence in Saccharomyces cerevisiae involves cell cycle-regulated reorganizations of cortical cytoskeletal elements and requires the action of the Rho-type GTPase Cdc42. Bem3 contains a RhoGAP domain and a PH domain. Though Bem3 and Bem2 both contain a RhoGAP, but only Bem3 is able to stimulate the hydrolysis of GTP on Cdc42. Bem3 is thought to be the GAP for Cdc42. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241272 cd01239, PH_PKD, Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 101 KEGWLW----KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI------QVR 150
           KEGW+     K   R    KR ++ L+ KC+  F+  T       IPL  I         
Sbjct: 10  KEGWMVHYTNKDPQR----KRHYWRLDTKCITLFQNETTSRYYKEIPLSEILAVEPADNP 65

Query: 151 EVHDRHKPHCFELFTSGFEF 170
            +     PHCFE+ T+   +
Sbjct: 66  SLPPGTPPHCFEIKTANLVY 85

Protein Kinase C family is composed of three members, PKD1 (PKCmu), PKD2 and PKD3 (PKCnu). Like the C-type protein kinases (PKCs), PKDs are activated by diacylglycerol (DAG). They are involved in vesicular transport, cell proliferation, survival, migration and immune responses. PKD consists of tandem C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 127

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 57 KSWKRRWFILNDKCLYYFEYTTDK 80
          K+WKRR+FIL+D  + Y++  TDK
Sbjct: 22 KNWKRRYFILDDNTISYYKSETDK 45

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFE 39
          K GWL KQ    K+W++RWF+L    L+Y++
Sbjct: 5  KAGWLKKQRSIMKNWQQRWFVLRGDQLFYYK 35

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 52 SSGRYKSWKRRWFILNDKCLYYFEYTTDK 80
             + KSWKR WF+L DK LY ++ + D 
Sbjct: 8  RKRKKKSWKRLWFVLKDKVLYTYKASEDV 36

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241429 cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
          K+GWL KQ      WK+ WF+L D  L Y+
Sbjct: 1  KKGWLMKQDED-GEWKKHWFVLRDASLRYY 29

M-RIP is proposed to play a role in myosin phosphatase regulation by RhoA. M-RIP contains 2 PH domains followed by a Rho binding domain (Rho-BD), and a C-terminal myosin binding subunit (MBS) binding domain (MBS-BD). The amino terminus of M-RIP with its adjacent PH domains and polyproline motifs mediates binding to both actin and Galpha. M-RIP brings RhoA and MBS into close proximity where M-RIP can target RhoA to the myosin phosphatase complex to regulate the myosin phosphorylation state. M-RIP does this via its C-terminal coiled-coil domain which interacts with the MBS leucine zipper domain of myosin phosphatase, while its Rho-BD, directly binds RhoA in a nucleotide-independent manner. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241429 cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
           K+GWL KQ      WK+ WF+L D  L Y+
Sbjct: 1   KKGWLMKQDED-GEWKKHWFVLRDASLRYY 29

M-RIP is proposed to play a role in myosin phosphatase regulation by RhoA. M-RIP contains 2 PH domains followed by a Rho binding domain (Rho-BD), and a C-terminal myosin binding subunit (MBS) binding domain (MBS-BD). The amino terminus of M-RIP with its adjacent PH domains and polyproline motifs mediates binding to both actin and Galpha. M-RIP brings RhoA and MBS into close proximity where M-RIP can target RhoA to the myosin phosphatase complex to regulate the myosin phosphorylation state. M-RIP does this via its C-terminal coiled-coil domain which interacts with the MBS leucine zipper domain of myosin phosphatase, while its Rho-BD, directly binds RhoA in a nucleotide-independent manner. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYF 38
           +GWL K     K ++RRWF+L++  L Y+
Sbjct: 1  FKGWLLKWTNYLKGYQRRWFVLSNGLLSYY 30

Human OSBP is proposed to function is sterol-dependent regulation of ERK dephosphorylation and sphingomyelin synthesis as well as modulation of insulin signaling and hepatic lipogenesis. It contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBPs and Osh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. ORP4 is proposed to function in Vimentin-dependent sterol transport and/or signaling. Human ORP4 has 2 forms, a long (ORP4L) and a short (ORP4S). ORP4L contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP4S is truncated and contains only an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 99

>gnl|CDD|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYF 130
            +GWL K     K ++RRWF+L++  L Y+
Sbjct: 1   FKGWLLKWTNYLKGYQRRWFVLSNGLLSYY 30

Human OSBP is proposed to function is sterol-dependent regulation of ERK dephosphorylation and sphingomyelin synthesis as well as modulation of insulin signaling and hepatic lipogenesis. It contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBPs and Osh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. ORP4 is proposed to function in Vimentin-dependent sterol transport and/or signaling. Human ORP4 has 2 forms, a long (ORP4L) and a short (ORP4S). ORP4L contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP4S is truncated and contains only an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG0930|consensus	395		100.0
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.91
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.91
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.9
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.89
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.89
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.88
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.88
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.87
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.86
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.85
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.85
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.84
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.83
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.83
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.82
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.78
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.77
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.76
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.75
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.74
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.69
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.66
PF15409	89	PH_8: Pleckstrin homology domain	99.66
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.62
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.62
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.6
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.59
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.58
KOG0930|consensus	395		99.58
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.58
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.56
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.56
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.55
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.54
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.52
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.5
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.49
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.48
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.48
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.48
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.47
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.46
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.43
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.42
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.4
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	99.4
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.36
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.33
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.29
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.28
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.22
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.21
KOG0248|consensus	936		99.21
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	99.19
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	99.15
PF15409	89	PH_8: Pleckstrin homology domain	99.11
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	99.1
KOG1117|consensus	1186		99.06
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	99.05
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	99.03
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.03
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.03
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.01
KOG0690|consensus	516		98.98
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.97
KOG1090|consensus	1732		98.95
KOG3640|consensus	1116		98.92
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	98.89
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.81
KOG2059|consensus	800		98.68
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	98.62
KOG3751|consensus	622		98.61
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	98.59
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	98.57
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.55
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.51
KOG0521|consensus	785		98.49
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	98.49
KOG0932|consensus	774		98.47
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	98.44
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.37
PTZ00267	478	NIMA-related protein kinase; Provisional	98.36
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.31
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	98.29
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	98.24
KOG1090|consensus	1732		98.2
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.19
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	98.18
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	98.11
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	98.08
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	98.03
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	97.97
KOG3531|consensus	1036		97.96
KOG1451|consensus	812		97.93
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.93
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	97.88
KOG0690|consensus	516		97.84
PLN02866	1068	phospholipase D	97.84
KOG1117|consensus	1186		97.84
KOG0248|consensus	936		97.79
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.79
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	97.79
KOG3751|consensus	622		97.76
KOG1739|consensus	611		97.73
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.72
KOG3723|consensus	851		97.65
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.6
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	97.59
KOG4424|consensus	623		97.55
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.52
KOG3543|consensus	1218		97.48
PF15406	112	PH_6: Pleckstrin homology domain	97.42
PTZ00283	496	serine/threonine protein kinase; Provisional	97.41
PF15408	104	PH_7: Pleckstrin homology domain	97.37
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	97.31
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	97.28
PF15404	185	PH_4: Pleckstrin homology domain	97.26
KOG0705|consensus	749		97.26
KOG4424|consensus	623		97.23
KOG2059|consensus	800		96.94
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	96.84
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	96.74
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	96.73
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	96.69
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	96.42
PLN02866	1068	phospholipase D	96.4
KOG1739|consensus	611		96.37
KOG3640|consensus	1116		96.05
KOG3551|consensus	506		95.96
KOG4236|consensus	888		95.74
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	95.47
KOG1737|consensus	799		95.17
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	95.03
KOG1737|consensus	799		95.02
PF15411	116	PH_10: Pleckstrin homology domain	94.81
KOG3549|consensus	505		94.52
KOG1738|consensus	638		94.18
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	94.09
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	94.08
PF15404	185	PH_4: Pleckstrin homology domain	93.84
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	93.62
PF15408	104	PH_7: Pleckstrin homology domain	93.54
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	93.18
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	93.16
KOG4807|consensus	593		92.6
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	92.54
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	92.53
KOG3523|consensus	695		90.03
PTZ00267	478	NIMA-related protein kinase; Provisional	89.2
KOG3727|consensus	664		89.16
KOG1738|consensus	638		88.94
KOG2070|consensus	661		88.45
KOG0521|consensus	785		88.09
KOG3723|consensus	851		87.29
KOG3531|consensus	1036		85.69
KOG3543|consensus	1218		85.51
KOG4407|consensus	1973		85.2
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	82.29
KOG1170|consensus	1099		80.66

>KOG0930|consensus

Probab=100.00  E-value=1e-34  Score=221.37  Aligned_cols=162  Identities=61%  Similarity=1.120  Sum_probs=154.8

Q ss_pred             cccCCcceecccceeEEEechh-----------HHHHHHhhhcCCccccCCCCCCccccccCCcceeeEEeecC-ccCCe
Q psy17820         48 LIENSSGRYKSWKRRWFILNDK-----------CLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGG-RYKSW  115 (210)
Q Consensus        48 ~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~-~~~~w  115 (210)
                      .+++++|+|.++.+.||.+|++           +.+.|++|+..++.+|.+++.++.+.+.+|+.+|||.|.++ +.++|
T Consensus       198 sLHNpNVrDkP~lErfi~MNrgineggdlpee~LrnlyeSi~~epFkIPeddgndlthtffnpdREGWLlKlgg~rvktW  277 (395)
T KOG0930|consen  198 SLHNPNVKDKPTLERFIAMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGNRVKTW  277 (395)
T ss_pred             cccCCCCCCCccHHHHHHHhhccccCCCCcHHHHHHHHHHhcCCCCCCCcccCCcchhhccCccccceeeeecCCcccch
Confidence            3789999999999999999887           89999999999999999999999999999999999999986 77899


Q ss_pred             eEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCC--ceeeeeeecCCCCceeeecceEEEEE
Q psy17820        116 KRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMS  193 (210)
Q Consensus       116 k~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~--~~~~~~~~~~~~~~~~~~~~r~~~l~  193 (210)
                      |||||+|.+++||||.-..+++|+|.|+|.+.+|..++++.+|+||+|+.+.  ++.+++|+.+.+|.+|.+.+..|.++
T Consensus       278 KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIs  357 (395)
T KOG0930|consen  278 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRIS  357 (395)
T ss_pred             hheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEee
Confidence            9999999999999999999999999999999999999999999999999886  49999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhc
Q psy17820        194 AATAEEKDEWIKCLSL  209 (210)
Q Consensus       194 a~s~~e~~~Wi~al~~  209 (210)
                      |.+.+|+++||.+|++
T Consensus       358 A~~~Ee~~~Wi~sI~a  373 (395)
T KOG0930|consen  358 APTPEEKDEWIKSIKA  373 (395)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999999975

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.91  E-value=1.3e-23  Score=148.65  Aligned_cols=110  Identities=71%  Similarity=1.304  Sum_probs=98.8

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCc-eeeeeeecCC
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF-EFIKACKTDS  178 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~-~~~~~~~~~~  178 (210)
                      +++|||.|+++..+.|++|||+|.++.|+||+++.+..|.+.|+|.++.|...++..++++|+|..++. +.+..|....
T Consensus         1 ~k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~   80 (125)
T cd01252           1 DREGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTES   80 (125)
T ss_pred             CcEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEcccCCCCeeEEEECCccccccccccccc
Confidence            478999999988899999999999999999999988999999999998888776667889999998875 5677788777


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .|.++.+..+.|+|+|+|++|+.+||.||++
T Consensus        81 ~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~  111 (125)
T cd01252          81 DGRVVEGNHSVYRISAANDEEMDEWIKSIKA  111 (125)
T ss_pred             cccccccCceEEEEECCCHHHHHHHHHHHHH
Confidence            7888888889999999999999999999985

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.91  E-value=2e-23  Score=141.81  Aligned_cols=91  Identities=24%  Similarity=0.448  Sum_probs=81.3

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC----CCcceEEEEeCCceeeeee
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR----HKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~----~~~~~f~i~~~~~~~~~~~  174 (210)
                      ++++|||.|+++..+.|++|||+|+++.|+||+++.+..|.+.|+|.++.+...++.    +++++|.|.+++       
T Consensus         2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~-------   74 (100)
T cd01233           2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKH-------   74 (100)
T ss_pred             cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCC-------
Confidence            358999999999889999999999999999999998899999999998887766543    367899998764       


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   |+|+|+|+|++|+++||.||++
T Consensus        75 -------------rt~~~~A~s~~e~~~Wi~ai~~   96 (100)
T cd01233          75 -------------RGYLFQALSDKEMIDWLYALNP   96 (100)
T ss_pred             -------------CEEEEEcCCHHHHHHHHHHhhh
Confidence                         7999999999999999999986

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.90  E-value=4.2e-23  Score=139.52  Aligned_cols=92  Identities=26%  Similarity=0.675  Sum_probs=81.1

Q ss_pred             cceeeEEeecCc----cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820        100 DKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus       100 ~~~G~L~k~~~~----~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      +++|||.|++..    .+.|++|||+|.++.|+||+++++..|.+.|+|.++++....+..++++|.|.+++.       
T Consensus         1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~-------   73 (96)
T cd01260           1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVKKKYAFKVCHPVY-------   73 (96)
T ss_pred             CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhcCCceEEEECCCCC-------
Confidence            479999999754    349999999999999999999999999999999999887765666889999987642       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                  ++|+|+|+|++|+++||.||+++
T Consensus        74 ------------~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          74 ------------KSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             ------------cEEEEEeCCHHHHHHHHHHHHhC
Confidence                        79999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.89  E-value=1.4e-22  Score=138.26  Aligned_cols=90  Identities=29%  Similarity=0.517  Sum_probs=74.3

Q ss_pred             ceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCe----EEEEe-cC--C-CCcceEEEEeCCceee
Q psy17820        101 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI----QVREV-HD--R-HKPHCFELFTSGFEFI  171 (210)
Q Consensus       101 ~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~----~v~~~-~~--~-~~~~~f~i~~~~~~~~  171 (210)
                      ++|||.|+|+. .++|++|||+|+++.|+||+++.+..|.|.|+|..+    +|... ++  . ...++|.|.++     
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-----   75 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-----   75 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-----
Confidence            58999999986 689999999999999999999988999999999753    34321 11  1 22348888776     


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                     +|+|+|+|+|++|+++||.||+.+
T Consensus        76 ---------------~Rty~l~a~s~~e~~~Wi~ai~~v   99 (103)
T cd01251          76 ---------------ERKFLFACETEQDRREWIAAFQNV   99 (103)
T ss_pred             ---------------CeEEEEECCCHHHHHHHHHHHHHH
Confidence                           489999999999999999999864

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.89  E-value=3.4e-22  Score=133.11  Aligned_cols=89  Identities=19%  Similarity=0.404  Sum_probs=76.4

Q ss_pred             ceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCC
Q psy17820        101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDS  178 (210)
Q Consensus       101 ~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~  178 (210)
                      ++|||.|.++..++|++|||||+++.|.||+++.+  ..|+|.|+|..+.+...  ..++..|+|....           
T Consensus         1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~--~~~~~~F~i~~~~-----------   67 (91)
T cd01247           1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH--EFDENRFDISVNE-----------   67 (91)
T ss_pred             CceEEEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC--CCCCCEEEEEeCC-----------
Confidence            37999999999999999999999999999999776  34799999999876643  3346789987553           


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                              .++|+|.|+|++|+++||.||+++
T Consensus        68 --------~r~~~L~A~s~~e~~~Wi~al~~~   91 (91)
T cd01247          68 --------NVVWYLRAENSQSRLLWMDSVVRE   91 (91)
T ss_pred             --------CeEEEEEeCCHHHHHHHHHHHhhC
Confidence                    279999999999999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.88  E-value=4.2e-22  Score=133.64  Aligned_cols=90  Identities=29%  Similarity=0.588  Sum_probs=76.1

Q ss_pred             ceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCCCCce-eEEEeCCeEEEEecCC-----CCcceEEEEeCCceee
Q psy17820        101 KEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDKEPR-GIIPLENIQVREVHDR-----HKPHCFELFTSGFEFI  171 (210)
Q Consensus       101 ~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~~~~~-~~i~L~~~~v~~~~~~-----~~~~~f~i~~~~~~~~  171 (210)
                      .+|||.++++   ..++|++|||+|+++.|+||++.....|. +.|+|..+..+...+.     ..+++|+|.+++    
T Consensus         2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~----   77 (101)
T cd01264           2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD----   77 (101)
T ss_pred             cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC----
Confidence            5899999998   78999999999999999999988655555 9999999865443332     236899998885    


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                      |+|+|+|+|++++++||.+|+.+
T Consensus        78 ----------------rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          78 ----------------KTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             ----------------ceEEEEeCCHHHHHHHHHHHHhh
Confidence                            79999999999999999999864

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.88  E-value=1e-21  Score=132.14  Aligned_cols=88  Identities=25%  Similarity=0.514  Sum_probs=74.8

Q ss_pred             ceeeEEeecC--ccCCeeEEEEEEeC--CEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeec
Q psy17820        101 KEGWLWKQGG--RYKSWKRRWFILND--KCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus       101 ~~G~L~k~~~--~~~~wk~r~fvL~~--~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      .+|||.|.++  ..++|++|||||.+  +.|+||+++.+..|.|.|+|.++.+...++. .+++|+|.+++         
T Consensus         1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~-~~~~F~i~t~~---------   70 (95)
T cd01265           1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE-EKGRFEIHSNN---------   70 (95)
T ss_pred             CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCC-CCCEEEEEcCC---------
Confidence            3699999986  36899999999974  5899999999999999999999766543332 47889988763         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                 |+|+|+|+|++|+++||.||+.
T Consensus        71 -----------r~y~l~A~s~~e~~~Wi~al~~   92 (95)
T cd01265          71 -----------EVIALKASSDKQMNYWLQALQS   92 (95)
T ss_pred             -----------cEEEEECCCHHHHHHHHHHHHh
Confidence                       7999999999999999999985

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.87  E-value=1.5e-21  Score=133.92  Aligned_cols=91  Identities=26%  Similarity=0.344  Sum_probs=74.7

Q ss_pred             cceeeEEeecCcc-----CCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEE-ecCC-------CCcceEEEE
Q psy17820        100 DKEGWLWKQGGRY-----KSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVRE-VHDR-------HKPHCFELF  164 (210)
Q Consensus       100 ~~~G~L~k~~~~~-----~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~-~~~~-------~~~~~f~i~  164 (210)
                      +++|+|.|++.+.     ++|++|||||.++.|+||+++.+  ..++|.|+|.++.+.. +.+.       .+.++|+|+
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~   80 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV   80 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence            4799999997432     39999999999999999998876  4799999999876544 2222       246788888


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +++                    ++||+.|+|++|+++||.||+++
T Consensus        81 t~~--------------------r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          81 HDE--------------------GTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             eCC--------------------CeEEEEcCCHHHHHHHHHHHHhC
Confidence            764                    69999999999999999999975

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.86  E-value=3.2e-21  Score=128.92  Aligned_cols=90  Identities=31%  Similarity=0.562  Sum_probs=80.3

Q ss_pred             ceeeEEeecCc-cCCeeEEEEEEeC----CEEEEeccCCCCCceeEEEeCCeEEEEecCC--CCcceEEEEeCCceeeee
Q psy17820        101 KEGWLWKQGGR-YKSWKRRWFILND----KCLYYFEYTTDKEPRGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKA  173 (210)
Q Consensus       101 ~~G~L~k~~~~-~~~wk~r~fvL~~----~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~--~~~~~f~i~~~~~~~~~~  173 (210)
                      +.|||.|+++. .+.||+|||+|.+    +.|+||+++.+..|+|.|+|+.+.|.++.+.  ++++||+|+.+..     
T Consensus         1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~-----   75 (98)
T cd01245           1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERAL-----   75 (98)
T ss_pred             CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCC-----
Confidence            36999999987 8999999999987    9999999999999999999999988888776  8899999987742     


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   +..|+++|++ +|+++||.+|++
T Consensus        76 -------------~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          76 -------------PTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             -------------CeEEEEeCCH-HHHHHHHHHHhc
Confidence                         2488999988 999999999986

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.85  E-value=1.3e-20  Score=128.54  Aligned_cols=90  Identities=29%  Similarity=0.598  Sum_probs=73.3

Q ss_pred             ceeeEEeecCccCCeeEEEEEEe--CCEEEEeccCCCCCceeEEEeCCeEEEEe-cCC-------CCcceEEEEeCCcee
Q psy17820        101 KEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKEPRGIIPLENIQVREV-HDR-------HKPHCFELFTSGFEF  170 (210)
Q Consensus       101 ~~G~L~k~~~~~~~wk~r~fvL~--~~~L~yy~~~~~~~~~~~i~L~~~~v~~~-~~~-------~~~~~f~i~~~~~~~  170 (210)
                      ++|||.|+|+..+.|++|||+|.  ++.|.||+++.+..|.|.|+|..++.... .+.       ...++|.|.++    
T Consensus         1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~----   76 (101)
T cd01235           1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS----   76 (101)
T ss_pred             CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC----
Confidence            58999999998999999999998  45999999998899999999998654432 111       23345665544    


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                      .|+|+|+|+|++|+++||.||+++
T Consensus        77 ----------------~r~~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          77 ----------------KRTYNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             ----------------CceEEEECCCHHHHHHHHHHHHhh
Confidence                            479999999999999999999863

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.85  E-value=1.7e-20  Score=126.65  Aligned_cols=88  Identities=31%  Similarity=0.537  Sum_probs=74.6

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCC------EEEEeccCCC-----CCceeEEEeCCeEEEE-ecCCCCcceEEEEeC
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDK------CLYYFEYTTD-----KEPRGIIPLENIQVRE-VHDRHKPHCFELFTS  166 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~------~L~yy~~~~~-----~~~~~~i~L~~~~v~~-~~~~~~~~~f~i~~~  166 (210)
                      +.++|||.|+    ++|+||||||+++      .|.||+++..     ..|.++|+|.+|.... .++..++++|.|.++
T Consensus         2 v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~   77 (101)
T cd01257           2 VRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTR   77 (101)
T ss_pred             ccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeC
Confidence            5689999996    8999999999987      8999999864     6799999999986543 334455789999887


Q ss_pred             CceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +                    ++|+|.|+|++|+++|+.+|..+
T Consensus        78 d--------------------r~f~l~aese~E~~~Wi~~i~~~  101 (101)
T cd01257          78 D--------------------EYFAVAAENEAEQDSWYQALLEL  101 (101)
T ss_pred             C--------------------ceEEEEeCCHHHHHHHHHHHhhC
Confidence            5                    69999999999999999999753

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.84  E-value=2.7e-20  Score=126.10  Aligned_cols=89  Identities=26%  Similarity=0.391  Sum_probs=71.0

Q ss_pred             ceeeEEeecCc---------cCCeeEEEEEEe-CCEEEEeccC-CCCCceeEEEeCCeEEEEec-C-CCCcceEEEEeCC
Q psy17820        101 KEGWLWKQGGR---------YKSWKRRWFILN-DKCLYYFEYT-TDKEPRGIIPLENIQVREVH-D-RHKPHCFELFTSG  167 (210)
Q Consensus       101 ~~G~L~k~~~~---------~~~wk~r~fvL~-~~~L~yy~~~-~~~~~~~~i~L~~~~v~~~~-~-~~~~~~f~i~~~~  167 (210)
                      ++|||.|.+++         .++|+||||||. ++.|+||++. .+..|.|.|+|..|..+... + .+.+++|.|.+++
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~   80 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPD   80 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECCC
Confidence            47999998642         569999999997 5677777665 46789999999987654422 2 2456899988774


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                          |+|+|.|+|++|+++||.+|..
T Consensus        81 --------------------R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          81 --------------------KEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             --------------------ceEEEEeCCHHHHHHHHHHHHh
Confidence                                7999999999999999999974

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.83  E-value=7e-20  Score=126.21  Aligned_cols=90  Identities=24%  Similarity=0.354  Sum_probs=72.2

Q ss_pred             ceeeEEeecCc----cCCeeEEEEEEeCCE-------EEEeccCCCCCceeEEEeCCeEEEEec----CC--CCcceEEE
Q psy17820        101 KEGWLWKQGGR----YKSWKRRWFILNDKC-------LYYFEYTTDKEPRGIIPLENIQVREVH----DR--HKPHCFEL  163 (210)
Q Consensus       101 ~~G~L~k~~~~----~~~wk~r~fvL~~~~-------L~yy~~~~~~~~~~~i~L~~~~v~~~~----~~--~~~~~f~i  163 (210)
                      ++|||.|+++.    .+.|++|||+|.++.       |.||+++.+..|.|.|+|..+.+....    ..  ...+.|.|
T Consensus         1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i   80 (108)
T cd01266           1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI   80 (108)
T ss_pred             CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence            48999999873    349999999999876       599999988999999999997654321    11  22355776


Q ss_pred             EeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      .++                    .|+|+|+|+|++|+++||.+|+++
T Consensus        81 ~t~--------------------~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          81 ETI--------------------VRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EeC--------------------CccEEEEECCHHHHHHHHHHHHhh
Confidence            654                    489999999999999999999864

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.83  E-value=2.2e-19  Score=119.91  Aligned_cols=89  Identities=33%  Similarity=0.707  Sum_probs=77.5

Q ss_pred             ceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC--CceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCC
Q psy17820        101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK--EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDS  178 (210)
Q Consensus       101 ~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~--~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~  178 (210)
                      ++|||.|+++..+.|++|||+|.++.|.||+++.+.  .|.+.|+|.++.+...  ...+++|.|.++++          
T Consensus         1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~--~~~~~~F~i~~~~~----------   68 (91)
T cd01246           1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISED--DSDDKCFTIDTGGD----------   68 (91)
T ss_pred             CeEEEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEEC--CCCCcEEEEEcCCC----------
Confidence            489999999888999999999999999999999877  8999999999876542  33478999987643          


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                               +.++|+|+|.+|+.+||.||+.+
T Consensus        69 ---------~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          69 ---------KTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             ---------CEEEEECCCHHHHHHHHHHHHhC
Confidence                     79999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.82  E-value=3.1e-19  Score=119.92  Aligned_cols=90  Identities=30%  Similarity=0.662  Sum_probs=77.5

Q ss_pred             ceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEEecCCC-CcceEEEEeCCceeeeeeec
Q psy17820        101 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRH-KPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus       101 ~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~~~~~~-~~~~f~i~~~~~~~~~~~~~  176 (210)
                      ++|||.|+++. .+.|++|||+|.++.|.||+++.+  ..+.+.|+|..+++...+... ++++|.|.+++         
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~---------   71 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT---------   71 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEcCC---------
Confidence            58999999865 789999999999999999998876  567889999988877665543 78999998764         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                 ++|+|+|+|++++++|+.||+.+
T Consensus        72 -----------~~~~f~a~s~~~~~~Wi~al~~~   94 (94)
T cd01250          72 -----------KTWHFQADSEEERDDWISAIQES   94 (94)
T ss_pred             -----------cEEEEECCCHHHHHHHHHHHhcC
Confidence                       69999999999999999999863

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.78  E-value=4.3e-18  Score=115.92  Aligned_cols=95  Identities=27%  Similarity=0.556  Sum_probs=69.6

Q ss_pred             cceeeEEeecCccCCeeEEEEEEe-CCEEEEeccCCCCCceeEEEeCCeEEEEe----cCCCCcceEEEEeCCceeeeee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTDKEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~-~~~L~yy~~~~~~~~~~~i~L~~~~v~~~----~~~~~~~~f~i~~~~~~~~~~~  174 (210)
                      +++|||.|+++..+.|++|||+|+ ++.|.||++.....+.+.++|.+..+...    .+..++++|.|...+.      
T Consensus         2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~------   75 (102)
T cd01241           2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQW------   75 (102)
T ss_pred             cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccC------
Confidence            589999999999999999999999 78888888765544457788877665322    2335668899873210      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                              ..+..|  +|+|+|++|+++||.||+.+
T Consensus        76 --------~~~~~r--~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          76 --------TTVIER--TFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             --------CcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence                    001124  34689999999999999875

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.77  E-value=1.2e-17  Score=112.07  Aligned_cols=77  Identities=17%  Similarity=0.338  Sum_probs=65.5

Q ss_pred             CCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEE-ecCC--CCcceEEEEeCCceeeeeeecCCCCceeeecceE
Q psy17820        113 KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE-VHDR--HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV  189 (210)
Q Consensus       113 ~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~-~~~~--~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~  189 (210)
                      .+||+|||+|.+..|+||+++. ..|.|.|+|..+..+. +.+.  +.+++|+|++++                    ++
T Consensus        19 ~n~KkRwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~--------------------r~   77 (98)
T cd01244          19 LHFKKRYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED--------------------DT   77 (98)
T ss_pred             cCCceeEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC--------------------Ce
Confidence            5899999999999999999875 6899999999876544 3332  456899998874                    69


Q ss_pred             EEEEcCCHHHHHHHHHHHhcC
Q psy17820        190 YRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       190 ~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      |||+|+|++|+++||.||+.+
T Consensus        78 ~yi~a~s~~E~~~Wi~al~k~   98 (98)
T cd01244          78 MQLQFEAPVEATDWLNALEKQ   98 (98)
T ss_pred             EEEECCCHHHHHHHHHHHhcC
Confidence            999999999999999999874

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.76  E-value=2.1e-17  Score=112.35  Aligned_cols=91  Identities=37%  Similarity=0.779  Sum_probs=81.5

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC---CCCceeEEEeCCeEEEEecCC------CCcceEEEEeCCcee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT---DKEPRGIIPLENIQVREVHDR------HKPHCFELFTSGFEF  170 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~---~~~~~~~i~L~~~~v~~~~~~------~~~~~f~i~~~~~~~  170 (210)
                      .++|||.+++...+.|++|||+|.++.|++|+++.   ...+.+.|+|.++.|....+.      ..+++|.|..+.+  
T Consensus         2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~--   79 (104)
T PF00169_consen    2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNG--   79 (104)
T ss_dssp             EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTS--
T ss_pred             EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCC--
Confidence            47999999998788999999999999999999987   578999999999988876554      5789999988863  


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                       +.++|+|+|++++..|+.+|+.
T Consensus        80 -----------------~~~~~~~~s~~~~~~W~~~i~~  101 (104)
T PF00169_consen   80 -----------------KSYLFSAESEEERKRWIQAIQK  101 (104)
T ss_dssp             -----------------EEEEEEESSHHHHHHHHHHHHH
T ss_pred             -----------------cEEEEEcCCHHHHHHHHHHHHH
Confidence                             6999999999999999999985

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.75  E-value=1.7e-17  Score=115.33  Aligned_cols=104  Identities=26%  Similarity=0.471  Sum_probs=76.4

Q ss_pred             cceeeEEee--cCccCCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeEEEEec-----CCCCcceEEEEeCCc-
Q psy17820        100 DKEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVH-----DRHKPHCFELFTSGF-  168 (210)
Q Consensus       100 ~~~G~L~k~--~~~~~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~-----~~~~~~~f~i~~~~~-  168 (210)
                      ...|||...  .++.++|++|||+|.|+.|+||+.+.+   ..|.|.|+|.+|.+..+.     ...++++|.|..... 
T Consensus         2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~   81 (122)
T cd01263           2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK   81 (122)
T ss_pred             ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence            468999863  267889999999999999999997766   679999999998876663     337889999864311 


Q ss_pred             ------eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        169 ------EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       169 ------~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                            ..+-.|+.      +.. ..-++|+|||.+|+++|+.||++.
T Consensus        82 ~~~~~~~~~~~~~~------~~~-r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          82 METDDETLVSQCRR------GIE-RLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             ccccccceeeccCC------cee-EEEEEEecCCHHHHHHHHHHHhcC
Confidence                  11111111      001 123689999999999999999863

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.74  E-value=2.9e-17  Score=106.77  Aligned_cols=97  Identities=26%  Similarity=0.514  Sum_probs=83.7

Q ss_pred             cceeeEEeec-CccC-CeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC--CCCcceEEEEeCCceeeeeee
Q psy17820        100 DKEGWLWKQG-GRYK-SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus       100 ~~~G~L~k~~-~~~~-~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ++.|||...+ +.++ +-|+|||||+..+|+||++.++++|++.|+|.+..+..+++  .+++++|+|..+++       
T Consensus         2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~-------   74 (110)
T cd01256           2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDG-------   74 (110)
T ss_pred             eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcc-------
Confidence            5789998876 3333 57999999999999999999999999999999999999887  58889999998764       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                           ..+....+++.|+|+|+++++.|...+-
T Consensus        75 -----rnvykd~k~lel~~~~~e~vdswkasfl  102 (110)
T cd01256          75 -----RNVYKDYKQLELGCETLEEVDSWKASFL  102 (110)
T ss_pred             -----cccccchheeeecCCCHHHHHHHHHHHH
Confidence                 4456667899999999999999988764

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.69  E-value=4.7e-16  Score=106.50  Aligned_cols=91  Identities=22%  Similarity=0.364  Sum_probs=70.7

Q ss_pred             ceeeEEeec--------CccCCeeEEEEEEeCCEEEEeccCCCC--Ccee--EEEeCCeEEEEecC-CCCcceEEEEeCC
Q psy17820        101 KEGWLWKQG--------GRYKSWKRRWFILNDKCLYYFEYTTDK--EPRG--IIPLENIQVREVHD-RHKPHCFELFTSG  167 (210)
Q Consensus       101 ~~G~L~k~~--------~~~~~wk~r~fvL~~~~L~yy~~~~~~--~~~~--~i~L~~~~v~~~~~-~~~~~~f~i~~~~  167 (210)
                      ++|+|..+.        ...+.|++|||+|.++.|++|+++...  ...+  .|+|.++.+...++ .+++++|.|..++
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~   80 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPD   80 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecC
Confidence            368887541        135689999999999999999987543  2333  67777777766554 4678999998665


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +                   +.|+|+|+|++++.+|+.||+.|
T Consensus        81 ~-------------------~~~~f~a~s~e~~~~Wi~aL~~~  104 (104)
T cd01253          81 G-------------------AEFLFQAPDEEEMSSWVRALKSA  104 (104)
T ss_pred             C-------------------CEEEEECCCHHHHHHHHHHHhcC
Confidence            3                   69999999999999999999876

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.66  E-value=1.7e-15  Score=102.93  Aligned_cols=91  Identities=23%  Similarity=0.337  Sum_probs=76.4

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC-----CCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeee
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT-----DKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~-----~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~  173 (210)
                      .+++|||.|.++..+.|+.|||.|-++.|.|++...     ...+.+.|+|.++.|....+...+++|.|..+.      
T Consensus         2 ~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~------   75 (101)
T cd01219           2 LLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNLERPHSFLVSGKQ------   75 (101)
T ss_pred             cccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCCCCcCceEEEecCC------
Confidence            368999999998888999999999988999998532     234567899999988776555678999987653      


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ++++|+|+|++|+++||.||+.
T Consensus        76 --------------rsf~l~A~s~eEk~~W~~ai~~   97 (101)
T cd01219          76 --------------RCLELQARTQKEKNDWVQAIFS   97 (101)
T ss_pred             --------------cEEEEEcCCHHHHHHHHHHHHH
Confidence                          7999999999999999999985

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.66  E-value=2.6e-15  Score=98.01  Aligned_cols=85  Identities=21%  Similarity=0.531  Sum_probs=70.1

Q ss_pred             eeEEeec-CccCCeeEEEEEE--eCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCC
Q psy17820        103 GWLWKQG-GRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSE  179 (210)
Q Consensus       103 G~L~k~~-~~~~~wk~r~fvL--~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~  179 (210)
                      |||.|+. ...++|++|||+|  ..+.|.||.++++....|.|+|..+.+... .  ....+.|.+.             
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~-~--~~~~I~idsg-------------   64 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN-K--KSRRIDIDSG-------------   64 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec-C--CCCEEEEEcC-------------
Confidence            8988886 4678999999999  999999999998888899999998766443 2  2345666543             


Q ss_pred             CceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        180 GKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       180 ~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                             ...|+|.|.|+++.+.|+.||+.+
T Consensus        65 -------~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   65 -------DEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             -------CeEEEEEcCCHHHHHHHHHHHHhc
Confidence                   369999999999999999999875

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.62  E-value=2.8e-15  Score=101.74  Aligned_cols=73  Identities=14%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCcce-----------------ecccceeEEEe
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGR-----------------YKSWKRRWFIL   66 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~-----------------~~~~~~~~~~~   66 (210)
                      +.|+|||.|+|+..++|+||||||+++.|.||+++++..+ +.|  ..+.+.                 ..+.+.+++.+
T Consensus         2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A   81 (100)
T cd01233           2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQA   81 (100)
T ss_pred             cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEc
Confidence            5799999999999999999999999999999999887653 222  222221                 12334455666


Q ss_pred             chh--HHHHHHhhhc
Q psy17820         67 NDK--CLYYFEYTTD   79 (210)
Q Consensus        67 ~~~--~~~~~~~i~~   79 (210)
                      +++  +..|+.+|+.
T Consensus        82 ~s~~e~~~Wi~ai~~   96 (100)
T cd01233          82 LSDKEMIDWLYALNP   96 (100)
T ss_pred             CCHHHHHHHHHHhhh
Confidence            554  8899998864

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.62  E-value=1.1e-14  Score=100.83  Aligned_cols=90  Identities=23%  Similarity=0.396  Sum_probs=72.5

Q ss_pred             ceeeEEeec-----C-----ccCCeeEEEEEEeCCEEEEeccCCC-------CCceeEEEeCCeEEEE-ecCCCCcceEE
Q psy17820        101 KEGWLWKQG-----G-----RYKSWKRRWFILNDKCLYYFEYTTD-------KEPRGIIPLENIQVRE-VHDRHKPHCFE  162 (210)
Q Consensus       101 ~~G~L~k~~-----~-----~~~~wk~r~fvL~~~~L~yy~~~~~-------~~~~~~i~L~~~~v~~-~~~~~~~~~f~  162 (210)
                      ++|+|..+-     +     +...|+++||||+++.|++|+++..       ......|.|.++.+.. .+..++++.|.
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~   81 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFR   81 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEE
Confidence            578887651     1     2458999999999999999999854       3345678888877544 34568899999


Q ss_pred             EEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        163 LFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       163 i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |.++++                   +.|.|+|.+.+||+.||.+|+.
T Consensus        82 L~~~~g-------------------~~~lfqA~~~ee~~~Wi~~I~~  109 (117)
T cd01230          82 LRTADW-------------------REFLFQTSSLKELQSWIERINV  109 (117)
T ss_pred             EEcCCC-------------------CEEEEECCCHHHHHHHHHHHHH
Confidence            998864                   6999999999999999999985

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.60  E-value=1e-14  Score=97.72  Aligned_cols=82  Identities=17%  Similarity=0.374  Sum_probs=63.4

Q ss_pred             cCCeeEEEEEEeCCEEEEeccCCCCC--ceeEEEeCCeEEEEec-CCCCcceEEEEeCCceeeeeeecCCCCceeeecce
Q psy17820        112 YKSWKRRWFILNDKCLYYFEYTTDKE--PRGIIPLENIQVREVH-DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT  188 (210)
Q Consensus       112 ~~~wk~r~fvL~~~~L~yy~~~~~~~--~~~~i~L~~~~v~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r  188 (210)
                      .++||+|||+|+++.|+||++..+..  |.+.|.|.+|.|..-. -..++++|.+..+..                .+++
T Consensus        17 ~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~----------------~~~r   80 (106)
T cd01237          17 LKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTA----------------EGMN   80 (106)
T ss_pred             hhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCc----------------cCCe
Confidence            56899999999999999999876644  5555666677665432 135678888876632                2358


Q ss_pred             EEEEEcCCHHHHHHHHHHHhc
Q psy17820        189 VYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       189 ~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|+|.|+|++++.+||.|++.
T Consensus        81 ~y~l~cdsEeqya~Wmaa~rl  101 (106)
T cd01237          81 EVWLRCDNEKQYAKWMAACRL  101 (106)
T ss_pred             EEEEECCCHHHHHHHHHHHHH
Confidence            999999999999999999974

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.59  E-value=2.8e-14  Score=100.03  Aligned_cols=77  Identities=14%  Similarity=0.440  Sum_probs=60.8

Q ss_pred             CeeEEEEEEeCCEEEEeccCCCCCceeEEEeCC-eEEEEecC------------CCCcceEEEEeCCceeeeeeecCCCC
Q psy17820        114 SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLEN-IQVREVHD------------RHKPHCFELFTSGFEFIKACKTDSEG  180 (210)
Q Consensus       114 ~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~-~~v~~~~~------------~~~~~~f~i~~~~~~~~~~~~~~~~~  180 (210)
                      .|++|||+|+++.|.||+++.+..++++|.|.. ..|.....            .+..++|.|                 
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------   94 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKI-----------------   94 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEE-----------------
Confidence            699999999999999999999989999999964 34443222            123344554                 


Q ss_pred             ceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        181 KVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       181 ~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                         .+++|+|.|.|+|+.++++|+.+|+.+
T Consensus        95 ---~t~~R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          95 ---TNSNRSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             ---EcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence               444699999999999999999999853

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.58  E-value=4.4e-15  Score=101.24  Aligned_cols=72  Identities=24%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             eeeEEEeeCCC-CCCceeEEEEEeCCEEEEEeecCCccc-ccccCC------cc-----------------eecccceeE
Q psy17820          9 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENS------SG-----------------RYKSWKRRW   63 (210)
Q Consensus         9 ~~G~L~K~g~~-~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~------~~-----------------~~~~~~~~~   63 (210)
                      |+|||.|+|+. .++||||||||+++.|+||+++.+..+ +.|...      ++                 ...+.+.++
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~   80 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFL   80 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCCeEEE
Confidence            68999999995 699999999999999999999877543 333211      11                 011234455


Q ss_pred             EEechh--HHHHHHhhhcC
Q psy17820         64 FILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~   80 (210)
                      +.+++.  +..|+++|...
T Consensus        81 l~a~s~~e~~~Wi~ai~~v   99 (103)
T cd01251          81 FACETEQDRREWIAAFQNV   99 (103)
T ss_pred             EECCCHHHHHHHHHHHHHH
Confidence            666554  88999988754

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>KOG0930|consensus

Probab=99.58  E-value=1.8e-15  Score=116.44  Aligned_cols=52  Identities=71%  Similarity=1.404  Sum_probs=45.8

Q ss_pred             CCCCCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCc
Q psy17820          2 HTFFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSS   53 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~   53 (210)
                      |||.++..+|||.|+|+ ..++||||||+|+++||+||.-.+|++| ++|...+
T Consensus       255 htffnpdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeN  308 (395)
T KOG0930|consen  255 HTFFNPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLEN  308 (395)
T ss_pred             hhccCccccceeeeecCCcccchhheeEEeecceeeeeeeccCCCCCcceeccc
Confidence            78999999999999999 7899999999999999999999999886 4544443

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.58  E-value=1.9e-14  Score=99.46  Aligned_cols=103  Identities=25%  Similarity=0.375  Sum_probs=49.9

Q ss_pred             ceeeEEeecCc-cCCeeEEEEEEe-CCEEEEeccCCCCCceeEEEeCCe-------EEEEecCCCCcceEEEEeCCceee
Q psy17820        101 KEGWLWKQGGR-YKSWKRRWFILN-DKCLYYFEYTTDKEPRGIIPLENI-------QVREVHDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus       101 ~~G~L~k~~~~-~~~wk~r~fvL~-~~~L~yy~~~~~~~~~~~i~L~~~-------~v~~~~~~~~~~~f~i~~~~~~~~  171 (210)
                      ++|||+|++.. .++|++|||+|. ++.|.||+.+.+.. .+.|..+..       .+......   .........  ..
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~   74 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKK-DVRIIGEESSRVIRKGDWSISRRS---SRIQGIKDK--NP   74 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GG---GT-EEEES---T-
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccc-cccccccchhceEeecccCccccc---ccccccccC--Cc
Confidence            58999999987 889999999999 99999999943211 111111100       00000000   000000000  00


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +.+.+. ....+.++.++|+|.|++.+|+.+||+||++|
T Consensus        75 ~~~~~~-~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   75 FGEIHL-KVFSIFTPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             -SS-SS-EEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             ccCcCC-CCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            111110 11123455689999999999999999999975

>smart00233 PH Pleckstrin homology domain

Probab=99.56  E-value=1.3e-13  Score=92.45  Aligned_cols=92  Identities=42%  Similarity=0.848  Sum_probs=77.9

Q ss_pred             cceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeEEEEecCC---CCcceEEEEeCCceeee
Q psy17820        100 DKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDR---HKPHCFELFTSGFEFIK  172 (210)
Q Consensus       100 ~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~~~---~~~~~f~i~~~~~~~~~  172 (210)
                      .++|||.++.. ....|+++||+|.++.|.+|++...   ..+.+.|+|.++.+....+.   ..+++|.|....+    
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~----   77 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADR----   77 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCC----
Confidence            57999999886 6679999999999999999998765   56789999999987776554   4678999887642    


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                     ..++|+|+|++++..|+.+|+.+
T Consensus        78 ---------------~~~~f~~~s~~~~~~W~~~i~~~  100 (102)
T smart00233       78 ---------------RSYLLQAESEEEREEWVDALRKA  100 (102)
T ss_pred             ---------------ceEEEEcCCHHHHHHHHHHHHHh
Confidence                           48999999999999999999853

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.56  E-value=2.2e-14  Score=95.44  Aligned_cols=71  Identities=18%  Similarity=0.270  Sum_probs=50.0

Q ss_pred             eeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc---cccccCCc--cee------------cccceeEEEechh--
Q psy17820          9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS---ACLIENSS--GRY------------KSWKRRWFILNDK--   69 (210)
Q Consensus         9 ~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~---~~~i~~~~--~~~------------~~~~~~~~~~~~~--   69 (210)
                      .+|||.|+|...++|++|||||+++.|+||+++.+..   .+.|+...  +..            ...+..++.+++.  
T Consensus         1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e   80 (91)
T cd01247           1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQS   80 (91)
T ss_pred             CceEEEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHH
Confidence            4799999999999999999999999999999987743   23333222  111            1113344555444  


Q ss_pred             HHHHHHhhhc
Q psy17820         70 CLYYFEYTTD   79 (210)
Q Consensus        70 ~~~~~~~i~~   79 (210)
                      ...|+++|..
T Consensus        81 ~~~Wi~al~~   90 (91)
T cd01247          81 RLLWMDSVVR   90 (91)
T ss_pred             HHHHHHHHhh
Confidence            8889988864

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.55  E-value=1.1e-13  Score=93.24  Aligned_cols=89  Identities=29%  Similarity=0.512  Sum_probs=70.0

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC---CceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK---EPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~---~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~  175 (210)
                      +++|+|.|.++. +.|+|+||.+.+..||+.....+.   .+.+.|+|.++.|..+++. +.+++|+|..+.        
T Consensus         3 ikEG~L~K~~~k-~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~--------   73 (99)
T cd01220           3 IRQGCLLKLSKK-GLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQ--------   73 (99)
T ss_pred             eeEEEEEEEeCC-CCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCC--------
Confidence            589999998864 466766666666666655544333   4789999999999887663 568999998663        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  +++.|+|+|++|+.+|+.+|+.
T Consensus        74 ------------ks~~l~A~s~~Ek~~Wi~~i~~   95 (99)
T cd01220          74 ------------CAITVAASTRAEKEKWLADLSK   95 (99)
T ss_pred             ------------eEEEEECCCHHHHHHHHHHHHH
Confidence                        7999999999999999999985

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.54  E-value=3.2e-14  Score=97.49  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             CeeeEEEeeCCCC-----CCceeEEEEEeCCEEEEEeecCCc
Q psy17820          8 DKEGWLWKQGGRY-----KSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         8 ~~~G~L~K~g~~~-----~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      +++|||+|++++.     ++||+|||||++++|+||+++.+.
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~   42 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK   42 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc
Confidence            4799999998654     499999999999999999988763

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.52  E-value=5.3e-14  Score=94.52  Aligned_cols=72  Identities=22%  Similarity=0.307  Sum_probs=52.8

Q ss_pred             eeeEEEeeCC---CCCCceeEEEEEeCCEEEEEeecCCc-cc-ccccCCcc--------------------eecccceeE
Q psy17820          9 KEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDK-SA-CLIENSSG--------------------RYKSWKRRW   63 (210)
Q Consensus         9 ~~G~L~K~g~---~~~~wkrRwfvL~~~~L~Yy~~~~~~-~~-~~i~~~~~--------------------~~~~~~~~~   63 (210)
                      .+|||.|+||   ..|+|+||||+|++++|+||++..+. .+ ++|+...+                    ...+++.++
T Consensus         2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~   81 (101)
T cd01264           2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYI   81 (101)
T ss_pred             cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEE
Confidence            5899999999   88999999999999999999987543 22 44433322                    112334456


Q ss_pred             EEechh--HHHHHHhhhcC
Q psy17820         64 FILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~   80 (210)
                      +.++++  .++|+.+|..+
T Consensus        82 l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          82 LKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             EEeCCHHHHHHHHHHHHhh
Confidence            777766  88999988653

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.50  E-value=8.6e-14  Score=94.67  Aligned_cols=38  Identities=39%  Similarity=0.893  Sum_probs=33.7

Q ss_pred             eeeEEEeeCCCCCCceeEEEEEe--CCEEEEEeecCCccc
Q psy17820          9 KEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKSA   46 (210)
Q Consensus         9 ~~G~L~K~g~~~~~wkrRwfvL~--~~~L~Yy~~~~~~~~   46 (210)
                      ++|||.|+|+..++|++|||||+  ++.|.||+++++..+
T Consensus         1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~   40 (101)
T cd01235           1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE   40 (101)
T ss_pred             CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCcc
Confidence            58999999999999999999998  459999998877553

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.49  E-value=4.5e-13  Score=88.89  Aligned_cols=91  Identities=40%  Similarity=0.805  Sum_probs=76.4

Q ss_pred             ceeeEEeecCcc-CCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeee
Q psy17820        101 KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus       101 ~~G~L~k~~~~~-~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ++|||.++.... ..|+++||+|.++.|.+|+...+   ..+.+.|+|.++.+...... +.+++|.|....+       
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~-------   73 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDG-------   73 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCC-------
Confidence            479999887655 79999999999999999998766   67899999999877766554 3578999987642       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                  +.++|+|+|++|+..|+.+|+.+
T Consensus        74 ------------~~~~~~~~s~~~~~~W~~~l~~~   96 (96)
T cd00821          74 ------------RSYLLQAESEEEREEWIEALQSA   96 (96)
T ss_pred             ------------cEEEEEeCCHHHHHHHHHHHhcC
Confidence                        69999999999999999999864

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.48  E-value=1.4e-13  Score=92.45  Aligned_cols=72  Identities=22%  Similarity=0.387  Sum_probs=49.3

Q ss_pred             eeeEEEeeCC--CCCCceeEEEEEeC--CEEEEEeecCCccc-ccccCCcc--e------------ecccceeEEEechh
Q psy17820          9 KEGWLWKQGG--RYKSWKRRWFILND--KCLYYFEYTTDKSA-CLIENSSG--R------------YKSWKRRWFILNDK   69 (210)
Q Consensus         9 ~~G~L~K~g~--~~~~wkrRwfvL~~--~~L~Yy~~~~~~~~-~~i~~~~~--~------------~~~~~~~~~~~~~~   69 (210)
                      .+|||.|+|+  ..++|++|||||++  +.|+||+++.+..| +.|+...+  .            ..+++.+++.++++
T Consensus         1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~   80 (95)
T cd01265           1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALKASSD   80 (95)
T ss_pred             CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEECCCH
Confidence            3799999987  47999999999984  58999999887654 34433321  1            11223344555554


Q ss_pred             --HHHHHHhhhcC
Q psy17820         70 --CLYYFEYTTDK   80 (210)
Q Consensus        70 --~~~~~~~i~~~   80 (210)
                        +..|+++|...
T Consensus        81 ~e~~~Wi~al~~~   93 (95)
T cd01265          81 KQMNYWLQALQSK   93 (95)
T ss_pred             HHHHHHHHHHHhh
Confidence              88899888653

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.48  E-value=2e-13  Score=92.21  Aligned_cols=69  Identities=23%  Similarity=0.297  Sum_probs=49.0

Q ss_pred             CCCeeeEEEeeCCCCCCceeEEEEEeCC------EEEEEeecCC-----c-ccccccCCcce----------------ec
Q psy17820          6 NPDKEGWLWKQGGRYKSWKRRWFILNDK------CLYYFEYTTD-----K-SACLIENSSGR----------------YK   57 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~~~wkrRwfvL~~~------~L~Yy~~~~~-----~-~~~~i~~~~~~----------------~~   57 (210)
                      ++.++|||.|+    +.|+||||||+++      .|.||+++++     . +.++|...++.                ..
T Consensus         1 ~v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t   76 (101)
T cd01257           1 DVRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYT   76 (101)
T ss_pred             CccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEe
Confidence            47899999998    7999999999977      8999999864     2 33444433321                12


Q ss_pred             ccceeEEEechh--HHHHHHhhh
Q psy17820         58 SWKRRWFILNDK--CLYYFEYTT   78 (210)
Q Consensus        58 ~~~~~~~~~~~~--~~~~~~~i~   78 (210)
                      +.+.+++.++++  ++.|+.+|.
T Consensus        77 ~dr~f~l~aese~E~~~Wi~~i~   99 (101)
T cd01257          77 RDEYFAVAAENEAEQDSWYQALL   99 (101)
T ss_pred             CCceEEEEeCCHHHHHHHHHHHh
Confidence            233445666655  889998875

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.48  E-value=2.7e-13  Score=91.43  Aligned_cols=73  Identities=27%  Similarity=0.571  Sum_probs=50.2

Q ss_pred             CeeeEEEeeCCC----CCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCcce-------------eccc-ceeEEEe
Q psy17820          8 DKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGR-------------YKSW-KRRWFIL   66 (210)
Q Consensus         8 ~~~G~L~K~g~~----~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~-------------~~~~-~~~~~~~   66 (210)
                      .++|||.|+++.    .+.|++|||||+++.|+||+++++..+ +.|  ....+.             ..+. +.+++.+
T Consensus         1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a   80 (96)
T cd01260           1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAA   80 (96)
T ss_pred             CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEe
Confidence            379999999764    449999999999999999999887543 232  222221             1112 3345555


Q ss_pred             chh--HHHHHHhhhcC
Q psy17820         67 NDK--CLYYFEYTTDK   80 (210)
Q Consensus        67 ~~~--~~~~~~~i~~~   80 (210)
                      ++.  +..|+.+|+.+
T Consensus        81 ~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          81 ETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            554  88999988753

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.47  E-value=2.4e-13  Score=96.12  Aligned_cols=39  Identities=79%  Similarity=1.599  Sum_probs=35.4

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      .++|||.|+|+..+.|++|||||+++.|+||+++++..+
T Consensus         1 ~k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~   39 (125)
T cd01252           1 DREGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEP   39 (125)
T ss_pred             CcEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCc
Confidence            478999999999999999999999999999998876553

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.46  E-value=1.8e-12  Score=90.61  Aligned_cols=90  Identities=28%  Similarity=0.536  Sum_probs=62.5

Q ss_pred             ceeeEEeec-----C-----ccCCeeEEEEEEeCCEEEEeccCC--------------CCCceeEEEeCCeEEEEecC-C
Q psy17820        101 KEGWLWKQG-----G-----RYKSWKRRWFILNDKCLYYFEYTT--------------DKEPRGIIPLENIQVREVHD-R  155 (210)
Q Consensus       101 ~~G~L~k~~-----~-----~~~~wk~r~fvL~~~~L~yy~~~~--------------~~~~~~~i~L~~~~v~~~~~-~  155 (210)
                      ++|+|..+.     +     ...+|+..|+||+++.|++|+++.              ...|.+.|.|.++.+....+ .
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~   81 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT   81 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence            689988751     1     244899999999999999999731              12245669999887766544 5


Q ss_pred             CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       156 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++++|.|.+.++                   ..|.|+|.|++||.+||.+|+.
T Consensus        82 Kr~~VFrL~~~dg-------------------~e~Lfqa~~~~~m~~Wi~~IN~  116 (119)
T PF15410_consen   82 KRKNVFRLRTADG-------------------SEYLFQASDEEEMNEWIDAINY  116 (119)
T ss_dssp             TCSSEEEEE-TTS--------------------EEEEE-SSHHHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCC-------------------CEEEEECCCHHHHHHHHHHHhh
Confidence            7899999998865                   6899999999999999999974

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.43  E-value=6e-12  Score=83.97  Aligned_cols=93  Identities=40%  Similarity=0.735  Sum_probs=74.8

Q ss_pred             ceeeEEeecCcc----CCeeEEEEEEeCCEEEEeccCCCCCce-eEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeee
Q psy17820        101 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPR-GIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus       101 ~~G~L~k~~~~~----~~wk~r~fvL~~~~L~yy~~~~~~~~~-~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~  174 (210)
                      .+|||.+++...    ..|+++||+|.++.|.+|+.+....+. +.+++.+..+...++. +.+++|.|.....      
T Consensus         1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~------   74 (99)
T cd00900           1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDR------   74 (99)
T ss_pred             CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCC------
Confidence            368999887653    699999999999999999998776655 6899988876554332 4678999987631      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                 ..+.++|+|+|+++++.|+.+|+.+
T Consensus        75 -----------~~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          75 -----------GRRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             -----------CcEEEEEEcCCHHHHHHHHHHHhcC
Confidence                       1379999999999999999999864

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.42  E-value=7.9e-13  Score=89.63  Aligned_cols=71  Identities=23%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             eeeEEEeeCCC---------CCCceeEEEEEe-CCEEEEEeecC-C-cccccccCCcc-----------------eeccc
Q psy17820          9 KEGWLWKQGGR---------YKSWKRRWFILN-DKCLYYFEYTT-D-KSACLIENSSG-----------------RYKSW   59 (210)
Q Consensus         9 ~~G~L~K~g~~---------~~~wkrRwfvL~-~~~L~Yy~~~~-~-~~~~~i~~~~~-----------------~~~~~   59 (210)
                      ++|||.|.+++         .++||||||||+ ++.|+||++.. + ...+.|+...+                 ...+.
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~   80 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPD   80 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECCC
Confidence            58999999874         579999999997 56888876552 3 33444432221                 12234


Q ss_pred             ceeEEEechh--HHHHHHhhhc
Q psy17820         60 KRRWFILNDK--CLYYFEYTTD   79 (210)
Q Consensus        60 ~~~~~~~~~~--~~~~~~~i~~   79 (210)
                      +.+++.++++  ++.|++++..
T Consensus        81 R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          81 KEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             ceEEEEeCCHHHHHHHHHHHHh
Confidence            5566777665  9999998865

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.40  E-value=8.8e-13  Score=90.76  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=48.3

Q ss_pred             eeeEEEeeCC----CCCCceeEEEEEeCCE-------EEEEeecCCccc-ccccCCcc--e-------------------
Q psy17820          9 KEGWLWKQGG----RYKSWKRRWFILNDKC-------LYYFEYTTDKSA-CLIENSSG--R-------------------   55 (210)
Q Consensus         9 ~~G~L~K~g~----~~~~wkrRwfvL~~~~-------L~Yy~~~~~~~~-~~i~~~~~--~-------------------   55 (210)
                      ++|||.|+|+    ..++|+||||||+++.       |.||+++.+..+ +.|....+  .                   
T Consensus         1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i   80 (108)
T cd01266           1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI   80 (108)
T ss_pred             CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence            5899999998    3459999999999875       699998876543 33332221  1                   


Q ss_pred             ecccceeEEEechh--HHHHHHhhhc
Q psy17820         56 YKSWKRRWFILNDK--CLYYFEYTTD   79 (210)
Q Consensus        56 ~~~~~~~~~~~~~~--~~~~~~~i~~   79 (210)
                      ..+.+.+++.+++.  +..|+.+|..
T Consensus        81 ~t~~r~y~l~A~s~ee~~~Wi~~I~~  106 (108)
T cd01266          81 ETIVRDLYLVAKNEEEMTLWVNCICK  106 (108)
T ss_pred             EeCCccEEEEECCHHHHHHHHHHHHh
Confidence            01223445555554  9999998853

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=99.40  E-value=6.6e-13  Score=87.33  Aligned_cols=100  Identities=21%  Similarity=0.407  Sum_probs=70.7

Q ss_pred             cceeeEEeecC-ccCCeeEEEEEEeCCEEEEec----cCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeee
Q psy17820        100 DKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFE----YTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus       100 ~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~----~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~  174 (210)
                      .++|||.+.|+ ..+.||||||+|.+-.-+.|.    .+....|...+.|++.+|.-.++......+.|...++.+.|..
T Consensus         3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~a   82 (117)
T cd01234           3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNA   82 (117)
T ss_pred             ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhhe
Confidence            47999999997 788999999999854333221    2335678889999999998776543333445544444333322


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                               ......+.|+++++.|+..|+.||=
T Consensus        83 ---------vkegd~~~fa~~de~~r~lwvqa~y  107 (117)
T cd01234          83 ---------VKEGDELKFATDDENERHLWVQAMY  107 (117)
T ss_pred             ---------eccCcEEEEeccchHHHHHHHHHHH
Confidence                     1123589999999999999999984

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.36  E-value=5.5e-12  Score=85.84  Aligned_cols=36  Identities=36%  Similarity=0.768  Sum_probs=32.6

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEe-CCEEEEEeecC
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTT   42 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~-~~~L~Yy~~~~   42 (210)
                      ++++|||.|+|+..++|++|||+|+ ++.|.||++..
T Consensus         1 v~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~   37 (102)
T cd01241           1 VVKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKP   37 (102)
T ss_pred             CcEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCC
Confidence            4799999999999999999999999 78999888754

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.33  E-value=4e-12  Score=85.14  Aligned_cols=71  Identities=17%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             eeeEEEeeCCC-CCCceeEEEEEeC----CEEEEEeecCCcccc-cc--cCCccee---------------cccc--eeE
Q psy17820          9 KEGWLWKQGGR-YKSWKRRWFILND----KCLYYFEYTTDKSAC-LI--ENSSGRY---------------KSWK--RRW   63 (210)
Q Consensus         9 ~~G~L~K~g~~-~~~wkrRwfvL~~----~~L~Yy~~~~~~~~~-~i--~~~~~~~---------------~~~~--~~~   63 (210)
                      +.|||.|+|+. .|.||+|||+|.+    ++|+||++..+..|. +|  .++.|..               .+..  .+|
T Consensus         1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~   80 (98)
T cd01245           1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYY   80 (98)
T ss_pred             CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeEEE
Confidence            46999999997 9999999999986    999999999987652 32  2232221               1111  234


Q ss_pred             EEechh-HHHHHHhhhc
Q psy17820         64 FILNDK-CLYYFEYTTD   79 (210)
Q Consensus        64 ~~~~~~-~~~~~~~i~~   79 (210)
                      +.+.++ ...|+++|++
T Consensus        81 ~~a~~~er~~Wi~~l~~   97 (98)
T cd01245          81 SCRSSEERDKWIESLQA   97 (98)
T ss_pred             EeCCHHHHHHHHHHHhc
Confidence            554444 8899988864

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.29  E-value=1.8e-11  Score=81.40  Aligned_cols=36  Identities=36%  Similarity=0.891  Sum_probs=33.7

Q ss_pred             eeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         9 ~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      ++|||.|+++..+.|++|||||+++.|+||+++++.
T Consensus         1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~   36 (91)
T cd01246           1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSM   36 (91)
T ss_pred             CeEEEEEecccCCCceeeEEEEECCEEEEEecCccC
Confidence            589999999988999999999999999999999765

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.28  E-value=1.8e-11  Score=84.63  Aligned_cols=34  Identities=50%  Similarity=1.065  Sum_probs=25.9

Q ss_pred             eeeEEEeeCCC-CCCceeEEEEEe-CCEEEEEeecC
Q psy17820          9 KEGWLWKQGGR-YKSWKRRWFILN-DKCLYYFEYTT   42 (210)
Q Consensus         9 ~~G~L~K~g~~-~~~wkrRwfvL~-~~~L~Yy~~~~   42 (210)
                      ++|||.|.+.. .++||+|||+|. ++.|+||+.+.
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~   36 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPR   36 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS--
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeeccc
Confidence            68999999996 899999999999 99999999943

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.22  E-value=5.2e-11  Score=79.98  Aligned_cols=69  Identities=12%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             eEEEeeCC----CCCCceeEEEEEeCCEEEEEeecCCcccccccCCcce------------------ecccceeEEEech
Q psy17820         11 GWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGR------------------YKSWKRRWFILND   68 (210)
Q Consensus        11 G~L~K~g~----~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~   68 (210)
                      |.|.|++.    ..++||+|||+|++..|+||+++.+...+.|+...+.                  ..+.+.+|+.+++
T Consensus         5 ~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s   84 (98)
T cd01244           5 LQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEA   84 (98)
T ss_pred             cEEEEcccCCCccCcCCceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCC
Confidence            56677664    2479999999999999999999887665665544432                  1223445777766


Q ss_pred             h--HHHHHHhhhc
Q psy17820         69 K--CLYYFEYTTD   79 (210)
Q Consensus        69 ~--~~~~~~~i~~   79 (210)
                      .  ...|+.+++.
T Consensus        85 ~~E~~~Wi~al~k   97 (98)
T cd01244          85 PVEATDWLNALEK   97 (98)
T ss_pred             HHHHHHHHHHHhc
Confidence            5  8899988864

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.21  E-value=9e-11  Score=78.46  Aligned_cols=35  Identities=40%  Similarity=0.937  Sum_probs=32.2

Q ss_pred             eeeEEEeeCCC-CCCceeEEEEEeCCEEEEEeecCC
Q psy17820          9 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         9 ~~G~L~K~g~~-~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      ++|||.|+++. .+.|++|||||+++.|.||+++.+
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~   36 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKD   36 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcc
Confidence            68999999875 899999999999999999998875

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0248|consensus

Probab=99.21  E-value=7.9e-12  Score=106.57  Aligned_cols=181  Identities=17%  Similarity=0.234  Sum_probs=108.6

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc---cccccCCcc--e-----------ecccceeEEEechh-
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS---ACLIENSSG--R-----------YKSWKRRWFILNDK-   69 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~---~~~i~~~~~--~-----------~~~~~~~~~~~~~~-   69 (210)
                      ..++||+.+.+...+.|+||||||+.++++||+..++..   ...++...+  .           ...+..+++..++. 
T Consensus       249 ~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s~~  328 (936)
T KOG0248|consen  249 MEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTESER  328 (936)
T ss_pred             hhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeeccchhHHhhhhhhceeEEEeccChh
Confidence            367899999998889999999999999999999887743   122222221  0           11223334444333 


Q ss_pred             -HHHHHHhhhcCCccccCCCCCCccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeE
Q psy17820         70 -CLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ  148 (210)
Q Consensus        70 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~  148 (210)
                       ..+|...+.+. +.+.+.-.......--.+..+|||.+.+.+.+  ++.||.|.+-.++||++..+..|.|..++....
T Consensus       329 lt~dw~~iL~~~-iKv~~~~~~a~~~~p~~~~~~GwlT~vk~g~s--kkv~~alv~~~~~~~k~~~d~rp~g~l~~~~~h  405 (936)
T KOG0248|consen  329 TTHDWVTILSAA-IKATTLREMASRVTPIDASISGWLTRVKCGLS--KKVFAALVNQKLMFFKNSNDLVPNGFLCLQEKH  405 (936)
T ss_pred             hhhhhHHHHHHH-HHHHhccchhhhcCCCCCCcCcceeeeccccc--eeeeeeeeeeeeEEeecccccccccccchhhhh
Confidence             33333322111 11100000000011123446999999986555  899999999999999999999999998876432


Q ss_pred             EEEecCC-----------CC----cceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        149 VREVHDR-----------HK----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       149 v~~~~~~-----------~~----~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      +..++..           ++    .++.-++                  ..+++.++||.-.+.++.+.|+..+.
T Consensus       406 ~~ee~~s~~sde~~e~~~~r~l~~~~~~l~~------------------~~~~~~p~yLi~~t~e~k~~wly~l~  462 (936)
T KOG0248|consen  406 NGTEEYSGSSDEQLETTKEHPQRKNNDSLCV------------------QIANEDPVYLILRTSEDKEKWLYYLK  462 (936)
T ss_pred             cceeeccCCchhhhhhhcCccccccCceEEe------------------ccCCCCCEEEEeeeccccceeeeeeh
Confidence            2221111           11    1222222                  23345688888888888888876654

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=99.19  E-value=3.3e-10  Score=75.86  Aligned_cols=90  Identities=20%  Similarity=0.373  Sum_probs=64.8

Q ss_pred             ceeeEEeecC--ccCCeeEEEEEEeCC--EEE--EeccC-----C-CCCceeEEEeCCeEEEEecCCCCcceEEEEeCCc
Q psy17820        101 KEGWLWKQGG--RYKSWKRRWFILNDK--CLY--YFEYT-----T-DKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF  168 (210)
Q Consensus       101 ~~G~L~k~~~--~~~~wk~r~fvL~~~--~L~--yy~~~-----~-~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~  168 (210)
                      ++|||+.+..  ....|.+.||..+..  .+.  .+...     . .......|.|..|++...+..++++||+|..+..
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~dRRFCFei~~~~~   80 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESIDKRFCFDVEVEEK   80 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCccceeeEeeeecCC
Confidence            5799998863  333899999998653  322  12221     1 1122244777788888888889999999987753


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                        ..++.|+|+|+.++..||.||.
T Consensus        81 ------------------~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          81 ------------------PGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             ------------------CCeEEEEecCHHHHHHHHHhhc
Confidence                              2479999999999999999985

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=99.15  E-value=2.4e-10  Score=76.81  Aligned_cols=95  Identities=25%  Similarity=0.456  Sum_probs=68.4

Q ss_pred             ceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCcee---EEEeCCeEEEEec------CCCCcceEEEEeCCceee
Q psy17820        101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRG---IIPLENIQVREVH------DRHKPHCFELFTSGFEFI  171 (210)
Q Consensus       101 ~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~---~i~L~~~~v~~~~------~~~~~~~f~i~~~~~~~~  171 (210)
                      .+|+|+.+..+.++||++||+|+...|+|.......++..   ...+++..|-...      ....+++|.|.++..+. 
T Consensus         2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~-   80 (114)
T cd01259           2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQS-   80 (114)
T ss_pred             ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCc-
Confidence            5899999988889999999999999999987665555443   2444554443322      12467899987764210 


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                  .+..-.-+|+||+++.+..|+.||+
T Consensus        81 ------------~~s~~ik~lCaeDe~t~~~W~ta~R  105 (114)
T cd01259          81 ------------KGSQSIKYLCAEDLPTLDRWLTAIR  105 (114)
T ss_pred             ------------ccchhheeeccCCHHHHHHHHHHHH
Confidence                        0112356899999999999999997

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.11  E-value=2.5e-10  Score=74.65  Aligned_cols=70  Identities=16%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             eEEEeeCC-CCCCceeEEEEE--eCCEEEEEeecCCcc-cc--cccCCcceec-ccceeEEEe---------ch--hHHH
Q psy17820         11 GWLWKQGG-RYKSWKRRWFIL--NDKCLYYFEYTTDKS-AC--LIENSSGRYK-SWKRRWFIL---------ND--KCLY   72 (210)
Q Consensus        11 G~L~K~g~-~~~~wkrRwfvL--~~~~L~Yy~~~~~~~-~~--~i~~~~~~~~-~~~~~~~~~---------~~--~~~~   72 (210)
                      |||.|+.. ..++|+||||||  +++.|+||.++++.. .+  .|..+.|..+ .++.+.|.+         .+  .-+.
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~~~~~I~idsg~~i~hLKa~s~~~f~~   80 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANKKSRRIDIDSGDEIWHLKAKSQEDFQR   80 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecCCCCEEEEEcCCeEEEEEcCCHHHHHH
Confidence            89999866 689999999999  899999999887742 22  3444444322 223333322         22  2778


Q ss_pred             HHHhhhcC
Q psy17820         73 YFEYTTDK   80 (210)
Q Consensus        73 ~~~~i~~~   80 (210)
                      |..++..+
T Consensus        81 Wv~aL~~a   88 (89)
T PF15409_consen   81 WVSALQKA   88 (89)
T ss_pred             HHHHHHhc
Confidence            88877654

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=99.10  E-value=2.5e-09  Score=71.86  Aligned_cols=91  Identities=20%  Similarity=0.508  Sum_probs=68.3

Q ss_pred             ceeeEEeecC-c---cCCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCC-eEEEEe--------cCCCCcceEEEE
Q psy17820        101 KEGWLWKQGG-R---YKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLEN-IQVREV--------HDRHKPHCFELF  164 (210)
Q Consensus       101 ~~G~L~k~~~-~---~~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~-~~v~~~--------~~~~~~~~f~i~  164 (210)
                      .+|||..... +   .++|++.|+||.+..|++|..+++   ..|..+++|.. +.|..+        ...+-|..|+|.
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~   81 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL   81 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence            5899976543 2   359999999999999999998765   34777788864 333332        223567788887


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..+.                  .++++|-|+++.|.+.|+.||.+
T Consensus        82 ~~~~------------------~~~lllLA~s~~ek~kWV~~L~~  108 (112)
T cd01242          82 YANE------------------ARDLLLLAPQTDEQNKWVSRLVK  108 (112)
T ss_pred             eCCc------------------cceEEEEeCCchHHHHHHHHHHH
Confidence            6532                  37899999999999999999964

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117|consensus

Probab=99.06  E-value=6.6e-10  Score=97.15  Aligned_cols=173  Identities=17%  Similarity=0.249  Sum_probs=111.6

Q ss_pred             CCCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCcc-cccccCCcc------eecc-----cceeEEE-echh
Q psy17820          4 FFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKS-ACLIENSSG------RYKS-----WKRRWFI-LNDK   69 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~-~~~i~~~~~------~~~~-----~~~~~~~-~~~~   69 (210)
                      ..++.++|||.|.+. +...++|||..+.+..|.||.+.++.- +++|....+      +|..     ..+.|+. .++.
T Consensus        84 isp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~~i~va~is~v~~~gd~kfevitn~r~fvfr~e~~  163 (1186)
T KOG1117|consen   84 ISPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKGPIPVAAISAVRNFGDNKFEVITNQRTFVFRQESE  163 (1186)
T ss_pred             cCchhhcchhhccCcCcccccCccceecCCCCccccCCCCCCCCCCceeeehhhhhhhccCceEEEEecceEEEEecCCc
Confidence            467899999999987 678899999999999999999998864 234433332      1111     1112221 1221


Q ss_pred             --HHHHHHhhhcC--CccccCCCCCCccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCC---ceeEE
Q psy17820         70 --CLYYFEYTTDK--PFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE---PRGII  142 (210)
Q Consensus        70 --~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~---~~~~i  142 (210)
                        -..|.......  +..+.+     .......|.+.|||...|.+    .+-|.+|.++.+..|++.++-.   ....|
T Consensus       164 ~~r~~w~s~l~s~~~~Q~l~~-----ap~pp~pP~raG~lelrg~k----ak~f~~vsp~~vqL~knlq~f~lgigit~I  234 (1186)
T KOG1117|consen  164 GERFIWVSPLQSALKEQRLRS-----APPPPVPPPRAGWLELRGFK----AKLFVAVSPERVQLYKNLQSFPLGIGITFI  234 (1186)
T ss_pred             ccceeeechhhhcchhhhhcc-----CCCCCCCCCCccchhccccc----cceeEEecCceeeeecccccccCCceeEEE
Confidence              11222221111  000100     00111237899999988754    4588999999999999987643   23335


Q ss_pred             EeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        143 PLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       143 ~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++.++|..+..    -.|.+.++                    .|.+-|.|+++.+++.|+.|++.
T Consensus       235 ~m~~~nvk~vdr----~sfdl~Tp--------------------~r~fsftaese~erq~w~ea~q~  277 (1186)
T KOG1117|consen  235 YMEVSNVKEVDR----RSFDLNTP--------------------YREFSFTAESETERQIWGEAPQP  277 (1186)
T ss_pred             eccccccccccc----ceeccCCc--------------------eeeeeeeeccchhhhhhhhccCc
Confidence            666666555433    36777766                    47999999999999999999875

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=99.05  E-value=4e-09  Score=71.30  Aligned_cols=68  Identities=28%  Similarity=0.513  Sum_probs=55.8

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCe-EEEEe-----cCCCCcceEEEEeCC
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREV-----HDRHKPHCFELFTSG  167 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~-~v~~~-----~~~~~~~~f~i~~~~  167 (210)
                      .++|||-.-...-+.|||+|++|....|.+|++++...+...|+|..+ .|...     +....++||+|.+..
T Consensus         1 lkEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~   74 (117)
T cd01239           1 LKEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT   74 (117)
T ss_pred             CccceEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC
Confidence            379999887766689999999999999999999999999999999875 34322     123578999999864

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=99.03  E-value=6.7e-09  Score=70.88  Aligned_cols=97  Identities=25%  Similarity=0.396  Sum_probs=68.6

Q ss_pred             cceeeEEeec--CccCCeeEEEEEEeCCEEEEeccCCCC------CceeEEEeC--CeEEEEec--------CCCCcceE
Q psy17820        100 DKEGWLWKQG--GRYKSWKRRWFILNDKCLYYFEYTTDK------EPRGIIPLE--NIQVREVH--------DRHKPHCF  161 (210)
Q Consensus       100 ~~~G~L~k~~--~~~~~wk~r~fvL~~~~L~yy~~~~~~------~~~~~i~L~--~~~v~~~~--------~~~~~~~f  161 (210)
                      ..+|||....  +..++|+++|+||.+..|++|..+++.      .+...++|+  .++|..+.        ..+-|..|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            3699997543  344699999999999999999976642      345667884  35555442        22567788


Q ss_pred             EEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        162 ELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|....-             ....+..+.+|-|+|+.|++.|+.||..
T Consensus        83 ~I~~~~~-------------~~~~~~~~~~~lA~s~~eK~kWV~aL~~  117 (122)
T cd01243          83 RVTTSQI-------------SASSSKCSTLMLADTEEEKSKWVGALSE  117 (122)
T ss_pred             EEEEecc-------------cCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence            8875420             0112346889999999999999999863

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.03  E-value=1.2e-09  Score=73.77  Aligned_cols=37  Identities=43%  Similarity=0.908  Sum_probs=34.4

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      +.++|||.|++...+.|++|||||+++.|.||+++.+
T Consensus         1 ~~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~   37 (104)
T PF00169_consen    1 CIKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKD   37 (104)
T ss_dssp             EEEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTT
T ss_pred             CEEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcc
Confidence            3689999999998999999999999999999999884

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.03  E-value=5.5e-09  Score=70.82  Aligned_cols=88  Identities=30%  Similarity=0.374  Sum_probs=69.2

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccC---CCCCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT---TDKEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~---~~~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~  175 (210)
                      +++|-|.|...  +.-+.|+|.|=++.|.|-+..   ..-...+.++|.++.|..+.+. ..+++|.|.++.        
T Consensus         5 i~eG~L~K~~r--k~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~--------   74 (104)
T cd01218           5 VGEGVLTKMCR--KKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPT--------   74 (104)
T ss_pred             EecCcEEEeec--CCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecCC--------
Confidence            57899998874  344778999999999885431   1123467899999998887664 457899988764        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  +++.++|+|++|+.+|+.+|+.
T Consensus        75 ------------kSf~v~A~s~~eK~eWl~~i~~   96 (104)
T cd01218          75 ------------KSFAVYAATETEKREWMLHINK   96 (104)
T ss_pred             ------------eEEEEEcCCHHHHHHHHHHHHH
Confidence                        7999999999999999999975

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.01  E-value=1.8e-09  Score=75.17  Aligned_cols=37  Identities=27%  Similarity=0.696  Sum_probs=31.7

Q ss_pred             CCeeeEEEe-e-CCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          7 PDKEGWLWK-Q-GGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         7 ~~~~G~L~K-~-g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      +...|||.- + .++.++|+||||||+++.|.||+.+.+
T Consensus         1 ~~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d   39 (122)
T cd01263           1 VEYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDD   39 (122)
T ss_pred             CccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCc
Confidence            467899985 3 457899999999999999999997776

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0690|consensus

Probab=98.98  E-value=7.8e-10  Score=88.20  Aligned_cols=98  Identities=29%  Similarity=0.511  Sum_probs=66.6

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEe-CCEEEEeccCCCCCceeEEEeCCeEEEE----ecCCCCcceEEEEeCCceee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTDKEPRGIIPLENIQVRE----VHDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~-~~~L~yy~~~~~~~~~~~i~L~~~~v~~----~~~~~~~~~f~i~~~~~~~~  171 (210)
                      .++.++|||+|+|...+.|+.|||+|. ++.|.-|+...........+|.+..|..    ..+..+|+.|.|.+..--- 
T Consensus        13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT-   91 (516)
T KOG0690|consen   13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT-   91 (516)
T ss_pred             hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee-
Confidence            456799999999999999999999994 6778877754332212224444433322    2244678899887653210 


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                   --+|  .|.++|.+++++|+.||+.+
T Consensus        92 -------------VIER--TF~ves~~eRq~W~~AIq~v  115 (516)
T KOG0690|consen   92 -------------VIER--TFYVESAEERQEWIEAIQAV  115 (516)
T ss_pred             -------------eeee--eeecCCHHHHHHHHHHHHHH
Confidence                         0123  46789999999999999864

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.97  E-value=1.3e-08  Score=69.78  Aligned_cols=93  Identities=20%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-----------CCceeEEEeCCeEEEEecCCC-CcceEEEEe
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-----------KEPRGIIPLENIQVREVHDRH-KPHCFELFT  165 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-----------~~~~~~i~L~~~~v~~~~~~~-~~~~f~i~~  165 (210)
                      +.+++|-|.|.....+..+.|+|.|=++.|.|.+....           -..++.++|+.+.|...++.. -++.|.|.+
T Consensus         3 elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~   82 (112)
T cd01261           3 EFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIIL   82 (112)
T ss_pred             cccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEc
Confidence            34689999998866677899999999999998875332           123456888888888776653 589999987


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .++                   +.+.|+|.|++|..+||.+|..
T Consensus        83 ~~~-------------------~s~~l~Akt~eeK~~Wm~~l~~  107 (112)
T cd01261          83 KDG-------------------NSVIFSAKNAEEKNNWMAALIS  107 (112)
T ss_pred             CCC-------------------CEEEEEECCHHHHHHHHHHHHH
Confidence            532                   6899999999999999999864

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090|consensus

Probab=98.95  E-value=2.5e-10  Score=101.07  Aligned_cols=93  Identities=30%  Similarity=0.671  Sum_probs=74.5

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEe--CCEEEEeccCCCCCceeEEEeCCeEEEE-ecC--CCCcceEEEEeCCceee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKEPRGIIPLENIQVRE-VHD--RHKPHCFELFTSGFEFI  171 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~--~~~L~yy~~~~~~~~~~~i~L~~~~v~~-~~~--~~~~~~f~i~~~~~~~~  171 (210)
                      .+-+.+|+|+|+|..+|.||.|||||.  ...|+||.+..+..|+|+|+|....... +.+  .+.+--|.+.+.     
T Consensus      1632 eNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlktt----- 1706 (1732)
T KOG1090|consen 1632 ENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTT----- 1706 (1732)
T ss_pred             cccCcccchhhcchhhcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeeehh-----
Confidence            445679999999999999999999995  4689999999999999999998753322 222  133444666554     


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     .|.|.|+|.+-...++|++.|++
T Consensus      1707 ---------------~rvynf~a~nin~AqqWve~iqs 1729 (1732)
T KOG1090|consen 1707 ---------------NRVYNFCAQNINLAQQWVECIQS 1729 (1732)
T ss_pred             ---------------hHHHHHHhccchHHHHHHHHHHH
Confidence                           47999999999999999999986

>KOG3640|consensus

Probab=98.92  E-value=1.4e-09  Score=95.96  Aligned_cols=106  Identities=24%  Similarity=0.444  Sum_probs=75.8

Q ss_pred             CCcceeeEEee--cCccCCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeEEEEecC-----CCCcceEEEEeCC
Q psy17820         98 NPDKEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHD-----RHKPHCFELFTSG  167 (210)
Q Consensus        98 ~~~~~G~L~k~--~~~~~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~~-----~~~~~~f~i~~~~  167 (210)
                      ++...|||+.-  +.+++.|.||||+|.++.+.|++.+.+   +.|.+.|+|..|+-..+++     .++++.|.|..-.
T Consensus       989 dVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~r 1068 (1116)
T KOG3640|consen  989 DVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWR 1068 (1116)
T ss_pred             ceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeec
Confidence            45568998875  356778999999999999999997765   5699999999987655443     2688999987321


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...     .+.+-.++. ..-...|+||+.++++.|+.+|++
T Consensus      1069 Pl~-----~Dqep~~ie-~r~Rv~LaADTkeel~~Wls~iN~ 1104 (1116)
T KOG3640|consen 1069 PLE-----DDQEPLLIE-KRLRVMLAADTKEELQSWLSAIND 1104 (1116)
T ss_pred             ccc-----cccCcchhh-hcceeeeecccHHHHHHHHHHHHH
Confidence            100     011111111 112678999999999999999975

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=98.89  E-value=6.6e-09  Score=72.81  Aligned_cols=37  Identities=32%  Similarity=0.818  Sum_probs=31.8

Q ss_pred             eeeEEEeeCCCC------C------------CceeEEEEEeCCEEEEEeecCCcc
Q psy17820          9 KEGWLWKQGGRY------K------------SWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         9 ~~G~L~K~g~~~------~------------~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      |+||+.|++++.      .            +|++|||||+++.|.||+++.+..
T Consensus         1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~   55 (121)
T cd01254           1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQ   55 (121)
T ss_pred             CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCc
Confidence            689999998841      2            699999999999999999998843

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.81  E-value=1.4e-08  Score=66.46  Aligned_cols=40  Identities=23%  Similarity=0.458  Sum_probs=33.6

Q ss_pred             CCeeeEEEeeCCC--CCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          7 PDKEGWLWKQGGR--YKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         7 ~~~~G~L~K~g~~--~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      +++.|||.-...+  .++=|+|||||++++|+||++..|+++
T Consensus         1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~   42 (110)
T cd01256           1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK   42 (110)
T ss_pred             CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc
Confidence            4678999887663  345799999999999999999999876

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=98.68  E-value=2.8e-08  Score=85.67  Aligned_cols=90  Identities=26%  Similarity=0.455  Sum_probs=71.9

Q ss_pred             CcceeeEEeecC-----ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEE-EecCC--CCcceEEEEeCCcee
Q psy17820         99 PDKEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVR-EVHDR--HKPHCFELFTSGFEF  170 (210)
Q Consensus        99 ~~~~G~L~k~~~-----~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~-~~~~~--~~~~~f~i~~~~~~~  170 (210)
                      +.+.|.|.++..     +.+.+|+|||.|.+..|.|-|++. ..|.+.|+|.++..+ .+++.  +.+++|+|+.++   
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~-~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d---  640 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG-KQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD---  640 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEeccceeEEecCCc-cCcccceeHHHHHHHHHhhhhccCCCceEEEEecC---
Confidence            345666776542     235899999999999999999884 578999999987543 34443  788999998874   


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                       |+.|++|.+-.|..+|+++|.+
T Consensus       641 -----------------rtly~Q~~n~vEandWldaL~k  662 (800)
T KOG2059|consen  641 -----------------RTLYVQAKNCVEANDWLDALRK  662 (800)
T ss_pred             -----------------cceeEecCCchHHHHHHHHHHH
Confidence                             6999999999999999999975

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=98.62  E-value=2e-07  Score=63.50  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=27.9

Q ss_pred             eeeEEEee-C----C---CCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          9 KEGWLWKQ-G----G---RYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         9 ~~G~L~K~-g----~---~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      ++|+|..+ .    +   ..+.|++|||||+++.|+||++++.
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~   43 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKM   43 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcc
Confidence            37888832 2    1   4679999999999999999998754

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3751|consensus

Probab=98.61  E-value=1.4e-07  Score=79.03  Aligned_cols=97  Identities=24%  Similarity=0.426  Sum_probs=69.4

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEE---EeCCeEEEEec--C----CCCcceEEEEeCC
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGII---PLENIQVREVH--D----RHKPHCFELFTSG  167 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i---~L~~~~v~~~~--~----~~~~~~f~i~~~~  167 (210)
                      ..|.++|+|+.+..+.|+|||.||+|+...|||+......+|+..-   ++.+..|-...  .    ....++|.|....
T Consensus       315 ~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~  394 (622)
T KOG3751|consen  315 SPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNK  394 (622)
T ss_pred             CCccccceeeecccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeecc
Confidence            4578899999999889999999999999999999877666665443   33333333221  1    1346788876654


Q ss_pred             ceeeeeeecCCCCceeeecceE-EEEEcCCHHHHHHHHHHHh
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTV-YRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~-~~l~a~s~~e~~~Wi~al~  208 (210)
                      .+               ...|. -+|+||++..+..|+.||+
T Consensus       395 ~~---------------~~~r~lk~lCAEDe~t~~~WltAiR  421 (622)
T KOG3751|consen  395 LR---------------NKRRFLKMLCAEDEQTRTCWLTAIR  421 (622)
T ss_pred             cc---------------CcccceeeeecccchhHHHHHHHHH
Confidence            21               01133 3799999999999999997

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=98.59  E-value=1.4e-07  Score=63.46  Aligned_cols=26  Identities=27%  Similarity=0.719  Sum_probs=23.1

Q ss_pred             CCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820         19 RYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus        19 ~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      ..++||||||+|+|+.|+||+++.+.
T Consensus        16 ~~K~~KrrwF~lk~~~L~YyK~kee~   41 (106)
T cd01237          16 TLKGYKQYWFTFRDTSISYYKSKEDS   41 (106)
T ss_pred             hhhhheeEEEEEeCCEEEEEccchhc
Confidence            46789999999999999999988763

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=98.57  E-value=3.4e-07  Score=62.08  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeec
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT   41 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~   41 (210)
                      -+++|||.|.++..+.|+.|||.|.++.|.|++..
T Consensus         2 ~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~   36 (101)
T cd01219           2 LLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPR   36 (101)
T ss_pred             cccceEEEEEecCCCCceeEEEEEeCCEEEEEEcc
Confidence            47899999999999999999999999999999954

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.55  E-value=1e-06  Score=59.65  Aligned_cols=85  Identities=22%  Similarity=0.380  Sum_probs=60.1

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCC-EEEEeccCCCCCceeEEEeCC-eEEEEecCCCCcceEEEEeCCceeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDK-CLYYFEYTTDKEPRGIIPLEN-IQVREVHDRHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~-~L~yy~~~~~~~~~~~i~L~~-~~v~~~~~~~~~~~f~i~~~~~~~~~~~  174 (210)
                      ...+++|.+.|+.+..  .++|+++|+++ .|+|+.... ...+|.|++.. .++...    ....|.|.+++       
T Consensus        11 e~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~-~~~KGeI~~~~~l~v~~k----~~~~F~I~tp~-------   76 (104)
T PF14593_consen   11 ELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKK-MVLKGEIPWSKELSVEVK----SFKTFFIHTPK-------   76 (104)
T ss_dssp             --EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTT-TEEEEEE--STT-EEEEC----SSSEEEEEETT-------
T ss_pred             CeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCC-CeECcEEecCCceEEEEc----cCCEEEEECCC-------
Confidence            3457899999998765  79999999988 887777664 46789999985 344442    22378888774       


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   |+|+|.. .+.+...|+++|+.
T Consensus        77 -------------RtY~l~d-~~~~A~~W~~~I~~   97 (104)
T PF14593_consen   77 -------------RTYYLED-PEGNAQQWVEAIEE   97 (104)
T ss_dssp             -------------EEEEEE--TTS-HHHHHHHHHH
T ss_pred             -------------cEEEEEC-CCCCHHHHHHHHHH
Confidence                         8999875 56668889999974

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.51  E-value=7.5e-08  Score=63.68  Aligned_cols=27  Identities=33%  Similarity=0.773  Sum_probs=24.2

Q ss_pred             CCeeeEEEeeCC-CCCCceeEEEEEeCC
Q psy17820          7 PDKEGWLWKQGG-RYKSWKRRWFILNDK   33 (210)
Q Consensus         7 ~~~~G~L~K~g~-~~~~wkrRwfvL~~~   33 (210)
                      ..++|||+|+|+ ..+.||||||||.+-
T Consensus         2 mk~sGyL~k~Gg~~~KkWKKRwFvL~qv   29 (117)
T cd01234           2 MKHCGYLYAIGKNVWKKWKKRFFVLVQV   29 (117)
T ss_pred             CceeEEEEeccchhhhhhheeEEEEEch
Confidence            458999999999 899999999999853

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0521|consensus

Probab=98.49  E-value=8.4e-08  Score=86.02  Aligned_cols=91  Identities=30%  Similarity=0.551  Sum_probs=75.7

Q ss_pred             CcceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeeec
Q psy17820         99 PDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus        99 ~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      ....|+|+++.. ..+.|+||||..+++.+.|...-.+.......+|..|+|..+++. .+.+||+|+++.         
T Consensus       274 ~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~iiS~t---------  344 (785)
T KOG0521|consen  274 YRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEIISPT---------  344 (785)
T ss_pred             hhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEecCC---------
Confidence            345788887764 477999999999999998887765544466788889999887765 789999999864         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                 ++|.|+|+|+.+.++||.+|+.
T Consensus       345 -----------ks~~lQAes~~d~~~Wi~~i~n  366 (785)
T KOG0521|consen  345 -----------KSYLLQAESEKDCQDWISALQN  366 (785)
T ss_pred             -----------cceEEecCchhHHHHHHHHHHH
Confidence                       6999999999999999999974

>smart00233 PH Pleckstrin homology domain

Probab=98.49  E-value=1.2e-06  Score=58.03  Aligned_cols=37  Identities=43%  Similarity=0.949  Sum_probs=33.4

Q ss_pred             CCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          7 PDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         7 ~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      +.++|||.+++. ....|++|||+|.++.|.||++..+
T Consensus         1 ~~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~   38 (102)
T smart00233        1 VIKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA   38 (102)
T ss_pred             CceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc
Confidence            368999999998 7889999999999999999998765

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>KOG0932|consensus

Probab=98.47  E-value=1.4e-08  Score=85.58  Aligned_cols=166  Identities=19%  Similarity=0.287  Sum_probs=103.5

Q ss_pred             CCceeEEEEEeCCEEEEEeecCCcc---ccc-------ccCCcceecccceeEEEechh-----------HHHHHHhhhc
Q psy17820         21 KSWKRRWFILNDKCLYYFEYTTDKS---ACL-------IENSSGRYKSWKRRWFILNDK-----------CLYYFEYTTD   79 (210)
Q Consensus        21 ~~wkrRwfvL~~~~L~Yy~~~~~~~---~~~-------i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~   79 (210)
                      ..|-+|||-..-+.+    +..|..   +|-       ++..+|...++-+.||....+           +.++|.+|+.
T Consensus       379 ~hFS~Ry~~CNP~~~----~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKn  454 (774)
T KOG0932|consen  379 RHFSRRYFQCNPDIF----DSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKN  454 (774)
T ss_pred             HHHHHHhhccCcccc----ccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhh
Confidence            456778777765554    222222   221       577888889998888866442           8899999977


Q ss_pred             CCcccc----------------CC------------CCCCcccccc----CCcceeeEEeec----------CccCCeeE
Q psy17820         80 KPFKIP----------------ED------------DGNDLMHTFF----NPDKEGWLWKQG----------GRYKSWKR  117 (210)
Q Consensus        80 ~~~~~~----------------~~------------~~~~~~~~~~----~~~~~G~L~k~~----------~~~~~wk~  117 (210)
                      ..+...                ..            ....+..+..    ..-+.|+|..+-          .+..+||.
T Consensus       455 eklewAideee~~ks~se~a~~~~~~~~~~~s~~g~~~~pfldv~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~  534 (774)
T KOG0932|consen  455 EKLEWAIDEEELAKSLSELADPSVNGHPKSTSRIGSGSNPFLDVPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKM  534 (774)
T ss_pred             hhhhhccChhhhccChHhhcCCcccCCccccccccCCCCccccCCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHH
Confidence            644320                00            0001111111    123689987651          13458999


Q ss_pred             EEEEEeCCEEEEeccCCC-CCceeEEEeCCe------EEEEe-cCCCCcceEEEEeCCceeeeeeecCCCCceeeecceE
Q psy17820        118 RWFILNDKCLYYFEYTTD-KEPRGIIPLENI------QVREV-HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV  189 (210)
Q Consensus       118 r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~------~v~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~  189 (210)
                      -|.+|+|-.||+-+++-. ...+..-+|.+.      -.... +-.+++++|.|.+.+.                   |.
T Consensus       535 fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY~KKp~Vf~lrtAdw-------------------rv  595 (774)
T KOG0932|consen  535 FYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDYSKKPHVFKLRTADW-------------------RV  595 (774)
T ss_pred             HHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCcccccCCceEEEEeccc-------------------ee
Confidence            999999999988775432 112222233331      11122 2247899999988864                   89


Q ss_pred             EEEEcCCHHHHHHHHHHHhc
Q psy17820        190 YRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       190 ~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |.|+|.|.+||+.||..|+-
T Consensus       596 ~LFQaps~eEmqsWi~rIN~  615 (774)
T KOG0932|consen  596 FLFQAPSQEEMQSWIERINL  615 (774)
T ss_pred             EEEeCCCHHHHHHHHHHHHH
Confidence            99999999999999998864

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=98.44  E-value=1.1e-05  Score=54.81  Aligned_cols=91  Identities=18%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC----CCceeEEEeCCeEEEEecCCC-------CcceEEEEeCCc
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD----KEPRGIIPLENIQVREVHDRH-------KPHCFELFTSGF  168 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~----~~~~~~i~L~~~~v~~~~~~~-------~~~~f~i~~~~~  168 (210)
                      +++|-|.+.+...+.-+.|.+.|=++.|.|.|...-    -.-++.|+|..+.|..+++..       -.+.|.|+..+.
T Consensus         3 i~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~   82 (109)
T cd01224           3 FLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSEST   82 (109)
T ss_pred             eEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCC
Confidence            568888877642223368899999999999885322    346788999999998876651       267888887753


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                        +..|.|+|.|+++...|++||.
T Consensus        83 ------------------~~~~~f~~Kt~e~K~~Wm~a~~  104 (109)
T cd01224          83 ------------------DEWYLFSFKSAERKHRWLSAFA  104 (109)
T ss_pred             ------------------CeEEEEEECCHHHHHHHHHHHH
Confidence                              3589999999999999999985

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.37  E-value=1.3e-06  Score=58.92  Aligned_cols=37  Identities=38%  Similarity=0.700  Sum_probs=33.6

Q ss_pred             eeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         9 ~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      .+|+|+-+..+.++||||||+|+...|+|+...+-++
T Consensus         2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~   38 (114)
T cd01259           2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKN   38 (114)
T ss_pred             ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCC
Confidence            5899999999999999999999999999998776665

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.36  E-value=1.8e-06  Score=74.47  Aligned_cols=94  Identities=22%  Similarity=0.361  Sum_probs=62.8

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC-C--CCceeEEEeCCe-EEEEe---cCCCCcceEEEEeCCce
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT-D--KEPRGIIPLENI-QVREV---HDRHKPHCFELFTSGFE  169 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~-~--~~~~~~i~L~~~-~v~~~---~~~~~~~~f~i~~~~~~  169 (210)
                      .+....||+.+.+... .|++|||.+.++.+......+ +  ......+.+... .+.++   ....++++|.|.+..+ 
T Consensus       375 sDv~~~G~l~k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~-  452 (478)
T PTZ00267        375 SDVTHGGYLYKYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNG-  452 (478)
T ss_pred             CCcccceEEeccCCCc-chhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCC-
Confidence            4567899999988655 499999999887777543211 1  121222333221 22223   2345689999866543 


Q ss_pred             eeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        170 FIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                        +.++|.|+|++++++|+.+|+.+
T Consensus       453 ------------------~~~~~~~~~~~~~~~W~~~~~~~  475 (478)
T PTZ00267        453 ------------------QKIIAYAKTAEDRDQWISKFQRA  475 (478)
T ss_pred             ------------------cEEEEecCChHHHHHHHHHHHHH
Confidence                              57888999999999999999864

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.31  E-value=5.4e-06  Score=56.27  Aligned_cols=90  Identities=18%  Similarity=0.373  Sum_probs=63.4

Q ss_pred             eeeEEeecC----ccCCeeEEEEEEeCCEEEEeccCCC-----CCceeEEEeC--CeEEEE---ec--CCCCcceEEEEe
Q psy17820        102 EGWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTD-----KEPRGIIPLE--NIQVRE---VH--DRHKPHCFELFT  165 (210)
Q Consensus       102 ~G~L~k~~~----~~~~wk~r~fvL~~~~L~yy~~~~~-----~~~~~~i~L~--~~~v~~---~~--~~~~~~~f~i~~  165 (210)
                      -|||..+-.    ..+.|+.+|++|++..|+.|+...-     ..|....+|-  -+.+..   ..  ..++++||.+.+
T Consensus         2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt   81 (108)
T cd01258           2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT   81 (108)
T ss_pred             ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence            488877632    3469999999999999999997643     3344444443  122211   11  125678999876


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...  |                .+++|+.|+..|+..|..||++
T Consensus        82 g~~--v----------------esh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          82 GTQ--V----------------ENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCc--e----------------eeEEEEecCHHHHHHHHHHHhc
Confidence            642  1                5899999999999999999975

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=98.29  E-value=6.3e-07  Score=59.88  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=66.6

Q ss_pred             CCcceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec--CCCCcceEEEEeCCceeeeee
Q psy17820         98 NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--DRHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        98 ~~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~--~~~~~~~f~i~~~~~~~~~~~  174 (210)
                      +.+..||+.|.|+ ....|++|||-|-.+.|-++....+ .....|.+..+.-+..+  ..+..+|..|...++      
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~-~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~------   74 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEA-NKPELITMDQIEDVSVEFQQIKEENCILLKIRDE------   74 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccc-cCCcEEEeehhhhcchhheeeccCceEEEEEcCC------
Confidence            4567999999986 4569999999999999998654433 33445555543221211  125678888887654      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   +.++|.++++-+..+|...|+.
T Consensus        75 -------------~k~vlt~~d~i~l~qW~~elr~   96 (116)
T cd01240          75 -------------KKIVLTNSDEIELKQWKKELRD   96 (116)
T ss_pred             -------------ceEEEecCCcHHHHHHHHHHHH
Confidence                         6899999999999999988864

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=98.24  E-value=5.7e-06  Score=57.39  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             eeeEEEeeC-----C-----CCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          9 KEGWLWKQG-----G-----RYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         9 ~~G~L~K~g-----~-----~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      |+|+|..+-     +     +.+.|+++||||+++.|+.|+++..
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~   46 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHK   46 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcc
Confidence            688988752     1     2579999999999999999999864

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090|consensus

Probab=98.20  E-value=1.2e-06  Score=78.52  Aligned_cols=50  Identities=34%  Similarity=0.656  Sum_probs=41.7

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEe--CCEEEEEeecCCcc-cccccCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKS-ACLIENSSG   54 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~--~~~L~Yy~~~~~~~-~~~i~~~~~   54 (210)
                      .|...+|||+|+|...|.|+.|||||.  ..+|+||++..|.. .+.|+.+++
T Consensus      1632 eNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaev 1684 (1732)
T KOG1090|consen 1632 ENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEV 1684 (1732)
T ss_pred             cccCcccchhhcchhhcccccceeEecCCccceeeecccccccccchhhhhhh
Confidence            466779999999999999999999996  56999999877665 467776665

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.19  E-value=3.9e-05  Score=51.33  Aligned_cols=89  Identities=25%  Similarity=0.341  Sum_probs=63.0

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecC
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTD  177 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~  177 (210)
                      -+++|.|...+.+    +.|+..|=+..|.+.+...+ -.-+..|.+.+..+.+..+ +.+++|.|.+.+.         
T Consensus         4 Llleg~l~~~~~~----~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~-~d~~~F~v~~~~~---------   69 (97)
T cd01222           4 LLLEGRFREHGGG----KPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLP-GEPLCFRVIPFDD---------   69 (97)
T ss_pred             eeeeceEEeecCC----CceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCC-CCCcEEEEEecCC---------
Confidence            4567777644432    45888887777777665433 3345667888777766444 3489999976642         


Q ss_pred             CCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       178 ~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                              +.+.+.|+|.|.++.+.|+.+|+.
T Consensus        70 --------p~~~~~l~A~s~e~K~~W~~~i~~   93 (97)
T cd01222          70 --------PKGALQLTARNREEKRIWTQQLKR   93 (97)
T ss_pred             --------CceEEEEEecCHHHHHHHHHHHHH
Confidence                    236899999999999999999975

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=98.18  E-value=8.9e-06  Score=71.44  Aligned_cols=95  Identities=18%  Similarity=0.309  Sum_probs=67.2

Q ss_pred             CCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCC-eEEEEecCC----CCcceEEEEeCC
Q psy17820         98 NPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLEN-IQVREVHDR----HKPHCFELFTSG  167 (210)
Q Consensus        98 ~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~-~~v~~~~~~----~~~~~f~i~~~~  167 (210)
                      .+.++|||+..|.   +..-..+|||||.+..|.|||....  ..|.....+.+ +.|+.....    .--+.|.|+...
T Consensus         3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~   82 (719)
T PLN00188          3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   82 (719)
T ss_pred             cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCC
Confidence            3468999999874   2346799999999999999997543  34555555554 455543221    223566666553


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .                 ..+...|.|.+.+|...|+.||+.
T Consensus        83 ~-----------------~~~~~~~~a~~~eea~~W~~a~~~  107 (719)
T PLN00188         83 E-----------------KYHRITMAAFNIQEALIWKEKIES  107 (719)
T ss_pred             C-----------------ccccEEEecCCHHHHHHHHHHHHH
Confidence            2                 347899999999999999999975

>cd00900 PH-like Pleckstrin homology-like domain

Probab=98.11  E-value=2.5e-05  Score=51.38  Aligned_cols=39  Identities=44%  Similarity=0.779  Sum_probs=33.7

Q ss_pred             eeeEEEeeCCCC----CCceeEEEEEeCCEEEEEeecCCcccc
Q psy17820          9 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSAC   47 (210)
Q Consensus         9 ~~G~L~K~g~~~----~~wkrRwfvL~~~~L~Yy~~~~~~~~~   47 (210)
                      .+|||.+++...    ..|++|||+|.++.|.||+.+.+....
T Consensus         1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~   43 (99)
T cd00900           1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIK   43 (99)
T ss_pred             CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCC
Confidence            479999999864    799999999999999999988776543

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=98.08  E-value=1.4e-05  Score=52.20  Aligned_cols=35  Identities=46%  Similarity=1.033  Sum_probs=31.3

Q ss_pred             eeeEEEeeCCCC-CCceeEEEEEeCCEEEEEeecCC
Q psy17820          9 KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         9 ~~G~L~K~g~~~-~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      ++|||.+++... ..|++|||+|.++.|.+|+...+
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~   36 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSS   36 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCC
Confidence            479999998765 89999999999999999998765

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=98.03  E-value=0.00014  Score=49.27  Aligned_cols=77  Identities=18%  Similarity=0.328  Sum_probs=60.1

Q ss_pred             CeeEEEEEEeCCEEEEeccCC---CCCceeEEEeCCeEEEEecC-CCCcceEEEEeCCceeeeeeecCCCCceeeecceE
Q psy17820        114 SWKRRWFILNDKCLYYFEYTT---DKEPRGIIPLENIQVREVHD-RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV  189 (210)
Q Consensus       114 ~wk~r~fvL~~~~L~yy~~~~---~~~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~  189 (210)
                      .-..||++|-...|.+.+...   .-.-.|.++|.+.+|...++ .+.++.|+|.-+.-                   ..
T Consensus        27 e~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li-------------------~~   87 (111)
T cd01225          27 EKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLI-------------------ER   87 (111)
T ss_pred             ccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCc-------------------Cc
Confidence            447899999999998877533   23457889999999887554 36689999975532                   36


Q ss_pred             EEEEcCCHHHHHHHHHHHhc
Q psy17820        190 YRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       190 ~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.+.|.+++|+.+|+..|++
T Consensus        88 i~v~C~~~~e~~~Wl~hL~~  107 (111)
T cd01225          88 IVVVCNNPQDAQEWVELLNA  107 (111)
T ss_pred             EEEEeCCHHHHHHHHHHHHh
Confidence            77889999999999999975

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=97.97  E-value=5.5e-05  Score=50.95  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      +++|+|.|.++ .+.|+|+||.++|-.|++.....++
T Consensus         3 ikEG~L~K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~   38 (99)
T cd01220           3 IRQGCLLKLSK-KGLQQRMFFLFSDLLLYTSKSPTDQ   38 (99)
T ss_pred             eeEEEEEEEeC-CCCceEEEEEccceEEEEEeecCCC
Confidence            68999999987 3466655555555444444444433

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3531|consensus

Probab=97.96  E-value=2.2e-06  Score=75.46  Aligned_cols=90  Identities=21%  Similarity=0.488  Sum_probs=74.0

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeeeeec
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      ..+|+|..+-....+|+|-|.|..+-+|++||+-+|..|..+++|-|+++....+   ..+.+.|.|....         
T Consensus       925 qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~---------  995 (1036)
T KOG3531|consen  925 QLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKS---------  995 (1036)
T ss_pred             hhhHHHHHHhhccccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhh---------
Confidence            3468887665555699999999999999999999999999999999988765332   2456777776553         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                 -.|+|+|++.-..+.|++.|+.
T Consensus       996 -----------hvyffraes~yt~~rw~evi~~ 1017 (1036)
T KOG3531|consen  996 -----------HVYFFRAESYYTFERWMEVITD 1017 (1036)
T ss_pred             -----------hHHHHhhhhhhhhhhHHHHhhc
Confidence                       3899999999999999999985

>KOG1451|consensus

Probab=97.93  E-value=4.4e-05  Score=65.27  Aligned_cols=124  Identities=15%  Similarity=0.244  Sum_probs=83.2

Q ss_pred             ccceeEEEechhHHHHHHhhhcCCccccCCCCCCccccccCCcceeeEEeec--CccCCeeEEEEEEeCC--EEEEec--
Q psy17820         58 SWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQG--GRYKSWKRRWFILNDK--CLYYFE--  131 (210)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~--~~~~~wk~r~fvL~~~--~L~yy~--  131 (210)
                      .+++-|-..+.+++.+...+..++..-.         ....++++|||+.+.  ...++|-+.||+....  .+..-.  
T Consensus       233 nTrn~f~~Tr~E~EeLkKkmke~p~e~k---------~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~  303 (812)
T KOG1451|consen  233 NTRNNFNATRAEAEELKKKMKESPTEDK---------RPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPAN  303 (812)
T ss_pred             HhhhcccchHHHHHHHHHHHhhCccccc---------CCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecc
Confidence            3555666666667777777766654221         113467999999875  3456999999999644  222211  


Q ss_pred             cCC--CCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        132 YTT--DKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       132 ~~~--~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      ...  +..+...+.|..|+-...+.-++.+||.|-....                  .-++.++|-|++++..||+|+-
T Consensus       304 qk~g~k~g~~~~~~lKsC~RRktdSIdKRFCFDve~~er------------------pgviTmQALSE~drrlWmeAMD  364 (812)
T KOG1451|consen  304 QKTGTKMGQTATFKLKSCSRRKTDSIDKRFCFDVEVEER------------------PGVITMQALSEKDRRLWMEAMD  364 (812)
T ss_pred             cCCCCcCCCcceEEehhhccCcccccccceeeeeeeccc------------------CCeeehHhhhhhHHHHHHHHhc
Confidence            111  1224455777777766666667889999876542                  2488999999999999999973

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.93  E-value=0.00023  Score=49.64  Aligned_cols=81  Identities=15%  Similarity=0.263  Sum_probs=50.4

Q ss_pred             CeeEEEEEEeCCEEEEeccCCCCC--ceeEEEeCCeEEEEecCC-----------CCcceEEEEeCCceeeeeeecCCCC
Q psy17820        114 SWKRRWFILNDKCLYYFEYTTDKE--PRGIIPLENIQVREVHDR-----------HKPHCFELFTSGFEFIKACKTDSEG  180 (210)
Q Consensus       114 ~wk~r~fvL~~~~L~yy~~~~~~~--~~~~i~L~~~~v~~~~~~-----------~~~~~f~i~~~~~~~~~~~~~~~~~  180 (210)
                      +-+.+|+.|=++.|.|-+...+..  .....+...+.|..++..           ..++.|.|.....            
T Consensus        26 ~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N------------   93 (125)
T cd01221          26 KARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRN------------   93 (125)
T ss_pred             cCCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeecc------------
Confidence            446789999999888876543211  111122334444443321           3467777753321            


Q ss_pred             ceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        181 KVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       181 ~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                        -.+..+.+.|+|+|+.|+..||.||.
T Consensus        94 --~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          94 --ADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             --CCCCEEEEEEECCCHHHHHHHHHhcC
Confidence              01234789999999999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=97.88  E-value=8.5e-05  Score=50.29  Aligned_cols=45  Identities=27%  Similarity=0.257  Sum_probs=35.0

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCC-EEEEEeecCCcccccccC
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDK-CLYYFEYTTDKSACLIEN   51 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~-~L~Yy~~~~~~~~~~i~~   51 (210)
                      +.+.++|+|.|+.|..  .|+|+|+|+++ .|.|++..+....+.|..
T Consensus        11 e~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~~KGeI~~   56 (104)
T PF14593_consen   11 ELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKKMVLKGEIPW   56 (104)
T ss_dssp             --EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTTTEEEEEE--
T ss_pred             CeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCCCeECcEEec
Confidence            3478999999999866  79999999988 999999887765555543

>KOG0690|consensus

Probab=97.84  E-value=1.1e-05  Score=64.98  Aligned_cols=50  Identities=30%  Similarity=0.517  Sum_probs=36.8

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEe-CCEEEEEee-cCCccc--ccccCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEY-TTDKSA--CLIENSSG   54 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~-~~~L~Yy~~-~~~~~~--~~i~~~~~   54 (210)
                      ..++++|||.|+|.-.++|+-|||+|. ||.|.=|++ +++..+  ..+.+-.|
T Consensus        13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v   66 (516)
T KOG0690|consen   13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMV   66 (516)
T ss_pred             hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhh
Confidence            357899999999999999999999994 777777764 444432  34444444

>PLN02866 phospholipase D

Probab=97.84  E-value=0.00019  Score=65.81  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=67.8

Q ss_pred             ccccCCcceeeEEeec-----C------c---------cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec
Q psy17820         94 HTFFNPDKEGWLWKQG-----G------R---------YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH  153 (210)
Q Consensus        94 ~~~~~~~~~G~L~k~~-----~------~---------~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~  153 (210)
                      +....-.++|++.|+.     +      .         ...|.+||++|+++.|.|.+++.+..++.++.+.-.-     
T Consensus       177 ~~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~-----  251 (1068)
T PLN02866        177 PEYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLP-----  251 (1068)
T ss_pred             hhcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCceeEEEEEeccc-----
Confidence            3344556899999881     1      0         2369999999999999999888887777776554210     


Q ss_pred             CCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       154 ~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .....-.+++.....  ++.-..-.++..+...+|++.|.|.|...+..|+.+|+.
T Consensus       252 ~~~~~~~~~~~~~~~--~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~  305 (1068)
T PLN02866        252 ASNGNGEGQISLAKE--IKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAIND  305 (1068)
T ss_pred             ccccCCCcceeeccc--ccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHH
Confidence            000000111110000  011111223444455568999999999999999999974

>KOG1117|consensus

Probab=97.84  E-value=5e-05  Score=67.50  Aligned_cols=90  Identities=27%  Similarity=0.523  Sum_probs=71.0

Q ss_pred             eeeEEeecCc----------cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec--CC----CCcceEEEEe
Q psy17820        102 EGWLWKQGGR----------YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--DR----HKPHCFELFT  165 (210)
Q Consensus       102 ~G~L~k~~~~----------~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~--~~----~~~~~f~i~~  165 (210)
                      .|+|++....          .....++||||-|+.|+||.++....|.+.|.+..+....+.  +.    +-.|.|+++.
T Consensus       495 ~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l  574 (1186)
T KOG1117|consen  495 CGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYL  574 (1186)
T ss_pred             cceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEEEee
Confidence            4999876321          124678999999999999999999999999999875443332  21    3457889888


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      ++.                   |.+.|-+++.++...|..|+-+|
T Consensus       575 ~~e-------------------r~~~fgle~ad~l~~wt~aiaKh  600 (1186)
T KOG1117|consen  575 PGE-------------------RVFLFGLETADALRKWTEAIAKH  600 (1186)
T ss_pred             ccc-------------------ceEEeecccHHHHHHHHHHHHHh
Confidence            764                   89999999999999999998664

>KOG0248|consensus

Probab=97.79  E-value=1e-05  Score=70.14  Aligned_cols=89  Identities=21%  Similarity=0.433  Sum_probs=66.2

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ...++||+.+.+...+.|+|||++++.+.+.||+.+.+  ..|.+.+++....+..  ..+....|+++...        
T Consensus       248 ~~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~--~~~~s~~fqli~~t--------  317 (936)
T KOG0248|consen  248 TMEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLE--QQGAAYAFQLITST--------  317 (936)
T ss_pred             hhhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceee--ccchhHHhhhhhhc--------
Confidence            34678999999988899999999999999999997765  5677878776533322  23345667776553        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                  ..++|.++|+.-..+|+..|+
T Consensus       318 ------------~~~~~~~~s~~lt~dw~~iL~  338 (936)
T KOG0248|consen  318 ------------DKMNFMTESERTTHDWVTILS  338 (936)
T ss_pred             ------------eeEEEeccChhhhhhhHHHHH
Confidence                        477788888877777777665

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.79  E-value=0.00012  Score=48.06  Aligned_cols=82  Identities=17%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccC-------CCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT-------TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIK  172 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~-------~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~  172 (210)
                      ..+|+|.+...+..  |.|-|.|-++.|.|-+-.       +.-...-.|+|++..+...+       |.+...      
T Consensus         4 v~eg~lvel~~~~r--K~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-------~~~~~~------   68 (96)
T cd01228           4 VKDSFLVELVEGSR--KLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-------FRIHNK------   68 (96)
T ss_pred             cccceeeeehhCCC--cceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-------hhcccc------
Confidence            57899998764333  667777777777655421       12234567899887775542       333322      


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   +.++|.+.|.|..|+.+|+.+|+.
T Consensus        69 -------------~~KSf~~~asS~~Er~eW~~hI~~   92 (96)
T cd01228          69 -------------NGKSYTFLLSSDYERSEWRESIQK   92 (96)
T ss_pred             -------------CCceEEEEecCHHHHHHHHHHHHH
Confidence                         237999999999999999999964

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=97.79  E-value=0.00055  Score=45.82  Aligned_cols=89  Identities=19%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             ceeeEEeecC-ccCCeeEEEEEEeCCEEEEecc--CCCCCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeeec
Q psy17820        101 KEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEY--TTDKEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus       101 ~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~--~~~~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      .+|-|..-+. ..+.=++..+.|=++.|.|-.-  ...-.....++|.+..|..+++. .-+++|.|.++.         
T Consensus         4 ~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~---------   74 (100)
T cd01226           4 LYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFP---------   74 (100)
T ss_pred             EcCcEEEechhhCCccceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCC---------
Confidence            4555555543 2333355646666666665432  22233566789999988887765 457899998775         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                 +++.++|+|.++..+|++.|..
T Consensus        75 -----------~s~i~qaes~~~K~eWl~~le~   96 (100)
T cd01226          75 -----------ESRIYQCESARIKTEWFEELEQ   96 (100)
T ss_pred             -----------ccEEEEeCCHHHHHHHHHHHHH
Confidence                       4888999999999999999975

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3751|consensus

Probab=97.76  E-value=5.9e-05  Score=63.66  Aligned_cols=42  Identities=33%  Similarity=0.657  Sum_probs=38.6

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      +.+.++|||+-++.+.|.|||-||||+...|+|+...+.+.+
T Consensus       315 ~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~  356 (622)
T KOG3751|consen  315 SPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEP  356 (622)
T ss_pred             CCccccceeeecccccccceeEEEEEecCcceEccCCCCCCc
Confidence            678999999999999999999999999999999998877664

>KOG1739|consensus

Probab=97.73  E-value=4e-05  Score=64.04  Aligned_cols=89  Identities=20%  Similarity=0.413  Sum_probs=67.2

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC--CceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeec
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK--EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~--~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      ....|+|.|.......|+-||++|+.+.|.||+++.+.  -.+|.|.|....+..-+.  ....|.|....         
T Consensus        24 ~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEf--De~rfdIsvn~---------   92 (611)
T KOG1739|consen   24 VERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEF--DECRFDISVND---------   92 (611)
T ss_pred             hhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccc--hhheeeeEecc---------
Confidence            34678888777777799999999999999999987543  378889888755443222  23356665553         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                 ...++.+.+.+.++.|+++|..
T Consensus        93 -----------nv~~lra~~~~hr~~w~d~L~w  114 (611)
T KOG1739|consen   93 -----------NVWYLRAQDPDHRQQWIDALEW  114 (611)
T ss_pred             -----------ceeeehhcCcHHHHHHHHHHHH
Confidence                       4889999999999999999863

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=97.72  E-value=0.0012  Score=46.23  Aligned_cols=97  Identities=15%  Similarity=0.328  Sum_probs=54.7

Q ss_pred             ceeeEEeecCcc-----CCeeEEEEEEeC--CEEEEeccCCC-CC----ceeEEEeCCeEEEEecCCCCcceEEEEeCCc
Q psy17820        101 KEGWLWKQGGRY-----KSWKRRWFILND--KCLYYFEYTTD-KE----PRGIIPLENIQVREVHDRHKPHCFELFTSGF  168 (210)
Q Consensus       101 ~~G~L~k~~~~~-----~~wk~r~fvL~~--~~L~yy~~~~~-~~----~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~  168 (210)
                      .-.||+|-.+..     ..-.+|||-|..  ..|++...... ..    ....+.|..+..+..... .+...  ..+. 
T Consensus        11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~-~~~~~--~~~~-   86 (123)
T PF12814_consen   11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNP-SPPGL--KKPD-   86 (123)
T ss_pred             cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCC-CCccc--cccc-
Confidence            456788866433     477899999975  56666654321 11    123456655433221111 11000  0000 


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                              ...++++.++.|++.|.|++.++.+-|+.+|+-
T Consensus        87 --------~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~  119 (123)
T PF12814_consen   87 --------HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRY  119 (123)
T ss_pred             --------cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHH
Confidence                    001123445569999999999999999999973

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>KOG3723|consensus

Probab=97.65  E-value=1.5e-05  Score=67.81  Aligned_cols=92  Identities=32%  Similarity=0.564  Sum_probs=65.7

Q ss_pred             cCCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCCC-CceeEEEeCCeEEEE-ec----CCCCcceEEEEeCC
Q psy17820         97 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDK-EPRGIIPLENIQVRE-VH----DRHKPHCFELFTSG  167 (210)
Q Consensus        97 ~~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~~-~~~~~i~L~~~~v~~-~~----~~~~~~~f~i~~~~  167 (210)
                      +.|..+|-|..+.|   ..+.|+.|||.|.+..|.|-+..... .-...|+|..++-+. +.    +..-+..|+|.+.+
T Consensus       733 gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD  812 (851)
T KOG3723|consen  733 GQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD  812 (851)
T ss_pred             CCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC
Confidence            55677888875543   56799999999999999986643322 222457777543222 22    12345689999886


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                          .++.|.|.++...++|+.+|+
T Consensus       813 --------------------~T~ILKaKDeKNAEEWlqCL~  833 (851)
T KOG3723|consen  813 --------------------KTYILKAKDEKNAEEWLQCLN  833 (851)
T ss_pred             --------------------ceEEeecccccCHHHHHHHHH
Confidence                                489999999999999999986

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.60  E-value=0.00069  Score=46.50  Aligned_cols=92  Identities=20%  Similarity=0.224  Sum_probs=62.1

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC------CceeEEEeCCeEEEEec--CC-----CCcceEEEEe
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------EPRGIIPLENIQVREVH--DR-----HKPHCFELFT  165 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~------~~~~~i~L~~~~v~~~~--~~-----~~~~~f~i~~  165 (210)
                      +...|.|..+......=+.||..|-+..+...+...+.      .-+..+.|..+.|...+  +.     .-.++|.|..
T Consensus         4 ~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~   83 (116)
T cd01223           4 PLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAH   83 (116)
T ss_pred             cccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEe
Confidence            45667777665432334688888888888877754332      23455666666666543  22     2357888887


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      .++                  ...+.|.|.|+++...|+.||.
T Consensus        84 ~~~------------------~~~~~f~~Ktee~K~kWm~al~  108 (116)
T cd01223          84 KQG------------------KTGFTFYFKTEHLRKKWLKALE  108 (116)
T ss_pred             cCC------------------CccEEEEeCCHHHHHHHHHHHH
Confidence            653                  2479999999999999999985

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=97.59  E-value=0.0009  Score=43.63  Aligned_cols=84  Identities=25%  Similarity=0.374  Sum_probs=57.6

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCC-EEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCC
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDK-CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDS  178 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~-~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~  178 (210)
                      .+.|.+.|+.+.  .+++|=++|.+. .|.|+. +.....+|.|++....+....  .....|.|.++            
T Consensus         2 l~~g~v~Kr~gl--f~kkR~LiLTd~PrL~yvd-p~~~~~KgeIp~s~~~l~v~~--~~~~~F~I~Tp------------   64 (89)
T cd01262           2 LKIGAVKKRKGL--FAKKRQLILTNGPRLIYVD-PVKKVVKGEIPWSDVELRVEV--KNSSHFFVHTP------------   64 (89)
T ss_pred             ceeeeeeehhcc--ccceeeEEEecCceEEEEc-CCcCeEEeEecccccceEEEE--ecCccEEEECC------------
Confidence            357888887764  559999999876 555554 445677899999872222111  12246777666            


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                              +|+|+|. |.+.....|+.+|..
T Consensus        65 --------~rty~le-D~~~~a~~W~~~I~~   86 (89)
T cd01262          65 --------NKVYSFE-DPKGRASQWKKAIED   86 (89)
T ss_pred             --------CceEEEE-CCCCCHHHHHHHHHH
Confidence                    4799994 667889999999964

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4424|consensus

Probab=97.55  E-value=0.00017  Score=61.67  Aligned_cols=100  Identities=25%  Similarity=0.360  Sum_probs=71.9

Q ss_pred             CCccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC-----CCCceeEEEeCCeEEEEecCCCCcceEEEE
Q psy17820         90 NDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT-----DKEPRGIIPLENIQVREVHDRHKPHCFELF  164 (210)
Q Consensus        90 ~~~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~-----~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~  164 (210)
                      .+++......+++|-|.|.......-..||++|-++.+.|.+..-     ..++...+.+.++.+........++.|.+.
T Consensus       263 ~dIV~PsreLiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~  342 (623)
T KOG4424|consen  263 EDIVSPSRELIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNEELPHTFILT  342 (623)
T ss_pred             ccccCcHHHHhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccccCCceEEEe
Confidence            345555566789999999987777889999999888877765321     122334455555555444444556777765


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+                    .|.+.|.|.|+++..+|+.+|+.
T Consensus       343 G~--------------------~r~vel~a~t~~ek~eWv~~I~~  367 (623)
T KOG4424|consen  343 GK--------------------KRGVELQARTEQEKKEWVQAIQD  367 (623)
T ss_pred             cc--------------------cceEEeecCchhhHHHHHHHHHH
Confidence            43                    48999999999999999999974

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=97.52  E-value=0.00018  Score=49.00  Aligned_cols=39  Identities=18%  Similarity=0.381  Sum_probs=34.8

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      .++||+.--...-+.|||+|++|+...|.+|.+++....
T Consensus         1 lkEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~sky   39 (117)
T cd01239           1 LKEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRY   39 (117)
T ss_pred             CccceEEEEecCccceeeeEEEecCCeEEEEEcCCCCee
Confidence            479999999888899999999999999999999876553

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3543|consensus

Probab=97.48  E-value=2.3e-05  Score=67.56  Aligned_cols=92  Identities=22%  Similarity=0.488  Sum_probs=64.5

Q ss_pred             CCcceeeEEeecC-ccCCeeEEEEEEeCCEEEEec----cCCCCCceeEEEeCCeEEEEecCC----CCcceEEEEeCCc
Q psy17820         98 NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFE----YTTDKEPRGIIPLENIQVREVHDR----HKPHCFELFTSGF  168 (210)
Q Consensus        98 ~~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~----~~~~~~~~~~i~L~~~~v~~~~~~----~~~~~f~i~~~~~  168 (210)
                      +...+|||+-.|. ..+.||+|||+|..-.-|.|.    .+....|...|.|.|++|.-.++.    ++.+-|.-+..  
T Consensus       463 nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnavke--  540 (1218)
T KOG3543|consen  463 NMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKE--  540 (1218)
T ss_pred             ccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHhcc--
Confidence            3456899998885 456999999999654333222    233467888999999999876554    23333332222  


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                        ..++.|+.+++.|+.-|+.|+-+
T Consensus       541 ------------------gdtvifasddeqdr~lwvqamyr  563 (1218)
T KOG3543|consen  541 ------------------GDTVIFASDDEQDRHLWVQAMYR  563 (1218)
T ss_pred             ------------------CceEEeccCchhhhhHHHHHHHH
Confidence                              25889999999999999999843

>PF15406 PH_6: Pleckstrin homology domain

Probab=97.42  E-value=0.00068  Score=45.58  Aligned_cols=64  Identities=27%  Similarity=0.443  Sum_probs=42.7

Q ss_pred             eCCEEEEec-cCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHH
Q psy17820        123 NDKCLYYFE-YTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD  201 (210)
Q Consensus       123 ~~~~L~yy~-~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~  201 (210)
                      .|..|.+|. .++...|.|+|+|.+++- +..  ++.+-|.+...+                    ....|.|.|..|++
T Consensus        47 TGKGLLF~~K~~dka~P~GiinLadase-~~~--~g~~kF~f~~~G--------------------~khtF~A~s~aERD  103 (112)
T PF15406_consen   47 TGKGLLFFSKAEDKASPSGIINLADASE-PEK--DGSNKFHFKIKG--------------------HKHTFEAASAAERD  103 (112)
T ss_pred             cCceEEEEeccccccCCcceEehhhccc-ccc--CCCceEEEEeCC--------------------ceeeeecCCHHHhc
Confidence            344455554 444568999999987532 122  233445554443                    48899999999999


Q ss_pred             HHHHHHhc
Q psy17820        202 EWIKCLSL  209 (210)
Q Consensus       202 ~Wi~al~~  209 (210)
                      .|+.+|..
T Consensus       104 ~Wv~~lk~  111 (112)
T PF15406_consen  104 NWVAQLKA  111 (112)
T ss_pred             cHHHHhhc
Confidence            99999863

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.41  E-value=0.00074  Score=58.64  Aligned_cols=92  Identities=24%  Similarity=0.360  Sum_probs=55.4

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCc-----------------eeEE--EeCCe-EEEEecCC---
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP-----------------RGII--PLENI-QVREVHDR---  155 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~-----------------~~~i--~L~~~-~v~~~~~~---  155 (210)
                      ...+|.+.+.++.. .||+||+.+.+..+--.....+..|                 ..+|  ++... .+.+++..   
T Consensus       373 ~~~~g~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (496)
T PTZ00283        373 TLYEGIVKKQSSDL-SWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKYTG  451 (496)
T ss_pred             eeeeeEEecccCCc-ccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHhhC
Confidence            45678887766544 5999999886421111110001111                 0122  22221 22333332   


Q ss_pred             -CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        156 -HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       156 -~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                       ..++.|.+...++                   +.+.|.|.++++++.||.+||++
T Consensus       452 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~  488 (496)
T PTZ00283        452 SNAAHVFAVAFKTG-------------------RRLLFQARSDPERDAWMQKIQSV  488 (496)
T ss_pred             CCCCcEEEEEecCC-------------------cEEEEecCCchhHHHHHHHHHHh
Confidence             3578888887764                   89999999999999999999863

>PF15408 PH_7: Pleckstrin homology domain

Probab=97.37  E-value=0.00011  Score=46.98  Aligned_cols=86  Identities=20%  Similarity=0.342  Sum_probs=54.3

Q ss_pred             eeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEE--ecC-CCCc----c--eEEEEeCCceeee
Q psy17820        102 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE--VHD-RHKP----H--CFELFTSGFEFIK  172 (210)
Q Consensus       102 ~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~--~~~-~~~~----~--~f~i~~~~~~~~~  172 (210)
                      +|||+....  ..-+|||.+|++..+.+|.+... ..+..+.|+...+..  ++- ...+    .  .|-.+.+++    
T Consensus         1 EGYLY~~E~--~si~rRF~~L~~K~~~~~~~KGG-~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~----   73 (104)
T PF15408_consen    1 EGYLYRDED--SSIQRRFVMLRSKQFNMYEDKGG-QYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSR----   73 (104)
T ss_pred             CCeEEEecc--chHHHHHHhhhhceeEEecccCC-ceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCc----
Confidence            588887642  23478999999999998887643 345666666432211  110 1111    2  333333332    


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     +.+.+-|+|.+.++.||++|++
T Consensus        74 ---------------~~~~~FA~S~~~~~~Wi~~mN~   95 (104)
T PF15408_consen   74 ---------------RHVQCFASSKKVCQSWIQVMNS   95 (104)
T ss_pred             ---------------chhhhhhhHHHHHHHHHHHhcC
Confidence                           5677889999999999999974

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=97.31  E-value=5.5e-05  Score=50.71  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=35.8

Q ss_pred             CCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccccc
Q psy17820          6 NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSACL   48 (210)
Q Consensus         6 ~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~   48 (210)
                      +++.+||+.|.|| ....|++|||.|-.+.|-+|....++.+.+
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~eL   45 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKPEL   45 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCCcE
Confidence            5678999999999 678999999999999999987655555443

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=97.28  E-value=0.00054  Score=47.09  Aligned_cols=38  Identities=26%  Similarity=0.543  Sum_probs=31.3

Q ss_pred             CeeeEEEee--CCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          8 DKEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         8 ~~~G~L~K~--g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ..+|||.-.  ++..++|+|+|+||.+..|+.|..+.++.
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~   42 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRA   42 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCcccc
Confidence            579999643  44567999999999999999999887654

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15404 PH_4: Pleckstrin homology domain

Probab=97.26  E-value=0.0079  Score=45.01  Aligned_cols=34  Identities=18%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             eeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecC
Q psy17820          9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         9 ~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      ++|.|+.+.+....|+++++||..|.|.-|....
T Consensus         1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~   34 (185)
T PF15404_consen    1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFK   34 (185)
T ss_pred             CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEe
Confidence            5899999999999999999999999999998653

>KOG0705|consensus

Probab=97.26  E-value=5.5e-05  Score=64.54  Aligned_cols=38  Identities=34%  Similarity=0.577  Sum_probs=32.8

Q ss_pred             CCCeeeEEEeeCC--CCCCceeEEEEEe-CCEEEEEeecCC
Q psy17820          6 NPDKEGWLWKQGG--RYKSWKRRWFILN-DKCLYYFEYTTD   43 (210)
Q Consensus         6 ~~~~~G~L~K~g~--~~~~wkrRwfvL~-~~~L~Yy~~~~~   43 (210)
                      -++|+|.|.|+++  .++.||+.|+.|. ++.|.||.+-.|
T Consensus       301 IPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~d  341 (749)
T KOG0705|consen  301 IPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGD  341 (749)
T ss_pred             cchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHH
Confidence            4789999999998  3499999999995 789999997765

>KOG4424|consensus

Probab=97.23  E-value=0.00042  Score=59.36  Aligned_cols=77  Identities=19%  Similarity=0.343  Sum_probs=57.4

Q ss_pred             cCCeeEEEEEE---eCCEEEEeccCCCCCceeEEEeCCeEEEEecCC---CCcceEEEEeCCceeeeeeecCCCCceeee
Q psy17820        112 YKSWKRRWFIL---NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR---HKPHCFELFTSGFEFIKACKTDSEGKVVEG  185 (210)
Q Consensus       112 ~~~wk~r~fvL---~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~---~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~  185 (210)
                      .+.|..-|+++   .+..++.|..+++......|+|.++.+...+..   +..+.|.++.                    
T Consensus       510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~--------------------  569 (623)
T KOG4424|consen  510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQ--------------------  569 (623)
T ss_pred             CccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhhh--------------------
Confidence            46899999988   355788888888888889999999877643333   2233333332                    


Q ss_pred             cceEEEEEcCCHHHHHHHHHHHh
Q psy17820        186 KHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       186 ~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      .+..++|.|++++-.+.|++.|-
T Consensus       570 s~~~~~~~a~~~q~qq~wl~~l~  592 (623)
T KOG4424|consen  570 SHLSWHLAADDEQLQQRWLEVLL  592 (623)
T ss_pred             hcceeeeccCCHHHHHHHHHHHH
Confidence            24689999999999999998774

>KOG2059|consensus

Probab=96.94  E-value=0.001  Score=58.33  Aligned_cols=74  Identities=19%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CCeeeEEEeeCCC-----CCCceeEEEEEeCCEEEEEeecCCcccccccCCcce------------------ecccceeE
Q psy17820          7 PDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGR------------------YKSWKRRW   63 (210)
Q Consensus         7 ~~~~G~L~K~g~~-----~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i~~~~~~------------------~~~~~~~~   63 (210)
                      +.++|.|.|+..+     .++||+|||.|++..|+|-|+......+.|...+|.                  -..++..|
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly  644 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLY  644 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEeccceeEEecCCccCcccceeHHHHHHHHHhhhhccCCCceEEEEecCccee
Confidence            3445555555432     468899999999999999999988776555554441                  11234567


Q ss_pred             EEechh--HHHHHHhhhcC
Q psy17820         64 FILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~   80 (210)
                      ++++..  ...|.+++...
T Consensus       645 ~Q~~n~vEandWldaL~kv  663 (800)
T KOG2059|consen  645 VQAKNCVEANDWLDALRKV  663 (800)
T ss_pred             EecCCchHHHHHHHHHHHH
Confidence            777654  77888888654

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=96.84  E-value=0.0072  Score=42.10  Aligned_cols=34  Identities=32%  Similarity=0.687  Sum_probs=25.2

Q ss_pred             eeeEEEeeC-----C-----CCCCceeEEEEEeCCEEEEEeecC
Q psy17820          9 KEGWLWKQG-----G-----RYKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         9 ~~G~L~K~g-----~-----~~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      |+|||..+-     +     ..+.|+.-|+||+++.|..|+++.
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~   45 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEK   45 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHH
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCc
Confidence            789998841     1     467899999999999999999853

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=96.74  E-value=0.0039  Score=42.25  Aligned_cols=37  Identities=22%  Similarity=0.652  Sum_probs=30.0

Q ss_pred             eeeEEEeeCC--C--CCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          9 KEGWLWKQGG--R--YKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         9 ~~G~L~K~g~--~--~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      .+|||.-...  .  .++|+|+|+||.+..|..|.++.++.
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~   42 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKE   42 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCcccc
Confidence            6899965443  2  35999999999999999999887764

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=96.73  E-value=0.013  Score=38.98  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             cCCeeEEEEEEe----CCEEEEecc--CCCCCceeEEEeCC------eEEEEecCCCCcceEEEEeCCceeeeeeecCCC
Q psy17820        112 YKSWKRRWFILN----DKCLYYFEY--TTDKEPRGIIPLEN------IQVREVHDRHKPHCFELFTSGFEFIKACKTDSE  179 (210)
Q Consensus       112 ~~~wk~r~fvL~----~~~L~yy~~--~~~~~~~~~i~L~~------~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~  179 (210)
                      ...|.+.-.+|.    |..|.+|..  +....|+-.+....      ++..+.+  ++.++|.|.-.++           
T Consensus        18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmP--D~~nTFvLK~~~~-----------   84 (107)
T cd01231          18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMP--DNLYTFVLKVDDN-----------   84 (107)
T ss_pred             ccccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhccccccc--CcccEEEEEecCC-----------
Confidence            357888777774    234444444  55556665554432      2222223  4567787765442           


Q ss_pred             CceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        180 GKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       180 ~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                              -.|.|.|.+++++++|+..|+-
T Consensus        85 --------~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          85 --------TDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             --------ceEEEEcCCHHHHHHHHHHHhc
Confidence                    5899999999999999999973

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=96.69  E-value=0.062  Score=37.09  Aligned_cols=78  Identities=17%  Similarity=0.333  Sum_probs=48.6

Q ss_pred             eEEEEEEeCCEEEEeccCCC----CCc----eeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeecc
Q psy17820        116 KRRWFILNDKCLYYFEYTTD----KEP----RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH  187 (210)
Q Consensus       116 k~r~fvL~~~~L~yy~~~~~----~~~----~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~  187 (210)
                      +.|-+.|-...|.+-+...+    ..|    +..|.+..+.+.+..+ +.+..|+|...+..               .+.
T Consensus        25 ~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~-gd~~kF~i~~~~~~---------------~~~   88 (114)
T cd01232          25 RERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVE-GDPCRFALWSGDPP---------------ISD   88 (114)
T ss_pred             ceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccC-CCCceEEEEeCCCC---------------CCc
Confidence            44555555555555543221    122    3556777766655433 34567888665431               013


Q ss_pred             eEEEEEcCCHHHHHHHHHHHhc
Q psy17820        188 TVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       188 r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+|.++|.|.++.+.|+..|++
T Consensus        89 ~~~ilqA~s~e~K~~W~~~I~~  110 (114)
T cd01232          89 NRIILKANSQETKQEWVKKIRE  110 (114)
T ss_pred             eEEEEECCCHHHHHHHHHHHHH
Confidence            6899999999999999999985

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=96.42  E-value=0.0063  Score=54.06  Aligned_cols=37  Identities=24%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             CCCCeeeEEEeeCC---CCCCceeEEEEEeCCEEEEEeec
Q psy17820          5 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYT   41 (210)
Q Consensus         5 ~~~~~~G~L~K~g~---~~~~wkrRwfvL~~~~L~Yy~~~   41 (210)
                      ..+.++|||+.-|.   +..-.++|||||++..|.|||..
T Consensus         2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~   41 (719)
T PLN00188          2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKK   41 (719)
T ss_pred             CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccC
Confidence            35779999999988   34557999999999999999964

>PLN02866 phospholipase D

Probab=96.40  E-value=0.016  Score=53.75  Aligned_cols=43  Identities=21%  Similarity=0.388  Sum_probs=34.2

Q ss_pred             CCCCCCeeeEEEee-----CC-C--------------CCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          3 TFFNPDKEGWLWKQ-----GG-R--------------YKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         3 ~~~~~~~~G~L~K~-----g~-~--------------~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      .|-+-.+|||+.|+     ++ .              ..+|+||||||+++.|.|.++..+..
T Consensus       178 ~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~  240 (1068)
T PLN02866        178 EYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAK  240 (1068)
T ss_pred             hcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCc
Confidence            45677899999999     22 1              24799999999999999998776654

>KOG1739|consensus

Probab=96.37  E-value=0.0031  Score=53.12  Aligned_cols=40  Identities=20%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      +..+|+|.|.-.-...|+-|||||+++.|+||+++.++..
T Consensus        24 ~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~h   63 (611)
T KOG1739|consen   24 VERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEH   63 (611)
T ss_pred             hhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhc
Confidence            3467888888777789999999999999999999987653

>KOG3640|consensus

Probab=96.05  E-value=0.0027  Score=57.37  Aligned_cols=41  Identities=22%  Similarity=0.620  Sum_probs=34.5

Q ss_pred             CCCCeeeEEEee--CCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~--g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ..+...|||.--  +.+++.|.||||+|.++++.|++.+.|..
T Consensus       988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk 1030 (1116)
T KOG3640|consen  988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK 1030 (1116)
T ss_pred             cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc
Confidence            467788999875  44789999999999999999999776643

>KOG3551|consensus

Probab=95.96  E-value=0.0033  Score=51.62  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=79.3

Q ss_pred             HHHHHHhhhcCCccccCCCCCCcccc---ccCCcceeeEEeec--CccCCeeEEEEEEeCCEEEEeccCCC-----CCce
Q psy17820         70 CLYYFEYTTDKPFKIPEDDGNDLMHT---FFNPDKEGWLWKQG--GRYKSWKRRWFILNDKCLYYFEYTTD-----KEPR  139 (210)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~G~L~k~~--~~~~~wk~r~fvL~~~~L~yy~~~~~-----~~~~  139 (210)
                      ...|+.+|.+..-.+.+.--+++...   ..+..+-|||.++-  ++.+.|+..+.+|....|.+|.+-.-     ..|.
T Consensus       260 A~~Wf~AiHa~v~~ll~rvlaE~n~~Lg~t~evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~  339 (506)
T KOG3551|consen  260 ADSWFEAIHANVNTLLTRVLAEVNAMLGNTSEVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPR  339 (506)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChh
Confidence            78999998765433322111111111   12455689998874  45668999999999999998886432     4567


Q ss_pred             eEEEeCCeEEEEecCC------CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        140 GIIPLENIQVREVHDR------HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       140 ~~i~L~~~~v~~~~~~------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      ...+|-..+++-..+.      +..-.|...+-..+.|                .++.|++|+..|+-.|...|-
T Consensus       340 ~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV----------------~thlfrvEThrdLa~WtRslV  398 (506)
T KOG3551|consen  340 HTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGV----------------ETHLFRVETHRELAAWTRSLV  398 (506)
T ss_pred             hhhhhhhhhheecCCCCCCCcCCceEEEEEecccccce----------------EEEEEEeccHHHHHHHHHHHH
Confidence            7777765444432222      1223566655543332                699999999999999998773

>KOG4236|consensus

Probab=95.74  E-value=0.016  Score=50.07  Aligned_cols=90  Identities=24%  Similarity=0.472  Sum_probs=63.4

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCe-EEEEe------cCCCCcceEEEEeCCceee
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREV------HDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~-~v~~~------~~~~~~~~f~i~~~~~~~~  171 (210)
                      ..++||+..-...-..=||.|-.|....+..|.+.....-...|+|..+ +|+..      ++...++||+|.+..    
T Consensus       413 ~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~----  488 (888)
T KOG4236|consen  413 KLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT----  488 (888)
T ss_pred             hhhcceEEEEechhhhhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee----
Confidence            4578998765432222367788899999999999888777788999864 33332      344678999998763    


Q ss_pred             eeeecCCCCceeeecceEEEEEcCC------------HHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAAT------------AEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s------------~~e~~~Wi~al~~  209 (210)
                                       ..||..++            .+..+.|-.||++
T Consensus       489 -----------------~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~  521 (888)
T KOG4236|consen  489 -----------------TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQ  521 (888)
T ss_pred             -----------------EEEEecCCCCCCccccccccchhhccCchhhhh
Confidence                             55555665            4457889888875

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=95.47  E-value=0.19  Score=35.60  Aligned_cols=75  Identities=20%  Similarity=0.423  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCEEEEeccCCC-----CCc----eeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeec
Q psy17820        116 KRRWFILNDKCLYYFEYTTD-----KEP----RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGK  186 (210)
Q Consensus       116 k~r~fvL~~~~L~yy~~~~~-----~~~----~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~  186 (210)
                      +.|...|-...+.+.+...+     ..|    +..|.+....+.+.. .+.+..|+|-..+.                  
T Consensus        30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v-~gd~~kFeiw~~~~------------------   90 (133)
T cd01227          30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENV-KGDTKKFEIWYNAR------------------   90 (133)
T ss_pred             ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccC-CCCccEEEEEeCCC------------------
Confidence            45666666665555553321     122    333445444333321 23466788876543                  


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        187 HTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       187 ~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...|.|+|.|.+..+.|+..|++
T Consensus        91 ~~~yilqA~t~e~K~~Wv~~I~~  113 (133)
T cd01227          91 EEVYILQAPTPEIKAAWVNEIRK  113 (133)
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHH
Confidence            35899999999999999999975

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1737|consensus

Probab=95.17  E-value=0.015  Score=52.48  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      ...+|||.|.....++|++|||+|.++.|+||.+....
T Consensus        77 ~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~  114 (799)
T KOG1737|consen   77 ASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFS  114 (799)
T ss_pred             ccccceeeccccccCCcccceEEecCcceeeeccCCcc
Confidence            35679999999999999999999999999999877653

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=95.03  E-value=0.16  Score=34.46  Aligned_cols=30  Identities=37%  Similarity=0.273  Sum_probs=25.9

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEe
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFE   39 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~   39 (210)
                      +++|-|.|..  .+.-+.|+|.|-++.|.|-+
T Consensus         5 i~eG~L~K~~--rk~~~~R~ffLFnD~LvY~~   34 (104)
T cd01218           5 VGEGVLTKMC--RKKPKQRQFFLFNDILVYGN   34 (104)
T ss_pred             EecCcEEEee--cCCCceEEEEEecCEEEEEE
Confidence            5799999999  56668899999999999954

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1737|consensus

Probab=95.02  E-value=0.015  Score=52.57  Aligned_cols=87  Identities=20%  Similarity=0.306  Sum_probs=59.1

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeec
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      .-.+|||.|.....++|.+|||+|.++.|.||.+...  ..+.+.+.+....+...+.      +.+....+        
T Consensus        77 ~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~------~~~~~~~~--------  142 (799)
T KOG1737|consen   77 ASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGER------MDICSVDG--------  142 (799)
T ss_pred             ccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCC------cccchhhc--------
Confidence            3468999999988899999999999999999987654  4466667665443322111      11111110        


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                               +...+++.+.+..+...|+.+++
T Consensus       143 ---------~~q~~~~~~~~~~~~~~~~~~~~  165 (799)
T KOG1737|consen  143 ---------SCQIYLVELSKKLQRQGWLHALE  165 (799)
T ss_pred             ---------ccchhhhhhhHHHhhcchhhhhh
Confidence                     12467788888899999998876

>PF15411 PH_10: Pleckstrin homology domain

Probab=94.81  E-value=0.87  Score=31.52  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             CCeeEEEEEEeCCEEEEeccCCCC-------------------CceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeee
Q psy17820        113 KSWKRRWFILNDKCLYYFEYTTDK-------------------EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus       113 ~~wk~r~fvL~~~~L~yy~~~~~~-------------------~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~  173 (210)
                      ..|+...+-|=...|.+++.....                   ..+|.|.+.+++-....+..+.+.+.|.-.+..    
T Consensus        19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~----   94 (116)
T PF15411_consen   19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDP----   94 (116)
T ss_pred             CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCC----
Confidence            568888888888888777743211                   124555555432222223345677777763221    


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHH
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL  207 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al  207 (210)
                                  ....|.|...+++.++.|-.+|
T Consensus        95 ------------e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   95 ------------ELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             ------------CCceEEEEeCCHHHHHHHHhhC
Confidence                        1258999999999999999886

>KOG3549|consensus

Probab=94.52  E-value=0.02  Score=46.60  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=72.9

Q ss_pred             HHHHHHhhhcCCccccCCCCCC---ccccccCCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCCCCc-----
Q psy17820         70 CLYYFEYTTDKPFKIPEDDGND---LMHTFFNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDKEP-----  138 (210)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~~~~-----  138 (210)
                      ...|..+|......+......-   --++......-||....-.   ....++.+|..|+|..++.|..+.-...     
T Consensus       249 ~~dWL~ait~Ni~~LT~~nmK~~Nrnf~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rA  328 (505)
T KOG3549|consen  249 LSDWLKAITDNIVGLTHLNMKLYNRNFAVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRA  328 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhh
Confidence            6788888766543332111000   0112234556799876532   2336789999999999999987743211     


Q ss_pred             eeEEEeCC--eEEEE-e-cCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        139 RGIIPLEN--IQVRE-V-HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       139 ~~~i~L~~--~~v~~-~-~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .....+-.  +.|.. . ....+++||.|...++                   ...||..+.+.|+-.|-.+++.
T Consensus       329 e~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~g-------------------e~~yfsVEl~seLa~wE~sfq~  384 (505)
T KOG3549|consen  329 EVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSGG-------------------EPRYFSVELRSELARWENSFQA  384 (505)
T ss_pred             hhhHHHHHHHHHHhccccccccccceEEEEcCCC-------------------CceEEEEehhhHHHHHHHHHhh
Confidence            00000000  11111 1 1236889999987654                   6899999999999999988774

>KOG1738|consensus

Probab=94.18  E-value=0.0055  Score=53.24  Aligned_cols=57  Identities=21%  Similarity=0.524  Sum_probs=46.9

Q ss_pred             CCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC
Q psy17820         98 NPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD  154 (210)
Q Consensus        98 ~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~  154 (210)
                      .-+++|||++++.   ....|++.||+|.+..|+.|.+++...+.++|.|...+|....+
T Consensus       561 ~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e  620 (638)
T KOG1738|consen  561 RGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEE  620 (638)
T ss_pred             cchhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHH
Confidence            3456889887653   23489999999999999999999999999999999888766544

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=94.09  E-value=0.8  Score=31.47  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             eEEEEEcCCHHHHHHHHHHHhc
Q psy17820        188 TVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       188 r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.+.|.|+|.++.+.|+..|+.
T Consensus        93 k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          93 KSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             eEEEEEECCHHHHHHHHHHHhh
Confidence            6899999999999999999975

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=94.08  E-value=0.37  Score=32.57  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=19.7

Q ss_pred             eeeEEEeeCC--CCCCceeEEEEEeCC
Q psy17820          9 KEGWLWKQGG--RYKSWKRRWFILNDK   33 (210)
Q Consensus         9 ~~G~L~K~g~--~~~~wkrRwfvL~~~   33 (210)
                      ++|||+.+.+  ....|-|.||....+
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~   27 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKE   27 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcC
Confidence            6899999976  334899999998653

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15404 PH_4: Pleckstrin homology domain

Probab=93.84  E-value=0.13  Score=38.59  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=37.3

Q ss_pred             ceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-----------CCceeEEEeCCeEE
Q psy17820        101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-----------KEPRGIIPLENIQV  149 (210)
Q Consensus       101 ~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-----------~~~~~~i~L~~~~v  149 (210)
                      ++|.|+.+.+.-..|+++++||..+.|..|+....           ..-...|+|.+|-|
T Consensus         1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYv   60 (185)
T PF15404_consen    1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYV   60 (185)
T ss_pred             CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceE
Confidence            47999999988889999999999999999885211           11235678876654

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=93.62  E-value=0.66  Score=33.02  Aligned_cols=110  Identities=22%  Similarity=0.271  Sum_probs=41.1

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC------CCceeEEEeCCeEEEEecCCCCcceE------EEEe--
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD------KEPRGIIPLENIQVREVHDRHKPHCF------ELFT--  165 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~------~~~~~~i~L~~~~v~~~~~~~~~~~f------~i~~--  165 (210)
                      ++.|-|.+++.....|..-.+.|=++.|..-+....      ..-...|+|+-..++..++.......      .+..  
T Consensus         2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~~~   81 (135)
T PF15405_consen    2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLISSS   81 (135)
T ss_dssp             ---------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S------
T ss_pred             ccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccCCc
Confidence            357888888876667888888888888877664321      11234577766555543322100000      0000  


Q ss_pred             CCc-eee-eeeecCCCC---cee--ee-cceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGF-EFI-KACKTDSEG---KVV--EG-KHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~-~~~-~~~~~~~~~---~~~--~~-~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ... ... .....+...   +.+  .| ....|.|.|+|..++++|+++|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~  133 (135)
T PF15405_consen   82 SSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEE  133 (135)
T ss_dssp             -SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHH
T ss_pred             cCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHh
Confidence            000 000 000000000   001  11 224689999999999999999964

>PF15408 PH_7: Pleckstrin homology domain

Probab=93.54  E-value=0.037  Score=35.62  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             eeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820         10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus        10 ~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      +|||+...  ...-+|||.+|++..|.+|.+.....
T Consensus         1 EGYLY~~E--~~si~rRF~~L~~K~~~~~~~KGG~~   34 (104)
T PF15408_consen    1 EGYLYRDE--DSSIQRRFVMLRSKQFNMYEDKGGQY   34 (104)
T ss_pred             CCeEEEec--cchHHHHHHhhhhceeEEecccCCce
Confidence            68998876  44668999999999999999887654

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=93.18  E-value=0.22  Score=34.20  Aligned_cols=39  Identities=21%  Similarity=0.090  Sum_probs=34.2

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      |+-+++|=|.|-+...+..+.|+|-|-|+.|.|.+....
T Consensus         2 ~elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~   40 (112)
T cd01261           2 NEFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHG   40 (112)
T ss_pred             ccccccCcEEEEecccCCcceEEEEEecCeEEEEEeccC
Confidence            456889999999987888999999999999999996554

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=93.16  E-value=0.71  Score=30.23  Aligned_cols=41  Identities=27%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCC-EEEEEeecCCcccccc
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDK-CLYYFEYTTDKSACLI   49 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~-~L~Yy~~~~~~~~~~i   49 (210)
                      +.+.|.+.|+.|.  .+|+|=++|++. .|.|++..+....+-|
T Consensus         1 Il~~g~v~Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~~KgeI   42 (89)
T cd01262           1 ILKIGAVKKRKGL--FAKKRQLILTNGPRLIYVDPVKKVVKGEI   42 (89)
T ss_pred             Cceeeeeeehhcc--ccceeeEEEecCceEEEEcCCcCeEEeEe
Confidence            3578999999984  459999999865 8999987766544333

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4807|consensus

Probab=92.60  E-value=0.00031  Score=57.43  Aligned_cols=77  Identities=30%  Similarity=0.557  Sum_probs=59.5

Q ss_pred             CCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeecceE
Q psy17820        113 KSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTV  189 (210)
Q Consensus       113 ~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~  189 (210)
                      ..|++.||++.+..+-||.+...   ...-+.|+|..|+-...-...+.+.|+|-+.+                    ..
T Consensus        33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~q~nY~~~i~~~~--------------------~~   92 (593)
T KOG4807|consen   33 SQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKD--------------------AV   92 (593)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHHHhccceeecccc--------------------hh
Confidence            36999999999999999987543   34567889988764332233566888887665                    37


Q ss_pred             EEEEcCCHHHHHHHHHHHhc
Q psy17820        190 YRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       190 ~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |.|.+-+...+..|+.|+++
T Consensus        93 ~tL~~~~s~Ir~~~~~A~~k  112 (593)
T KOG4807|consen   93 YTLSAMTSGIRRNWIEALRK  112 (593)
T ss_pred             hhhHHHHHHHHHHHHHHHHh
Confidence            88999999999999999974

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=92.54  E-value=1.3  Score=31.54  Aligned_cols=80  Identities=21%  Similarity=0.388  Sum_probs=50.6

Q ss_pred             EEEEEeCCEEEEeccCCCCC----------------c---eeEEEeCCeEEEEecC--CCCcceEEEEeCCceeeeeeec
Q psy17820        118 RWFILNDKCLYYFEYTTDKE----------------P---RGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus       118 r~fvL~~~~L~yy~~~~~~~----------------~---~~~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      --||.+...+..|++.....                |   +..|++...+|.....  ......++|++..++       
T Consensus        52 ~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe-------  124 (160)
T cd01255          52 MCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSE-------  124 (160)
T ss_pred             EEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeeccc-------
Confidence            35777777777777543211                1   2245565555554433  245567788766431       


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                       .+    --+++.|.|++.+.+.+..-+..|++
T Consensus       125 -~e----gRpE~vfqLCcS~~E~k~~flK~Irs  152 (160)
T cd01255         125 -LE----GRPEKVFVLCCSTAESRNAFLKTIRS  152 (160)
T ss_pred             -cc----CCCcceEEEecCCHHHHHHHHHHHHH
Confidence             01    11568999999999999999999875

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=92.53  E-value=0.17  Score=34.46  Aligned_cols=33  Identities=24%  Similarity=0.582  Sum_probs=27.4

Q ss_pred             eEEEeeCC----CCCCceeEEEEEeCCEEEEEeecCC
Q psy17820         11 GWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus        11 G~L~K~g~----~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      |||..+-.    ..++||.||++|++..|.-|++..-
T Consensus         3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~   39 (108)
T cd01258           3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPL   39 (108)
T ss_pred             eecccccCCCCccccccceEEEEEcCCcEEEEeCCCC
Confidence            89988833    3589999999999999999997643

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3523|consensus

Probab=90.03  E-value=0.64  Score=40.82  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=46.5

Q ss_pred             CeeEEEEEEeCCEEEEeccCCC-------CCceeEEEeCCeEEEEec------CCCCcceEEEEeCCceeeeeeecCCCC
Q psy17820        114 SWKRRWFILNDKCLYYFEYTTD-------KEPRGIIPLENIQVREVH------DRHKPHCFELFTSGFEFIKACKTDSEG  180 (210)
Q Consensus       114 ~wk~r~fvL~~~~L~yy~~~~~-------~~~~~~i~L~~~~v~~~~------~~~~~~~f~i~~~~~~~~~~~~~~~~~  180 (210)
                      ..+..|+.|-++.|.+-+....       ..+...+.++.+.-..-.      ..++++.|.+..-.+            
T Consensus       498 ~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N------------  565 (695)
T KOG3523|consen  498 LSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSN------------  565 (695)
T ss_pred             ccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhc------------
Confidence            4567788888888877665432       123333333322210000      113456676653321            


Q ss_pred             ceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        181 KVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       181 ~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                        -.+..-.+.|+|+|+.|++.||.||.
T Consensus       566 --~~~~~~e~lL~a~s~Sd~~RWi~Al~  591 (695)
T KOG3523|consen  566 --HQGRQTELLLSAESQSDRQRWISALR  591 (695)
T ss_pred             --cCCCceeeeecCCchHHHHHHHHhcC
Confidence              01123489999999999999999986

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=89.20  E-value=0.46  Score=41.09  Aligned_cols=34  Identities=24%  Similarity=0.527  Sum_probs=28.2

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEe
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFE   39 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~   39 (210)
                      +.+...|||.|.+...+ |++|||.+.++.+....
T Consensus       375 sDv~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~  408 (478)
T PTZ00267        375 SDVTHGGYLYKYSSDMR-WKKRYFYIGNGQLRISL  408 (478)
T ss_pred             CCcccceEEeccCCCcc-hhhheEEecCCceEEEe
Confidence            56788999999998665 99999999987766654

>KOG3727|consensus

Probab=89.16  E-value=0.043  Score=47.29  Aligned_cols=78  Identities=14%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             cCCeeEEEEEEeC----CEEEEeccCCCCCceeEEEeCCeEEEEe-cCCCCcc-eEEEEeCCceeeeeeecCCCCceeee
Q psy17820        112 YKSWKRRWFILND----KCLYYFEYTTDKEPRGIIPLENIQVREV-HDRHKPH-CFELFTSGFEFIKACKTDSEGKVVEG  185 (210)
Q Consensus       112 ~~~wk~r~fvL~~----~~L~yy~~~~~~~~~~~i~L~~~~v~~~-~~~~~~~-~f~i~~~~~~~~~~~~~~~~~~~~~~  185 (210)
                      .+..+|.||...+    ..+.||++.  ..|...|.+.+|.+.+. +....++ .|-|+....                 
T Consensus       372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~-----------------  432 (664)
T KOG3727|consen  372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAE-----------------  432 (664)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCC-----------------
Confidence            4566666665544    344454444  56888899999887653 3333332 333333321                 


Q ss_pred             cceEEEEEcCCHHHHHHHHHHHh
Q psy17820        186 KHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       186 ~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      ....++|+|+++...-.||.|.+
T Consensus       433 ~msEi~LRCd~E~QYA~WMAaCr  455 (664)
T KOG3727|consen  433 GMSEIWLRCDNEQQYARWMAACR  455 (664)
T ss_pred             ccceeEEecCCHHHHHHHHHHhh
Confidence            24689999999999999999976

>KOG1738|consensus

Probab=88.94  E-value=0.075  Score=46.48  Aligned_cols=46  Identities=26%  Similarity=0.611  Sum_probs=35.9

Q ss_pred             CCeeeEEEeeCCC---CCCceeEEEEEeCCEEEEEeecCCccc-ccccCC
Q psy17820          7 PDKEGWLWKQGGR---YKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENS   52 (210)
Q Consensus         7 ~~~~G~L~K~g~~---~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~   52 (210)
                      -.++|||++++-.   ...|++-||||+|+-|+.|.++.++.+ .+|..+
T Consensus       562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~  611 (638)
T KOG1738|consen  562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLP  611 (638)
T ss_pred             chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeecc
Confidence            3567999998773   457999999999999999998887664 344433

>KOG2070|consensus

Probab=88.45  E-value=0.75  Score=39.46  Aligned_cols=75  Identities=20%  Similarity=0.385  Sum_probs=54.3

Q ss_pred             eEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeeecCCCCceeeecceEEE
Q psy17820        116 KRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYR  191 (210)
Q Consensus       116 k~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~  191 (210)
                      +.||++|-.+.|.++.-...   .--.|.+++.|..|...++. ...+.|+|..+.-                   ..+.
T Consensus       326 ~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti-------------------~rIv  386 (661)
T KOG2070|consen  326 KDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTI-------------------ERIV  386 (661)
T ss_pred             hhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhhcccccccccccch-------------------hhee
Confidence            58999999998888875543   12346788888888776654 4456777754421                   2456


Q ss_pred             EEcCCHHHHHHHHHHHhc
Q psy17820        192 MSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       192 l~a~s~~e~~~Wi~al~~  209 (210)
                      ..|..+.+..+|+++++.
T Consensus       387 ~~c~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  387 VSCNNQQDLQEWVEHLNK  404 (661)
T ss_pred             eccCChHHHHHHHHHhhh
Confidence            778999999999999973

>KOG0521|consensus

Probab=88.09  E-value=0.17  Score=46.40  Aligned_cols=74  Identities=26%  Similarity=0.430  Sum_probs=51.2

Q ss_pred             CCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccccc---ccCCcceec--------------ccceeEEEe
Q psy17820          5 FNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSACL---IENSSGRYK--------------SWKRRWFIL   66 (210)
Q Consensus         5 ~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~---i~~~~~~~~--------------~~~~~~~~~   66 (210)
                      ......|+|.|+.+ ..+.|+||||-..++.|.|+..-.+...+.   +..+.++..              ++.....++
T Consensus       272 ~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQA  351 (785)
T KOG0521|consen  272 LGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQA  351 (785)
T ss_pred             chhhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEecCCcceEEec
Confidence            44567799999888 489999999999999999999887766332   344444322              233334556


Q ss_pred             chh--HHHHHHhhh
Q psy17820         67 NDK--CLYYFEYTT   78 (210)
Q Consensus        67 ~~~--~~~~~~~i~   78 (210)
                      +++  .++|+.++.
T Consensus       352 es~~d~~~Wi~~i~  365 (785)
T KOG0521|consen  352 ESEKDCQDWISALQ  365 (785)
T ss_pred             CchhHHHHHHHHHH
Confidence            554  667777664

>KOG3723|consensus

Probab=87.29  E-value=0.45  Score=41.53  Aligned_cols=48  Identities=33%  Similarity=0.508  Sum_probs=31.7

Q ss_pred             CCeeeEEEee-CC--CCCCceeEEEEEeCCEEEEEe--ecCCcccccccCCcc
Q psy17820          7 PDKEGWLWKQ-GG--RYKSWKRRWFILNDKCLYYFE--YTTDKSACLIENSSG   54 (210)
Q Consensus         7 ~~~~G~L~K~-g~--~~~~wkrRwfvL~~~~L~Yy~--~~~~~~~~~i~~~~~   54 (210)
                      +..+|=|.-+ |+  ..+.|+-|||.|.+..|.|-+  +.+|...+.|+...|
T Consensus       735 p~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~I  787 (851)
T KOG3723|consen  735 PLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKI  787 (851)
T ss_pred             chhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHh
Confidence            3455555433 33  368999999999999999977  334444566654433

>KOG3531|consensus

Probab=85.69  E-value=0.25  Score=44.86  Aligned_cols=40  Identities=18%  Similarity=0.659  Sum_probs=34.3

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ...+|||..+-.....|+|=|+|+++-+|++||+..|..+
T Consensus       924 ~qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~~  963 (1036)
T KOG3531|consen  924 NQLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEP  963 (1036)
T ss_pred             hhhhHHHHHHhhccccceeeeeeecceeeEeecccccccc
Confidence            3567888877777779999999999999999999988764

>KOG3543|consensus

Probab=85.51  E-value=0.18  Score=44.38  Aligned_cols=27  Identities=37%  Similarity=0.877  Sum_probs=22.7

Q ss_pred             CCCeeeEEEeeCC-CCCCceeEEEEEeC
Q psy17820          6 NPDKEGWLWKQGG-RYKSWKRRWFILND   32 (210)
Q Consensus         6 ~~~~~G~L~K~g~-~~~~wkrRwfvL~~   32 (210)
                      |--.+|||+-.|. .++.||+|||||-.
T Consensus       463 nmkhsgylyaig~nvwkrwkkrffvlvq  490 (1218)
T KOG3543|consen  463 NMKHSGYLYAIGRNVWKRWKKRFFVLVQ  490 (1218)
T ss_pred             ccccceeehhhhhHHHHHhHhhEEEEEE
Confidence            4457899999998 57999999999953

>KOG4407|consensus

Probab=85.20  E-value=0.039  Score=51.99  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             cccCCcceeeEEee------c----CccCCeeEEEEEEeCCEEEEeccCCCC--------------CceeEEEeCCeEEE
Q psy17820         95 TFFNPDKEGWLWKQ------G----GRYKSWKRRWFILNDKCLYYFEYTTDK--------------EPRGIIPLENIQVR  150 (210)
Q Consensus        95 ~~~~~~~~G~L~k~------~----~~~~~wk~r~fvL~~~~L~yy~~~~~~--------------~~~~~i~L~~~~v~  150 (210)
                      .+.+..++|||+.+      |    .....|+..|.+|.+..|+.+++....              ..-..+.+.+|-+.
T Consensus       919 ~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltd  998 (1973)
T KOG4407|consen  919 LFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTD  998 (1973)
T ss_pred             hhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhh
Confidence            34677899999754      2    235589999999999999999876431              11222444444433


Q ss_pred             E-ecCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        151 E-VHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       151 ~-~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      . ..+.++.+.|+|...+.                   -.+.|++++.++|-.|+...++
T Consensus       999 I~ysetkrn~vfRLTt~d~-------------------ce~lfqaeDrddmlgG~~ttq~ 1039 (1973)
T KOG4407|consen  999 IQYSETKRNQVFRLTTNDL-------------------CEGLFQAEDRDDMLGGLSTTQS 1039 (1973)
T ss_pred             hhhhhhhhhhHHHhHHHHH-------------------HhHhhccCccccccchhhhhhh
Confidence            3 22335667777766542                   4678999999999999987754

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=82.29  E-value=4  Score=27.88  Aligned_cols=22  Identities=14%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             eEEEEEcCCHHHHHHHHHHHhc
Q psy17820        188 TVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       188 r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..+.|.|+|..+.+.|++.|+.
T Consensus        80 G~vEfec~~~~~~k~W~~gI~~  101 (110)
T PF08458_consen   80 GVVEFECDSQREYKRWVQGIQH  101 (110)
T ss_pred             cEEEEEeCChhhHHHHHHHHHH
Confidence            5899999999999999999863

>KOG1170|consensus

Probab=80.66  E-value=0.042  Score=49.35  Aligned_cols=88  Identities=17%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             eeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCc
Q psy17820        102 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGK  181 (210)
Q Consensus       102 ~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~  181 (210)
                      .|-..+.......|+.+++.+++..-.++...........+++....+.+......++.|.++++               
T Consensus         5 rgl~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g~~~~~~d~t~a~~~eSs~~n~~~sf~vi~~---------------   69 (1099)
T KOG1170|consen    5 RGLDNDVDNEREAWKQSILRAKDRMPEKVAKTASGPLFALLDLTSAHVAESSTNNPRPSFCVITP---------------   69 (1099)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHhcccccccccccCCCCCCeeEecc---------------
Confidence            44444444444578888888877663333322121122234444555554444445566777766               


Q ss_pred             eeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        182 VVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       182 ~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                           .|...++|++..+|+.|+.+++.
T Consensus        70 -----~rk~r~~adn~ke~e~wi~~~kt   92 (1099)
T KOG1170|consen   70 -----VRKHRLCADNRKEMEKWINQSKT   92 (1099)
T ss_pred             -----cHHhhhhccchhHHHHhhccccc
Confidence                 36899999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2r0d_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		6e-54
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		9e-53
1fgy_A	127	Grp1 Ph Domain With Ins(1,3,4,5)p4 Length = 127		8e-43
1u2b_A	138	Triglycine Variant Of The Grp1 Pleckstrin Homology		3e-42
1fhw_A	129	Structure Of The Pleckstrin Homology Domain From Gr		5e-42
1fhx_A	129	Structure Of The Pleckstrin Homology Domain From Gr		2e-41
1u27_A	129	Triglycine Variant Of The Arno Pleckstrin Homology		8e-41
3tfm_A	228	Myosin X Ph1n-Ph2-Ph1c Tandem Length = 228		6e-08
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		2e-07
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		3e-07
1eaz_A	125	Crystal Structure Of The Phosphoinositol (3,4)-Bisp		1e-06
1fao_A	126	Structure Of The Pleckstrin Homology Domain From Da		2e-06
1v89_A	118	Solution Structure Of The Pleckstrin Homology Domai		3e-06
1x05_A	129	Solution Structure Of The C-Terminal Ph Domain Of H		3e-05
2i5c_A	109	Crystal Structure Of The C-Terminal Ph Domain Of Pl		3e-05
1zm0_A	114	Crystal Structure Of The Carboxyl Terminal Ph Domai		3e-05
1xx0_A	127	Structure Of The C-Terminal Ph Domain Of Human Plec		3e-05
2y7b_A	134	Crystal Structure Of The Ph Domain Of Human Actin-B		5e-05
1v5u_A	117	Solution Structure Of The C-Terminal Pleckstrin Hom		7e-05
1pls_A	113	Solution Structure Of A Pleckstrin Homology Domain		1e-04
1x1g_A	129	Solution Structure Of The C-Terminal Ph Domain Of H		2e-04
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		2e-04
2dn6_A	115	Solution Structure Of The Ph Domain Of Kiaa0640 Pro		2e-04

>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score =  206 bits (525), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
           +E   ++PFKIPEDDGNDL HTFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct: 188 YESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 247
Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYR 191
           TDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR
Sbjct: 248 TDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 307
Query: 192 MSAATAEEKDEWIKCL 207
           +SA + EEK+EW+K +
Sbjct: 308 ISAPSPEEKEEWMKSI 323

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score =  202 bits (515), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 110/136 (80%), Gaps = 2/136 (1%)
Query: 74  FEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYT 133
           +E   ++PFKIPEDDGNDL +TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYT
Sbjct: 188 YESIKNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT 247
Query: 134 TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYR 191
           TDKEPRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR
Sbjct: 248 TDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 307
Query: 192 MSAATAEEKDEWIKCL 207
           +SA + EEK+EW K +
Sbjct: 308 ISAPSPEEKEEWXKSI 323

>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4 Length = 127

Iteration: 1
 Score =  169 bits (429), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 93/115 (80%), Gaps = 2/115 (1%)
Query: 95  TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
           TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 1   TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD 60
Query: 155 RHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA + EEK+EW K +
Sbjct: 61  PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSI 115

>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain Unliganded Length = 138

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 94/116 (81%), Gaps = 3/116 (2%)
Query: 95  TFFNPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH 153
           TFFNPD+EGWL K  GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV 
Sbjct: 11  TFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVE 70
Query: 154 DRHKPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           D  KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K +
Sbjct: 71  DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 126

>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol(1,3,4,5,6)pentakisphosphate Length = 129

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 91/113 (80%), Gaps = 2/113 (1%)
Query: 97  FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
            NPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D  
Sbjct: 1   MNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPR 60
Query: 157 KPHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K +
Sbjct: 61  KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 113

>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol 1,3,4,5-Tetrakisphosphate Length = 129

Iteration: 1
 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 90/112 (80%), Gaps = 2/112 (1%)
Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
           NPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D  K
Sbjct: 2   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRK 61
Query: 158 PHCFELFTSGF--EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           P+CFEL+      + IKACKT+++G+VVEG H VYR+SA + EEK+EW K +
Sbjct: 62  PNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSI 113

>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain In Complex With Ins(1,3,4,5)p4 Length = 129

Iteration: 1
 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 91/114 (79%), Gaps = 3/114 (2%)
Query: 98  NPDKEGWLWK-QGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
           +PD+EGWL K  GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D  
Sbjct: 10  SPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPR 69
Query: 157 KPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA T EEKDEWIK + 
Sbjct: 70  KPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQ 123

>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem Length = 228

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 39/218 (17%)
Query: 11  GWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KSACLIENSSGRY----KSWKRRWF 64
            +L+  GG   SWKRRW +L D+   +F    +  K   L  N  G      ++WK+RWF
Sbjct: 25  SFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWF 84
Query: 65  ILNDKCLYYFEYTTDKPFK----------IPEDDGNDLMHTFFNPDKEGWLWKQGGRYKS 114
           +L    L YFE  +++  K          I ++   +        D+   L  +     S
Sbjct: 85  VLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIMADRTFHLIAESPEDAS 144
Query: 115 WKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA- 173
              +WF      L     +TD+E           +RE+HD        + T     I + 
Sbjct: 145 ---QWF----SVLSQVHSSTDQE-----------IREMHDEQANPQNAVGTLDVGLIDSV 186
Query: 174 CKTDSEGK----VVEGKHTVYRMSAATAEEKDEWIKCL 207
           C +DS  +    V+   + V   +A T EE   WI  L
Sbjct: 187 CASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLL 224

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 27/118 (22%)
Query: 98  NPD----KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV 152
           NP+    K GWL+KQ     K W +RWF+L D+CL+Y++   ++   G IPL + +V  V
Sbjct: 17  NPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAV 76
Query: 153 H---DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
               +  + H F+   +G                      Y  SA + EE++ WI+ +
Sbjct: 77  QPSDNISRKHTFKAEHAGVR-------------------TYFFSAESPEEQEAWIQAM 115

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 101 KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH---DRH 156
           K GWL+KQ     K W +RWF+L D+CL+Y++   ++   G IPL + +V  V    +  
Sbjct: 13  KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNIS 72
Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           + H F+   +G                      Y  SA + EE++ WI+ +
Sbjct: 73  RKHTFKAEHAGVR-------------------TYFFSAESPEEQEAWIQAM 104

>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol (3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human Length = 125

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH--KP 158
           K G+  KQG   K+WKRR+F L++  + YF+   +KEP  +IPL     +EVH     K 
Sbjct: 16  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPL-----KEVHKVQECKQ 70
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +  + FE +   +T             + + A + EE   WIK +S
Sbjct: 71  SDIMMRDNLFEIVTTSRT-------------FYVQADSPEEMHSWIKAVS 107

>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5- Tetrakisphosphate Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 21/108 (19%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRHKPH 159
           KEG+L KQGG  K+WK RWF L+   L YF+     EP  I+ L E   V+  + + + +
Sbjct: 20  KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVN 79
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           CF L    F F                 T Y + A T  E DEWIK L
Sbjct: 80  CFCLV---FPF----------------RTFY-LCAKTGVEADEWIKIL 107

>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Kiaa0053 Protein Length = 118

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
            P K GWL KQ    K+W++R+F+L  + LYY++   D +P+G + L    ++E+     
Sbjct: 7   GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIAT--N 64
Query: 158 PHCFELFTSGFEFIKAC-KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           P     F   FE I A    +  G         Y + A++  E +EW+K L
Sbjct: 65  PEEAGKFV--FEIIPASWDQNRMG------QDSYVLMASSQAEMEEWVKFL 107

>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human Pleckstrin Length = 129

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R FIL +    L+Y++    ++P G I L    V  V      
Sbjct: 20  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
              E   + FE I A +              Y + AAT +E+ EWIK + +
Sbjct: 80  RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 117

>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5 Length = 109

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R FIL +    L+Y++    ++P G I L    V  V      
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
              E   + FE I A +              Y + AAT +E+ EWIK + +
Sbjct: 69  RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 106

>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of Pleckstrin To 2.1 Angstroms Length = 114

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R FIL +    L+Y++    ++P G I L    V  V      
Sbjct: 11  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 70
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
              E   + FE I A +              Y + AAT +E+ EWIK + +
Sbjct: 71  RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 108

>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin Length = 127

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R FIL +    L+Y++    ++P G I L    V  V      
Sbjct: 24  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 83
Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
              E   + FE I A +              Y + AAT +E+ EWIK + +
Sbjct: 84  RKSE-EENLFEIITADEVH------------YFLQAATPKERTEWIKAIQM 121

>pdb|2Y7B|A Chain A, Crystal Structure Of The Ph Domain Of Human Actin-Binding Protein Anillin Anln Length = 134

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 112 YKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDRHKPHCFELFTSGF 168
           + +W RRW +L+  C+ Y+ Y  D   K P G I L N   R++   ++  C    T  F
Sbjct: 20  FGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNT--F 77
Query: 169 EFIKA---CKTDSEGKVVEGKHTVYR----MSAATAEEKDEWIKCLS 208
           E I      + D E  V + + T+      +SA T EE+D W++ L+
Sbjct: 78  ELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLN 124

>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology Domain Of Sbf1 From Mouse Length = 117

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 102 EGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH 159
           EG L+K+G   K WK RWF+L+     L Y+++  D E +G+I L  +            
Sbjct: 11  EGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEV------------ 58
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHT--VYRMSAATAEEKDEWI----KCLS 208
             E    G   I A KT  E    + K T  VY   A       +W+     CLS
Sbjct: 59  --EAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111

>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain Length = 113

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           +EG+L K+G  + +WK  W +L +  + +++  +D  P+G+IPL+   +          C
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTS-------PC 59
Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
            +     F F          K+   K   +   AA  EE+D W++
Sbjct: 60  QDFGKRMFVF----------KITTTKQQDHFFQAAFLEERDAWVR 94

>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human Pleckstrin 2 Length = 129

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE---PRGIIPLENIQVREVHDRHK 157
           K+G+L KQG + K+WK R F+L     +   Y   KE   P G   L    V  + D   
Sbjct: 20  KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79
Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           P   +    G  F          KV+    T Y + A++  E+ EWI+ +
Sbjct: 80  PTGVKGNVQGNLF----------KVITKDDTHYYIQASSKAERAEWIEAI 119

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 98  NPD----KEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQV 149
           NP+    + GWL+KQ     K WK+RWF+L+D CL+Y+    ++   G I L + Q+
Sbjct: 16  NPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQI 72

>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein From Human Length = 115

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRHKPH 159
           K+G++ K+G R K+W  RWF+L    + Y+     K+ +G I L EN  V  + D+    
Sbjct: 10  KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKK 69
Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           C         F+  C   +           + +SA+  ++K EWI+ +
Sbjct: 70  CL--------FLVKCFDKT-----------FEISASDKKKKQEWIQAI 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	3e-49
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	1e-44
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	2e-18
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	1e-35
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	1e-16
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	3e-33
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	1e-15
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	2e-32
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	5e-15
2d9y_A	117	Pleckstrin homology domain-containing protein fami	2e-32
2d9y_A	117	Pleckstrin homology domain-containing protein fami	6e-15
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	2e-32
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	3e-32
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	6e-14
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	3e-32
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	1e-10
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	3e-06
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	7e-32
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	5e-12
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	8e-32
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	7e-15
2yry_A	122	Pleckstrin homology domain-containing family A mem	2e-31
2yry_A	122	Pleckstrin homology domain-containing family A mem	3e-14
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	8e-31
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	5e-13
2dkp_A	128	Pleckstrin homology domain-containing family A mem	2e-30
2dkp_A	128	Pleckstrin homology domain-containing family A mem	1e-14
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	2e-30
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	3e-15
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	6e-30
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	2e-14
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	2e-29
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	1e-14
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	5e-29
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	2e-12
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	3e-28
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	5e-13
3cxb_B	112	Pleckstrin homology domain-containing family M mem	3e-28
3cxb_B	112	Pleckstrin homology domain-containing family M mem	2e-11
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	6e-28
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	5e-12
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	3e-27
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	3e-13
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	6e-27
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	1e-09
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	8e-27
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	2e-10
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	2e-26
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	3e-11
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	5e-26
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	2e-07
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	4e-04
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	5e-25
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	7e-11
2d9v_A	130	Pleckstrin homology domain-containing protein fami	8e-24
2d9v_A	130	Pleckstrin homology domain-containing protein fami	2e-11
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	2e-23
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	2e-11
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	2e-23
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	4e-11
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	2e-23
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	8e-23
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	1e-10
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	6e-22
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	2e-11
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	1e-21
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	2e-09
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	2e-04
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	1e-21
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	4e-11
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	2e-20
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	4e-08
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-19
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-10
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-04
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	3e-19
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	1e-09
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	4e-19
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	4e-08
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	2e-18
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	2e-09
1wi1_A	126	Calcium-dependent activator protein for secretion,	3e-18
1wi1_A	126	Calcium-dependent activator protein for secretion,	1e-09
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	8e-18
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	3e-17
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	5e-16
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	1e-06
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	1e-15
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	2e-05
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	2e-14
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	6e-08
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	2e-14
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	1e-04
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	3e-13
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	3e-05
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	1e-12
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	2e-12
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	1e-04
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	2e-12
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	2e-05
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	1e-11
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	8e-11
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-04
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	1e-10
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	3e-05
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	2e-10
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	1e-04
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	6e-10
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	9e-10
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	6e-04
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	1e-09
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	4e-09
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	1e-08
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	2e-08
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	4e-04
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	8e-08
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-07
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	1e-07
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	8e-07
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-06
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	1e-06
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	2e-05
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	6e-05
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	2e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-04
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	2e-04
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	3e-04
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	4e-04
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	4e-04
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	9e-04

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347

 Score =  162 bits (412), Expect = 3e-49
 Identities = 90/132 (68%), Positives = 109/132 (82%), Gaps = 2/132 (1%)

Query: 78  TDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE 137
            ++PFKIPEDDGNDL +TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKE
Sbjct: 192 KNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKE 251

Query: 138 PRGIIPLENIQVREVHDRHKPHCFELFTS--GFEFIKACKTDSEGKVVEGKHTVYRMSAA 195
           PRGIIPLEN+ +REV D  KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA 
Sbjct: 252 PRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAP 311

Query: 196 TAEEKDEWIKCL 207
           + EEK+EW+K +
Sbjct: 312 SPEEKEEWMKSI 323

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score =  144 bits (364), Expect = 1e-44
 Identities = 78/116 (67%), Positives = 94/116 (81%), Gaps = 2/116 (1%)

Query: 95  TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
           TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 1   TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD 60

Query: 155 RHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K + 
Sbjct: 61  PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 3  TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
          TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK  
Sbjct: 1  TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP 44

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score =  120 bits (303), Expect = 1e-35
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 15/114 (13%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--- 154
            P K GWL KQ    K+W++R+F+L  + LYY++   D +P+G + L    ++E+     
Sbjct: 7   GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPE 66

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                 FE+  + ++  +                 Y + A++  E +EW+K L 
Sbjct: 67  EAGKFVFEIIPASWDQNRM------------GQDSYVLMASSQAEMEEWVKFLR 108

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
           P K GWL KQ    K+W++R+F+L  + LYY++   D 
Sbjct: 7  GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDT 45

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score =  115 bits (289), Expect = 3e-33
 Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 21/111 (18%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ-VREVHDRH 156
              KEG+L KQGG  K+WK RWF L+   L YF+     EP  I+ L     V+  + + 
Sbjct: 17  LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQE 76

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           + +CF L                          + + A T  E DEWIK L
Sbjct: 77  RVNCFCLVFP--------------------FRTFYLCAKTGVEADEWIKIL 107

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
             KEG+L KQGG  K+WK RWF L+   L YF+     
Sbjct: 17 LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSP 55

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score =  112 bits (282), Expect = 2e-32
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 21/113 (18%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--R 155
              +EG+L K+G  + +WK  W +L +  + +++  +D  P+G+IPL+   +        
Sbjct: 4   KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 63

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
            +   F++ T+                   K   +   AA  EE+D W++ ++
Sbjct: 64  KRMFVFKITTT-------------------KQQDHFFQAAFLEERDAWVRDIN 97

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 67.4 bits (165), Expect = 5e-15
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
             +EG+L K+G  + +WK  W +L +  + +++  +D S 
Sbjct: 4  KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP 44

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score =  112 bits (282), Expect = 2e-32
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)

Query: 98  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--- 153
              K GWL+KQ     K W +RWF+L D+CL+Y++   ++   G IPL + +V  V    
Sbjct: 10  PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSD 69

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           +  + H F+   +G                      Y  SA + EE++ WI+ + 
Sbjct: 70  NISRKHTFKAEHAG-------------------VRTYFFSAESPEEQEAWIQAMG 105

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 67.4 bits (165), Expect = 6e-15
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 6  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA 46
             K GWL+KQ     K W +RWF+L D+CL+Y++   ++S 
Sbjct: 10 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI 51

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score =  113 bits (283), Expect = 2e-32
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE---PRGIIPLENIQVREVHD 154
              K+G+L KQG + K+WK R F+L     +   Y   KE   P G   L    V  + D
Sbjct: 17  TVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALED 76

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
              P   +    G  F          KV+    T Y + A++  E+ EWI+ + 
Sbjct: 77  NGVPTGVKGNVQGNLF----------KVITKDDTHYYIQASSKAERAEWIEAIK 120

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score =  112 bits (282), Expect = 3e-32
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
              K+G L KQG R K+WK R FIL  +   L+Y++    ++P G I L    V  V   
Sbjct: 17  VIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESN 76

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                           +  + ++  +++      Y + AAT +E+ EWIK + 
Sbjct: 77  SNG-------------RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQ 116

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 65.2 bits (159), Expect = 6e-14
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDK 44
             K+G L KQG R K+WK R FIL  +   L+Y++    +
Sbjct: 17 VIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE 57

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score =  112 bits (281), Expect = 3e-32
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
              WL K  G  KSW + W +L    L  ++   + +  G + L   ++ E   +    C
Sbjct: 10  MADWL-KIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFC 68

Query: 161 FELFTSGFEFIK---ACKTDSEGKVVEGKHTVYRM-SAATAEEKDEWIKCLSL 209
           F+LF    + I      K ++ G + +   + Y +  A +  +   W+  L L
Sbjct: 69  FKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL 121

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSAC 47
             WL K  G  KSW + W +L    L  ++   +    
Sbjct: 10 MADWL-KIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWV 47

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 54 GRYKSWKRRWFILNDKCLYYFEYTTDK 80
          G  KSW + W +L    L  ++   + 
Sbjct: 18 GTLKSWTKLWCVLKPGVLLIYKTQKNG 44

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score =  114 bits (287), Expect = 7e-32
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 45/173 (26%)

Query: 41  TTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPD 100
            +      +  + G   SWKRRW +L D+   +F    +                     
Sbjct: 19  GSPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQE-------------------AL 59

Query: 101 KEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
           K+GWL   GG       ++WK+RWF+L    L YFE  ++++ +G + + + +    +  
Sbjct: 60  KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTN 119

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
            K +  ++  +        +T             + + A + E+  +W   LS
Sbjct: 120 -KENGIDIIMAD-------RT-------------FHLIAESPEDASQWFSVLS 151

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 61.9 bits (150), Expect = 5e-12
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 6   NPDKEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKSA 46
              K+GWL   GG       ++WK+RWF+L    L YFE  +++  
Sbjct: 57  EALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKL 102

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score =  110 bits (278), Expect = 8e-32
 Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 20/112 (17%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH- 156
                G+L++  G  K WK  WF++ +K LY +  + D       PL    V  V D + 
Sbjct: 7   GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENS 66

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           +   F+L   G                      Y   A  A     WI    
Sbjct: 67  ESKVFQLLHKG-------------------MVFYVFKADDAHSTQRWIDAFQ 99

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 67.0 bits (164), Expect = 7e-15
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
               G+L++  G  K WK  WF++ +K LY +  + D +A
Sbjct: 7  GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA 47

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score =  110 bits (276), Expect = 2e-31
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)

Query: 98  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH--- 153
              K GWL+KQ     K W +RWF+L D+CL+Y++   ++   G IPL + +V  V    
Sbjct: 21  PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSD 80

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           +  + H F+   +G                      Y  SA + EE++ WI+ + 
Sbjct: 81  NISRKHTFKAEHAG-------------------VRTYFFSAESPEEQEAWIQAMG 116

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 6  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA 46
             K GWL+KQ     K W +RWF+L D+CL+Y++   ++S 
Sbjct: 21 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI 62

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score =  108 bits (271), Expect = 8e-31
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 101 KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R FIL  +   L+Y++    ++P G I L    V  V      
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                        +  + ++  +++      Y + AAT +E+ EWIK + 
Sbjct: 69  -------------RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQ 105

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 62.0 bits (151), Expect = 5e-13
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 9  KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDK 44
          K+G L KQG R K+WK R FIL  +   L+Y++    +
Sbjct: 9  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE 46

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score =  107 bits (270), Expect = 2e-30
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 23/115 (20%)

Query: 98  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV---H 153
              + GWL+KQ     K WK+RWF+L+D CL+Y+    ++   G I L + Q+  +    
Sbjct: 20  PVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSED 79

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             ++ + F+                           Y     T +E + W+K + 
Sbjct: 80  HINRKYAFKAAHPN-------------------MRTYYFCTDTGKEMELWMKAML 115

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 6  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSA 46
             + GWL+KQ     K WK+RWF+L+D CL+Y+    ++  
Sbjct: 20 PVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGI 61

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score =  107 bits (269), Expect = 2e-30
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 24/112 (21%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI----QVREVHDRH 156
           K G+  KQG   K+WKRR+F L++  + YF+   +KEP  +IPL+ +    + ++     
Sbjct: 16  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           + + FE+ T+                       + + A + EE   WIK +S
Sbjct: 76  RDNLFEIVTT--------------------SRTFYVQADSPEEMHSWIKAVS 107

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          K G+  KQG   K+WKRR+F L++  + YF+   +K
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEK 51

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score =  106 bits (266), Expect = 6e-30
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 22/111 (19%)

Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPL-ENIQVREVHDRH-K 157
            K+G++ K+G R K+W  RWF+L    + Y+     K+ +G I L EN  V  + D+  K
Sbjct: 9   LKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGK 68

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
              F +                          + +SA+  ++K EWI+ + 
Sbjct: 69  KCLFLVKCF--------------------DKTFEISASDKKKKQEWIQAIH 99

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 8  DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
           K+G++ K+G R K+W  RWF+L    + Y+     K
Sbjct: 9  LKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLK 45

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score =  105 bits (263), Expect = 2e-29
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)

Query: 99  PDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV---HD 154
               GWL KQ     + WKRRWF+L+  CL+Y++ + ++   G + L +  +R       
Sbjct: 11  VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAP 70

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           R +   F     G                      Y ++A T E+   W++ L 
Sbjct: 71  RGRRFTFTAEHPGMR-------------------TYVLAADTLEDLRGWLRALG 105

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 7  PDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSAC 47
              GWL KQ     + WKRRWF+L+  CL+Y++ + ++S  
Sbjct: 11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVL 52

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score =  103 bits (259), Expect = 5e-29
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 27/119 (22%)

Query: 98  NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV- 152
           +  K+G+L K+   +      W++RW +++    YY+     K+P+G   ++   VR   
Sbjct: 2   SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAP 61

Query: 153 ---HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               D  K  CFEL +                        Y  +A +  E  +W+  +S
Sbjct: 62  HLRRDSKKESCFELTSQD-------------------RRTYEFTATSPAEARDWVDQIS 101

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 6  NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSA 46
          +  K+G+L K+   +      W++RW +++    YY+     K  
Sbjct: 2  SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP 46

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score =  102 bits (255), Expect = 3e-28
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 18/115 (15%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
               EG L+K+G   K WK RWF+L      L Y+++  D E +G+I L  ++       
Sbjct: 7   GRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGT- 65

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT--VYRMSAATAEEKDEWIKCLS 208
                          I A KT  E    + K T  VY   A       +W+  + 
Sbjct: 66  -------------PTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQ 107

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDK 44
              EG L+K+G   K WK RWF+L      L Y+++  D 
Sbjct: 7  GRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDT 47

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score =  101 bits (254), Expect = 3e-28
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 26/115 (22%)

Query: 101 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ---VREVH 153
           KEG L  + G      + WK  + +L++  LY +   TD  P   + +   Q    R  +
Sbjct: 2   KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRAN 61

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
              +PH F++  S                         +SA +  E  EW++ L 
Sbjct: 62  TTDRPHAFQVILSD-------------------RPCLELSAESEAEMAEWMQHLC 97

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 9  KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSA 46
          KEG L  + G      + WK  + +L++  LY +   TD   
Sbjct: 2  KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP 43

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score =  101 bits (254), Expect = 6e-28
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 27/121 (22%)

Query: 96  FFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE 151
                K G+L K+   +      W++RW  L+    YY+    DK+ +G   ++   VR 
Sbjct: 14  LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRM 73

Query: 152 V----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                 D  K  CFE+                         +Y+ +AA+ ++ +EW++ L
Sbjct: 74  NNTLRKDGKKDCCFEICAPD-------------------KRIYQFTAASPKDAEEWVQQL 114

Query: 208 S 208
            
Sbjct: 115 K 115

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 60.3 bits (146), Expect = 5e-12
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 4  FFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSAC 47
               K G+L K+   +      W++RW  L+    YY+    DK   
Sbjct: 14 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK 61

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 99.4 bits (248), Expect = 3e-27
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 24/112 (21%)

Query: 98  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
              K GWL K   +  + +++RW   +   + Y+    +   +GIIPL  I    V    
Sbjct: 7   GKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRV---Q 63

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             + FE+ T+                       +       EE+++WI  L 
Sbjct: 64  GDNKFEVVTT--------------------QRTFVFRVEKEEERNDWISILL 95

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 62.4 bits (152), Expect = 3e-13
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 6  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDK 44
             K GWL K   +  + +++RW   +   + Y+    + 
Sbjct: 7  GKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEM 46

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 99.7 bits (248), Expect = 6e-27
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 31/121 (25%)

Query: 100 DKEGWLWKQGGR------YKSWKRRWFIL------NDKCLYYFEYTTDKEPRGIIPLENI 147
            K GWL+K           +S+KRR+F L      +    +Y +    KEP+G I L++ 
Sbjct: 19  TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC 78

Query: 148 QVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                +++ +   FEL                        + Y ++A +  E +EWI  L
Sbjct: 79  MGVVQNNKVRRFAFELKMQD-------------------KSSYLLAADSEVEMEEWITIL 119

Query: 208 S 208
           +
Sbjct: 120 N 120

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 12/51 (23%)

Query: 8  DKEGWLWKQGGR------YKSWKRRWFIL------NDKCLYYFEYTTDKSA 46
           K GWL+K           +S+KRR+F L      +    +Y +    K  
Sbjct: 19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP 69

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 98.6 bits (245), Expect = 8e-27
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 98  NPDKEGWLW--KQGGRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREV 152
           + ++ G+L   +    + +W RRW +L+  C+ Y+ Y  D   K P G I L N   R++
Sbjct: 4   SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQI 63

Query: 153 HDRHK-----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
              ++      + FEL T   +     +T           T   +SA T EE+D W++ L
Sbjct: 64  EPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKL 123

Query: 208 S 208
           +
Sbjct: 124 N 124

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 55.4 bits (133), Expect = 2e-10
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 6  NPDKEGWLW--KQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          + ++ G+L   +    + +W RRW +L+  C+ Y+ Y  D+
Sbjct: 4  SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDE 44

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 99.8 bits (248), Expect = 2e-26
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 27/140 (19%)

Query: 77  TTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEY 132
             D                     K G+L K+   +      W++RW  L+    YY+  
Sbjct: 84  KDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGS 143

Query: 133 TTDKEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHT 188
             DK+ +G   ++   VR       D  K  CFE+                         
Sbjct: 144 DKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD-------------------KR 184

Query: 189 VYRMSAATAEEKDEWIKCLS 208
           +Y+ +AA+ ++ +EW++ L 
Sbjct: 185 IYQFTAASPKDAEEWVQQLK 204

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 6   NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSAC---LIENSSGRYKS 58
              K G+L K+   +      W++RW  L+    YY+    DK       I+    R  +
Sbjct: 105 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNN 164

Query: 59  WKRRWFILNDKCLYYFEYTTDK 80
             R+    + K    FE     
Sbjct: 165 TLRK----DGKKDCCFEICAPD 182

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 96.3 bits (239), Expect = 5e-26
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 16/111 (14%)

Query: 101 KEGWLWKQGGRYK--SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RH 156
           ++GWL            K  WF+L  + L +++   +KE + ++ ++N+++R+V      
Sbjct: 14  RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 73

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             H F LF             +E + V   +    ++  T EE D W    
Sbjct: 74  SKHIFALFN------------TEQRNVYKDYRQLELACETQEEVDSWKASF 112

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 9  KEGWLWKQGGRYK--SWKRRWFILNDKCLYYFEYTTDKSAC 47
          ++GWL            K  WF+L  + L +++   +K   
Sbjct: 14 RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKK 54

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 48 LIENSSGRYKSWKRRWFILNDKCLYYFEYTTDK 80
           I N        K  WF+L  + L +++   +K
Sbjct: 19 TINNIGIMKGGSKEYWFVLTAENLSWYKDDEEK 51

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 93.6 bits (233), Expect = 5e-25
 Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 25/115 (21%)

Query: 98  NPDKEGWLWKQGGR--YKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVH 153
                G+L K GG+   + WK RWF        LYY     D  P   I L +  V +  
Sbjct: 7   GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSA-VFDCK 65

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
              +   FE+ T                       V  + AAT +    W++ L 
Sbjct: 66  ADAEEGIFEIKTPS--------------------RVITLKAATKQAMLYWLQQLQ 100

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 6  NPDKEGWLWKQGGR--YKSWKRRWFIL--NDKCLYYFEYTTDK 44
               G+L K GG+   + WK RWF        LYY     D 
Sbjct: 7  GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA 49

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 90.8 bits (225), Expect = 8e-24
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYF--EYTTDKEPRGIIPLENIQVREVHDRHK 157
           + GWLW+Q    + WKR WF L  D  L Y+  E   D+E R +I      ++   +   
Sbjct: 10  RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
               E  +                V   + +   + A T ++   W   L
Sbjct: 70  VQPPEGRSRDGLL----------TVNLREGSRLHLCAETRDDAIAWKTAL 109

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 9  KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKS 45
          + GWLW+Q    + WKR WF L  D  L Y+   T + 
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQD 47

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 89.6 bits (222), Expect = 2e-23
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 13/111 (11%)

Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPL--ENIQVREVHDRHK 157
           K GWL +Q    K WK+ WF L +D  L Y++  T +     + +  + I +R   +   
Sbjct: 7   KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +  +               ++V        + A + ++   W   L 
Sbjct: 67  TQPPDGKSKDCML----------QIVCRDGKTISLCAESTDDCLAWKFTLQ 107

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 9  KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKSA 46
          K GWL +Q    K WK+ WF L +D  L Y++  T ++ 
Sbjct: 7  KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNI 45

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 89.6 bits (222), Expect = 2e-23
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 23/114 (20%)

Query: 101 KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPLENIQVREV----HDR 155
           KEGWL K+G   K+W+ R+F+L ND     ++       +   PL N  V +      +R
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM-SAATAEEKDEWIKCLS 208
            +P+ F +                   ++    + R     T EE++EW   + 
Sbjct: 70  PRPNTFIIRC-----------------LQWTTVIERTFHVETPEEREEWTTAIQ 106

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 9  KEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKSACLIE 50
          KEGWL K+G   K+W+ R+F+L ND     ++           
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREA 52

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 89.9 bits (222), Expect = 2e-23
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 98  NPDKEGWLWKQGGR--YKSWKRRWFIL-NDKCLYYFEYTTD---KEPRGIIPLENIQVRE 151
            P K+ +L K+ G    K WK+++  L ++  L Y     D         + L    V+ 
Sbjct: 3   IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVK- 61

Query: 152 VHDRHKPHCFELFTSGFE--FIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           V  +  P     F         +A + + E  +V      +   AA+ EE+D W++ +
Sbjct: 62  VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAI 119

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 88.1 bits (218), Expect = 8e-23
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 99  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEY---TTDKEPRGIIPLENIQVREVHDR 155
             K G+L ++    KS+ + +++L    L+ F+      D  P   + L    V E   +
Sbjct: 6   EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRK 65

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           +         S  +F+   K +    ++   H  +   A + E    W   L
Sbjct: 66  NSTSSPNSTGSDAKFVLHAKQN---GIIRRGHN-WVFKADSYESMMSWFDNL 113

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 7  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENS 52
            K G+L ++    KS+ + +++L    L+ F+    K   +   S
Sbjct: 6  EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMS 51

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 85.7 bits (212), Expect = 6e-22
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 24/113 (21%)

Query: 97  FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR 155
           +  +K+G+L K+     K W+RR   + +  L     T++++P   + L   QV+   + 
Sbjct: 8   YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQP-AKLNLLTCQVKPNAED 66

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                F+L +                     +  Y   A   ++   WI  L+
Sbjct: 67  --KKSFDLIS--------------------HNRTYHFQAEDEQDYVAWISVLT 97

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 5  FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDK 44
          +  +K+G+L K+     K W+RR   + +  L     T+++
Sbjct: 8  YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNR 48

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 84.5 bits (209), Expect = 1e-21
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 22/111 (19%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDRH 156
             +   +L         WK RW  + D  L++++     K  +  + L   +V       
Sbjct: 7   GLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPD 64

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
             + F +   G E                   + ++ A ++EE   W+  L
Sbjct: 65  HLYSFRILHKGEE-------------------LAKLEAKSSEEMGHWLGLL 96

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
            +   +L         WK RW  + D  L++++       
Sbjct: 7  GLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSKV 45

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 57 KSWKRRWFILNDKCLYYFEYTTD 79
            WK RW  + D  L++++    
Sbjct: 20 SQWKSRWCSVRDNHLHFYQDRNR 42

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 84.0 bits (208), Expect = 1e-21
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 24/113 (21%)

Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKEPRGIIPLENIQVREVHDRHK 157
           ++ G L K       W+ RW +L +  L Y+  E  T+   RG I L    +        
Sbjct: 2   ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITP--HDFD 59

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
              F++  +                     +V+ + A   + + +WI  +  H
Sbjct: 60  ECRFDISVN--------------------DSVWYLRAQDPDHRQQWIDAIEQH 92

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 8  DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          ++ G L K       W+ RW +L +  L Y++   + 
Sbjct: 2  ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDET 38

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 82.9 bits (204), Expect = 2e-20
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 87  DDGNDLMHTFFNPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEY-TTDKEPRG 140
              +   H  FN   E  L K+  +       ++K R F+L    L Y+E     K  +G
Sbjct: 3   HHHHHHSHMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKG 62

Query: 141 IIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEK 200
            I +  I+  E+                + +  C+     +VV   +T+Y + A + + +
Sbjct: 63  FIDVSKIKCVEIVK------------NDDGVIPCQNKYPFQVVHDANTLY-IFAPSPQSR 109

Query: 201 DEWIKCLS 208
           D W+K L 
Sbjct: 110 DLWVKKLK 117

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 2  HTFFNPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEYTTDKSAC 47
          H  FN   E  L K+  +       ++K R F+L    L Y+E   +K   
Sbjct: 10 HMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYR 60

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 22/110 (20%)

Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLEN-IQVREVHDRHKP 158
             EG+L  +   Y+ ++  W  L    L+++           + + +   + E +   K 
Sbjct: 19  YFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKN 78

Query: 159 -HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
              F L                           ++     E  +EW   +
Sbjct: 79  CAKFTLVL--------------------PKEEVQLKTENTESGEEWRGFI 108

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 8  DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
            EG+L  +   Y+ ++  W  L    L+++        
Sbjct: 19 YFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIY 57

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 4/31 (12%), Positives = 11/31 (35%)

Query: 53 SGRYKSWKRRWFILNDKCLYYFEYTTDKPFK 83
             Y+ ++  W  L    L+++       + 
Sbjct: 28 RSGYREYEHYWTELRGTTLFFYTDKKSIIYV 58

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 78.8 bits (194), Expect = 3e-19
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 25/114 (21%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYF--EYTTDKEPRGIIPLENIQVREVH 153
             +  G+L K       W+ R+F+LN++   L YF  E + +++PRG + L    +    
Sbjct: 7   GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD 66

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           +    H F +  +                       Y++ A  A+E+  W+  L
Sbjct: 67  E--DSHTFTVNAAS-------------------GEQYKLRATDAKERQHWVSRL 99

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 43
            +  G+L K       W+ R+F+LN++      +  +
Sbjct: 7  GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNE 44

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 129

 Score = 78.9 bits (194), Expect = 4e-19
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-------QVREVH 153
           KEGW+     R    KR ++ L+ KCL  F+  +  +    IPL  I           + 
Sbjct: 10  KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNIS 69

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
               PHCFE+ T    +                + V   +    +    W K +
Sbjct: 70  QGSNPHCFEIITDTMVYFVGENNGD-----SSHNPVLAATGVGLDVAQSWEKAI 118

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 129

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          KEGW+     R    KR ++ L+ KCL  F+  +  
Sbjct: 10 KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGS 45

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 76.0 bits (187), Expect = 2e-18
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 23/111 (20%)

Query: 102 EGWLWKQGGRYKSWKRRWFILNDKCLYYF--EYTTDKEPRGIIPLENIQVREVHDRHKPH 159
           EG L+K       W+ RWF+L++  L Y+  +    K  +G I +   +++         
Sbjct: 2   EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKV--HSADNT 59

Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
             EL   G                      + M A  A E+  W+  L   
Sbjct: 60  RMELIIPG-------------------EQHFYMKAVNAAERQRWLVALGSS 91

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
          EG L+K       W+ RWF+L++  L Y++   D  
Sbjct: 2  EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVC 37

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 76.5 bits (188), Expect = 3e-18
 Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 29/119 (24%)

Query: 98  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYF----EYTTDKEPRGIIPLENIQVREV 152
                G+LW  G   +K WK+R+F+L     Y F          EP+ ++ L+   V   
Sbjct: 7   GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYT 66

Query: 153 ----HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                       F     G                         ++   +++  W++ +
Sbjct: 67  DPQPGLEGGRAFFNAVKEG--------------------DTVIFASDDEQDRILWVQAM 105

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 6  NPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKS 45
               G+LW  G   +K WK+R+F+L     Y F   + + 
Sbjct: 7  GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYRE 47

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 76.5 bits (187), Expect = 8e-18
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 18/125 (14%)

Query: 101 KEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDK----EPRGIIPLENIQVRE 151
            E    K+          ++K+  F+L    L Y+EY  ++      +G I +E I   E
Sbjct: 5   LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64

Query: 152 VHDRHKPHCFELF--------TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
                K    E          +   +     +     +VV  +  +Y + + T E +  W
Sbjct: 65  TVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLY-VFSPTEELRKRW 123

Query: 204 IKCLS 208
           I  L 
Sbjct: 124 IHQLK 128

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 78.2 bits (192), Expect = 3e-17
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 65/250 (26%)

Query: 1   MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTD---KSACLIENSSGR 55
              +    +EG+LWK+G     +  R F+L ++   L YF        K+   IE+ +  
Sbjct: 140 QEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNAT 199

Query: 56  YKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTF------------------- 96
           ++  K      +   + Y +  + +   I  +DG +++  F                   
Sbjct: 200 FQPAKI--GHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGAS 257

Query: 97  ---------FNPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLEN 146
                     N  KEG++ K G +  + +++RWF ++D+ L YF+   D   RG + + +
Sbjct: 258 DADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGS 317

Query: 147 ---------IQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATA 197
                             H PH   + T   +F+                     +  T 
Sbjct: 318 KESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFL--------------------FACETE 357

Query: 198 EEKDEWIKCL 207
            ++ EW+   
Sbjct: 358 SDQREWVAAF 367

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 70.4 bits (172), Expect = 5e-16
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 14/111 (12%)

Query: 101 KEGWLW-KQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
             G+L  +       + RR+FIL     CL ++         G   + ++Q+  +     
Sbjct: 17  ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSI 76

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +   + F F           V+      Y + A   ++  +W++ L+
Sbjct: 77  ATPKQKPKTPFCF-----------VINALSQRYFLQANDQKDLKDWVEALN 116

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 9  KEGWLW-KQGGRYKSWKRRWFILNDKCLYYFEYTTDKS 45
            G+L  +       + RR+FIL+ +      Y  +  
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQ 54

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 69.3 bits (169), Expect = 1e-15
 Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 34/128 (26%)

Query: 99  PDKEGWLWK-------QGGRYKSWKRRWFILNDKCLYYFEYTTDK---------EPRGII 142
           P  EG L +       +     SW R W +L+   L Y+   + +          P   +
Sbjct: 1   PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60

Query: 143 PLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
            +    V+   D   P  F+L                      K  VY+    +      
Sbjct: 61  SIVGWMVQLPDDPEHPDIFQLNNP------------------DKGNVYKFQTGSRFHAIL 102

Query: 203 WIKCLSLH 210
           W K L   
Sbjct: 103 WHKHLDDA 110

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 7/47 (14%)

Query: 7  PDKEGWLWK-------QGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
          P  EG L +       +     SW R W +L+   L Y+   + +  
Sbjct: 1  PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGT 47

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 16/187 (8%)

Query: 31  NDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGN 90
            ++CL   E      + +   S   ++    ++    +   ++ E       +       
Sbjct: 61  LERCLEDHELVVQVESTMASESKFLFRKNYAKYEFFKNPMNFFPEQMVTWS-QQSNGSQT 119

Query: 91  DLMHTFFN----PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPR---GIIP 143
            L+  F N    P+ +G+L  +    KSWK+ +  L    LY     T   PR    +  
Sbjct: 120 QLLQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLAD 179

Query: 144 LENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
           LE+  +  +    K +      +  +     K +   KV      +  + A   + +  W
Sbjct: 180 LEDSNIFSLIAGRKQYN-----APTDHGLCIKPN---KVRNETKELRLLCAEDEQTRTSW 231

Query: 204 IKCLSLH 210
           +    L 
Sbjct: 232 MTAFRLL 238

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 50.6 bits (120), Expect = 6e-08
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 6   NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
           +P+ +G+L  +    KSWK+ +  L    LY     T  + 
Sbjct: 131 SPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAP 171

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDK-------CLYYFE-----YTTDKEPRGIIPLENI- 147
           K G+L K     KS  +R+F+L           L Y+E           P+  IPLE+  
Sbjct: 12  KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 67

Query: 148 QVREVHDRHKPHCFELFTSGFEFIKACKTDSE 179
            + +  D    H   L+T    F  A  +++E
Sbjct: 68  NINKRADSKNKHLVALYTRDEHFAIAADSEAE 99

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEY 40
          K G+L K     KS  +R+F+L          
Sbjct: 12 KVGYLRKP----KSMHKRFFVLRAASEAGGPA 39

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 64.0 bits (155), Expect = 3e-13
 Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 35/128 (27%)

Query: 98  NPDKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYF----EYTTDKEPRGIIP 143
           +  KEGWL           + GG  + WK+ + +L    LY +    E TT  E    I 
Sbjct: 2   DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPIS 61

Query: 144 LENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
           +    +   +   K  + F L TS  E                        A   ++   
Sbjct: 62  VNACLIDISYSETKRKNVFRLTTSDCE--------------------CLFQAEDRDDMLA 101

Query: 203 WIKCLSLH 210
           WIK +   
Sbjct: 102 WIKTIQES 109

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 10/43 (23%)

Query: 6  NPDKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYF 38
          +  KEGWL           + GG  + WK+ + +L    LY +
Sbjct: 2  DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLY 44

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 27/113 (23%)

Query: 103 GWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKEPRGIIPLENIQVREVHDR---H 156
           G L       ++W   W  +       L+    + D      IPL + ++          
Sbjct: 12  GPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLD 70

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL 209
             H ++L                          + +SA++AE + +W++ LS 
Sbjct: 71  SGHVWKLQW--------------------AKQSWYLSASSAELQQQWLETLST 103

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-------QVREVH 153
           +EGW+     +    KR ++ L+ KC+  F+  T       IPL  I           V 
Sbjct: 10  REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVP 69

Query: 154 DRHKPHCFELFTSGFEF 170
               PHCFE+ T+   +
Sbjct: 70  PGTNPHCFEIVTANATY 86

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK 44
          +EGW+     +    KR ++ L+ KC+  F+  T  
Sbjct: 10 REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTN 45

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 22/118 (18%)

Query: 99  PDKEGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVR-EV 152
           P+ +  L     +    K +++ W +  +  L Y++   +   +P   + L+  +V  +V
Sbjct: 9   PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDV 68

Query: 153 HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH 210
           +   +  C +L                        +   +     ++   W+    L 
Sbjct: 69  NVSGQKFCIKLLV----------------PSPEGMSEIYLRCQDEQQYARWMAGCRLA 110

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 7  PDKEGWLW---KQGGRYKSWKRRWFILNDKCLYYF 38
          P+ +  L     +    K +++ W +  +  L Y+
Sbjct: 9  PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYY 43

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 27/179 (15%)

Query: 32  DKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGND 91
           +      E         ++N      S         +      +          +   N 
Sbjct: 216 ENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNR 275

Query: 92  LMHTFFNPDKEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ 148
            +         G+L  +   G    +W R+++      L       D      + ++N  
Sbjct: 276 NLTRKA-----GYLNARNKTGLVSSTWDRQFYFTQGGNLMSQ-ARGDVAGGLAMDIDNCS 329

Query: 149 VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           V  V    + +CF++ +                          + A + ++ +EWI  +
Sbjct: 330 VMAVDCEDRRYCFQITSF------------------DGKKSSILQAESKKDHEEWICTI 370

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 58.8 bits (141), Expect = 8e-11
 Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 38/129 (29%)

Query: 101 KEGWLWKQGG------------RYKSWKRRWFILNDKCLYYFEYTTDKEP------RGII 142
           K G L  +                + WK  W  L    L+++E             +  +
Sbjct: 13  KAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAV 72

Query: 143 PLENIQVREVHDRH-KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD 201
            +EN  V+ V +   K   F L  S                       +     +  E +
Sbjct: 73  WVENSIVQAVPEHPKKDFVFCLSNSL-------------------GDAFLFQTTSQTELE 113

Query: 202 EWIKCLSLH 210
            WI  +   
Sbjct: 114 NWITAIHSA 122

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 12/43 (27%)

Query: 9  KEGWLWKQGG------------RYKSWKRRWFILNDKCLYYFE 39
          K G L  +                + WK  W  L    L+++E
Sbjct: 13 KAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYE 55

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 101 KEGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
            EGWL    +   +   W +++ I++ K + +++   DKE     P   + + ++     
Sbjct: 3   LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQ--SNPYMVLDIDKLFHVRP 60

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +++ +  + I                    + A + EE+ +W+  L 
Sbjct: 61  VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 9  KEGWLW---KQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
           EGWL    +   +   W +++ I++ K + +++   DK  
Sbjct: 3  LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQ 43

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 37/127 (29%)

Query: 100 DKEGWLWK----QGGRY--KSWKRRWFILNDKCLYYF-----------EYTTDKEPRGII 142
           +K G L      QGGR   K+W   W +L    L ++                  P   +
Sbjct: 13  EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSV 72

Query: 143 PLENIQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD 201
            L    +          +   + T                        + + +    E  
Sbjct: 73  DLRGAALAHGRHLSSRRNVLHIRTI-------------------PGHEFLLQSDHETELR 113

Query: 202 EWIKCLS 208
            W + L 
Sbjct: 114 AWHRALR 120

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 8   DKEGWLWK----QGGRY--KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKR 61
           +K G L      QGGR   K+W   W +L    L ++    +       +  G   S   
Sbjct: 13  EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYR---EPPPTAPSSGWGPAGSRPE 69

Query: 62  RWFILNDKCLYYFEYTTDKP--FKIPEDDGND-LMHTFFNPDKEGWL 105
               L    L +  + + +     I    G++ L+ +    +   W 
Sbjct: 70  SSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWH 116

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 24/125 (19%)

Query: 88  DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---RGIIPL 144
           +G+D+  T  N      +  Q G  +  + R+F+L    L     +        +G IP+
Sbjct: 18  EGDDI-KTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPI 76

Query: 145 ENIQVREVHD-RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
             + V  + +       FE+  S  E                      +     ++  EW
Sbjct: 77  AGMVVNRLDEIEGSDCMFEITGSTVE-------------------RIVVHCNNNQDFQEW 117

Query: 204 IKCLS 208
           ++ L+
Sbjct: 118 MEQLN 122

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 56.1 bits (134), Expect = 9e-10
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 38/130 (29%)

Query: 100 DKEGWLWK------------QGGRYKSWKRRWFILNDKCLYYFEYTTDKEP------RGI 141
            K GWL+             +    + WK+ W  L    L ++E             R  
Sbjct: 12  RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71

Query: 142 IPLENIQVREVHDR-HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEK 200
           +  E+  V+ V +   K H F L  S  +                   VY   A +  + 
Sbjct: 72  LFAEDSIVQSVPEHPKKEHVFCLSNSCGD-------------------VYLFQATSQTDL 112

Query: 201 DEWIKCLSLH 210
           + W+  +   
Sbjct: 113 ENWVTAIHSA 122

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 12/44 (27%)

Query: 8  DKEGWLWK------------QGGRYKSWKRRWFILNDKCLYYFE 39
           K GWL+             +    + WK+ W  L    L ++E
Sbjct: 12 RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYE 55

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 34/123 (27%)

Query: 101 KEGWLWK-----QGGRY---KSWKRRWFILNDKCLYYF------EYTTDKEPRGIIPLEN 146
            EG L +       G+    +SW+  + +L    L ++                 + L  
Sbjct: 10  MEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLAR 69

Query: 147 IQVREVHDRHK-PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
            Q     D  K  H F+L                          Y   A    E   W++
Sbjct: 70  AQGSVAFDYRKRKHVFKLGLQDG-------------------KEYLFQAKDEAEMSSWLR 110

Query: 206 CLS 208
            ++
Sbjct: 111 VVN 113

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 40/129 (31%)

Query: 101 KEGWLWK----QGGRY---KSWKRRWFILNDKCLYYF------------EYTTDKEPRGI 141
           K G L +      G+    K W   W +L    L +F            + +    P   
Sbjct: 10  KAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYT 69

Query: 142 IPLENIQVREV--HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEE 199
           + L    +         + +  EL +                      + Y +   +   
Sbjct: 70  VELRGATLSWAPKDKSSRKNVLELRSR-------------------DGSEYLIQHDSEAI 110

Query: 200 KDEWIKCLS 208
              W K ++
Sbjct: 111 ISTWHKAIA 119

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 30/124 (24%)

Query: 98  NPDKEGWLWKQGGRY--KSWKRRWFILNDKCLYYF----------EYTTDKEPRGIIPLE 145
              K+G+L+ Q  +   K W+R    L                  +    +  R +I L 
Sbjct: 11  GAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLS 70

Query: 146 N-IQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
           + ++V E                         D+    +E K  +Y + AA A E+ +W+
Sbjct: 71  DCLRVAEAGGEASS----------------PRDTSAFFLETKERLY-LLAAPAAERGDWV 113

Query: 205 KCLS 208
           + + 
Sbjct: 114 QAIC 117

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 25/131 (19%)

Query: 85  PEDDGNDLMHTFFNPDKEGWLWKQGGR---YKSWKRRWFILNDKCLYYFEYTTD--KEPR 139
                 D+      P+   ++     +    K +K+ W    D  +  ++   +    P 
Sbjct: 36  TSTILGDITSI---PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPA 92

Query: 140 GIIPLENIQVR-EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAE 198
             + L   +V  +V+   +    +L                  V EG + ++ +     +
Sbjct: 93  HQMNLRGCEVTPDVNISGQKFNIKLLIP---------------VAEGMNEIW-LRCDNEK 136

Query: 199 EKDEWIKCLSL 209
           +   W+    L
Sbjct: 137 QYAHWMAACRL 147

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 7  PDKEGWLWKQGGR---YKSWKRRWFILNDKCLYYF 38
          P+   ++     +    K +K+ W    D  +  +
Sbjct: 47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCY 81

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 88  DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIP 143
           +G+D++         G +      Y   ++R F L D  +   +    +      +G I 
Sbjct: 246 EGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRID 305

Query: 144 LENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
           ++  +V ++ D           + F+              +    V+   A   EEK  W
Sbjct: 306 MDKYEVIDIEDGRDDDFNVSMKNAFKLHN-----------KETEEVHLFFAKKLEEKIRW 354

Query: 204 IKCL 207
           ++  
Sbjct: 355 LRAF 358

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRH 156
             G L +        ++R F L D  L Y +    +      +G + ++ ++V ++ D  
Sbjct: 336 YSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGK 395

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                    + F                     + +     E+K  W+K  
Sbjct: 396 DRDLHVSIKNAFRLH-----------RGATGDSHLLCTRKPEQKQRWLKAF 435

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 10/127 (7%), Positives = 33/127 (25%), Gaps = 36/127 (28%)

Query: 101 KEGWLWK-----QGGR---YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV 152
            EG++ +        +    +SW + +       + +++     +    +        ++
Sbjct: 10  HEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDL 69

Query: 153 HD---------RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
            +           K H   +  +                      ++ + A    E  +W
Sbjct: 70  QNAAIEIASDYTKKKHVLRVKLAN-------------------GALFLLQAHDDTEMSQW 110

Query: 204 IKCLSLH 210
           +  L   
Sbjct: 111 VTSLKAQ 117

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 25/185 (13%)

Query: 9   KEGWLWKQGGRYKSWKRRWFILND--KCLYYFEYTTDKSACLIENSSGRYKSWKRRWFIL 66
           KEGWL K+G   K+W+ R+F+L +    + Y E   D        ++          F +
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNN----------FSV 57

Query: 67  NDKCLYYFEYTTDKPFKIP-EDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDK 125
               L   E      F I        +  TF     E          + W      + D 
Sbjct: 58  AQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPE--------EREEWTTAIQTVADG 109

Query: 126 CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKV--V 183
                    D       P +N    E+          +  + FE++K     + GKV  V
Sbjct: 110 LKKQAAAEMDFRSGS--PSDNSGAEEMEVSLAKPKHRVTMNEFEYLKLLGKGTFGKVILV 167

Query: 184 EGKHT 188
           + K T
Sbjct: 168 KEKAT 172

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 28/120 (23%)

Query: 99  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---------RGIIPLENIQV 149
             ++G L+      + W R +  + D  L + +                RGI+ L    V
Sbjct: 12  HKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71

Query: 150 REVHD--RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
            +       K   F L                    +        +    EE  EW + +
Sbjct: 72  VKAPQGKNQKSFVFILEPK-----------------QQGDPPVEFATDKVEELFEWFQSI 114

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 34/122 (27%)

Query: 102 EGWLWK-----QGGRY---KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQ----- 148
           EG+L +        +    +SW   + ++N++ + +++             E        
Sbjct: 2   EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61

Query: 149 --VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKC 206
                +  + K H F+L  S                       Y   A   EE + WI+ 
Sbjct: 62  ICEVALDYKKKKHVFKLRLSDG-------------------NEYLFQAKDDEEMNTWIQA 102

Query: 207 LS 208
           +S
Sbjct: 103 IS 104

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 28/126 (22%)

Query: 89  GNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP------RGII 142
           G  ++   F       +W      +  + R   L +  L + +   D         +  +
Sbjct: 201 GELILQESFQ------VWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKL 254

Query: 143 PLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
               + V E H    P  F L+                           + A++ E K +
Sbjct: 255 FTSELGVTE-HVEGDPCKFALWVGR---------------TPTSDNKIVLKASSIENKQD 298

Query: 203 WIKCLS 208
           WIK + 
Sbjct: 299 WIKHIR 304

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Length = 185

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 24/111 (21%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
           ++G ++ +    +  + +  +L D      +    + + +  +   +I L+ + VREV  
Sbjct: 73  RDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH 132

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
             K         G   I    TD E         +  + A++ EE++ WI+
Sbjct: 133 EEK---------GLFLISMGMTDPE---------MVEVHASSKEERNSWIQ 165

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRH 156
            +G L       +S   R+  L DK L        +      +  + L + QVR+     
Sbjct: 408 IDGELKITSVERRSKMDRYAFLLDKAL---LICKRRGDSYDLKDFVNLHSFQVRDDSSGD 464

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           +    + ++  F  I+           +     Y +   T E K +W++   
Sbjct: 465 R--DNKKWSHMFLLIE-----------DQGAQGYELFFKTRELKKKWMEQFE 503

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 13/114 (11%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
            EG L  +  + K+ +    +L+D      +        +        P     +R V  
Sbjct: 414 HEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 473

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                  E+ T    F      D E ++ E       + A T  E+  W   ++
Sbjct: 474 LTSAMTREVATDHKAFYVLFTWDQEAQIYE-------LVAQTVSERKNWCALIT 520

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 30/117 (25%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRH 156
            +G L       +S   R+  L DK L        +      +  + L + QVR+     
Sbjct: 236 IDGELKITSVERRSKTDRYAFLLDKAL---LICKRRGDSYDLKASVNLHSFQVRDDSSGE 292

Query: 157 K-----PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           +      H F L                  + +     Y +   T E K +W++   
Sbjct: 293 RDNKKWSHMFLL------------------IEDQGAQGYELFFKTRELKKKWMEQFE 331

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 32/136 (23%)

Query: 86  EDDGNDLMHTFFN---PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---- 138
            D G  LM   F+     K+G    +        +R   L++K + + +   +       
Sbjct: 205 GDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEK 264

Query: 139 ------RGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRM 192
                 +  + +  + + E + +     FE++                     +  VY +
Sbjct: 265 APSYSYKQSLNMTAVGITE-NVKGDTKKFEIW------------------YNAREEVYII 305

Query: 193 SAATAEEKDEWIKCLS 208
            A T E K  W+  + 
Sbjct: 306 QAPTPEIKAAWVNAIR 321

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A Length = 151

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 79  DKPFKIPEDDGNDLMHTFFNPD---KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 135
           +K   + +  G +  H F   +   K G + K+ G     +RR  +L +    Y+    +
Sbjct: 29  EKRLLLEKQAGGNPWHQFVENNLILKMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPVN 86

Query: 136 KEPRGIIPLENIQVREVHDRHKPHCFELFTSG 167
           K  +G IP       E  +      F + T  
Sbjct: 87  KVLKGEIPWSQELRPEAKN---FKTFFVHTPN 115

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 25/102 (24%)

Query: 116 KRRWFILNDKCLYYFEYTTDKEP---------RGIIPLENIQVREVHDRHKPHCFELFTS 166
           + R   L ++ + + E                +  I +  + +        P  F L + 
Sbjct: 229 RERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQG-DPCRFALTSR 287

Query: 167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           G E               G    Y + AA       WIK ++
Sbjct: 288 GPE---------------GGIQRYVLQAADPAISQAWIKHVA 314

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 41/151 (27%)

Query: 82  FKIPEDDGNDLMHTFFNPD-------KEGWLWKQGGRYKSWKRRWFILNDKCLY------ 128
               E   N L   F + D        EG L  +  + K+      +L D  +       
Sbjct: 229 ATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDE 288

Query: 129 -----------YFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTD 177
                           + +    ++ L  + +R V        F +  +           
Sbjct: 289 KLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT--DKRAFFIICTS---------- 336

Query: 178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                  G   +Y + A T+ +K+ W++ L 
Sbjct: 337 -----KLGPPQIYELVALTSSDKNTWMELLE 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	100.0
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.97
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.94
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.93
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.92
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.91
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.91
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.9
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.89
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.89
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.89
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.88
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.88
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.88
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.88
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.88
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.88
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.88
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.87
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.87
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.87
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.87
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.87
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.87
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.87
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.87
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.86
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.86
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.86
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.86
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.86
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.86
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.86
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.86
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.85
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.85
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.85
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.85
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.85
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.84
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.84
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.84
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.84
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.84
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.83
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.83
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.82
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.82
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.8
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.8
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.8
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.8
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.79
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.78
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.77
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.77
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.77
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.74
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.74
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.72
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.72
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.67
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.66
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.63
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.63
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.62
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.61
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.61
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.6
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.6
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.59
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.59
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.58
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.56
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.56
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.56
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.55
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.55
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.55
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.54
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.54
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.53
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.53
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.53
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.52
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.52
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.52
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.51
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.5
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.5
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.49
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.49
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.49
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.49
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.46
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.46
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.46
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.46
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.44
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.44
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.44
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.43
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.43
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.42
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.42
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.41
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.39
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.39
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.38
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.38
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.37
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.37
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.36
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.36
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.35
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.34
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	99.31
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.3
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.29
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.23
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	99.22
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.2
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.2
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.19
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.13
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.09
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.08
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	98.98
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	98.98
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	98.97
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	98.96
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	98.9
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.78
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	98.68
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	98.67
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.66
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.54
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.54
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	98.5
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.38
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.35
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	98.32
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.24
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.11
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.08
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.02
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.02
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	97.93
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	97.86
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.84
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	97.75
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	97.72
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	97.66
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	97.6
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.53
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.5
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	97.41
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.36
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.28
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.23
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.21
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.1
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	97.0
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	96.98
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	96.83
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	96.79
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	96.47
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	95.78
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	95.62
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	95.25
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	94.31
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	90.92
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	82.66

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=100.00  E-value=1.8e-37  Score=256.69  Aligned_cols=187  Identities=24%  Similarity=0.463  Sum_probs=141.8

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEE--eCCEEEEEeecCCccc-ccccCC--------------cce------eccc
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKSA-CLIENS--------------SGR------YKSW   59 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL--~~~~L~Yy~~~~~~~~-~~i~~~--------------~~~------~~~~   59 (210)
                      .|++..++|||+|+|+..++|+||||||  ++++|+||++++++.| ++|...              ++-      +..+
T Consensus       142 ~~~~~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~  221 (386)
T 3lju_X          142 PYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNST  221 (386)
T ss_dssp             HHHSSEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEE
T ss_pred             cccccccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEcccccCCCceEEEEEecCCCc
Confidence            3667889999999999999999999999  8999999999987664 332221              111      2445


Q ss_pred             ceeEEEechh--HHHHHHhhhcCCcc-----ccCCCCCCccccc-cCCcceeeEEeecCcc-CCeeEEEEEEeCCEEEEe
Q psy17820         60 KRRWFILNDK--CLYYFEYTTDKPFK-----IPEDDGNDLMHTF-FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYF  130 (210)
Q Consensus        60 ~~~~~~~~~~--~~~~~~~i~~~~~~-----~~~~~~~~~~~~~-~~~~~~G~L~k~~~~~-~~wk~r~fvL~~~~L~yy  130 (210)
                      +.++++++++  +..|+++|+.+...     .|.....++.+.+ .+++++|||.|+++.. +.|++|||||.++.|+||
T Consensus       222 R~y~l~A~s~~e~~~Wi~aIr~a~~~~lq~~~p~~~~~el~~~l~~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YY  301 (386)
T 3lju_X          222 RNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYF  301 (386)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHGGGSSCCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHhhhhcccccccccCCccchhhcccccccccceeeeEEEECCCCCCCCcccEEEEECCEEEEE
Confidence            6678888775  99999999765322     2444444454444 6788999999999876 899999999999999999


Q ss_pred             ccCCCCCceeEEEeCC----eEEEEecCC---CC--cceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHH
Q psy17820        131 EYTTDKEPRGIIPLEN----IQVREVHDR---HK--PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKD  201 (210)
Q Consensus       131 ~~~~~~~~~~~i~L~~----~~v~~~~~~---~~--~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~  201 (210)
                      +++.+..|.|.|+|..    +.|....+.   +.  +++|+|.++.                    |+|+|+|+|++|++
T Consensus       302 k~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~~--------------------rty~l~A~s~~e~~  361 (386)
T 3lju_X          302 KDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPD--------------------RKFLFACETESDQR  361 (386)
T ss_dssp             SSTTCSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECSS--------------------CEEEEEESSHHHHH
T ss_pred             ecCCCcccceEEEeecceeeeeecccCCccccccCCCcEEEEEeCC--------------------eEEEEEcCCHHHHH
Confidence            9999999999999965    344442222   11  6899998763                    79999999999999


Q ss_pred             HHHHHHhc
Q psy17820        202 EWIKCLSL  209 (210)
Q Consensus       202 ~Wi~al~~  209 (210)
                      +||.||++
T Consensus       362 ~Wi~aL~~  369 (386)
T 3lju_X          362 EWVAAFQK  369 (386)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999985

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.97  E-value=4.1e-31  Score=204.50  Aligned_cols=129  Identities=28%  Similarity=0.678  Sum_probs=112.3

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcccccccCCcceecccceeEEEechhHHHHHHhhhcCCccc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKI   84 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   84 (210)
                      -+|.++|||.|+|+..++|+||||||+++.|.||++..                                          
T Consensus        19 ~~~~~~g~l~~~~~~~~~w~~rw~vl~~~~~~~~~~~~------------------------------------------   56 (228)
T 3tfm_A           19 GSPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQ------------------------------------------   56 (228)
T ss_dssp             --CCEEEEEEECCTTTCCCEEEEEEEETTEEEEESSCC------------------------------------------
T ss_pred             CCCceEEEEeecCcccccceEEEEEEeCCEEEEeccCC------------------------------------------
Confidence            36789999999999999999999999999999999543                                          


Q ss_pred             cCCCCCCccccccCCcceeeEEeecCcc-----CCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcc
Q psy17820         85 PEDDGNDLMHTFFNPDKEGWLWKQGGRY-----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH  159 (210)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~G~L~k~~~~~-----~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~  159 (210)
                                   +++++|||.|+++..     +.|++|||||.++.|+||+++.+..|.|.|+|.++.+.... ..+++
T Consensus        57 -------------~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~-~~k~~  122 (228)
T 3tfm_A           57 -------------EALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDN-TNKEN  122 (228)
T ss_dssp             -------------CSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCSEEEEEEGGGCSEEEEE-TTTTS
T ss_pred             -------------CcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcceeEEEEcCCCEEeccC-CCCCc
Confidence                         246899999998754     89999999999999999999988899999999998764432 35678


Q ss_pred             eEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       160 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|+|.+++                    ++|+|+|+|++|+++|+.||+.
T Consensus       123 ~F~I~t~~--------------------r~~~l~A~s~~e~~~Wv~aL~~  152 (228)
T 3tfm_A          123 GIDIIMAD--------------------RTFHLIAESPEDASQWFSVLSQ  152 (228)
T ss_dssp             EEEEECSS--------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCC--------------------cEEEEEcCCHHHHHHHHHHHHH
Confidence            99998763                    7999999999999999999975

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.94  E-value=2.9e-26  Score=187.40  Aligned_cols=161  Identities=60%  Similarity=1.111  Sum_probs=142.0

Q ss_pred             ccCCcceecccceeEEEechh-----------HHHHHHhhhcCCccccCCCCCCccccccCCcceeeEEeecCccCCeeE
Q psy17820         49 IENSSGRYKSWKRRWFILNDK-----------CLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKR  117 (210)
Q Consensus        49 i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~~~~~wk~  117 (210)
                      +++++++..++...|+.++++           ++.+|+.|...++.++..+..++.....+|.++|||.|+++..+.|++
T Consensus       152 lhn~~~k~kmt~~~fi~n~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~~~l~~~f~~~~k~G~L~K~g~~~k~Wkk  231 (347)
T 2r09_A          152 LHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKR  231 (347)
T ss_dssp             HHCTTCCSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCSCCGGGCCCCCCEEEEEEEECSSSCCEEE
T ss_pred             hhcccccccCCHHHHHHHhhcccCCCCCCHHHHHHHHHhhccCcccccccccccccccccccccCCeeEecCCCccccee
Confidence            467888888888888877653           889999999999998887776666667789999999999988899999


Q ss_pred             EEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCC--ceeeeeeecCCCCceeeecceEEEEEcC
Q psy17820        118 RWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMSAA  195 (210)
Q Consensus       118 r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~--~~~~~~~~~~~~~~~~~~~~r~~~l~a~  195 (210)
                      |||||.++.|+||+++.+..|.|.|+|.+++|..+++.++++||+|.+++  ...+..|+.+..|.++.+..|+|+|+|+
T Consensus       232 RwFVL~~~~L~Yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~  311 (347)
T 2r09_A          232 RWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAP  311 (347)
T ss_dssp             EEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECS
T ss_pred             EEEEEcCCEEEEEcCCCccCCcEEEEcCCeEEEEccCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECC
Confidence            99999999999999998889999999999998888777889999999874  2456788888888888888899999999


Q ss_pred             CHHHHHHHHHHHhc
Q psy17820        196 TAEEKDEWIKCLSL  209 (210)
Q Consensus       196 s~~e~~~Wi~al~~  209 (210)
                      |++|+++||.+|+.
T Consensus       312 s~ee~~~Wi~aI~~  325 (347)
T 2r09_A          312 SPEEKEEWMKSIKA  325 (347)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999985

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.93  E-value=9.9e-25  Score=153.66  Aligned_cols=114  Identities=68%  Similarity=1.325  Sum_probs=102.9

Q ss_pred             ccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCc--eeeee
Q psy17820         96 FFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKA  173 (210)
Q Consensus        96 ~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~--~~~~~  173 (210)
                      +.+++++|||.|+++..+.|++|||||.++.|+||+++.+..|.|.|+|.++.+..+.+.+++++|+|.+++.  +.+..
T Consensus         2 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~   81 (127)
T 1fgy_A            2 FFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKA   81 (127)
T ss_dssp             CSSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCC
T ss_pred             CCCCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCCCCCcceEEECCceEEEEccCCCCCceEEEecCCcccccccc
Confidence            3578899999999988899999999999999999999988899999999999988887778899999998753  35677


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |+...++.++.+..++|+|+|+|++|+++||.||+.
T Consensus        82 ~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~  117 (127)
T 1fgy_A           82 CKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA  117 (127)
T ss_dssp             EEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccccCCcceecCCceEEEEECCCHHHHHHHHHHHHH
Confidence            888888888888899999999999999999999985

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.92  E-value=1.1e-24  Score=149.04  Aligned_cols=99  Identities=25%  Similarity=0.473  Sum_probs=86.3

Q ss_pred             CcceeeEEee-cCccC-CeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC--CCcceEEEEeCCceeeeee
Q psy17820         99 PDKEGWLWKQ-GGRYK-SWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        99 ~~~~G~L~k~-~~~~~-~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~--~~~~~f~i~~~~~~~~~~~  174 (210)
                      ++++|||.|+ ++..+ +|++|||||++.+|+||+++++..+.|.|+|.++.|..+++.  .++++|+|.++++      
T Consensus        12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~------   85 (125)
T 1dyn_A           12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQ------   85 (125)
T ss_dssp             EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTS------
T ss_pred             eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEECCCC------
Confidence            6899999995 56676 599999999999999999999999999999999999887664  7889999998864      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                            ..+..++++|.|+|+|.+|+++|+.||.+
T Consensus        86 ------r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r  114 (125)
T 1dyn_A           86 ------RNVYKDYRQLELACETQEEVDSWKASFLR  114 (125)
T ss_dssp             ------SCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred             ------ccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence                  23444568999999999999999999943

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=1.7e-24  Score=149.75  Aligned_cols=92  Identities=21%  Similarity=0.498  Sum_probs=80.6

Q ss_pred             CCcceeeEEeecC-ccCCeeEEEEEEeCCEEEEec----cCCCCCceeEEEeCCeEEEEecC----CCCcceEEEEeCCc
Q psy17820         98 NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFE----YTTDKEPRGIIPLENIQVREVHD----RHKPHCFELFTSGF  168 (210)
Q Consensus        98 ~~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~----~~~~~~~~~~i~L~~~~v~~~~~----~~~~~~f~i~~~~~  168 (210)
                      ++.++|||.|+|+ ..+.||||||||+++.|+||+    ++.+.+|.|.|+|.+++|..+++    .+++++|+++.++ 
T Consensus         7 n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~~-   85 (126)
T 1wi1_A            7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEG-   85 (126)
T ss_dssp             CEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSS-
T ss_pred             CCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEEecCC-
Confidence            4578999999987 568999999999999999999    88888999999999999886432    2578999988764 


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                         ++|+|+|+|++||+.||.||.+
T Consensus        86 -------------------~ty~~~Adseee~~~WikAi~~  107 (126)
T 1wi1_A           86 -------------------DTVIFASDDEQDRILWVQAMYR  107 (126)
T ss_dssp             -------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------------ceEEEEcCCHHHHHHHHHHHHH
Confidence                               4799999999999999999975

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=7.4e-24  Score=149.71  Aligned_cols=111  Identities=22%  Similarity=0.412  Sum_probs=86.2

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeee---e
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA---C  174 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~---~  174 (210)
                      .++++|||.|++ ..+.|++|||||+++.|+||+++.+..|.|.|+|.+++|...+...+++||+|.++....+..   +
T Consensus         7 ~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~   85 (130)
T 1v88_A            7 GIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGP   85 (130)
T ss_dssp             SCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCT
T ss_pred             ceEEEeEEEEeC-CCCCceEEEEEEECCEEEEECCCCCCCceEEEEcCCCEEEECCCCCCCeEEEEEcCCccccccccCC
Confidence            457999999988 788999999999999999999999999999999999998655555667999998765322111   1


Q ss_pred             ecCCCCceeee-cceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEG-KHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~-~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.+..|.++.+ +.+.|+|+|+|++|+++||.||+.
T Consensus        86 ~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~  121 (130)
T 1v88_A           86 KGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL  121 (130)
T ss_dssp             TSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHH
T ss_pred             cccccccccccCCceEEEEECCCHHHHHHHHHHHHH
Confidence            11222333322 235689999999999999999985

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.90  E-value=9.2e-23  Score=139.96  Aligned_cols=94  Identities=27%  Similarity=0.576  Sum_probs=83.5

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+.++|||.|+++..+.|++|||||.++.|+||+++.+..|.+.|+|.++.+....+. .++++|+|.+++.       
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~-------   78 (109)
T 1wgq_A            6 SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGM-------   78 (109)
T ss_dssp             CSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTE-------
T ss_pred             CCCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCcCccCceEECCCCEEEECCCCCCCCcEEEEEeCCC-------
Confidence            45679999999998889999999999999999999999899999999999988776543 4679999987643       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|++.||.+|+.
T Consensus        79 ------------~~~~~~a~s~~e~~~Wi~al~~  100 (109)
T 1wgq_A           79 ------------VFYVFKADDAHSTQRWIDAFQE  100 (109)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------eEEEEECCCHHHHHHHHHHHHH
Confidence                        7899999999999999999985

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.89  E-value=2.1e-22  Score=141.57  Aligned_cols=94  Identities=20%  Similarity=0.390  Sum_probs=77.2

Q ss_pred             cCCcceeeEEeec-CccCCeeEEEEEEe---CCEEEEecc----CCCCCceeEEEeCC-eEEEEec---CCCCcceEEEE
Q psy17820         97 FNPDKEGWLWKQG-GRYKSWKRRWFILN---DKCLYYFEY----TTDKEPRGIIPLEN-IQVREVH---DRHKPHCFELF  164 (210)
Q Consensus        97 ~~~~~~G~L~k~~-~~~~~wk~r~fvL~---~~~L~yy~~----~~~~~~~~~i~L~~-~~v~~~~---~~~~~~~f~i~  164 (210)
                      .+..++|||.|++ +..+.|++|||||.   +..|+||++    +.+..|.|.|+|.. ..|....   ....++||.|.
T Consensus        13 ~~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~   92 (126)
T 1v5p_A           13 RQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN   92 (126)
T ss_dssp             CCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE
T ss_pred             CCCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEE
Confidence            5566899999998 57889999999999   667888898    56688999999998 4665544   23556899776


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      ++                    .|+|+|+|+|++|+++||.||+.+
T Consensus        93 t~--------------------~r~y~l~A~s~~e~~~Wi~al~~a  118 (126)
T 1v5p_A           93 AL--------------------SQRYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             CS--------------------SCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CC--------------------CEEEEEECCCHHHHHHHHHHHHHH
Confidence            54                    479999999999999999999864

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=2e-22  Score=139.16  Aligned_cols=93  Identities=25%  Similarity=0.540  Sum_probs=82.6

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEE--ecCCCCcceEEEEeCCceeeeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE--VHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~--~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      .+.++|||.|+++..+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+..  .+..+++++|.|.++++       
T Consensus         4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~-------   76 (113)
T 1pls_A            4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ-------   76 (113)
T ss_dssp             CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTT-------
T ss_pred             CCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCC-------
Confidence            467999999999888999999999999999999999888999999999988764  23346788999987753       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+++|+.+|+.
T Consensus        77 ------------r~~~l~a~s~~e~~~Wi~ai~~   98 (113)
T 1pls_A           77 ------------QDHFFQAAFLEERDAWVRDINK   98 (113)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------CEEEEECCCHHHHHHHHHHHHH
Confidence                        7999999999999999999985

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=1.1e-22  Score=146.55  Aligned_cols=92  Identities=13%  Similarity=0.261  Sum_probs=80.2

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC--CCCcceEEEEeCCceeeeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      .++++|||.|+++..+.|++|||+|+++.|+||+++.+..+.+.|+|.++++.....  ....++|.|.+++        
T Consensus        17 pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~--------   88 (149)
T 1x1f_A           17 PLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK--------   88 (149)
T ss_dssp             CEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSS--------
T ss_pred             CccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEEcCC--------
Confidence            367899999999988999999999999999999999999999999999987653322  2346899998764        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+++||.||+.
T Consensus        89 ------------r~~~f~A~s~ee~~eWi~aI~~  110 (149)
T 1x1f_A           89 ------------EEVQLKTENTESGEEWRGFILT  110 (149)
T ss_dssp             ------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                        6899999999999999999985

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.88  E-value=3.7e-22  Score=140.38  Aligned_cols=93  Identities=37%  Similarity=0.569  Sum_probs=82.6

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEE-EecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVR-EVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~-~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+.++|||.|+++..+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+. ..+..+++++|.|.+++        
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~--------   87 (126)
T 1fao_A           16 SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPF--------   87 (126)
T ss_dssp             CTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEETT--------
T ss_pred             CCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEEeCC--------
Confidence            567899999999988889999999999999999999988899999999998744 44445778999998763        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+++|+.+|+.
T Consensus        88 ------------r~~~l~a~s~~e~~~Wi~al~~  109 (126)
T 1fao_A           88 ------------RTFYLCAKTGVEADEWIKILRW  109 (126)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------cEEEEECCCHHHHHHHHHHHHH
Confidence                        7999999999999999999985

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.88  E-value=4.5e-22  Score=136.35  Aligned_cols=94  Identities=36%  Similarity=0.573  Sum_probs=81.7

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCC--EEEEeccCCCCCceeEEEeCCeEEEEecCC------CCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDR------HKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~--~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~------~~~~~f~i~~~~~  168 (210)
                      .+++++|||.|+++..+.|++|||+|.++  .|+||+++.+..|.+.|+|.++.+..+...      +++++|.|.+++.
T Consensus         5 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~   84 (109)
T 2i5f_A            5 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   84 (109)
T ss_dssp             CCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTC
T ss_pred             CceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCC
Confidence            45679999999998888999999999986  999999998889999999999887765432      3679999987753


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                         ++|+|+|+|++|+++|+.||+.
T Consensus        85 -------------------~~~~l~a~s~~e~~~Wi~ai~~  106 (109)
T 2i5f_A           85 -------------------VHYFLQAATPKERTEWIKAIQM  106 (109)
T ss_dssp             -------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                               6899999999999999999985

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=2.6e-22  Score=137.88  Aligned_cols=92  Identities=20%  Similarity=0.255  Sum_probs=78.9

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCC---EEEEeccCCCCCceeEEEeCCeEEEEec---CCCCcceEEEEeCCcee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKEPRGIIPLENIQVREVH---DRHKPHCFELFTSGFEF  170 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~---~L~yy~~~~~~~~~~~i~L~~~~v~~~~---~~~~~~~f~i~~~~~~~  170 (210)
                      .+..++|||.|++. .+.|++|||||+++   .|+||+++++..|.+.|+|.+++|...+   ..+++++|+|..+    
T Consensus         6 ~~~~~~G~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~----   80 (112)
T 2coc_A            6 SGSLLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWA----   80 (112)
T ss_dssp             SSSSSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEET----
T ss_pred             CCceEEEEEEecCC-CCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEecC----
Confidence            34568899999764 78999999999985   7999999999999999999999998532   2357899999855    


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                      .++|+|+|+|++++++||.+|+.
T Consensus        81 ----------------~~~y~f~A~s~e~~~~Wl~al~~  103 (112)
T 2coc_A           81 ----------------KQSWYLSASSAELQQQWLETLST  103 (112)
T ss_dssp             ----------------TEEEEEEESSHHHHHHHHHHHHH
T ss_pred             ----------------CeEEEEEcCCHHHHHHHHHHHHH
Confidence                            37999999999999999999985

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.88  E-value=2.9e-22  Score=133.86  Aligned_cols=90  Identities=21%  Similarity=0.475  Sum_probs=77.6

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeec
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      +.++|||.|+++..++|++|||||.++.|+||+++.+  ..|.+.|+|.++.+...  ...+++|.|.+++         
T Consensus         1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~--~~~~~~F~i~~~~---------   69 (94)
T 2rsg_A            1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPH--DFDECRFDISVND---------   69 (94)
T ss_dssp             CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEEC--SSCSSEEEEEETT---------
T ss_pred             CCEEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccccccceeeEecceeeeecC--cccceeEEEEeCC---------
Confidence            3589999999998999999999999999999988765  45889999999876543  3457899988764         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                 ++|+|+|+|++|+++||.||+++
T Consensus        70 -----------r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           70 -----------SVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             -----------EEEEEECCSSCCTHHHHHHHHHH
T ss_pred             -----------eEEEEECCCHHHHHHHHHHHHhh
Confidence                       79999999999999999999864

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.88  E-value=8e-22  Score=137.18  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=81.4

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC---CCCceeEEEeCCeEEEEecCC-C--------CcceEEEEeC
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT---DKEPRGIIPLENIQVREVHDR-H--------KPHCFELFTS  166 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~---~~~~~~~i~L~~~~v~~~~~~-~--------~~~~f~i~~~  166 (210)
                      ++++|||.|++...++|++|||||+++.|+||++++   +..|.+.|+|.+|+|....+. .        .++.|.|...
T Consensus         6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~   85 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAK   85 (120)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEES
T ss_pred             ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeC
Confidence            789999999999889999999999999999999875   566999999999999886543 2        6778888766


Q ss_pred             CceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..+             +....+.|+|+|+|.+|+++||.+|+.
T Consensus        86 ~~~-------------~~~~~~~y~f~A~s~~e~~~Wv~aI~~  115 (120)
T 4a6h_A           86 QNG-------------IIRRGHNWVFKADSYESMMSWFDNLKI  115 (120)
T ss_dssp             SSS-------------SSCTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCC-------------cccCceEEEEEcCCHHHHHHHHHHHHH
Confidence            421             112346999999999999999999985

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.88  E-value=5.3e-22  Score=136.91  Aligned_cols=90  Identities=27%  Similarity=0.469  Sum_probs=76.4

Q ss_pred             ceeeEEeecC----ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEE---EecCCCCcceEEEEeCCceeeee
Q psy17820        101 KEGWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVR---EVHDRHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus       101 ~~G~L~k~~~----~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~---~~~~~~~~~~f~i~~~~~~~~~~  173 (210)
                      ++|||.++++    ..+.|++|||||+++.|+||+++.+..|.+.|+|.+..+.   ..+..+++++|+|.+++.     
T Consensus         2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~-----   76 (112)
T 3cxb_B            2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDR-----   76 (112)
T ss_dssp             EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTS-----
T ss_pred             ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCC-----
Confidence            7999997753    4679999999999999999999988899999999976443   334557889999987653     


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ++|+|+|+|++||++||.+|++
T Consensus        77 --------------~~y~f~A~s~ee~~~Wi~ai~~   98 (112)
T 3cxb_B           77 --------------PCLELSAESEAEMAEWMQHLCQ   98 (112)
T ss_dssp             --------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             --------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                          6899999999999999999975

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.88  E-value=5.3e-22  Score=140.15  Aligned_cols=94  Identities=36%  Similarity=0.573  Sum_probs=82.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCC--EEEEeccCCCCCceeEEEeCCeEEEEecCC------CCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDR------HKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~--~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~------~~~~~f~i~~~~~  168 (210)
                      ..++++|||.|+++..+.|++|||||.++  .|+||+++.+..|.+.|+|.++.+..+...      +++++|.|.+++.
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~   95 (129)
T 1x05_A           16 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   95 (129)
T ss_dssp             SEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTC
T ss_pred             CCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCC
Confidence            56789999999998888999999999976  899999998889999999999988765433      3689999987743


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                         ++|+|+|+|++|+++||.||+.
T Consensus        96 -------------------~~~~l~a~s~~e~~~Wi~al~~  117 (129)
T 1x05_A           96 -------------------VHYFLQAATPKERTEWIKAIQM  117 (129)
T ss_dssp             -------------------CCCEEECSSHHHHHHHHHHHHH
T ss_pred             -------------------CEEEEECCCHHHHHHHHHHHHH
Confidence                               6899999999999999999985

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.87  E-value=1.7e-22  Score=141.80  Aligned_cols=96  Identities=19%  Similarity=0.275  Sum_probs=79.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC---------CCceeEEEeCCeEEEEecC--CCCcceEEEEe
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD---------KEPRGIIPLENIQVREVHD--RHKPHCFELFT  165 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~---------~~~~~~i~L~~~~v~~~~~--~~~~~~f~i~~  165 (210)
                      ..++++|||.|+++..+.|++|||||+++.|+||+++..         ..+.|.|+|.++++..+++  .+++++|+|.+
T Consensus        10 ~~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~   89 (124)
T 2w2x_D           10 DEHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEP   89 (124)
T ss_dssp             ---CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEE
T ss_pred             hhcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEEC
Confidence            567899999999988899999999999999999997421         3458999999999888765  46789999987


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +..                 +.++|+|+|+|++|+++||.||++
T Consensus        90 ~~~-----------------~~~~~~~~A~s~ee~~~Wi~ai~~  116 (124)
T 2w2x_D           90 KQQ-----------------GDPPVEFATDKVEELFEWFQSIRE  116 (124)
T ss_dssp             CC-------------------CCCEEEEECCCHHHHHHHHHHHH
T ss_pred             CCC-----------------CCceEEEEECCHHHHHHHHHHHHH
Confidence            642                 136899999999999999999985

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.87  E-value=1e-21  Score=136.37  Aligned_cols=101  Identities=29%  Similarity=0.597  Sum_probs=84.4

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~  173 (210)
                      ..++++|||.|+++..+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+..+.+   ..++++|+|.++...    
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~----   81 (118)
T 1v89_A            6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWD----   81 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCS----
T ss_pred             CCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCccc----
Confidence            4567999999999888899999999999999999999888999999999998876542   356889999875210    


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                              .+.++.++|+|+|+|++|+++|+.+|+.
T Consensus        82 --------~~~~~~~~~~l~a~s~~e~~~Wi~al~~  109 (118)
T 1v89_A           82 --------QNRMGQDSYVLMASSQAEMEEWVKFLRR  109 (118)
T ss_dssp             --------SCCSSCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             --------cccCCCcEEEEECCCHHHHHHHHHHHHH
Confidence                    0112347999999999999999999985

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=3.4e-21  Score=133.57  Aligned_cols=95  Identities=34%  Similarity=0.725  Sum_probs=82.2

Q ss_pred             cCCcceeeEEeec-CccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeee
Q psy17820         97 FNPDKEGWLWKQG-GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIK  172 (210)
Q Consensus        97 ~~~~~~G~L~k~~-~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~  172 (210)
                      ..+.++|||.|++ ...+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+..+..   ..++++|.|..+.     
T Consensus         9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~-----   83 (117)
T 2d9y_A            9 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG-----   83 (117)
T ss_dssp             CCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSS-----
T ss_pred             CCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCC-----
Confidence            3467999999998 467899999999999999999999899999999999998876532   3678899997554     


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                    .++|+|+|+|++|+++|+.||+.+
T Consensus        84 --------------~r~~~l~a~s~~e~~~Wi~al~~~  107 (117)
T 2d9y_A           84 --------------VRTYFFSAESPEEQEAWIQAMGEA  107 (117)
T ss_dssp             --------------SCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             --------------CcEEEEEcCCHHHHHHHHHHHHHH
Confidence                          379999999999999999999864

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.87  E-value=1.8e-21  Score=132.08  Aligned_cols=89  Identities=27%  Similarity=0.564  Sum_probs=77.0

Q ss_pred             ceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCC
Q psy17820        101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDS  178 (210)
Q Consensus       101 ~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~  178 (210)
                      ++|||.|+++..+.|++|||||.++.|+||+++.+  ..|.|.|+|.++.+...+.  .+++|.|.+++           
T Consensus         1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~--~~~~F~i~~~~-----------   67 (103)
T 3rcp_A            1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSA--DNTRMELIIPG-----------   67 (103)
T ss_dssp             CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC---CCCSCEEEGGGCEEECCTT--CSSEEEEEETT-----------
T ss_pred             CceEEEEccCCCCCeeceEEEEECCEEEEEecCCcccCCcccEEEeeeeEEEEcCC--CCceEEEEeCC-----------
Confidence            48999999988899999999999999999999875  3589999999888765433  47899998764           


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                              .++|+|+|+|++|+++|+.||+.+
T Consensus        68 --------~r~~~l~a~s~~e~~~Wi~al~~a   91 (103)
T 3rcp_A           68 --------EQHFYMKAVNAAERQRWLVALGSS   91 (103)
T ss_dssp             --------TEEEEEECSSHHHHHHHHHHHHTT
T ss_pred             --------CCEEEEECCCHHHHHHHHHHHHHH
Confidence                    389999999999999999999864

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.87  E-value=2.8e-21  Score=134.04  Aligned_cols=94  Identities=27%  Similarity=0.558  Sum_probs=80.7

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEe--CCEEEEeccCCCCCceeEEEeCCeEEEEecC--------CCCcceEEEEeC
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKEPRGIIPLENIQVREVHD--------RHKPHCFELFTS  166 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~--~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~--------~~~~~~f~i~~~  166 (210)
                      ..+.++|||.|+++..+.|++|||||.  ++.|+||+++.+..|.|.|+|.++.+....+        ..++++|.|.++
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~   85 (117)
T 1v5u_A            6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT   85 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES
T ss_pred             CCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEECC
Confidence            456799999999988899999999999  8899999999888999999999987655322        234589998765


Q ss_pred             CceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                          .++|+|+|+|++|+++||.||+.+
T Consensus        86 --------------------~r~~~l~a~s~~e~~~Wi~al~~~  109 (117)
T 1v5u_A           86 --------------------RRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             --------------------SCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             --------------------CceEEEECCCHHHHHHHHHHHHHH
Confidence                                379999999999999999999864

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=136.69  Aligned_cols=92  Identities=28%  Similarity=0.484  Sum_probs=80.3

Q ss_pred             cCCcceeeEEeecC--ccCCeeEEEEEEeCC--EEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeee
Q psy17820         97 FNPDKEGWLWKQGG--RYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIK  172 (210)
Q Consensus        97 ~~~~~~G~L~k~~~--~~~~wk~r~fvL~~~--~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~  172 (210)
                      ..+.++|||.|+++  ..+.|++|||||.++  .|+||+++.+..|.|.|+|.++.+... ....+++|.|.++.     
T Consensus         6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~-~~~~~~~F~i~~~~-----   79 (119)
T 2dhk_A            6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCK-ADAEEGIFEIKTPS-----   79 (119)
T ss_dssp             SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEEC-TTGGGCEEEEECSS-----
T ss_pred             CCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEec-CCCCCCEEEEEeCC-----
Confidence            45679999999986  678999999999999  999999998889999999999887653 33457899988763     


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     |+|+|+|+|++|+++||.||+.
T Consensus        80 ---------------r~~~l~a~s~~e~~~Wi~al~~  101 (119)
T 2dhk_A           80 ---------------RVITLKAATKQAMLYWLQQLQM  101 (119)
T ss_dssp             ---------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------------cEEEEECCCHHHHHHHHHHHHH
Confidence                           7999999999999999999985

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.87  E-value=6.5e-22  Score=135.14  Aligned_cols=93  Identities=27%  Similarity=0.633  Sum_probs=80.8

Q ss_pred             CCcceeeEEeecCcc----CCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec----CCCCcceEEEEeCCce
Q psy17820         98 NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRHKPHCFELFTSGFE  169 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~----~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~----~~~~~~~f~i~~~~~~  169 (210)
                      +++++|||.|+++..    +.|++|||+|.++.|+||+++.+..|.+.|+|.++.+...+    ..+++++|.|.+++. 
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~-   80 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDR-   80 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSS-
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCC-
Confidence            467899999998532    79999999999999999999998899999999999987653    235679999987742 


Q ss_pred             eeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        170 FIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                        ++|+|+|+|++|+++|+.||+.
T Consensus        81 ------------------r~~~l~a~s~~e~~~Wi~ai~~  102 (108)
T 1u5d_A           81 ------------------RTYEFTATSPAEARDWVDQISF  102 (108)
T ss_dssp             ------------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------------cEEEEECCCHHHHHHHHHHHHH
Confidence                              7999999999999999999985

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.87  E-value=2.9e-21  Score=136.10  Aligned_cols=94  Identities=28%  Similarity=0.603  Sum_probs=82.5

Q ss_pred             cCCcceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeee
Q psy17820         97 FNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIK  172 (210)
Q Consensus        97 ~~~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~  172 (210)
                      ..++++|||.|+++ ..+.|++|||||.++.|+||+++.+..|.+.|+|.++.+..+..   ..++++|.|.+++.    
T Consensus        19 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~----   94 (128)
T 2dkp_A           19 APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNM----   94 (128)
T ss_dssp             SCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSS----
T ss_pred             CCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCC----
Confidence            45679999999987 67899999999999999999999999999999999998876542   36789999987642    


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     ++|+|+|+|++|+++|+.+|+.
T Consensus        95 ---------------r~~~l~a~s~~e~~~Wi~al~~  116 (128)
T 2dkp_A           95 ---------------RTYYFCTDTGKEMELWMKAMLD  116 (128)
T ss_dssp             ---------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                           7899999999999999999974

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.86  E-value=1.3e-21  Score=141.74  Aligned_cols=94  Identities=30%  Similarity=0.485  Sum_probs=82.9

Q ss_pred             cCCcceeeEEeec------CccCCeeEEEEEEeCC-----EEEEeccCC-CCCceeEEEeCCeEEEEecCCCCcceEEEE
Q psy17820         97 FNPDKEGWLWKQG------GRYKSWKRRWFILNDK-----CLYYFEYTT-DKEPRGIIPLENIQVREVHDRHKPHCFELF  164 (210)
Q Consensus        97 ~~~~~~G~L~k~~------~~~~~wk~r~fvL~~~-----~L~yy~~~~-~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~  164 (210)
                      ..+.++|||.|++      ...+.|++|||||.++     .|.||+++. +..|.+.|+|.++.+....+..++++|.|.
T Consensus        16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~~~~~~~~F~i~   95 (150)
T 1wg7_A           16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELK   95 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCCSSCTTEEEEE
T ss_pred             CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecCCCCCceEEEEE
Confidence            6678999999998      3567999999999997     999999987 778999999999988776666788999998


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++.                   ++|+|+|+|++|+++||.||+.
T Consensus        96 ~~~~-------------------r~~~l~A~s~~e~~~Wi~al~~  121 (150)
T 1wg7_A           96 MQDK-------------------SSYLLAADSEVEMEEWITILNK  121 (150)
T ss_dssp             CSSS-------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             eCCC-------------------cEEEEEeCCHHHHHHHHHHHHH
Confidence            8742                   7999999999999999999985

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.86  E-value=2e-21  Score=133.84  Aligned_cols=93  Identities=23%  Similarity=0.393  Sum_probs=77.5

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEE-eCCEEEEeccCCCCCceeEEEeCCeEEE-----E-----ecCC-CCcceEEEEe
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPLENIQVR-----E-----VHDR-HKPHCFELFT  165 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL-~~~~L~yy~~~~~~~~~~~i~L~~~~v~-----~-----~~~~-~~~~~f~i~~  165 (210)
                      .+.++|||.|+++..+.|++||||| .++.|+||+++.+..+.+.|+|....+.     .     .++. .++++|.|.+
T Consensus         4 ~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~   83 (112)
T 3aj4_A            4 AFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVC   83 (112)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEE
T ss_pred             ceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcEEEEEe
Confidence            4679999999998889999999999 8999999999988899999999864432     1     1122 2367999986


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++                   .++|+|+|+|++|+++||.||+.
T Consensus        84 ~~-------------------~r~~~l~a~s~~e~~~Wi~al~~  108 (112)
T 3aj4_A           84 RD-------------------GKTISLCAESTDDCLAWKFTLQD  108 (112)
T ss_dssp             TT-------------------SCEEEEECSSHHHHHHHHHHHHH
T ss_pred             cC-------------------CcEEEEEeCCHHHHHHHHHHHHH
Confidence            64                   37999999999999999999985

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.86  E-value=1.6e-21  Score=133.42  Aligned_cols=92  Identities=18%  Similarity=0.333  Sum_probs=77.7

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+.++|||.|+  ..+.|++|||||.++.|+||+++.+ ..+.+.|.|.++.|...++.+++++|.|.+++.       
T Consensus         6 ~~~~~~G~L~K~--~~k~Wk~RwfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~F~i~~~~~-------   76 (107)
T 2cof_A            6 SGLETSSYLNVL--VNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGE-------   76 (107)
T ss_dssp             CCCTTCCEEEEE--ETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCBTTBSCEEEEEETTE-------
T ss_pred             CCCcEeEEEEEe--cCCCcceEEEEEECCEEEEEeCCcccCCCeeEEeccceEEEECCCCCCCeEEEEEeCCC-------
Confidence            356799999999  6789999999999999999998865 345666777788777666667889999987643       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+++||.||++
T Consensus        77 ------------r~~~l~A~s~~e~~~Wi~al~~   98 (107)
T 2cof_A           77 ------------ELAKLEAKSSEEMGHWLGLLLS   98 (107)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------eEEEEEcCCHHHHHHHHHHHHH
Confidence                        7999999999999999999985

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.86  E-value=3.6e-21  Score=134.64  Aligned_cols=92  Identities=29%  Similarity=0.660  Sum_probs=81.4

Q ss_pred             CcceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeeee
Q psy17820         99 PDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        99 ~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~~  174 (210)
                      +.++|||.|+++ ..+.|++|||+|.++.|+||+++.+..|.+.|+|.++.|....+   .+++++|.|.+++.      
T Consensus        11 ~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~------   84 (123)
T 1upq_A           11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGM------   84 (123)
T ss_dssp             EEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTS------
T ss_pred             ceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECCCC------
Confidence            468999999985 67899999999999999999999999999999999998877643   35789999987642      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   ++|+|+|+|++|+++|+.+|+.
T Consensus        85 -------------r~~~l~a~s~~e~~~Wi~al~~  106 (123)
T 1upq_A           85 -------------RTYVLAADTLEDLRGWLRALGR  106 (123)
T ss_dssp             -------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------eEEEEECCCHHHHHHHHHHHHH
Confidence                         7999999999999999999985

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.7e-21  Score=132.46  Aligned_cols=93  Identities=28%  Similarity=0.523  Sum_probs=81.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCe-EEEEecC-CCCcceEEEEeCCceeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREVHD-RHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~-~v~~~~~-~~~~~~f~i~~~~~~~~~~~  174 (210)
                      ..+.++|||.|+++..+.|++|||||.++.|+||+++.+..|.+.|+|.++ .|...++ ..++++|.|.+++       
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~-------   78 (115)
T 2dn6_A            6 SGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFD-------   78 (115)
T ss_dssp             CSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCCTTCCSEEEEECSS-------
T ss_pred             CCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCCCCCeeEEEEEeCC-------
Confidence            456799999999988899999999999999999999988899999999974 5655544 4567899998763       


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   ++|+|+|+|++|+++|+.+|+.
T Consensus        79 -------------r~~~l~a~s~~e~~~Wi~ai~~  100 (115)
T 2dn6_A           79 -------------KTFEISASDKKKKQEWIQAIHS  100 (115)
T ss_dssp             -------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                         6999999999999999999985

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.86  E-value=7.4e-21  Score=137.47  Aligned_cols=94  Identities=28%  Similarity=0.602  Sum_probs=81.9

Q ss_pred             cCCcceeeEEeecCcc----CCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec----CCCCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRHKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~----~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~----~~~~~~~f~i~~~~~  168 (210)
                      ..+.++|||.|+++..    +.|++|||+|.++.|+||+++.+..|.|.|+|.++++...+    ..+++++|.|.+++.
T Consensus        15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~   94 (148)
T 1u5f_A           15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK   94 (148)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred             CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEECCCC
Confidence            5678999999998543    59999999999999999999988899999999999887654    234579999987642


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                         ++|+|+|+|++|+++||.+|+.
T Consensus        95 -------------------r~~~l~a~s~~e~~~Wi~al~~  116 (148)
T 1u5f_A           95 -------------------RIYQFTAASPKDAEEWVQQLKF  116 (148)
T ss_dssp             -------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------------cEEEEECCCHHHHHHHHHHHHH
Confidence                               7999999999999999999985

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=3.2e-21  Score=134.76  Aligned_cols=93  Identities=34%  Similarity=0.752  Sum_probs=80.7

Q ss_pred             CCcceeeEEeec-CccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeee
Q psy17820         98 NPDKEGWLWKQG-GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        98 ~~~~~G~L~k~~-~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~  173 (210)
                      .+.++|||.|++ ...+.|++|||+|.++.|+||+++.+..|.+.|+|.++.|..+..   .+++++|.|..+.      
T Consensus        21 ~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~------   94 (122)
T 2yry_A           21 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG------   94 (122)
T ss_dssp             CEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSS------
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCC------
Confidence            456899999998 467899999999999999999999999999999999988766532   3578899997654      


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   .++|+|+|+|++|+++||.||+.
T Consensus        95 -------------~r~~~l~a~s~~e~~~Wi~al~~  117 (122)
T 2yry_A           95 -------------VRTYFFSAESPEEQEAWIQAMGE  117 (122)
T ss_dssp             -------------SCEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------CcEEEEEcCCHHHHHHHHHHHHH
Confidence                         37999999999999999999985

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.86  E-value=4e-21  Score=135.76  Aligned_cols=93  Identities=17%  Similarity=0.390  Sum_probs=77.4

Q ss_pred             CCcceeeEEee----cC-c-cCCeeEEEEEEeCCEEEEeccCC-----------CCCceeEEEeCCeEEEEecC-CCCcc
Q psy17820         98 NPDKEGWLWKQ----GG-R-YKSWKRRWFILNDKCLYYFEYTT-----------DKEPRGIIPLENIQVREVHD-RHKPH  159 (210)
Q Consensus        98 ~~~~~G~L~k~----~~-~-~~~wk~r~fvL~~~~L~yy~~~~-----------~~~~~~~i~L~~~~v~~~~~-~~~~~  159 (210)
                      .+.++|||.|+    ++ . .++|++|||||.++.|+||+++.           +..|.+.|+|.++.+....+ .++++
T Consensus        11 ~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~   90 (129)
T 2p0d_A           11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRN   90 (129)
T ss_dssp             SEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCSSSS
T ss_pred             ceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCCCCc
Confidence            56799999985    33 2 37999999999999999999983           55899999999998876543 46789


Q ss_pred             eEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       160 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|+|.++++                   +.|+|+|+|++|+++||.||+.
T Consensus        91 ~F~l~t~~~-------------------~~yl~qA~s~~e~~~Wi~aI~~  121 (129)
T 2p0d_A           91 VLHIRTIPG-------------------HEFLLQSDHETELRAWHRALRT  121 (129)
T ss_dssp             EEEEECTTS-------------------CEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCC-------------------CEEEEECCCHHHHHHHHHHHHH
Confidence            999987753                   6899999999999999999985

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=6.1e-21  Score=132.06  Aligned_cols=90  Identities=26%  Similarity=0.518  Sum_probs=77.6

Q ss_pred             cCCcceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+.++|||.|+++ ..+.|++|||+|.++.|+||+++.+..|.+.|+|.++......+   +++|.|.+++        
T Consensus         6 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~---~~~F~i~~~~--------   74 (115)
T 2cod_A            6 SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG---DNKFEVVTTQ--------   74 (115)
T ss_dssp             SCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEET---TTEEEEEESS--------
T ss_pred             CCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCCcccCCEEECCcceEEEeCC---CCEEEEEeCC--------
Confidence            35679999999987 67899999999999999999999888999999999875333222   5899998653        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+++||.+|+.
T Consensus        75 ------------r~~~l~a~s~~e~~~Wi~~l~~   96 (115)
T 2cod_A           75 ------------RTFVFRVEKEEERNDWISILLN   96 (115)
T ss_dssp             ------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------cEEEEECCCHHHHHHHHHHHHH
Confidence                        7999999999999999999985

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=3.1e-21  Score=136.49  Aligned_cols=93  Identities=23%  Similarity=0.486  Sum_probs=76.7

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEE-eCCEEEEeccCCCCCceeEEEeCC-e-EEEE------ec---CCCCcceEEEEe
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKEPRGIIPLEN-I-QVRE------VH---DRHKPHCFELFT  165 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL-~~~~L~yy~~~~~~~~~~~i~L~~-~-~v~~------~~---~~~~~~~f~i~~  165 (210)
                      .+.++|||.|+++..+.|++||||| +++.|+||+++.+..+.+.|.|.. + .+..      +.   ...++++|+|.+
T Consensus         7 ~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~   86 (130)
T 2d9v_A            7 GLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNL   86 (130)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEE
T ss_pred             ceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcEEEEEe
Confidence            4578999999998889999999999 899999999998888899998763 2 2221      11   224678999987


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++                   |+|+|+|+|++|+++||.||+.
T Consensus        87 ~~~-------------------r~~~l~A~s~~e~~~Wi~al~~  111 (130)
T 2d9v_A           87 REG-------------------SRLHLCAETRDDAIAWKTALME  111 (130)
T ss_dssp             TTS-------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCC-------------------CEEEEEcCCHHHHHHHHHHHHH
Confidence            643                   7999999999999999999985

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2e-21  Score=135.57  Aligned_cols=91  Identities=25%  Similarity=0.537  Sum_probs=77.9

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEe--CCEEEEeccCCCC--CceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDK--EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~--~~~L~yy~~~~~~--~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~  173 (210)
                      .+.++|||.|+++..+.|++|||||.  ++.|+||+++.+.  .|.|.|+|.++.|..  ...++++|.|.++++     
T Consensus         7 ~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~--~~~~~~~F~i~~~~~-----   79 (120)
T 2d9x_A            7 GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISP--SDEDSHTFTVNAASG-----   79 (120)
T ss_dssp             CCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEEC--CSSSSSCEEECCSSS-----
T ss_pred             CCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEe--cCCCCCEEEEEcCCC-----
Confidence            46799999999988889999999998  5799999987763  789999999987654  234578999987642     


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ++|+|+|+|++|+++||.||+.
T Consensus        80 --------------r~~~l~a~s~~e~~~Wi~al~~  101 (120)
T 2d9x_A           80 --------------EQYKLRATDAKERQHWVSRLQI  101 (120)
T ss_dssp             --------------CCEEECCSSHHHHHHHHHHHHH
T ss_pred             --------------CEEEEECCCHHHHHHHHHHHHH
Confidence                          7999999999999999999985

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=2.9e-21  Score=136.33  Aligned_cols=94  Identities=30%  Similarity=0.524  Sum_probs=81.0

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEe--CCEEEEeccC-CCCCceeEEEeCCeEEEEecCC------C---CcceEEEE
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYT-TDKEPRGIIPLENIQVREVHDR------H---KPHCFELF  164 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~--~~~L~yy~~~-~~~~~~~~i~L~~~~v~~~~~~------~---~~~~f~i~  164 (210)
                      ..+.++|||.|+++..+.|++|||||.  +..|+||+++ .+..|.+.|+|.++.+..+.+.      .   ++++|+|.
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~   95 (129)
T 1x1g_A           16 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI   95 (129)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred             CCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEE
Confidence            567899999999988899999999999  4799999987 6788999999999887765443      1   57899998


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++.                   ++|+|+|+|++|+++||.||+.
T Consensus        96 ~~~~-------------------r~~~l~a~s~~e~~~Wi~al~~  121 (129)
T 1x1g_A           96 TKDD-------------------THYYIQASSKAERAEWIEAIKK  121 (129)
T ss_dssp             CTTC-------------------CCEEECCSSHHHHHHHHHHHHH
T ss_pred             cCCC-------------------CEEEEEcCCHHHHHHHHHHHHH
Confidence            7743                   6899999999999999999985

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=1.3e-20  Score=132.05  Aligned_cols=93  Identities=32%  Similarity=0.583  Sum_probs=80.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEe-cC---CCCcceEEEEeCCceeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV-HD---RHKPHCFELFTSGFEFIK  172 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~-~~---~~~~~~f~i~~~~~~~~~  172 (210)
                      ..+.++|||.|+++..+.|++|||+|.++.|+||+++.+..|.+.|+|.++..... ..   ..++++|.|.+++     
T Consensus        12 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~-----   86 (125)
T 1eaz_A           12 SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-----   86 (125)
T ss_dssp             CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS-----
T ss_pred             CCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEeCC-----
Confidence            45679999999998888999999999999999999998889999999998754332 21   2568999998653     


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     ++|+|+|+|++|+++|+.+|+.
T Consensus        87 ---------------r~~~l~a~s~~e~~~W~~al~~  108 (125)
T 1eaz_A           87 ---------------RTFYVQADSPEEMHSWIKAVSG  108 (125)
T ss_dssp             ---------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------------cEEEEEcCCHHHHHHHHHHHHH
Confidence                           7999999999999999999975

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.84  E-value=6.5e-21  Score=140.57  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=74.3

Q ss_pred             CCcceeeEEeecCc-----cCCeeEEEEEEeCCEEEEecc----CCCCCceeEEEeCCeEEE-Ee---cCC--CCc----
Q psy17820         98 NPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEY----TTDKEPRGIIPLENIQVR-EV---HDR--HKP----  158 (210)
Q Consensus        98 ~~~~~G~L~k~~~~-----~~~wk~r~fvL~~~~L~yy~~----~~~~~~~~~i~L~~~~v~-~~---~~~--~~~----  158 (210)
                      +++++|||.|++..     .+.||+|||||.++.|+||++    +.+..++|.|+|.++.+. .+   ++.  +.+    
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~   81 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence            46799999998732     468999999999999999998    456789999999997654 33   111  111    


Q ss_pred             -----------------ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 -----------------HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 -----------------~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                       ++|+|++++                    ++|+|+|+|++|+++||.||++
T Consensus        82 ~~~~~~~~~~~i~~~~~~~F~I~t~~--------------------rt~yl~A~s~~E~~eWi~aI~~  129 (169)
T 1btk_A           82 GEESSEMEQISIIERFPYPFQVVYDE--------------------GPLYVFSPTEELRKRWIHQLKN  129 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETT--------------------CCEEEEESCHHHHHHHHHHHHH
T ss_pred             cCcccccccccccccccccEEEEeCC--------------------ceEEEEcCCHHHHHHHHHHHHH
Confidence                             788887764                    6899999999999999999985

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3.4e-20  Score=128.19  Aligned_cols=90  Identities=22%  Similarity=0.436  Sum_probs=75.1

Q ss_pred             cCCcceeeEEeecCcc-CCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~-~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+.++|||.|+++.. +.|++|||||.++.|+||+++.+ .+.+.|.+.++.+..  ..+++++|+|.++.        
T Consensus         8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~-~~~~~i~l~~~~v~~--~~~~~~~F~I~~~~--------   76 (114)
T 2da0_A            8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKP--NAEDKKSFDLISHN--------   76 (114)
T ss_dssp             CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCC-SCCEEEETTTSEEEE--CSSSSSCEEEEETT--------
T ss_pred             CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCC-CCCCEEEeeeeEEEE--CCCCCCEEEEEcCC--------
Confidence            3567999999999766 89999999999999999999755 556677777776653  33467899998663        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+++||.||+.
T Consensus        77 ------------r~~~l~a~s~~e~~~Wi~al~~   98 (114)
T 2da0_A           77 ------------RTYHFQAEDEQDYVAWISVLTN   98 (114)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------cEEEEEcCCHHHHHHHHHHHHH
Confidence                        7999999999999999999975

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.84  E-value=6.2e-21  Score=135.45  Aligned_cols=105  Identities=30%  Similarity=0.571  Sum_probs=80.0

Q ss_pred             CCcceeeEEee--cCccCCeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCeE---EEEecC--CCCcceEEEEeC-
Q psy17820         98 NPDKEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQ---VREVHD--RHKPHCFELFTS-  166 (210)
Q Consensus        98 ~~~~~G~L~k~--~~~~~~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~~---v~~~~~--~~~~~~f~i~~~-  166 (210)
                      .+.++|||.|+  ++..+.|++|||||.++.|+||+++.+   ..|.|.|+|.++.   |...+.  .+++++|+|.+. 
T Consensus         4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~   83 (134)
T 2y7b_A            4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVR   83 (134)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEE
T ss_pred             CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEEecC
Confidence            56799999999  677789999999999999999995443   7899999999987   444433  367899999863 


Q ss_pred             -C-----ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        167 -G-----FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       167 -~-----~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                       .     ...+..|+.       ....++|+|+|+|++|+++||.||+.
T Consensus        84 p~~~~~~~~~~~~~~~-------~~~~r~~~l~A~s~~e~~~Wi~al~~  125 (134)
T 2y7b_A           84 PQREDDRETLVSQCRD-------TLCVTKNWLSADTKEERDLWMQKLNQ  125 (134)
T ss_dssp             ECCTTCCCCSSEEEET-------TEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCcccccccccccccC-------CCceEEEEEECCCHHHHHHHHHHHHH
Confidence             1     111222211       00126899999999999999999985

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.84  E-value=2e-21  Score=136.47  Aligned_cols=97  Identities=25%  Similarity=0.503  Sum_probs=78.2

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeC-CEEEEeccCCCCCceeEEEeCCeEEEEe----cCCCCcceEEEEeCCceee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILND-KCLYYFEYTTDKEPRGIIPLENIQVREV----HDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~-~~L~yy~~~~~~~~~~~i~L~~~~v~~~----~~~~~~~~f~i~~~~~~~~  171 (210)
                      ..+.++|||.|+++..+.|++|||||.+ +.|+||+++.+..+.|.|+|..+.+..+    .+.+++++|+|.++..   
T Consensus         6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~---   82 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQW---   82 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEET---
T ss_pred             CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecccccCCCCEEEEEecCC---
Confidence            4567999999999888999999999995 6999999988877888888877654211    2346789999986410   


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   +..++|+|+|+|++|+++||.||+.
T Consensus        83 -------------~~~~~~~~~a~s~~e~~~Wi~al~~  107 (125)
T 1unq_A           83 -------------TTVIERTFHVETPEEREEWTTAIQT  107 (125)
T ss_dssp             -------------TEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------CCceeEEEEeCCHHHHHHHHHHHHH
Confidence                         1237999999999999999999985

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.84  E-value=2.7e-20  Score=126.79  Aligned_cols=91  Identities=22%  Similarity=0.406  Sum_probs=75.7

Q ss_pred             ceeeEEeec--------CccCCeeEEEEEEeCCEEEEeccCCC----C--CceeEEEeCCeEEEEecC-CCCcceEEEEe
Q psy17820        101 KEGWLWKQG--------GRYKSWKRRWFILNDKCLYYFEYTTD----K--EPRGIIPLENIQVREVHD-RHKPHCFELFT  165 (210)
Q Consensus       101 ~~G~L~k~~--------~~~~~wk~r~fvL~~~~L~yy~~~~~----~--~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~  165 (210)
                      ++|||.|++        +..+.|++|||||.++.|+||+++.+    .  .+.+.|+|.++.+...++ .+++++|+|.+
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~   80 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEe
Confidence            489999998        56789999999999999999998752    2  366778998887765433 46789999987


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +++                   ++|+|+|+|++|+++||.||+++
T Consensus        81 ~~~-------------------~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           81 SDG-------------------NEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTS-------------------CEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCC-------------------CEEEEECCCHHHHHHHHHHHhcC
Confidence            643                   79999999999999999999864

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.83  E-value=1.9e-20  Score=131.10  Aligned_cols=94  Identities=19%  Similarity=0.332  Sum_probs=76.9

Q ss_pred             cCCcceeeEEeecCc--------cCCeeEEEEEEeCCEEEEeccCCCC------CceeEEEeCCeEEEEecC-CCCcceE
Q psy17820         97 FNPDKEGWLWKQGGR--------YKSWKRRWFILNDKCLYYFEYTTDK------EPRGIIPLENIQVREVHD-RHKPHCF  161 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~--------~~~wk~r~fvL~~~~L~yy~~~~~~------~~~~~i~L~~~~v~~~~~-~~~~~~f  161 (210)
                      ..+.++|||.|++..        .+.|++|||||+++.|+||+++.+.      .+...|+|.++.+....+ .+++++|
T Consensus         6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~F   85 (123)
T 1wjm_A            6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVF   85 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEE
T ss_pred             CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCEE
Confidence            346799999998643        6799999999999999999987542      134568888887766544 5789999


Q ss_pred             EEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        162 ELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .|.++++                   ++|+|+|+|++|+++||.||+.
T Consensus        86 ~i~~~~~-------------------~~~~f~A~s~~e~~~Wi~ai~~  114 (123)
T 1wjm_A           86 KLGLQDG-------------------KEYLFQAKDEAEMSSWLRVVNA  114 (123)
T ss_dssp             EEECSSS-------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEcCC-------------------cEEEEECCCHHHHHHHHHHHHH
Confidence            9987653                   7999999999999999999985

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.83  E-value=5.6e-20  Score=140.22  Aligned_cols=94  Identities=28%  Similarity=0.595  Sum_probs=81.9

Q ss_pred             cCCcceeeEEeecCc----cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec----CCCCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH----DRHKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~----~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~----~~~~~~~f~i~~~~~  168 (210)
                      ..+.++|||.|+++.    .+.|++|||||.++.|+||+++.+..|.|.|+|.++.+...+    +.+++++|.|.+++.
T Consensus       104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~  183 (211)
T 1u5e_A          104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  183 (211)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCC
Confidence            457899999999853    569999999999999999999998899999999999887653    235679999987642


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                         |+|+|+|+|++|++.||.||+.
T Consensus       184 -------------------r~~~l~A~s~~e~~~Wi~aL~~  205 (211)
T 1u5e_A          184 -------------------RIYQFTAASPKDAEEWVQQLKF  205 (211)
T ss_dssp             -------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                               7999999999999999999985

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.82  E-value=1.2e-19  Score=126.23  Aligned_cols=92  Identities=24%  Similarity=0.441  Sum_probs=77.4

Q ss_pred             cceeeEEee-----cCc--cCCeeEEEEEEeCCEEEEeccCC---------CCCceeEEEeCCeEEEEecCCCCcceEEE
Q psy17820        100 DKEGWLWKQ-----GGR--YKSWKRRWFILNDKCLYYFEYTT---------DKEPRGIIPLENIQVREVHDRHKPHCFEL  163 (210)
Q Consensus       100 ~~~G~L~k~-----~~~--~~~wk~r~fvL~~~~L~yy~~~~---------~~~~~~~i~L~~~~v~~~~~~~~~~~f~i  163 (210)
                      .++|+|.++     |++  .++|+++||+|.++.|+||+...         +.+|.+.|+|.++.|...+...++++|+|
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~~~~~~~F~L   81 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQL   81 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCCTTSTTEEEE
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEecCCCCCCCEEEE
Confidence            467888854     443  57999999999999999999764         56899999999999986556678999999


Q ss_pred             EeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .++..                  ...|.|+|+|+++++.|+.||++
T Consensus        82 ~~~~~------------------G~~Y~fqA~s~~~~~~W~~ai~~  109 (126)
T 2dtc_A           82 NNPDK------------------GNVYKFQTGSRFHAILWHKHLDD  109 (126)
T ss_dssp             ECTTS------------------CSEEEEECSSHHHHHHHHHHHHH
T ss_pred             eeCCC------------------CCEEEEeCCCHHHHHHHHHHHHH
Confidence            97632                  25899999999999999999975

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=133.66  Aligned_cols=93  Identities=25%  Similarity=0.402  Sum_probs=75.5

Q ss_pred             cCCcceeeEEeecCc-----cCCeeEEEEEEeCCEEEEeccCCC-CCceeEEEeCCeEEE-EecCC------CCcceEEE
Q psy17820         97 FNPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVR-EVHDR------HKPHCFEL  163 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~-----~~~wk~r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~~v~-~~~~~------~~~~~f~i  163 (210)
                      .+++++|||.|++..     .+.||+|||||+++.|+||+++.+ ..+.|.|+|..+... .+.+.      ..+++|+|
T Consensus        13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i   92 (164)
T 2lul_A           13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQV   92 (164)
T ss_dssp             SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEE
T ss_pred             CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccccccEEEEeeeEEEEeccccccCcccccceeEEE
Confidence            567899999999753     246999999999999999998764 457899999986543 33222      35678888


Q ss_pred             EeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++++                    |+|+|+|+|++|+++||.||++
T Consensus        93 ~t~~--------------------rt~~l~A~s~~e~~~Wi~aL~~  118 (164)
T 2lul_A           93 VHDA--------------------NTLYIFAPSPQSRDLWVKKLKE  118 (164)
T ss_dssp             ECSS--------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             ecCC--------------------cEEEEECCCHHHHHHHHHHHHH
Confidence            8764                    7999999999999999999985

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.80  E-value=2.1e-19  Score=132.53  Aligned_cols=92  Identities=23%  Similarity=0.489  Sum_probs=65.4

Q ss_pred             CCcceeeEE----------eecCccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCC--eEEEEec-CCCCcceEE
Q psy17820         98 NPDKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLEN--IQVREVH-DRHKPHCFE  162 (210)
Q Consensus        98 ~~~~~G~L~----------k~~~~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~--~~v~~~~-~~~~~~~f~  162 (210)
                      ++.++|||.          |+++..+.|++|||||.++.|+||+++.+  ..+.+.|+|..  +.+.... ..+++++|+
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~   81 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFR   81 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEE
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEeccccCCCCCEEE
Confidence            467999999          44556789999999999999999999855  56788888876  5554333 346789999


Q ss_pred             EEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        163 LFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       163 i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |.+++                    ++|+|+|+|++|+++||.||+.
T Consensus        82 I~t~~--------------------r~~~l~A~s~~e~~~Wi~ai~~  108 (168)
T 2j59_M           82 LTTSD--------------------CECLFQAEDRDDMLAWIKTIQE  108 (168)
T ss_dssp             EECSS--------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEeCC--------------------ceEEEEcCCHHHHHHHHHHHHH
Confidence            98764                    6899999999999999999985

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.80  E-value=3e-19  Score=140.35  Aligned_cols=94  Identities=27%  Similarity=0.492  Sum_probs=77.7

Q ss_pred             cCCcceeeEE--------eecCc----cCCeeEEEEEEeCCEEEEeccC------CCCCceeEEEeCCeEEEEecC-CCC
Q psy17820         97 FNPDKEGWLW--------KQGGR----YKSWKRRWFILNDKCLYYFEYT------TDKEPRGIIPLENIQVREVHD-RHK  157 (210)
Q Consensus        97 ~~~~~~G~L~--------k~~~~----~~~wk~r~fvL~~~~L~yy~~~------~~~~~~~~i~L~~~~v~~~~~-~~~  157 (210)
                      ..+.++|||.        |.++.    .++|++|||||+++.|+||+++      .+..|.+.|+|.++.+....+ .++
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kk   88 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKK   88 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSSC
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcCCCC
Confidence            4567999999        44444    6799999999999999999984      456789999999988876544 367


Q ss_pred             cceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       158 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++|+|.++.+                   ++|+|+|+|++|+++||.||+.
T Consensus        89 ~~~F~I~t~~~-------------------r~y~f~A~s~ee~~~Wi~aI~~  121 (263)
T 3a8p_A           89 EHVFCLSNSCG-------------------DVYLFQATSQTDLENWVTAIHS  121 (263)
T ss_dssp             SSEEEEECTTS-------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCC-------------------cEEEEEcCCHHHHHHHHHHHHH
Confidence            89999987543                   7999999999999999999975

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.80  E-value=3.4e-19  Score=125.61  Aligned_cols=93  Identities=24%  Similarity=0.409  Sum_probs=67.6

Q ss_pred             CCcceeeEEeecC--ccCCeeEEEEEEeC-CEEEEeccCCC---CCceeEEEeCCeEEEEec------------------
Q psy17820         98 NPDKEGWLWKQGG--RYKSWKRRWFILND-KCLYYFEYTTD---KEPRGIIPLENIQVREVH------------------  153 (210)
Q Consensus        98 ~~~~~G~L~k~~~--~~~~wk~r~fvL~~-~~L~yy~~~~~---~~~~~~i~L~~~~v~~~~------------------  153 (210)
                      .|+++|||.|+++  ..++|++|||||.+ +.|+||++..+   ....+.|+|..+++....                  
T Consensus         3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~   82 (128)
T 2rlo_A            3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSA   82 (128)
T ss_dssp             CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCC
T ss_pred             cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccc
Confidence            3579999999953  57899999999996 78888875321   112334555554433210                  


Q ss_pred             --CCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        154 --DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       154 --~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                        ...++++|.|+++++                   ++|+|+|+|++|+++||.||++
T Consensus        83 ~~~~~~~~~F~I~t~~~-------------------r~~~l~A~s~~e~~~Wi~ai~~  121 (128)
T 2rlo_A           83 GQAEEENFEFLIVSSTG-------------------QTWHFEAASFEERDAWVQAIES  121 (128)
T ss_dssp             SSCCCCCCCEEEECTTS-------------------CEEEEEESSHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEcCCC-------------------CEEEEEcCCHHHHHHHHHHHHH
Confidence              114678999887642                   7999999999999999999985

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.80  E-value=8.7e-19  Score=122.83  Aligned_cols=94  Identities=20%  Similarity=0.373  Sum_probs=76.9

Q ss_pred             cCCcceeeEEee-----cC--ccCCeeEEEEEEeCCEEEEeccCCCC------------CceeEEEeCCeEEEEec--CC
Q psy17820         97 FNPDKEGWLWKQ-----GG--RYKSWKRRWFILNDKCLYYFEYTTDK------------EPRGIIPLENIQVREVH--DR  155 (210)
Q Consensus        97 ~~~~~~G~L~k~-----~~--~~~~wk~r~fvL~~~~L~yy~~~~~~------------~~~~~i~L~~~~v~~~~--~~  155 (210)
                      .++.++|||.++     |.  ..++|+++||||+++.|+||+++.+.            .|.+.|+|.++.+...+  ..
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~~   85 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKS   85 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGGC
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccccC
Confidence            456799999987     21  23589999999999999999987654            47889999999887763  45


Q ss_pred             CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       156 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++++|+|.++++                   +.|+|+|+|++||++||.+|+.
T Consensus        86 krk~vF~l~t~~~-------------------~~ylfqA~s~~e~~~Wi~aI~~  120 (124)
T 3pp2_A           86 SRKNVLELRSRDG-------------------SEYLIQHDSEAIISTWHKAIAQ  120 (124)
T ss_dssp             SSSSEEEEECTTS-------------------CEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCC-------------------CEEEEECCCHHHHHHHHHHHHH
Confidence            7899999987754                   6899999999999999999975

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.79  E-value=1.5e-18  Score=133.99  Aligned_cols=149  Identities=21%  Similarity=0.417  Sum_probs=98.6

Q ss_pred             CCCCeeeEEEeeCCCC-----CCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCcc-e-----------ecccceeEE
Q psy17820          5 FNPDKEGWLWKQGGRY-----KSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSG-R-----------YKSWKRRWF   64 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~-----~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~-~-----------~~~~~~~~~   64 (210)
                      .++.++|||.|+|+..     +.|++|||||+++.|+||+++++..+ +.|  ..+.+ .           ..+.+.+++
T Consensus        56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~~k~~~F~I~t~~r~~~l  135 (228)
T 3tfm_A           56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIMADRTFHL  135 (228)
T ss_dssp             CCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCSEEEEEEGGGCSEEEEETTTTSEEEEECSSCEEEE
T ss_pred             CCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCCCCCcEEEEEcCCcEEEE
Confidence            5789999999999855     89999999999999999999987443 333  22221 1           112334556


Q ss_pred             Eechh--HHHHHHhhhcCCccccCCCCCCccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEE
Q psy17820         65 ILNDK--CLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGII  142 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i  142 (210)
                      .+++.  +..|+.+|.......+.    +.    ... .       .                     .........+.+
T Consensus       136 ~A~s~~e~~~Wv~aL~~~i~~~~~----~~----~~~-~-------~---------------------~~~~~~~~~g~~  178 (228)
T 3tfm_A          136 IAESPEDASQWFSVLSQVHSSTDQ----EI----REM-H-------D---------------------EQANPQNAVGTL  178 (228)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCCHH----HH----TTC-C-------C---------------------CCCCTTTCSEEE
T ss_pred             EcCCHHHHHHHHHHHHHHHhcccc----ch----hhh-h-------h---------------------cccCcccccccC
Confidence            66554  88999988765421110    00    000 0       0                     001122356777


Q ss_pred             EeCCeEEE-EecCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        143 PLENIQVR-EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       143 ~L~~~~v~-~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      ++..+... ......+++.|.|+++.                    |.++|.|+|++|+++|+.+||.+
T Consensus       179 ~~~~i~s~~~~~~~~~~~~f~iit~~--------------------r~~~~~a~s~~e~~~Wi~~lq~~  227 (228)
T 3tfm_A          179 DVGLIDSVCASDSPDRPNSFVIITAN--------------------RVLHCNADTPEEMHHWITLLQRS  227 (228)
T ss_dssp             EGGGEEEEEECCCSSCTTEEEEEETT--------------------EEEEEECSSHHHHHHHHHHHCSC
T ss_pred             ChhheeccccCCCCCCCCcEEEEeCC--------------------ceEEEEcCCHHHHHHHHHHHhhc
Confidence            77765433 33334577888887774                    89999999999999999999974

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.78  E-value=1.2e-19  Score=126.94  Aligned_cols=94  Identities=14%  Similarity=0.322  Sum_probs=76.5

Q ss_pred             cCCcceeeEEeecC--------ccCCeeEEEEEEeCCEEEEeccCCCCCc--------eeEEEeCCeEEEEecC-CCCcc
Q psy17820         97 FNPDKEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTDKEP--------RGIIPLENIQVREVHD-RHKPH  159 (210)
Q Consensus        97 ~~~~~~G~L~k~~~--------~~~~wk~r~fvL~~~~L~yy~~~~~~~~--------~~~i~L~~~~v~~~~~-~~~~~  159 (210)
                      ..+.++|||.++..        ..+.|++|||||+++.|+||+++.+..+        .+.|+|.++.+....+ .++++
T Consensus         6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~kr~~   85 (122)
T 1dro_A            6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKH   85 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTT
T ss_pred             CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCCCCCCe
Confidence            35679999988742        3569999999999999999998865432        3678998887766544 36889


Q ss_pred             eEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       160 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|+|.+.++                   ++|+|+|+|++||++||.||+.
T Consensus        86 ~F~l~t~~~-------------------~~~lfqA~s~~e~~~Wi~ai~~  116 (122)
T 1dro_A           86 VLRVKLANG-------------------ALFLLQAHDDTEMSQWVTSLKA  116 (122)
T ss_dssp             EEEEECSSS-------------------CEEEEECSSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCC-------------------CEEEEECCCHHHHHHHHHHHHH
Confidence            999986543                   7999999999999999999985

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.77  E-value=2.5e-18  Score=142.52  Aligned_cols=94  Identities=17%  Similarity=0.296  Sum_probs=78.9

Q ss_pred             cCCcceeeEEeecCc--c-CCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeee
Q psy17820         97 FNPDKEGWLWKQGGR--Y-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~--~-~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~  173 (210)
                      ..+.++|||.|+++.  . +.|++|||+|+++.|+||++ .+..+.+.|+|.+|+|...++.++++||+|.++++     
T Consensus       276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~~~~~i~l~~~~v~~~~~~~r~~~F~i~t~~~-----  349 (385)
T 2q13_A          276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVAGGLAMDIDNCSVMAVDCEDRRYCFQITSFDG-----  349 (385)
T ss_dssp             CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSSCEEEEECTTCEEEEECCTTCSSEEEEECTTS-----
T ss_pred             CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcCCCceEEccceEEEeccccCCCceEEEEeCCC-----
Confidence            356899999999854  3 37999999999999999999 45678899999999998887778889999998752     


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   .++|+|+|+|++|+++||.||+.
T Consensus       350 -------------~~~~~l~A~s~~e~~~Wi~ai~~  372 (385)
T 2q13_A          350 -------------KKSSILQAESKKDHEEWICTINN  372 (385)
T ss_dssp             -------------CBCCCEECSSHHHHHHHHHHHHH
T ss_pred             -------------CeEEEEEeCCHHHHHHHHHHHHH
Confidence                         26999999999999999999985

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.77  E-value=1.1e-18  Score=137.10  Aligned_cols=89  Identities=29%  Similarity=0.531  Sum_probs=77.0

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCC-------EEEEeccCCC-----CCceeEEEeCCeE-EEEecCCCCcceEEE
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDK-------CLYYFEYTTD-----KEPRGIIPLENIQ-VREVHDRHKPHCFEL  163 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~-------~L~yy~~~~~-----~~~~~~i~L~~~~-v~~~~~~~~~~~f~i  163 (210)
                      .++.++|||.|+    +.|++|||||.++       .|.||+++.+     ..|++.|+|.++. |....+.+++++|.|
T Consensus         8 ~~v~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F~I   83 (264)
T 1qqg_A            8 SDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVAL   83 (264)
T ss_dssp             -CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEE
T ss_pred             CCccEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEEEE
Confidence            467799999998    7999999999988       9999998876     5799999999976 444555677899999


Q ss_pred             EeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+++                    |+|+|+|+|++|+++||.+|+.
T Consensus        84 ~t~~--------------------rty~l~A~se~e~~~Wi~aL~~  109 (264)
T 1qqg_A           84 YTRD--------------------EHFAIAADSEAEQDSWYQALLQ  109 (264)
T ss_dssp             EESS--------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             EECC--------------------EEEEEEeCCHHHHHHHHHHHHH
Confidence            8773                    7999999999999999999975

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=145.17  Aligned_cols=94  Identities=22%  Similarity=0.299  Sum_probs=80.6

Q ss_pred             cCCcceeeEEee---cCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeee
Q psy17820         97 FNPDKEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        97 ~~~~~~G~L~k~---~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~  173 (210)
                      ..+.++|||+|+   |+..+.|+||||+|+++.|+||+.. +..+.+.|+|.+|+|...+..++++||+|++++.     
T Consensus       299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~-~~~~~~~~~l~~~~v~~~~~~~r~~cF~i~~~~~-----  372 (407)
T 4h8s_A          299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRG-AVAGGLIQDLDNCSVMAVDCEDRRYCFQITTPNG-----  372 (407)
T ss_dssp             SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTT-CSSCCCCBCSSCCEEEEECCTTCSSEEEEECTTS-----
T ss_pred             CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCC-CCCCCeEEECCceEEEECCCCCCCceEEEEecCC-----
Confidence            456789999988   4445689999999999999999866 4457788999999998888888999999998753     


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   .++|+|+|+|++|+++||.||+.
T Consensus       373 -------------~~~~~l~A~s~~e~~~Wi~ai~~  395 (407)
T 4h8s_A          373 -------------KSGIILQAESRKENEEWICAINN  395 (407)
T ss_dssp             -------------SCCEEEECSSSHHHHHHHHHHHH
T ss_pred             -------------CceEEEEcCCHHHHHHHHHHHHH
Confidence                         36899999999999999999974

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.74  E-value=7.2e-18  Score=134.57  Aligned_cols=99  Identities=23%  Similarity=0.446  Sum_probs=79.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeC---CeEEEEecC------CCCcceEEEEeCC
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLE---NIQVREVHD------RHKPHCFELFTSG  167 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~---~~~v~~~~~------~~~~~~f~i~~~~  167 (210)
                      ..|.++|||+|+++..++|++|||||+++.|+||+++.+..|.+.|.|.   .+.+.....      ..+++||.|.+++
T Consensus       166 ~~p~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~  245 (291)
T 3tca_A          166 IVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQ  245 (291)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTT
T ss_pred             CCCceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCC
Confidence            4578999999999888999999999999999999998888887776664   455544322      2568999999874


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .              ..+..++|+|+|+|++++..||.||+.
T Consensus       246 ~--------------~~~~~~~~~l~A~s~~e~~~Wi~air~  273 (291)
T 3tca_A          246 I--------------QKESQYIKYLCCDDARTLSQWVMGIRI  273 (291)
T ss_dssp             C--------------CSCCTTSEEEECSSHHHHHHHHHHHHH
T ss_pred             C--------------CCCCceEEEEECCCHHHHHHHHHHHHH
Confidence            2              112346899999999999999999974

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.74  E-value=5.5e-18  Score=140.07  Aligned_cols=96  Identities=22%  Similarity=0.434  Sum_probs=76.7

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEE--eCCEEEEeccCCCCCceeEEEeCCeEEEEecC-CCCcceEEEEeCCceeeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHD-RHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL--~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~~  174 (210)
                      ...++|||.|+|+..+.|++|||||  .++.|+||+++.+..|+|.|.|.++.+...+. .+.+++|+|....       
T Consensus       145 ~~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~-------  217 (386)
T 3lju_X          145 AGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLK-------  217 (386)
T ss_dssp             SSEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEE-------
T ss_pred             ccccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEcccccCCCceEEEEEec-------
Confidence            4568999999999999999999999  89999999999999999999999987666432 2678999986321       


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                               .++.|+|+|+|+|.+|+.+|+.||+.
T Consensus       218 ---------~~~~R~y~l~A~s~~e~~~Wi~aIr~  243 (386)
T 3lju_X          218 ---------DNSTRNIFIYHEDGKEIVDWFNALRA  243 (386)
T ss_dssp             ---------TTEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------CCCceEEEEEcCCHHHHHHHHHhhhh
Confidence                     12348999999999999999999974

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=7.3e-18  Score=117.25  Aligned_cols=97  Identities=13%  Similarity=0.308  Sum_probs=78.8

Q ss_pred             cCCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCCC--CceeEEEeCCeEEEEecC-CCCcceEEEEeCCcee
Q psy17820         97 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDK--EPRGIIPLENIQVREVHD-RHKPHCFELFTSGFEF  170 (210)
Q Consensus        97 ~~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~~--~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~  170 (210)
                      ..|..++||...++   ..++||+|||+|+++.|+||+++.+.  .|.|.|+|++|+|.+... .+.+++|.+..+..  
T Consensus         7 ~~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~--   84 (137)
T 2ys3_A            7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSP--   84 (137)
T ss_dssp             SCCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECS--
T ss_pred             CCcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhccCCCceEEECCCCEEeccccccCCceEEEEEccCC--
Confidence            35788999998764   35689999999999999999988776  899999999999766432 35677777765421  


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    .+.++|+|.|||++++.+||.|++.
T Consensus        85 --------------~g~r~y~l~cdsEeqy~~WMaA~rl  109 (137)
T 2ys3_A           85 --------------EGMSEIYLRCQDEQQYARWMAGCRL  109 (137)
T ss_dssp             --------------SSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             --------------CCceEEEEECCCHHHHHHHHHHHHH
Confidence                          1248999999999999999999974

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.72  E-value=6.3e-17  Score=114.67  Aligned_cols=93  Identities=23%  Similarity=0.438  Sum_probs=77.8

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC----------------------------------CCc-------
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD----------------------------------KEP-------  138 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~----------------------------------~~~-------  138 (210)
                      .+.|||+++++..+.|.+|||||.++.|+|++...+                                  ..|       
T Consensus         2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E   81 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDE   81 (150)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCT
T ss_pred             CcceEEEeecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccc
Confidence            589999999999999999999999999999871110                                  111       


Q ss_pred             --------eeEEEeCCeEEEEecCC--CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        139 --------RGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       139 --------~~~i~L~~~~v~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                              .|.|+|.+|+|...+..  +++++|.|.++..                 +.++|.|+|+|.++|.+||.||+
T Consensus        82 ~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~-----------------~~~~~~laAds~Eem~dW~kaIr  144 (150)
T 2fjl_A           82 NSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSV-----------------AQWSLDVAADSQEELQDWVKKIR  144 (150)
T ss_dssp             TTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTT-----------------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred             cccccccccceEecCccEEEeccCCCCCCceEEEEeCCCC-----------------CCceEEEEeCCHHHHHHHHHHHH
Confidence                    79999999999887643  6889999988753                 24799999999999999999998


Q ss_pred             c
Q psy17820        209 L  209 (210)
Q Consensus       209 ~  209 (210)
                      .
T Consensus       145 e  145 (150)
T 2fjl_A          145 E  145 (150)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.67  E-value=1.7e-16  Score=109.67  Aligned_cols=95  Identities=21%  Similarity=0.506  Sum_probs=72.8

Q ss_pred             ceeeEEe--ecCccC-CeeEEEEEEeCCEEEEeccCCC---CCceeEEEeCCe-EEEEecC--------CCCcceEEEEe
Q psy17820        101 KEGWLWK--QGGRYK-SWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENI-QVREVHD--------RHKPHCFELFT  165 (210)
Q Consensus       101 ~~G~L~k--~~~~~~-~wk~r~fvL~~~~L~yy~~~~~---~~~~~~i~L~~~-~v~~~~~--------~~~~~~f~i~~  165 (210)
                      ++|||.+  +++..+ +|++|||||.++.|+||+++.+   ..|.+.|+|..+ .|..+.+        ...++.|+|..
T Consensus         3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~   82 (117)
T 2rov_A            3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILY   82 (117)
T ss_dssp             SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEE
T ss_pred             eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEEEe
Confidence            6899996  666677 8999999999999999998754   378999999764 3444432        12467899876


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...+              ..+.++++|.|+|++|+++||.||++
T Consensus        83 ~~~~--------------~~~~~~l~l~A~s~~e~~~WV~aL~~  112 (117)
T 2rov_A           83 ANEG--------------ISSAKNLLLLANSTEEQQKWVSRLVK  112 (117)
T ss_dssp             CSSS--------------STTCEEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCC--------------CCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence            4210              11247999999999999999999975

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=106.05  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=53.2

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc---ccccC--Cccee-----------cccceeEEEechh-
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA---CLIEN--SSGRY-----------KSWKRRWFILNDK-   69 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~---~~i~~--~~~~~-----------~~~~~~~~~~~~~-   69 (210)
                      +.|+|||.|+|+..++|++|||||+++.|+||+++.+...   +.|..  +.+..           .+.+.+++.+++. 
T Consensus         1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~r~~~l~A~s~~   80 (94)
T 2rsg_A            1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPD   80 (94)
T ss_dssp             CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEECSSCSSEEEEEETTEEEEEECCSSC
T ss_pred             CCEEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccccccceeeEecceeeeecCcccceeEEEEeCCeEEEEECCCHH
Confidence            5799999999999999999999999999999998877542   22322  22211           1223345555543 


Q ss_pred             -HHHHHHhhhcC
Q psy17820         70 -CLYYFEYTTDK   80 (210)
Q Consensus        70 -~~~~~~~i~~~   80 (210)
                       +..|+++|.++
T Consensus        81 e~~~Wi~aLq~A   92 (94)
T 2rsg_A           81 HRQQWIDAIEQH   92 (94)
T ss_dssp             CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence             88999988764

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.63  E-value=2.3e-16  Score=109.03  Aligned_cols=78  Identities=21%  Similarity=0.393  Sum_probs=54.5

Q ss_pred             CCCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEe----ecCCccc-ccc--cCCcce-----------------ecc
Q psy17820          4 FFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFE----YTTDKSA-CLI--ENSSGR-----------------YKS   58 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~----~~~~~~~-~~i--~~~~~~-----------------~~~   58 (210)
                      ..|+.++|||+|+|+ ..|+||||||||+++.|+||+    ++.+..| +.|  ..+.|.                 ...
T Consensus         5 p~n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~   84 (126)
T 1wi1_A            5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE   84 (126)
T ss_dssp             CCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS
T ss_pred             CCCCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEEecC
Confidence            357889999999998 679999999999999999999    7766553 333  222221                 011


Q ss_pred             cceeEEEechh--HHHHHHhhhcCC
Q psy17820         59 WKRRWFILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~i~~~~   81 (210)
                      ...+++.++++  ++.|+.+|..+.
T Consensus        85 ~~ty~~~Adseee~~~WikAi~~A~  109 (126)
T 1wi1_A           85 GDTVIFASDDEQDRILWVQAMYRAT  109 (126)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHHh
Confidence            12345566554  889998886643

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.63  E-value=5.4e-15  Score=105.28  Aligned_cols=96  Identities=11%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             cCCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEE-ecCCCCcceEEEEeCCcee
Q psy17820         97 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVRE-VHDRHKPHCFELFTSGFEF  170 (210)
Q Consensus        97 ~~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~-~~~~~~~~~f~i~~~~~~~  170 (210)
                      .-|...+||....+   ..++||++||++++..|+||+++++  ..|.+.|.|+||.|.+ +.-...++++.+..+.   
T Consensus        45 ~iPeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~---  121 (173)
T 4f7h_A           45 SIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPV---  121 (173)
T ss_dssp             GTTCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEE---
T ss_pred             cChhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhcCCCceEEecCceEEeccccccccceeEEEeccC---
Confidence            55788999987653   4679999999999999999999877  6799999999999986 4445667777765441   


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                   ..+...++|+|+++.++.+||.|++
T Consensus       122 -------------~~gm~e~~Lrcd~E~qya~WMAAcr  146 (173)
T 4f7h_A          122 -------------AEGMNEIWLRCDNEKQYAHWMAACR  146 (173)
T ss_dssp             -------------TTEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             -------------CCCcceeeeecCCHHHHHHHHHHhh
Confidence                         1135799999999999999999986

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.62  E-value=1.6e-15  Score=109.12  Aligned_cols=76  Identities=9%  Similarity=0.113  Sum_probs=55.5

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCc--ce--e-------------cccceeEEEe
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSS--GR--Y-------------KSWKRRWFIL   66 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~--~~--~-------------~~~~~~~~~~   66 (210)
                      .++.++|||.|+|+..++||||||||++++|+||+++.+..+ +.|...+  +.  +             .+.+.+++.+
T Consensus        16 ~pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A   95 (149)
T 1x1f_A           16 LPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKT   95 (149)
T ss_dssp             SCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEEC
T ss_pred             CCccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEEcCCCEEEEEc
Confidence            458899999999999999999999999999999999988764 3332222  11  1             1122334555


Q ss_pred             chh--HHHHHHhhhcC
Q psy17820         67 NDK--CLYYFEYTTDK   80 (210)
Q Consensus        67 ~~~--~~~~~~~i~~~   80 (210)
                      ++.  ++.|+.+|+..
T Consensus        96 ~s~ee~~eWi~aI~~v  111 (149)
T 1x1f_A           96 ENTESGEEWRGFILTV  111 (149)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            544  89999999754

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.61  E-value=1.9e-15  Score=106.45  Aligned_cols=44  Identities=20%  Similarity=0.398  Sum_probs=39.2

Q ss_pred             CCCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          2 HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      |.-..++++|||.|+| ..++|+||||||++++|+||+++++..+
T Consensus         3 ~~~~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~p   46 (130)
T 1v88_A            3 SGSSGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQW   46 (130)
T ss_dssp             CSSSSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSSCCC
T ss_pred             CCCCceEEEeEEEEeC-CCCCceEEEEEEECCEEEEECCCCCCCc
Confidence            4556789999999999 8899999999999999999999988653

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.61  E-value=1.9e-15  Score=103.40  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=37.0

Q ss_pred             CCCCCeeeEEEee-CCCCCC-ceeEEEEEeCCEEEEEeecCCccc
Q psy17820          4 FFNPDKEGWLWKQ-GGRYKS-WKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         4 ~~~~~~~G~L~K~-g~~~~~-wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ..+|.++|||.|+ ++..+. ||+|||||++++|+||+++.|+++
T Consensus         9 ~~~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~   53 (125)
T 1dyn_A            9 EILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEK   53 (125)
T ss_dssp             -CCEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCE
T ss_pred             ccceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCccccc
Confidence            3458999999995 666665 999999999999999999999875

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.60  E-value=3.7e-15  Score=101.73  Aligned_cols=82  Identities=20%  Similarity=0.306  Sum_probs=58.3

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCC--cce---------------ecccceeEE
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENS--SGR---------------YKSWKRRWF   64 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~--~~~---------------~~~~~~~~~   64 (210)
                      .-.++.++|||.|+|+..+.|+||||||+++.|+||+++.+..+ +.|...  .+.               ....+.+++
T Consensus         4 ~~~~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~   83 (109)
T 1wgq_A            4 GSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVF   83 (109)
T ss_dssp             CCCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEE
T ss_pred             CCCCCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCcCccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEE
Confidence            44688999999999999999999999999999999999887553 222211  110               011122455


Q ss_pred             Eechh--HHHHHHhhhcCCccc
Q psy17820         65 ILNDK--CLYYFEYTTDKPFKI   84 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~~~~~   84 (210)
                      .+++.  +..|+.+|..+.+..
T Consensus        84 ~a~s~~e~~~Wi~al~~a~~~~  105 (109)
T 1wgq_A           84 KADDAHSTQRWIDAFQEGTVSG  105 (109)
T ss_dssp             ECSSHHHHHHHHHHHHHHHSCC
T ss_pred             ECCCHHHHHHHHHHHHHHhccC
Confidence            55544  889999998775544

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.60  E-value=4.8e-15  Score=103.72  Aligned_cols=44  Identities=80%  Similarity=1.596  Sum_probs=40.5

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      |++++.++|||.|+|+..++|++|||||+++.|+||+++++..+
T Consensus         1 t~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~   44 (127)
T 1fgy_A            1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP   44 (127)
T ss_dssp             CCSSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSC
T ss_pred             CCCCCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCCCCCc
Confidence            68999999999999999999999999999999999998877543

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.59  E-value=1.5e-14  Score=101.94  Aligned_cols=96  Identities=16%  Similarity=0.255  Sum_probs=75.8

Q ss_pred             cCCcceeeEEeecC---ccCCeeEEEEEEeCCEEEEeccCCC--CCceeEEEeCCeEEEE-ecCCCCcceEEEEeCCcee
Q psy17820         97 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTD--KEPRGIIPLENIQVRE-VHDRHKPHCFELFTSGFEF  170 (210)
Q Consensus        97 ~~~~~~G~L~k~~~---~~~~wk~r~fvL~~~~L~yy~~~~~--~~~~~~i~L~~~~v~~-~~~~~~~~~f~i~~~~~~~  170 (210)
                      ..|...+||....+   ..++||++||++++..|+||+++++  ..|.+.|.|.||.|.+ +.-...++++.|..+.   
T Consensus        24 ~iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~---  100 (165)
T 4bbk_A           24 DIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPV---  100 (165)
T ss_dssp             --CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTTSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEE---
T ss_pred             cChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhcCCCceEEecCccEEecccccccceeeEEEecCC---
Confidence            45778999987653   4679999999999999999999876  6799999999999886 5556778888875442   


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                                   ..+...++|+|+++.+..+||.|++
T Consensus       101 -------------~~gm~e~~LrcdsE~QYa~WMAAcr  125 (165)
T 4bbk_A          101 -------------ADGMNEVYLRCDHEDQYARWMAACI  125 (165)
T ss_dssp             -------------TTEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             -------------CCcceeeeeecCCHHHHHHHHHHhh
Confidence                         1134699999999999999999986

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.59  E-value=1.3e-15  Score=119.58  Aligned_cols=94  Identities=22%  Similarity=0.356  Sum_probs=75.9

Q ss_pred             cCCcceeeEEee-----cC-------ccCCeeEEEEEEeCCEEEEeccCCC------CCceeEEEeCCeEEEEecC-CCC
Q psy17820         97 FNPDKEGWLWKQ-----GG-------RYKSWKRRWFILNDKCLYYFEYTTD------KEPRGIIPLENIQVREVHD-RHK  157 (210)
Q Consensus        97 ~~~~~~G~L~k~-----~~-------~~~~wk~r~fvL~~~~L~yy~~~~~------~~~~~~i~L~~~~v~~~~~-~~~  157 (210)
                      ..+.++|||.++     +.       ..+.|+++||||.++.|+||+++..      ..|.+.|.|.++.+...++ .++
T Consensus         9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~kK   88 (279)
T 3a8n_A            9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKK   88 (279)
T ss_dssp             -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSS
T ss_pred             CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCCC
Confidence            456799999754     11       2469999999999999999998753      3578889999998885443 567


Q ss_pred             cceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       158 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++|.|.++++                   +.|+|+|+|++||+.||.+|+.
T Consensus        89 k~vF~L~t~~g-------------------~~yLFQA~s~eEm~~WI~aI~~  121 (279)
T 3a8n_A           89 DFVFCLSNSLG-------------------DAFLFQTTSQTELENWITAIHS  121 (279)
T ss_dssp             CSCCCEEETTT-------------------EEEECCCSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCC-------------------CEEEEeCCCHHHHHHHHHHHHH
Confidence            89999987764                   7899999999999999999974

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=111.99  Aligned_cols=99  Identities=19%  Similarity=0.334  Sum_probs=79.0

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeE---EEeCCeEEEEecCC------CCcceEEEEeCC
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGI---IPLENIQVREVHDR------HKPHCFELFTSG  167 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~---i~L~~~~v~~~~~~------~~~~~f~i~~~~  167 (210)
                      ..|..+|||++++.+.++|++|||+|+++.|+|++......+.+.   ++|+++.|..+.+.      ..++||.|.++.
T Consensus       130 ~~P~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k  209 (256)
T 3hk0_A          130 SSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNK  209 (256)
T ss_dssp             SCEEEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETT
T ss_pred             CCCcceeEEEEecCCCCcceEEEEEEeCCEEEEEecCCCCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEccc
Confidence            346789999999888899999999999999999998776666654   68999888765432      357999998663


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .              ..+....++|+|++++++..|+.||+.
T Consensus       210 ~--------------~~~~~~~~~lcaede~~~~~W~~aIr~  237 (256)
T 3hk0_A          210 V--------------RNETKELRLLCAEDEQTRTSWMTAFRL  237 (256)
T ss_dssp             C--------------SSCCTTCEEEEESSHHHHHHHHHHHHH
T ss_pred             c--------------cCCCceEEEEEeCCHHHHHHHHHHHHH
Confidence            2              012235799999999999999999974

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.56  E-value=1.9e-14  Score=113.11  Aligned_cols=99  Identities=20%  Similarity=0.440  Sum_probs=73.8

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCc---eeEEEeCCeEEEEec------CCCCcceEEEEeCC
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---RGIIPLENIQVREVH------DRHKPHCFELFTSG  167 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~---~~~i~L~~~~v~~~~------~~~~~~~f~i~~~~  167 (210)
                      ..|..+|||++++.+.++|++|||+|+++.|+|++...+..+   .+.++|+++.|-.+.      ....++||.|.++.
T Consensus       156 ~~pe~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~  235 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQ  235 (281)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSCEEEC---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTT
T ss_pred             CCCccEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCc
Confidence            457789999999988899999999999999999987655444   456689998887654      23568999998764


Q ss_pred             ceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        168 FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+              .+....++|+|++++++..|+.||+.
T Consensus       236 ~~--------------~~~~~~~~~caede~~~~~Wv~Air~  263 (281)
T 4gmv_A          236 IQ--------------KKSQYIKYLCCDDVRTLHQWVNGIRI  263 (281)
T ss_dssp             CC--------------SCCTTCEEEECSSHHHHHHHHHHHHH
T ss_pred             cC--------------CCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            20              11235899999999999999999974

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.56  E-value=2.2e-14  Score=96.80  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=53.8

Q ss_pred             eeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCc---ccccc--cCCccee------------cccceeEEEechh--
Q psy17820          9 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK---SACLI--ENSSGRY------------KSWKRRWFILNDK--   69 (210)
Q Consensus         9 ~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~---~~~~i--~~~~~~~------------~~~~~~~~~~~~~--   69 (210)
                      ++|||.|+|+..++|++|||||+++.|+||+++++.   ..+.|  ..+.+..            ...+.+++.+++.  
T Consensus         1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e   80 (103)
T 3rcp_A            1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAE   80 (103)
T ss_dssp             CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC---CCCSCEEEGGGCEEECCTTCSSEEEEEETTTEEEEEECSSHHH
T ss_pred             CceEEEEccCCCCCeeceEEEEECCEEEEEecCCcccCCcccEEEeeeeEEEEcCCCCceEEEEeCCCCEEEEECCCHHH
Confidence            589999999999999999999999999999998863   22333  2222211            1123345555544  


Q ss_pred             HHHHHHhhhcCCcccc
Q psy17820         70 CLYYFEYTTDKPFKIP   85 (210)
Q Consensus        70 ~~~~~~~i~~~~~~~~   85 (210)
                      +..|+.+|..+...++
T Consensus        81 ~~~Wi~al~~a~~~~~   96 (103)
T 3rcp_A           81 RQRWLVALGSSKASLT   96 (103)
T ss_dssp             HHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8999999988765443

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.56  E-value=2.7e-14  Score=98.51  Aligned_cols=82  Identities=23%  Similarity=0.369  Sum_probs=58.1

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEe--CCEEEEEeecCCccc-ccccCCcc-----------------------eec
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKSA-CLIENSSG-----------------------RYK   57 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~--~~~L~Yy~~~~~~~~-~~i~~~~~-----------------------~~~   57 (210)
                      -.++.++|||.|+|+..+.|++|||||+  ++.|+||+++++..+ +.|....+                       ...
T Consensus         5 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~   84 (117)
T 1v5u_A            5 SSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKT   84 (117)
T ss_dssp             CCSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEE
T ss_pred             cCCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEEC
Confidence            3578999999999999999999999999  889999998877543 22221111                       011


Q ss_pred             ccceeEEEechh--HHHHHHhhhcCCcccc
Q psy17820         58 SWKRRWFILNDK--CLYYFEYTTDKPFKIP   85 (210)
Q Consensus        58 ~~~~~~~~~~~~--~~~~~~~i~~~~~~~~   85 (210)
                      ..+.+++.+++.  +..|+.+|..+....|
T Consensus        85 ~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~  114 (117)
T 1v5u_A           85 TRRVYNFCAQDVPSAQQWVDRIQSCLSSGP  114 (117)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHTTCCCCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHhccCC
Confidence            223345556544  9999999988765444

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.55  E-value=1.7e-14  Score=99.08  Aligned_cols=77  Identities=18%  Similarity=0.327  Sum_probs=54.4

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-cccc--CCcce---------------ecc-cceeEEE
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIE--NSSGR---------------YKS-WKRRWFI   65 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~--~~~~~---------------~~~-~~~~~~~   65 (210)
                      .++.++|||.|+|+..++|++|||||+++.|+||+++++..+ +.|.  .+.+.               ... .+.+++.
T Consensus         3 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~   82 (113)
T 1pls_A            3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQ   82 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEE
Confidence            368899999999999999999999999999999999876543 2222  22111               011 1334455


Q ss_pred             echh--HHHHHHhhhcCC
Q psy17820         66 LNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~~   81 (210)
                      +++.  +..|+.+|..+.
T Consensus        83 a~s~~e~~~Wi~ai~~~~  100 (113)
T 1pls_A           83 AAFLEERDAWVRDINKAI  100 (113)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            5443  889999887653

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=100.11  Aligned_cols=77  Identities=27%  Similarity=0.431  Sum_probs=55.6

Q ss_pred             CCCCeeeEEEeeCC--CCCCceeEEEEEeCC--EEEEEeecCCccc-ccccCCcc--e------------ecccceeEEE
Q psy17820          5 FNPDKEGWLWKQGG--RYKSWKRRWFILNDK--CLYYFEYTTDKSA-CLIENSSG--R------------YKSWKRRWFI   65 (210)
Q Consensus         5 ~~~~~~G~L~K~g~--~~~~wkrRwfvL~~~--~L~Yy~~~~~~~~-~~i~~~~~--~------------~~~~~~~~~~   65 (210)
                      .++.++|||.|+|+  ..+.|++|||||+++  .|+||+++++..+ +.|....+  .            ....+.+++.
T Consensus         6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~~~~~~~~F~i~~~~r~~~l~   85 (119)
T 2dhk_A            6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKTPSRVITLK   85 (119)
T ss_dssp             SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECTTGGGCEEEEECSSCCEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEecCCCCCCEEEEEeCCcEEEEE
Confidence            57899999999997  689999999999998  9999999887543 33332221  1            1123344566


Q ss_pred             echh--HHHHHHhhhcCC
Q psy17820         66 LNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~~   81 (210)
                      +++.  +..|+.+|..+.
T Consensus        86 a~s~~e~~~Wi~al~~~~  103 (119)
T 2dhk_A           86 AATKQAMLYWLQQLQMKR  103 (119)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            6554  889999887653

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=99.18  Aligned_cols=76  Identities=17%  Similarity=0.334  Sum_probs=55.1

Q ss_pred             CCCCeeeEEEeeCCCC-CCceeEEEEEeCCEEEEEeecCCccccccc--CCcce-----------ecccceeEEEechh-
Q psy17820          5 FNPDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKSACLIE--NSSGR-----------YKSWKRRWFILNDK-   69 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~-~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i~--~~~~~-----------~~~~~~~~~~~~~~-   69 (210)
                      .++.++|||.|+++.. +.|+||||||+++.|+||+++.+..+..|.  .+.+.           ..+.+.+++.+++. 
T Consensus         8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~i~l~~~~v~~~~~~~~~F~I~~~~r~~~l~a~s~~   87 (114)
T 2da0_A            8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQ   87 (114)
T ss_dssp             CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCCSCCEEEETTTSEEEECSSSSSCEEEEETTEEEEEECSSHH
T ss_pred             CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCCCCCCEEEeeeeEEEECCCCCCEEEEEcCCcEEEEEcCCHH
Confidence            5789999999999865 999999999999999999998776543322  22221           11233445666554 


Q ss_pred             -HHHHHHhhhcC
Q psy17820         70 -CLYYFEYTTDK   80 (210)
Q Consensus        70 -~~~~~~~i~~~   80 (210)
                       +..|+.+|..+
T Consensus        88 e~~~Wi~al~~~   99 (114)
T 2da0_A           88 DYVAWISVLTNS   99 (114)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             88999988764

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-13  Score=93.25  Aligned_cols=92  Identities=26%  Similarity=0.373  Sum_probs=72.0

Q ss_pred             cCCcceeeEEeec--CccCCeeEEEEEEeC------CEEEEeccCCC----CCceeEEEeCCe-EEEEecCC----CCcc
Q psy17820         97 FNPDKEGWLWKQG--GRYKSWKRRWFILND------KCLYYFEYTTD----KEPRGIIPLENI-QVREVHDR----HKPH  159 (210)
Q Consensus        97 ~~~~~~G~L~k~~--~~~~~wk~r~fvL~~------~~L~yy~~~~~----~~~~~~i~L~~~-~v~~~~~~----~~~~  159 (210)
                      .++.++|||+++.  ...+.|+|+||+|..      ..|-||..++.    ..++.+|.|.+| +|.+....    ...+
T Consensus        10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~   89 (127)
T 2d9w_A           10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTS   89 (127)
T ss_dssp             CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCE
T ss_pred             CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcce
Confidence            5678999999987  345579999999964      38889998654    357899999997 45554433    4557


Q ss_pred             eEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       160 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .|.|.+++                    ++|.|+|++. |+.+||.+|..
T Consensus        90 aF~l~T~e--------------------r~~~laAe~~-E~~~Wi~~ic~  118 (127)
T 2d9w_A           90 AFFLETKE--------------------RLYLLAAPAA-ERGDWVQAICL  118 (127)
T ss_dssp             EEEEEESS--------------------CEEEEEECHH-HHHHHHHHHHH
T ss_pred             EEEEEeCC--------------------cEEEEEeCcH-HHHHHHHHHHH
Confidence            88888774                    7999999965 89999999964

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.54  E-value=3.6e-14  Score=97.69  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             CCCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCcc-cccccCCcc---e---------ecccceeEEEechh
Q psy17820          4 FFNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKS-ACLIENSSG---R---------YKSWKRRWFILNDK   69 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~-~~~i~~~~~---~---------~~~~~~~~~~~~~~   69 (210)
                      -.++.++|||.|+|+ ..+.|+||||||+++.|+||+++++.. .+.|....+   .         ..+.+.+++.+++.
T Consensus         5 ~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~F~i~~~~r~~~l~a~s~   84 (115)
T 2cod_A            5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVEKE   84 (115)
T ss_dssp             CSCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEETTTEEEEEESSCCEEEECSSH
T ss_pred             CCCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCCcccCCEEECCcceEEEeCCCCEEEEEeCCcEEEEECCCH
Confidence            357899999999998 789999999999999999999987744 344433322   1         12233445666544


Q ss_pred             --HHHHHHhhhcCC
Q psy17820         70 --CLYYFEYTTDKP   81 (210)
Q Consensus        70 --~~~~~~~i~~~~   81 (210)
                        +..|+.+|..+.
T Consensus        85 ~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           85 EERNDWISILLNAL   98 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence              889999887653

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.53  E-value=2.2e-14  Score=101.06  Aligned_cols=40  Identities=38%  Similarity=0.838  Sum_probs=36.8

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEE-eCCEEEEEeecCCc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDK   44 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL-~~~~L~Yy~~~~~~   44 (210)
                      ..+.++|||.|+|+..++|||||||| ++++|+||+++.+.
T Consensus         6 ~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~   46 (130)
T 2d9v_A            6 SGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQ   46 (130)
T ss_dssp             CCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTT
T ss_pred             CceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCCCC
Confidence            46789999999999999999999999 89999999998765

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.53  E-value=3e-14  Score=104.39  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CCCCCeeeEEEeeCCCC-----CCceeEEEEEeCCEEEEEeecCCcc--cccccCCcc----------------------
Q psy17820          4 FFNPDKEGWLWKQGGRY-----KSWKRRWFILNDKCLYYFEYTTDKS--ACLIENSSG----------------------   54 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~-----~~wkrRwfvL~~~~L~Yy~~~~~~~--~~~i~~~~~----------------------   54 (210)
                      -.+++++|||+|+|...     ++||+|||||+++.|+||+++.+..  .+.|....+                      
T Consensus        12 ~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~   91 (164)
T 2lul_A           12 NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQ   91 (164)
T ss_dssp             CSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEE
T ss_pred             CCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccccccEEEEeeeEEEEeccccccCcccccceeEE
Confidence            47899999999998743     4799999999999999999876543  233322211                      


Q ss_pred             eecccceeEEEechh--HHHHHHhhhcCC
Q psy17820         55 RYKSWKRRWFILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        55 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~   81 (210)
                      ...+.+.+++.+++.  +..|+++|+...
T Consensus        92 i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i  120 (164)
T 2lul_A           92 VVHDANTLYIFAPSPQSRDLWVKKLKEEI  120 (164)
T ss_dssp             EECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EecCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            011234456777665  889999987643

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.53  E-value=3.2e-14  Score=98.18  Aligned_cols=44  Identities=36%  Similarity=0.703  Sum_probs=39.6

Q ss_pred             CCCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          2 HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      +...++.++|||.|+|+..+.|++|||||+++.|+||+++++..
T Consensus         3 ~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~   46 (118)
T 1v89_A            3 SGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTK   46 (118)
T ss_dssp             CSSSCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCS
T ss_pred             CCCCCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCCCCC
Confidence            34578899999999999999999999999999999999887754

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.52  E-value=1e-14  Score=122.80  Aligned_cols=96  Identities=26%  Similarity=0.494  Sum_probs=69.9

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEe-CCEEEEeccCCCCCceeEEEeCCeEEE----EecCCCCcceEEEEeCCceeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTDKEPRGIIPLENIQVR----EVHDRHKPHCFELFTSGFEFIK  172 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~-~~~L~yy~~~~~~~~~~~i~L~~~~v~----~~~~~~~~~~f~i~~~~~~~~~  172 (210)
                      .++++|||.|+|+..+.||+|||+|+ ++.|.||+++.+..+.+.|+|..+++.    ...+..++++|.|.+.....  
T Consensus         5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~~~--   82 (446)
T 4ejn_A            5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTT--   82 (446)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEECSSSTTEEEEEEEETTE--
T ss_pred             eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCCCCCCceeEEEcCCCce--
Confidence            35789999999999999999999997 899999999998888899999874432    12334567899998664210  


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    .....|.+++.+++++|+.||+.
T Consensus        83 --------------~~~r~~~~~~~ee~e~W~~ai~~  105 (446)
T 4ejn_A           83 --------------VIERTFHVETPEEREEWTTAIQT  105 (446)
T ss_dssp             --------------EEEEEEECSSHHHHHHHHHHHHH
T ss_pred             --------------eeeeEEecCCHHHHHHHHHHHHh
Confidence                          01337899999999999999985

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.52  E-value=8.5e-15  Score=102.41  Aligned_cols=40  Identities=15%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecC
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      +++++.++|||.|+|+..++|++|||||+++.|+||+++.
T Consensus         8 ~~~~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~   47 (124)
T 2w2x_D            8 KKDEHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIE   47 (124)
T ss_dssp             -----CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHH
T ss_pred             hhhhcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccc
Confidence            4678999999999999999999999999999999999853

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=6.9e-14  Score=96.13  Aligned_cols=77  Identities=22%  Similarity=0.247  Sum_probs=55.4

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCc---ce--------------ecccceeEEE
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSS---GR--------------YKSWKRRWFI   65 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~---~~--------------~~~~~~~~~~   65 (210)
                      -.++.++|||.|+|+..+.|++|||||+++.|+||+++++..+ +.|....   +.              ..+.+.+++.
T Consensus         5 ~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~~l~   84 (115)
T 2dn6_A            5 SSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEIS   84 (115)
T ss_dssp             CCSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEE
T ss_pred             CCCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEEEEE
Confidence            4678999999999999999999999999999999998877543 3332221   11              1112334555


Q ss_pred             echh--HHHHHHhhhcC
Q psy17820         66 LNDK--CLYYFEYTTDK   80 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~   80 (210)
                      +++.  +..|+.+|..+
T Consensus        85 a~s~~e~~~Wi~ai~~~  101 (115)
T 2dn6_A           85 ASDKKKKQEWIQAIHST  101 (115)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            5543  88999888654

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.51  E-value=5e-14  Score=98.66  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             CCCeeeEEEeeC-CCCCCceeEEEEEe---CCEEEEEeec----CCccc-ccccCCc---c----------------eec
Q psy17820          6 NPDKEGWLWKQG-GRYKSWKRRWFILN---DKCLYYFEYT----TDKSA-CLIENSS---G----------------RYK   57 (210)
Q Consensus         6 ~~~~~G~L~K~g-~~~~~wkrRwfvL~---~~~L~Yy~~~----~~~~~-~~i~~~~---~----------------~~~   57 (210)
                      +..++|||.|+| +..+.||||||||+   +..|+||+++    .+..+ +.|....   |                ...
T Consensus        14 ~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t   93 (126)
T 1v5p_A           14 QNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINA   93 (126)
T ss_dssp             CCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEEC
T ss_pred             CCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEEC
Confidence            446789999998 57999999999999   6678888883    33332 3332211   1                112


Q ss_pred             ccceeEEEechh--HHHHHHhhhcCCcc
Q psy17820         58 SWKRRWFILNDK--CLYYFEYTTDKPFK   83 (210)
Q Consensus        58 ~~~~~~~~~~~~--~~~~~~~i~~~~~~   83 (210)
                      +.+.+++.+++.  ++.|+++|+.+...
T Consensus        94 ~~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           94 LSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            234456666655  99999999876543

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.50  E-value=8.9e-14  Score=96.99  Aligned_cols=77  Identities=21%  Similarity=0.328  Sum_probs=55.3

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCc---ce----------------ecccceeEE
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSS---GR----------------YKSWKRRWF   64 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~---~~----------------~~~~~~~~~   64 (210)
                      .++.++|||.|+|+..+.|++|||||+++.|+||+++++..+ +.|....   +.                ....+.+++
T Consensus        12 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~~~l   91 (125)
T 1eaz_A           12 SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYV   91 (125)
T ss_dssp             CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEE
T ss_pred             CCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEeCCcEEEE
Confidence            578899999999999999999999999999999998877543 2322211   11                112234456


Q ss_pred             Eechh--HHHHHHhhhcCC
Q psy17820         65 ILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~~   81 (210)
                      .+++.  +..|+.+|..+.
T Consensus        92 ~a~s~~e~~~W~~al~~~i  110 (125)
T 1eaz_A           92 QADSPEEMHSWIKAVSGAI  110 (125)
T ss_dssp             ECSSHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHH
Confidence            56544  889999887643

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=98.49  Aligned_cols=76  Identities=16%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEe--CCEEEEEeecCCc---ccccc--cCCccee-----------cc-cceeEEE
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDK---SACLI--ENSSGRY-----------KS-WKRRWFI   65 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~--~~~L~Yy~~~~~~---~~~~i--~~~~~~~-----------~~-~~~~~~~   65 (210)
                      ..+.++|||.|+|+..++|++|||||+  ++.|+||+++.+.   ..+.|  ..+.+..           .+ .+.+++.
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~   85 (120)
T 2d9x_A            6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLR   85 (120)
T ss_dssp             SCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEEEC
T ss_pred             CCCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEecCCCCCEEEEEcCCCCEEEEE
Confidence            568899999999998999999999998  5899999988763   22333  2222211           11 1344555


Q ss_pred             echh--HHHHHHhhhcC
Q psy17820         66 LNDK--CLYYFEYTTDK   80 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~   80 (210)
                      +++.  +..|+.+|..+
T Consensus        86 a~s~~e~~~Wi~al~~~  102 (120)
T 2d9x_A           86 ATDAKERQHWVSRLQIC  102 (120)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            5543  88999888653

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.49  E-value=1e-13  Score=96.96  Aligned_cols=76  Identities=26%  Similarity=0.414  Sum_probs=54.4

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCc-ce-------------ecccceeEEEec
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSS-GR-------------YKSWKRRWFILN   67 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~-~~-------------~~~~~~~~~~~~   67 (210)
                      .++.++|||.|+|+..+.|++|||||+++.|+||+++++..+ +.|  ..+. +.             ..+.+.+++.++
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~r~~~l~a~   95 (126)
T 1fao_A           16 SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAK   95 (126)
T ss_dssp             CTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEETTEEEEEECS
T ss_pred             CCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEEeCCcEEEEECC
Confidence            567999999999999999999999999999999998877543 232  2222 11             112233445555


Q ss_pred             hh--HHHHHHhhhcC
Q psy17820         68 DK--CLYYFEYTTDK   80 (210)
Q Consensus        68 ~~--~~~~~~~i~~~   80 (210)
                      +.  +..|+.+|..+
T Consensus        96 s~~e~~~Wi~al~~~  110 (126)
T 1fao_A           96 TGVEADEWIKILRWK  110 (126)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            43  88999888754

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.49  E-value=7.9e-14  Score=96.69  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecC
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      ++++|||.|+|+..++|++|||||+++.|.||++++
T Consensus         6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~   41 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTAD   41 (120)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCC
T ss_pred             ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCC
Confidence            899999999999999999999999999999999875

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-13  Score=93.65  Aligned_cols=78  Identities=24%  Similarity=0.506  Sum_probs=54.9

Q ss_pred             CCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCcce-----------------ecccceeE
Q psy17820          5 FNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGR-----------------YKSWKRRW   63 (210)
Q Consensus         5 ~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~-----------------~~~~~~~~   63 (210)
                      .++.++|||.|+++ ..+.|++|||||+++.|+||+++++..+ +.|  ..+.+.                 ....+.++
T Consensus         9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~   88 (117)
T 2d9y_A            9 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYF   88 (117)
T ss_dssp             CCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEE
T ss_pred             CCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEE
Confidence            45779999999984 7899999999999999999998877653 222  222111                 11123345


Q ss_pred             EEechh--HHHHHHhhhcCCc
Q psy17820         64 FILNDK--CLYYFEYTTDKPF   82 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~~~   82 (210)
                      +.+++.  +..|+.+|..+..
T Consensus        89 l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           89 FSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             EECSSHHHHHHHHHHHHHTTC
T ss_pred             EEcCCHHHHHHHHHHHHHHHh
Confidence            555543  8999999987653

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.49  E-value=1.3e-13  Score=96.52  Aligned_cols=78  Identities=24%  Similarity=0.558  Sum_probs=55.3

Q ss_pred             CCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCccee----------------cc-cceeE
Q psy17820          5 FNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGRY----------------KS-WKRRW   63 (210)
Q Consensus         5 ~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~~----------------~~-~~~~~   63 (210)
                      .++.++|||.|+++ ..+.|++|||||+++.|+||+++++..+ +.|  ..+.+..                .+ .+.++
T Consensus        19 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~   98 (128)
T 2dkp_A           19 APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYY   98 (128)
T ss_dssp             SCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEE
T ss_pred             CCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEE
Confidence            45689999999998 7899999999999999999998877653 222  2222210                11 13445


Q ss_pred             EEechh--HHHHHHhhhcCCc
Q psy17820         64 FILNDK--CLYYFEYTTDKPF   82 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~~~   82 (210)
                      +.+++.  +..|+.+|..+..
T Consensus        99 l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           99 FCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             EECSSHHHHHHHHHHHHHHHS
T ss_pred             EEcCCHHHHHHHHHHHHHHHh
Confidence            555543  8999999976543

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.46  E-value=2.1e-13  Score=93.39  Aligned_cols=41  Identities=37%  Similarity=0.757  Sum_probs=37.2

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEE-eCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFIL-NDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL-~~~~L~Yy~~~~~~~   45 (210)
                      .++.++|||.|+|+..++|++||||| +++.|+||+++.+..
T Consensus         3 ~~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~   44 (112)
T 3aj4_A            3 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQN   44 (112)
T ss_dssp             CSCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTTCCS
T ss_pred             cceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCCCCC
Confidence            36789999999999999999999999 899999999988753

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.46  E-value=2.2e-13  Score=92.71  Aligned_cols=43  Identities=37%  Similarity=0.512  Sum_probs=37.9

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEeCC--EEEEEeecCCccc
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKSA   46 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~--~L~Yy~~~~~~~~   46 (210)
                      ..++.++|||.|+|+..++|++|||||+++  .|+||+++++..+
T Consensus         4 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~   48 (109)
T 2i5f_A            4 TGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP   48 (109)
T ss_dssp             CCCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSC
T ss_pred             cCceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCc
Confidence            467899999999999999999999999986  9999998876543

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.46  E-value=1.7e-13  Score=95.31  Aligned_cols=76  Identities=22%  Similarity=0.469  Sum_probs=53.5

Q ss_pred             CCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCccee----------------ccc-ceeEE
Q psy17820          6 NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGRY----------------KSW-KRRWF   64 (210)
Q Consensus         6 ~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~~----------------~~~-~~~~~   64 (210)
                      ++.++|||.|+|+ ..+.|++|||||+++.|+||+++++..+ +.|  ..+.+..                .+. +.+++
T Consensus        10 ~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l   89 (123)
T 1upq_A           10 PVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVL   89 (123)
T ss_dssp             CEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEE
T ss_pred             CceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEE
Confidence            4669999999996 7899999999999999999998877553 222  2222211                111 34455


Q ss_pred             Eechh--HHHHHHhhhcCC
Q psy17820         65 ILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~~   81 (210)
                      .+++.  +..|+.+|..+.
T Consensus        90 ~a~s~~e~~~Wi~al~~a~  108 (123)
T 1upq_A           90 AADTLEDLRGWLRALGRAS  108 (123)
T ss_dssp             ECSSHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHH
Confidence            55543  889999887654

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.46  E-value=1.7e-13  Score=100.70  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             CCCeeeEEEeeCCC-----CCCceeEEEEEeCCEEEEEeec
Q psy17820          6 NPDKEGWLWKQGGR-----YKSWKRRWFILNDKCLYYFEYT   41 (210)
Q Consensus         6 ~~~~~G~L~K~g~~-----~~~wkrRwfvL~~~~L~Yy~~~   41 (210)
                      +++++|||.|+|.+     .++||+|||||+++.|+||+++
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~   42 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYD   42 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEE
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecC
Confidence            57899999999753     5789999999999999999984

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=93.90  Aligned_cols=75  Identities=25%  Similarity=0.549  Sum_probs=52.3

Q ss_pred             CCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCccee-----------------cccceeEE
Q psy17820          6 NPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGRY-----------------KSWKRRWF   64 (210)
Q Consensus         6 ~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~~-----------------~~~~~~~~   64 (210)
                      ++.++|||.|+++ ..+.|++|||||+++.|+||+++++..+ +.|  ..+.+..                 ...+.+++
T Consensus        21 ~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l  100 (122)
T 2yry_A           21 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFF  100 (122)
T ss_dssp             CEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEE
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEE
Confidence            4679999999985 7899999999999999999998877553 222  2222210                 11233455


Q ss_pred             Eechh--HHHHHHhhhcC
Q psy17820         65 ILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~   80 (210)
                      .+++.  +..|+.+|..+
T Consensus       101 ~a~s~~e~~~Wi~al~~a  118 (122)
T 2yry_A          101 SAESPEEQEAWIQAMGEA  118 (122)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHH
Confidence            55443  88999988754

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.44  E-value=1.9e-13  Score=95.46  Aligned_cols=41  Identities=32%  Similarity=0.663  Sum_probs=36.3

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEe-CCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~-~~~L~Yy~~~~~~~   45 (210)
                      ..+.++|||.|+|+..++|+||||||+ ++.|.||+++.+..
T Consensus         6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~   47 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV   47 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSH
T ss_pred             CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCCCCC
Confidence            457899999999999999999999999 46999999887743

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.44  E-value=2.1e-13  Score=92.75  Aligned_cols=76  Identities=9%  Similarity=0.091  Sum_probs=52.4

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc--ccccC--Cccee-------------cc-cceeEEE
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA--CLIEN--SSGRY-------------KS-WKRRWFI   65 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~--~~i~~--~~~~~-------------~~-~~~~~~~   65 (210)
                      -.++.++|||.|+  ..++|+||||||+++.|+||+++.+...  +.|..  +.|..             .+ .+.+++.
T Consensus         5 ~~~~~~~G~L~K~--~~k~Wk~RwfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~F~i~~~~~r~~~l~   82 (107)
T 2cof_A            5 SSGLETSSYLNVL--VNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLE   82 (107)
T ss_dssp             CCCCTTCCEEEEE--ETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCBTTBSCEEEEEETTEEEEEEE
T ss_pred             CCCCcEeEEEEEe--cCCCcceEEEEEECCEEEEEeCCcccCCCeeEEeccceEEEECCCCCCCeEEEEEeCCCeEEEEE
Confidence            3578999999999  6899999999999999999998866322  22222  21211             11 2234555


Q ss_pred             echh--HHHHHHhhhcCC
Q psy17820         66 LNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~~   81 (210)
                      +++.  +..|+.+|..+.
T Consensus        83 A~s~~e~~~Wi~al~~~~  100 (107)
T 2cof_A           83 AKSSEEMGHWLGLLLSES  100 (107)
T ss_dssp             CSSHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            5544  889999997643

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.43  E-value=3.4e-13  Score=92.32  Aligned_cols=78  Identities=9%  Similarity=0.009  Sum_probs=54.6

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEeCC---EEEEEeecCCccc-cc--ccCCccee----------------cccce
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKSA-CL--IENSSGRY----------------KSWKR   61 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~---~L~Yy~~~~~~~~-~~--i~~~~~~~----------------~~~~~   61 (210)
                      -.++.++|||.|++. .+.|+||||||+++   +|+||++++|..+ +.  |..+.|..                ...+.
T Consensus         5 ~~~~~~~G~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~~~   83 (112)
T 2coc_A            5 SSGSLLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQS   83 (112)
T ss_dssp             CSSSSSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEE
T ss_pred             cCCceEEEEEEecCC-CCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEecCCeE
Confidence            357789999999865 88999999999985   7999999988654 22  33333331                11223


Q ss_pred             eEEEechh--HHHHHHhhhcCCc
Q psy17820         62 RWFILNDK--CLYYFEYTTDKPF   82 (210)
Q Consensus        62 ~~~~~~~~--~~~~~~~i~~~~~   82 (210)
                      +++.+++.  +..|+.+|..+..
T Consensus        84 y~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           84 WYLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHS
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhc
Confidence            45556554  9999999987543

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.43  E-value=2.2e-13  Score=92.31  Aligned_cols=40  Identities=25%  Similarity=0.642  Sum_probs=35.6

Q ss_pred             CCCeeeEEEeeCCCC----CCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          6 NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~----~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ++.++|||.|+|+..    +.|++|||||+++.|+||+++++..
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~   45 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ   45 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSS
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCC
Confidence            578999999998643    8999999999999999999988754

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.42  E-value=6.3e-13  Score=95.57  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             CCCCCCCeeeEEEeeCCCC----CCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCcce-------e----------c
Q psy17820          2 HTFFNPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGR-------Y----------K   57 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~g~~~----~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~-------~----------~   57 (210)
                      +.+.++.++|||.|+|+..    ++|++|||||+++.|+||+++++..+ +.|  ..+.+.       +          .
T Consensus        12 ~~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~   91 (148)
T 1u5f_A           12 QDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA   91 (148)
T ss_dssp             GGCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEEC
T ss_pred             hhCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEEC
Confidence            3457889999999999743    69999999999999999999887543 222  222221       1          1


Q ss_pred             cc-ceeEEEechh--HHHHHHhhhcCC
Q psy17820         58 SW-KRRWFILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        58 ~~-~~~~~~~~~~--~~~~~~~i~~~~   81 (210)
                      +. +.+++.+.+.  +..|+.+|..+.
T Consensus        92 ~~~r~~~l~a~s~~e~~~Wi~al~~~i  118 (148)
T 1u5f_A           92 PDKRIYQFTAASPKDAEEWVQQLKFIL  118 (148)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            11 3345555443  889999887654

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.42  E-value=7e-13  Score=90.92  Aligned_cols=74  Identities=16%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             CeeeEEEeeCC----CCCCceeEEEEEeCCEEEEEeecCCcccc-cc--cCCcce-----e------------cccceeE
Q psy17820          8 DKEGWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTDKSAC-LI--ENSSGR-----Y------------KSWKRRW   63 (210)
Q Consensus         8 ~~~G~L~K~g~----~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~-~i--~~~~~~-----~------------~~~~~~~   63 (210)
                      .++|||.|+++    ..++|++|||||+++.|+||+++++..+. .|  ....+.     +            .....++
T Consensus         1 tkeG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~   80 (112)
T 3cxb_B            1 TKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLE   80 (112)
T ss_dssp             CEEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEE
T ss_pred             CceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEE
Confidence            48999998755    57999999999999999999998876542 22  222211     1            1112344


Q ss_pred             EEechh--HHHHHHhhhcCC
Q psy17820         64 FILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~~   81 (210)
                      +++++.  ++.|+.+|+.+.
T Consensus        81 f~A~s~ee~~~Wi~ai~~~~  100 (112)
T 3cxb_B           81 LSAESEAEMAEWMQHLCQAV  100 (112)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHh
Confidence            555544  999999997643

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.41  E-value=5.5e-13  Score=90.22  Aligned_cols=35  Identities=17%  Similarity=0.518  Sum_probs=32.2

Q ss_pred             eeeEEEeeC--------CCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          9 KEGWLWKQG--------GRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         9 ~~G~L~K~g--------~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      ++|||.|++        +..++|++|||||+++.|+||+++++
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~   43 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKS   43 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHH
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcc
Confidence            589999999        67899999999999999999998864

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.39  E-value=8.9e-13  Score=92.47  Aligned_cols=42  Identities=38%  Similarity=0.514  Sum_probs=37.2

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEeCC--EEEEEeecCCcc
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKS   45 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~--~L~Yy~~~~~~~   45 (210)
                      ..++.++|||.|+|+..++|++|||||+++  .|+||+++++..
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~   58 (129)
T 1x05_A           15 RGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED   58 (129)
T ss_dssp             CSEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSS
T ss_pred             cCCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCc
Confidence            467889999999999999999999999976  999999886654

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.39  E-value=5.4e-13  Score=94.15  Aligned_cols=39  Identities=28%  Similarity=0.774  Sum_probs=34.9

Q ss_pred             CCCCeeeEEEee--CCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          5 FNPDKEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         5 ~~~~~~G~L~K~--g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      +++.++|||.|+  |+..++|+||||||+++.|+||+++.+
T Consensus         3 ~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d   43 (134)
T 2y7b_A            3 SSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDD   43 (134)
T ss_dssp             CCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHH
T ss_pred             CCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCc
Confidence            478999999999  778899999999999999999996544

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.38  E-value=1.3e-12  Score=106.61  Aligned_cols=44  Identities=80%  Similarity=1.596  Sum_probs=39.8

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ++.++.++|||.|+|+..++|+||||||++++|+||+++.+..+
T Consensus       209 ~f~~~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p  252 (347)
T 2r09_A          209 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP  252 (347)
T ss_dssp             CCCCCCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSC
T ss_pred             cccccccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCCccCC
Confidence            46788999999999999999999999999999999999877553

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.38  E-value=4.3e-13  Score=93.41  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=53.9

Q ss_pred             CCCCCeeeEEEeeCCC--------CCCceeEEEEEeCCEEEEEeecCCccc-------ccccC--Ccce---e-------
Q psy17820          4 FFNPDKEGWLWKQGGR--------YKSWKRRWFILNDKCLYYFEYTTDKSA-------CLIEN--SSGR---Y-------   56 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~--------~~~wkrRwfvL~~~~L~Yy~~~~~~~~-------~~i~~--~~~~---~-------   56 (210)
                      -.++.++|||.|++..        .++|++|||||+++.|+||+++.+...       ..|..  +.+.   +       
T Consensus         5 ~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~   84 (123)
T 1wjm_A            5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHV   84 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSE
T ss_pred             CCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCE
Confidence            3578999999999763        899999999999999999998876421       12222  1111   1       


Q ss_pred             ----cc-cceeEEEechh--HHHHHHhhhcCC
Q psy17820         57 ----KS-WKRRWFILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        57 ----~~-~~~~~~~~~~~--~~~~~~~i~~~~   81 (210)
                          .. .+.+++.+++.  +..|+.+|..+.
T Consensus        85 F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~  116 (123)
T 1wjm_A           85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI  116 (123)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence                11 13445666554  899999987654

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.37  E-value=8.4e-13  Score=100.43  Aligned_cols=44  Identities=27%  Similarity=0.508  Sum_probs=38.6

Q ss_pred             CCCCCCCeeeEEEeeCC----CCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          2 HTFFNPDKEGWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~g~----~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      +...++.++|||.|+|+    ..++|+||||||+++.|+||+++.+..
T Consensus       101 ~~l~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~  148 (211)
T 1u5e_A          101 QDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ  148 (211)
T ss_dssp             GGCSSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS
T ss_pred             hhcCCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc
Confidence            44567899999999997    368999999999999999999988754

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.37  E-value=6.7e-13  Score=95.61  Aligned_cols=76  Identities=20%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             CCCCeeeEEEeeCC------CCCCceeEEEEEeCC-----EEEEEeecC-Cccc-ccccC--Ccce-------------e
Q psy17820          5 FNPDKEGWLWKQGG------RYKSWKRRWFILNDK-----CLYYFEYTT-DKSA-CLIEN--SSGR-------------Y   56 (210)
Q Consensus         5 ~~~~~~G~L~K~g~------~~~~wkrRwfvL~~~-----~L~Yy~~~~-~~~~-~~i~~--~~~~-------------~   56 (210)
                      .++.++|||.|++.      ..+.|+||||||+++     .|.||+++. +..+ +.|..  +.+.             .
T Consensus        16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~~~~~~~~F~i~   95 (150)
T 1wg7_A           16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELK   95 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCCSSCTTEEEEE
T ss_pred             CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecCCCCCceEEEEE
Confidence            67899999999994      568999999999987     999999887 4432 33322  2211             1


Q ss_pred             cc-cceeEEEechh--HHHHHHhhhcC
Q psy17820         57 KS-WKRRWFILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        57 ~~-~~~~~~~~~~~--~~~~~~~i~~~   80 (210)
                      .. .+.+++.+++.  +..|+.+|..+
T Consensus        96 ~~~~r~~~l~A~s~~e~~~Wi~al~~a  122 (150)
T 1wg7_A           96 MQDKSSYLLAADSEVEMEEWITILNKI  122 (150)
T ss_dssp             CSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            11 24456666554  88898888653

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.36  E-value=1.4e-12  Score=91.43  Aligned_cols=35  Identities=31%  Similarity=0.609  Sum_probs=30.5

Q ss_pred             CCCeeeEEEeeCC--CCCCceeEEEEEeC-CEEEEEee
Q psy17820          6 NPDKEGWLWKQGG--RYKSWKRRWFILND-KCLYYFEY   40 (210)
Q Consensus         6 ~~~~~G~L~K~g~--~~~~wkrRwfvL~~-~~L~Yy~~   40 (210)
                      .+.++|||.|+++  ..++||+|||||++ +.|+||++
T Consensus         3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~   40 (128)
T 2rlo_A            3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPS   40 (128)
T ss_dssp             CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESS
T ss_pred             cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecc
Confidence            5789999999954  57999999999995 78999976

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.36  E-value=1.7e-12  Score=95.32  Aligned_cols=78  Identities=22%  Similarity=0.391  Sum_probs=46.3

Q ss_pred             CCCCeeeEEE----------eeCCCCCCceeEEEEEeCCEEEEEeecCC--cc-ccc--ccC--Ccc--e----------
Q psy17820          5 FNPDKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYFEYTTD--KS-ACL--IEN--SSG--R----------   55 (210)
Q Consensus         5 ~~~~~~G~L~----------K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~--~~-~~~--i~~--~~~--~----------   55 (210)
                      .++.++|||.          |+|+..++|++|||||+++.|+||+++.+  .. .+.  |..  +.+  .          
T Consensus         1 ~dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~F   80 (168)
T 2j59_M            1 SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVF   80 (168)
T ss_dssp             --CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEE
T ss_pred             CCCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEeccccCCCCCEE
Confidence            3689999999          67778899999999999999999999865  22 121  222  111  0          


Q ss_pred             --ecccceeEEEechh--HHHHHHhhhcCCc
Q psy17820         56 --YKSWKRRWFILNDK--CLYYFEYTTDKPF   82 (210)
Q Consensus        56 --~~~~~~~~~~~~~~--~~~~~~~i~~~~~   82 (210)
                        ....+.+++.+++.  +..|+.+|..+..
T Consensus        81 ~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           81 RLTTSDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             EEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence              11123345666554  9999999976543

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.35  E-value=1.3e-12  Score=103.96  Aligned_cols=42  Identities=36%  Similarity=0.684  Sum_probs=38.0

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ..|.++|||+|+|+..++|++|||||+++.|+||+++++..+
T Consensus       166 ~~p~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~  207 (291)
T 3tca_A          166 IVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTS  207 (291)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSST
T ss_pred             CCCceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccc
Confidence            467899999999999999999999999999999998877553

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.34  E-value=4e-12  Score=89.32  Aligned_cols=38  Identities=26%  Similarity=0.608  Sum_probs=32.6

Q ss_pred             CCCCeeeEEEee----CC--CCCCceeEEEEEeCCEEEEEeecC
Q psy17820          5 FNPDKEGWLWKQ----GG--RYKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         5 ~~~~~~G~L~K~----g~--~~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      .++.++|||.|+    +|  ..++|++|||||+++.|+||++++
T Consensus        10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~   53 (129)
T 2p0d_A           10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPP   53 (129)
T ss_dssp             CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC-
T ss_pred             cceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcc
Confidence            577899999996    44  348999999999999999999984

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.31  E-value=1.3e-11  Score=84.02  Aligned_cols=93  Identities=27%  Similarity=0.508  Sum_probs=75.0

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCe-EEEEec------CCCCcceEEEEeCCce
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREVH------DRHKPHCFELFTSGFE  169 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~-~v~~~~------~~~~~~~f~i~~~~~~  169 (210)
                      ..++++|||-+.+...+.|||+|++|....|.+|+++++..+...|+|..+ .|....      ....++||+|.+..  
T Consensus         6 s~vlkeGW~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~--   83 (125)
T 2coa_A            6 SGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN--   83 (125)
T ss_dssp             CSCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS--
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEEeCC--
Confidence            457899999999988889999999999999999999999999999999975 454442      22367999998864  


Q ss_pred             eeeeeecCCCCceeeecceEEEEEcC-----------CHHHHHHHHHHHhc
Q psy17820        170 FIKACKTDSEGKVVEGKHTVYRMSAA-----------TAEEKDEWIKCLSL  209 (210)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~r~~~l~a~-----------s~~e~~~Wi~al~~  209 (210)
                                        .+||..++           -.+.+..|..||++
T Consensus        84 ------------------~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrq  116 (125)
T 2coa_A           84 ------------------ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQ  116 (125)
T ss_dssp             ------------------CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHH
T ss_pred             ------------------eEEEEccCCCCCCCCcCccccHHHHHHHHHHHh
Confidence                              45665542           13679999999986

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.30  E-value=1.2e-11  Score=86.58  Aligned_cols=37  Identities=38%  Similarity=0.626  Sum_probs=33.8

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEe--CCEEEEEeec
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYT   41 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~--~~~L~Yy~~~   41 (210)
                      .++.++|||.|+|+..+.|+||||||+  ++.|+||+++
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~   54 (129)
T 1x1g_A           16 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPS   54 (129)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSS
T ss_pred             CCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCC
Confidence            567899999999999999999999999  3699999986

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.29  E-value=5.5e-12  Score=87.70  Aligned_cols=41  Identities=10%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             CCCCeeeEEEeeCC--------CCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~--------~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      .++.++|||.|++.        ..++|++|||||+++.|+||+++.+..
T Consensus         6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~   54 (122)
T 1dro_A            6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYK   54 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHH
T ss_pred             CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccc
Confidence            57889999999754        478999999999999999999988754

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.23  E-value=7.1e-12  Score=98.36  Aligned_cols=74  Identities=20%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCC-------EEEEEeecCC------cccccccCCcce------e-------
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDK-------CLYYFEYTTD------KSACLIENSSGR------Y-------   56 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~-------~L~Yy~~~~~------~~~~~i~~~~~~------~-------   56 (210)
                      ..+++.++|||.|+    ++||||||||+++       .|+||+++++      +..+.|....+.      +       
T Consensus         6 ~~~~v~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F   81 (264)
T 1qqg_A            6 GFSDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLV   81 (264)
T ss_dssp             ---CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEE
T ss_pred             CCCCccEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEE
Confidence            45788999999999    8999999999988       9999998876      233444332221      1       


Q ss_pred             ---cccceeEEEechh--HHHHHHhhhcC
Q psy17820         57 ---KSWKRRWFILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        57 ---~~~~~~~~~~~~~--~~~~~~~i~~~   80 (210)
                         .+.+.+++.+++.  +..|+.+|...
T Consensus        82 ~I~t~~rty~l~A~se~e~~~Wi~aL~~~  110 (264)
T 1qqg_A           82 ALYTRDEHFAIAADSEAEQDSWYQALLQL  110 (264)
T ss_dssp             EEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCHHHHHHHHHHHHHH
Confidence               1123345566553  89999988664

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.1e-10  Score=79.79  Aligned_cols=94  Identities=28%  Similarity=0.523  Sum_probs=75.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCe-EEEEec------CCCCcceEEEEeCCce
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREVH------DRHKPHCFELFTSGFE  169 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~-~v~~~~------~~~~~~~f~i~~~~~~  169 (210)
                      ..++++|||-+.+...+.|||+|++|....|.+|+++++..+...|+|..+ .|....      ....++||+|.+..  
T Consensus         6 s~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~--   83 (129)
T 2d9z_A            6 SGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDT--   83 (129)
T ss_dssp             TTSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECSS--
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEEEECC--
Confidence            356789999999988889999999999999999999999999999999985 343332      12346999998764  


Q ss_pred             eeeeeecCCCCceeeecceEEEEEcCC---------------HHHHHHHHHHHhcC
Q psy17820        170 FIKACKTDSEGKVVEGKHTVYRMSAAT---------------AEEKDEWIKCLSLH  210 (210)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~r~~~l~a~s---------------~~e~~~Wi~al~~~  210 (210)
                                        .+||..++.               .+.++.|..||+++
T Consensus        84 ------------------~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqA  121 (129)
T 2d9z_A           84 ------------------MVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQA  121 (129)
T ss_dssp             ------------------CEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHH
T ss_pred             ------------------EEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHh
Confidence                              467766532               69999999999863

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=103.30  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=53.5

Q ss_pred             CCCCeeeEEEee---CCCCCCceeEEEEEeCCEEEEEeecCCcccccc--cCCcceec-------------cc--ceeEE
Q psy17820          5 FNPDKEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKSACLI--ENSSGRYK-------------SW--KRRWF   64 (210)
Q Consensus         5 ~~~~~~G~L~K~---g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i--~~~~~~~~-------------~~--~~~~~   64 (210)
                      +.+.|+|||+|+   |+..++|+||||||+++.|+||++......+.|  ..+.|...             ++  +.+++
T Consensus       299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~~~~~~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l  378 (407)
T 4h8s_A          299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIIL  378 (407)
T ss_dssp             SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSCCCCBCSSCCEEEEECCTTCSSEEEEECTTSSCCEEE
T ss_pred             CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCCCeEEECCceEEEECCCCCCCceEEEEecCCCceEEE
Confidence            457899999998   556789999999999999999997766554443  33443211             11  22455


Q ss_pred             Eechh--HHHHHHhhhcC
Q psy17820         65 ILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~   80 (210)
                      ++++.  +..|+.+|..+
T Consensus       379 ~A~s~~e~~~Wi~ai~~a  396 (407)
T 4h8s_A          379 QAESRKENEEWICAINNI  396 (407)
T ss_dssp             ECSSSHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHH
Confidence            66554  88999988764

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.20  E-value=7.5e-11  Score=83.45  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCC-eEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLEN-IQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~-~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ...++.|+|.|+.+.  .|++|||+|.++...||-++.....+|.|+|.. +.+....    ...|.|.+++        
T Consensus        50 e~Ilk~G~v~KrkGl--~~kkR~liLT~~PrL~Yvdp~~~~~KGeIpls~~l~ve~k~----~~~F~I~Tp~--------  115 (151)
T 1w1g_A           50 NLILKMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKN----FKTFFVHTPN--------  115 (151)
T ss_dssp             CCEEEEEEEEEEETT--EEEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEESS----SSEEEEEETT--------
T ss_pred             CcEEEEEEEEecccC--cceeEEEEEcCCceEEEEcCccccccceEecCCCeeEEEcC----CCEEEEECCC--------
Confidence            356799999996653  399999999999888888888888999999986 4554433    2378887774        


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  |+|+|.+. ..+.++|+.||+.
T Consensus       116 ------------RtY~~~d~-~~~AqeWv~aI~~  136 (151)
T 1w1g_A          116 ------------RTYYLMDP-SGNAHKWCRKIQE  136 (151)
T ss_dssp             ------------EEEEEECT-TSCHHHHHHHHHH
T ss_pred             ------------ceEEEEcC-ccCHHHHHHHHHH
Confidence                        89999886 8899999999974

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.19  E-value=3e-11  Score=99.97  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=48.7

Q ss_pred             CCCCeeeEEEeeCCC--C-CCceeEEEEEeCCEEEEEeecCCcccccc--cCCccee-------------ccc--ceeEE
Q psy17820          5 FNPDKEGWLWKQGGR--Y-KSWKRRWFILNDKCLYYFEYTTDKSACLI--ENSSGRY-------------KSW--KRRWF   64 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~--~-~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i--~~~~~~~-------------~~~--~~~~~   64 (210)
                      +.+.++|||+|+|+.  . ++|+||||||+++.|+||++......+.|  ..+.+..             .+.  +.+++
T Consensus       276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~~~~~~~~i~l~~~~v~~~~~~~r~~~F~i~t~~~~~~~~l  355 (385)
T 2q13_A          276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMDIDNCSVMAVDCEDRRYCFQITSFDGKKSSIL  355 (385)
T ss_dssp             CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECSSCSSCEEEEECTTCEEEEECCTTCSSEEEEECTTSCBCCCE
T ss_pred             CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCCCcCCCceEEccceEEEeccccCCCceEEEEeCCCCeEEEE
Confidence            367999999999874  3 47999999999999999998432222233  2333211             112  34455


Q ss_pred             Eechh--HHHHHHhhhcC
Q psy17820         65 ILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~   80 (210)
                      .+++.  +..|+.+|...
T Consensus       356 ~A~s~~e~~~Wi~ai~~~  373 (385)
T 2q13_A          356 QAESKKDHEEWICTINNI  373 (385)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHH
Confidence            66554  99999999764

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.13  E-value=7.6e-11  Score=92.47  Aligned_cols=77  Identities=19%  Similarity=0.343  Sum_probs=50.5

Q ss_pred             CCCCeeeEEE--------eeCCC----CCCceeEEEEEeCCEEEEEeecC------Cccc-ccc--cCCcce---ec---
Q psy17820          5 FNPDKEGWLW--------KQGGR----YKSWKRRWFILNDKCLYYFEYTT------DKSA-CLI--ENSSGR---YK---   57 (210)
Q Consensus         5 ~~~~~~G~L~--------K~g~~----~~~wkrRwfvL~~~~L~Yy~~~~------~~~~-~~i--~~~~~~---~~---   57 (210)
                      ..+.++|||.        |+|+.    .++|++|||||+++.|+||++++      +..+ +.|  ..+.+.   +.   
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kk   88 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKK   88 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSSC
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcCCCC
Confidence            4678999999        66665    89999999999999999999852      2222 223  223221   11   


Q ss_pred             ---------ccceeEEEechh--HHHHHHhhhcCC
Q psy17820         58 ---------SWKRRWFILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        58 ---------~~~~~~~~~~~~--~~~~~~~i~~~~   81 (210)
                               ..+.+++.+++.  +..|+.+|..+.
T Consensus        89 ~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~  123 (263)
T 3a8p_A           89 EHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSAC  123 (263)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence                     123344555544  889999886543

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.09  E-value=3.8e-10  Score=78.23  Aligned_cols=35  Identities=31%  Similarity=0.687  Sum_probs=29.3

Q ss_pred             CeeeEEEe-----eCC--CCCCceeEEEEEeCCEEEEEeecC
Q psy17820          8 DKEGWLWK-----QGG--RYKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         8 ~~~G~L~K-----~g~--~~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      .++|+|.+     +|+  ..++|+||||||+++.|+||+...
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~   43 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKS   43 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSS
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccc
Confidence            57888885     466  368999999999999999999664

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.08  E-value=4e-10  Score=78.45  Aligned_cols=40  Identities=30%  Similarity=0.589  Sum_probs=31.9

Q ss_pred             CCCCeeeEEEee-----CC--CCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          5 FNPDKEGWLWKQ-----GG--RYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         5 ~~~~~~G~L~K~-----g~--~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      ..+.++|||.++     |.  ..++|++|||||+++.|+||+++++.
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~   52 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTS   52 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccc
Confidence            468899999987     32  34699999999999999999987664

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=98.98  E-value=2.6e-10  Score=95.86  Aligned_cols=40  Identities=33%  Similarity=0.679  Sum_probs=35.1

Q ss_pred             CCCeeeEEEeeCCCCCCceeEEEEEe-CCEEEEEeecCCcc
Q psy17820          6 NPDKEGWLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTDKS   45 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~~~wkrRwfvL~-~~~L~Yy~~~~~~~   45 (210)
                      .++|+|||.|+|+..++||+|||||+ ++.|.||+++.+..
T Consensus         5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~   45 (446)
T 4ejn_A            5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV   45 (446)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC---
T ss_pred             eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCCCCC
Confidence            57899999999999999999999997 89999999998765

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=98.98  E-value=2e-09  Score=83.59  Aligned_cols=41  Identities=27%  Similarity=0.410  Sum_probs=36.2

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ..|..+|||++++.+.+.|+||||+|+++.|+||++.+.+.
T Consensus       130 ~~P~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~  170 (256)
T 3hk0_A          130 SSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAA  170 (256)
T ss_dssp             SCEEEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTTCCC
T ss_pred             CCCcceeEEEEecCCCCcceEEEEEEeCCEEEEEecCCCCc
Confidence            45678999999999899999999999999999999776554

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=98.97  E-value=1.1e-09  Score=75.45  Aligned_cols=37  Identities=27%  Similarity=0.680  Sum_probs=32.3

Q ss_pred             CeeeEEEe--eCCCCC-CceeEEEEEeCCEEEEEeecCCc
Q psy17820          8 DKEGWLWK--QGGRYK-SWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         8 ~~~G~L~K--~g~~~~-~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      .++|||.+  +|+..+ +|+||||||+++.|+||+++.++
T Consensus         2 ~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~   41 (117)
T 2rov_A            2 RLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDK   41 (117)
T ss_dssp             CSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHH
T ss_pred             ceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCc
Confidence            46999996  878778 99999999999999999987653

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=98.96  E-value=1.3e-09  Score=85.71  Aligned_cols=41  Identities=37%  Similarity=0.724  Sum_probs=31.8

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ..|..+|||++++.+.+.|+||||||+++.|+||++.+.+.
T Consensus       156 ~~pe~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~  196 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKV  196 (281)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSCEEEC-------
T ss_pred             CCCccEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCCCc
Confidence            45779999999999999999999999999999999876554

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=3e-09  Score=73.99  Aligned_cols=76  Identities=9%  Similarity=0.178  Sum_probs=53.8

Q ss_pred             CCCCeeeEEEeeCC---CCCCceeEEEEEeCCEEEEEeecCCc--cc-cc--ccCCcceec------------------c
Q psy17820          5 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDK--SA-CL--IENSSGRYK------------------S   58 (210)
Q Consensus         5 ~~~~~~G~L~K~g~---~~~~wkrRwfvL~~~~L~Yy~~~~~~--~~-~~--i~~~~~~~~------------------~   58 (210)
                      ..|..++||-.++.   ..++||||||||+++.|+||++..+.  +| +.  |..+.|...                  .
T Consensus         7 ~~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g   86 (137)
T 2ys3_A            7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEG   86 (137)
T ss_dssp             SCCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSS
T ss_pred             CCcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhccCCCceEEECCCCEEeccccccCCceEEEEEccCCCC
Confidence            46889999999877   46789999999999999999988884  33 23  334443211                  1


Q ss_pred             cceeEEEechh--HHHHHHhhhcC
Q psy17820         59 WKRRWFILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~i~~~   80 (210)
                      .+.+++.++++  ...|+.+++-+
T Consensus        87 ~r~y~l~cdsEeqy~~WMaA~rlA  110 (137)
T 2ys3_A           87 MSEIYLRCQDEQQYARWMAGCRLA  110 (137)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHHHHh
Confidence            13355566554  88999988654

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.78  E-value=1.6e-08  Score=71.64  Aligned_cols=32  Identities=28%  Similarity=0.586  Sum_probs=31.1

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEe
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFE   39 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~   39 (210)
                      .|+|||+|+++..+.|++|||||+++.|+|++
T Consensus         2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~   33 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSE   33 (150)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECC
T ss_pred             CcceEEEeecCCCCCceEeEEEEECCEEEEEe
Confidence            68999999999999999999999999999998

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=98.68  E-value=9e-08  Score=68.29  Aligned_cols=72  Identities=8%  Similarity=0.252  Sum_probs=49.3

Q ss_pred             CCeeeEEEeeCC---CCCCceeEEEEEeCCEEEEEeecCC--cccc---cccCCcceec------------------ccc
Q psy17820          7 PDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTD--KSAC---LIENSSGRYK------------------SWK   60 (210)
Q Consensus         7 ~~~~G~L~K~g~---~~~~wkrRwfvL~~~~L~Yy~~~~~--~~~~---~i~~~~~~~~------------------~~~   60 (210)
                      |..++||.....   ..|+|||||||++|+.|+|||++.+  .+|.   .+..++|...                  .-.
T Consensus        47 PeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~  126 (173)
T 4f7h_A           47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMN  126 (173)
T ss_dssp             TCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEE
T ss_pred             hhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhcCCCceEEecCceEEeccccccccceeEEEeccCCCCcc
Confidence            567899977554   5799999999999999999999988  3332   2455555311                  112


Q ss_pred             eeEEEechh--HHHHHHhhh
Q psy17820         61 RRWFILNDK--CLYYFEYTT   78 (210)
Q Consensus        61 ~~~~~~~~~--~~~~~~~i~   78 (210)
                      +.|+.++++  ...|+.+.+
T Consensus       127 e~~Lrcd~E~qya~WMAAcr  146 (173)
T 4f7h_A          127 EIWLRCDNEKQYAHWMAACR  146 (173)
T ss_dssp             EEEEEESSHHHHHHHHHHHH
T ss_pred             eeeeecCCHHHHHHHHHHhh
Confidence            345555554  778887664

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-07  Score=64.72  Aligned_cols=79  Identities=16%  Similarity=0.031  Sum_probs=51.0

Q ss_pred             CCCCeeeEEEeeCC--CCCCceeEEEEEeCC------EEEEEeecCCc-----ccccccCCcc--------e--------
Q psy17820          5 FNPDKEGWLWKQGG--RYKSWKRRWFILNDK------CLYYFEYTTDK-----SACLIENSSG--------R--------   55 (210)
Q Consensus         5 ~~~~~~G~L~K~g~--~~~~wkrRwfvL~~~------~L~Yy~~~~~~-----~~~~i~~~~~--------~--------   55 (210)
                      .+++|+|||+++..  ..+.||||||||..+      .|-||+++...     ...+|...++        .        
T Consensus        10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~   89 (127)
T 2d9w_A           10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTS   89 (127)
T ss_dssp             CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCE
T ss_pred             CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcce
Confidence            46889999999984  556799999999643      89999987552     1334443332        1        


Q ss_pred             ----ecccceeEEEech-hHHHHHHhhhcCCcc
Q psy17820         56 ----YKSWKRRWFILND-KCLYYFEYTTDKPFK   83 (210)
Q Consensus        56 ----~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   83 (210)
                          +.+.+.+.+++++ ++.+|+.+|-...|.
T Consensus        90 aF~l~T~er~~~laAe~~E~~~Wi~~ic~~aF~  122 (127)
T 2d9w_A           90 AFFLETKERLYLLAAPAAERGDWVQAICLLAFS  122 (127)
T ss_dssp             EEEEEESSCEEEEEECHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCcEEEEEeCcHHHHHHHHHHHHHhcC
Confidence                1111222344443 388999988765543

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.66  E-value=1.1e-07  Score=64.71  Aligned_cols=41  Identities=24%  Similarity=0.483  Sum_probs=38.5

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      +.++++||+.+.+...+.|||+|++|+...|.||.++.+..
T Consensus         6 s~vlkeGW~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~   46 (125)
T 2coa_A            6 SGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR   46 (125)
T ss_dssp             CSCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCc
Confidence            67899999999999999999999999999999999988865

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.54  E-value=2.8e-07  Score=64.25  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=69.4

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC---CCCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT---DKEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIK  172 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~---~~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~  172 (210)
                      .++...|-+..+.+..+.-+.|+|+|-++.|.|.+...   .-.-.|.++|.+..|...++. +.+++|+|..+..    
T Consensus        26 G~ii~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~----  101 (132)
T 1v61_A           26 GNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTV----  101 (132)
T ss_dssp             CCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSS----
T ss_pred             CCeEEEeeEEEEEcccCcceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeEEEeccccccCccEEEEecCCC----
Confidence            34555555554443334457899999998888777543   234578899999888766553 6789999986532    


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     +++.+.|.|.+|++.|+.+|+.
T Consensus       102 ---------------~~i~v~~~s~eE~~~Wl~~L~~  123 (132)
T 1v61_A          102 ---------------ERIVVHCNNNQDFQEWMEQLNR  123 (132)
T ss_dssp             ---------------CEEEECCCCSHHHHHHHHHHHH
T ss_pred             ---------------ceEEEEeCCHHHHHHHHHHHHH
Confidence                           5899999999999999999975

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=98.54  E-value=1e-07  Score=74.78  Aligned_cols=39  Identities=23%  Similarity=0.412  Sum_probs=30.4

Q ss_pred             CCCCeeeEEEee-----CC-------CCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          5 FNPDKEGWLWKQ-----GG-------RYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         5 ~~~~~~G~L~K~-----g~-------~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      ..+.++|||.++     +.       ..+.|++|||||+++.|+||+++..
T Consensus         9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~   59 (279)
T 3a8n_A            9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGR   59 (279)
T ss_dssp             -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--
T ss_pred             CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccc
Confidence            357899999653     21       4689999999999999999998864

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=98.50  E-value=3.3e-07  Score=64.73  Aligned_cols=39  Identities=23%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             CCCeeeEEEeeCC---CCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          6 NPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         6 ~~~~~G~L~K~g~---~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      .|..+|||...+.   ..|+|||||||++|..|+|||++.|.
T Consensus        25 iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~   66 (165)
T 4bbk_A           25 IPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELE   66 (165)
T ss_dssp             -CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGT
T ss_pred             ChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHh
Confidence            4678899987654   57999999999999999999999884

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.38  E-value=5.7e-06  Score=56.25  Aligned_cols=91  Identities=21%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             CcceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCCC----CceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeee
Q psy17820         99 PDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDK----EPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIK  172 (210)
Q Consensus        99 ~~~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~~----~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~  172 (210)
                      .+++|-|.+.... .+.=++++|.|=++.|.|-......    .....++|.+..|..+++. .-+++|.|....     
T Consensus         8 lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~~~~n~f~i~~~~-----   82 (113)
T 1zc3_B            8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFP-----   82 (113)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEETT-----
T ss_pred             EEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECCCCcccceEEEEEeCC-----
Confidence            3568888877642 2334567888877787776643221    2344578999888887664 468899988653     


Q ss_pred             eeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     +++.++|+|.+|+.+|+.+|++
T Consensus        83 ---------------~s~~~~aes~~eK~~Wl~~~~~  104 (113)
T 1zc3_B           83 ---------------ESRIFQAENAKIKREWLEVLEE  104 (113)
T ss_dssp             ---------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------------ceEEEEcCCHHHHHHHHHHHHH
Confidence                           5899999999999999999975

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.35  E-value=6.5e-06  Score=61.64  Aligned_cols=88  Identities=18%  Similarity=0.342  Sum_probs=65.3

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeC------C-EEEEeccCCC----CCceeEEEeCCe-EEEEecC-CCCcceEEEEe
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILND------K-CLYYFEYTTD----KEPRGIIPLENI-QVREVHD-RHKPHCFELFT  165 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~------~-~L~yy~~~~~----~~~~~~i~L~~~-~v~~~~~-~~~~~~f~i~~  165 (210)
                      ...+|+...+.+  |.||+|||||+.      - .|..|++..+    ..++..+.|.++ .++..-. .+..+++.|+.
T Consensus         9 ~v~eg~vk~r~~--KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAIIc   86 (224)
T 3ml4_A            9 ALVEGQVKLRDG--KKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIIC   86 (224)
T ss_dssp             CSEEEEEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeEEEeeeeecC--CceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcccEEEEEe
Confidence            457899877664  599999999963      2 6779987655    456888999875 3444322 35578888887


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      .+                    .++.|++||++++..|-..|+
T Consensus        87 ~d--------------------~~~vLAFds~e~l~~W~~~l~  109 (224)
T 3ml4_A           87 LS--------------------QAVMLGFDSHEAMCAWDTRIR  109 (224)
T ss_dssp             SS--------------------CEEEEECSSHHHHHHHHHHHH
T ss_pred             cC--------------------cEEEEEeCCHHHHHHHHHHHh
Confidence            75                    378999999999999998876

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=98.32  E-value=2.1e-06  Score=60.74  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=31.9

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ..+++.|+|+|+.|..  |++|||+|+++-..||-++....
T Consensus        50 e~Ilk~G~v~KrkGl~--~kkR~liLT~~PrL~Yvdp~~~~   88 (151)
T 1w1g_A           50 NLILKMGPVDKRKGLF--ARRRQLLLTEGPHLYYVDPVNKV   88 (151)
T ss_dssp             CCEEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTTTE
T ss_pred             CcEEEEEEEEecccCc--ceeEEEEEcCCceEEEEcCcccc
Confidence            4578999999976633  99999999999888888887654

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.24  E-value=1.1e-05  Score=55.32  Aligned_cols=93  Identities=22%  Similarity=0.312  Sum_probs=67.6

Q ss_pred             cCCcceeeEEeecC--------ccCCeeEEEEEEeC------CEEEEeccCCCCCceeEEEeCCeE-EEEec---CCCCc
Q psy17820         97 FNPDKEGWLWKQGG--------RYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLENIQ-VREVH---DRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~--------~~~~wk~r~fvL~~------~~L~yy~~~~~~~~~~~i~L~~~~-v~~~~---~~~~~  158 (210)
                      .+..++|-|.-..+        ....|.+++++|..      -.|-||..++...|+..|++..+. |....   =+++.
T Consensus        16 ~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LEmPD~~   95 (136)
T 1v5m_A           16 VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKD   95 (136)
T ss_dssp             CSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCT
T ss_pred             ceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccccCCcc
Confidence            45678898865421        33589999999952      356699999899999999988652 21111   12466


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHh
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS  208 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~  208 (210)
                      +.|.|...+.                   -.|+|.|.++.++++|+..|+
T Consensus        96 nTFVlK~~n~-------------------~eyi~ea~d~~q~~sWla~Ir  126 (136)
T 1v5m_A           96 NTFVLKVENG-------------------AEYILETIDSLQKHSWVADIQ  126 (136)
T ss_dssp             TEECCBCTTS-------------------CBEEEECSSHHHHHHHHHHHH
T ss_pred             ceEEEEecCC-------------------cEEEEEcCCHHHHHHHHHHHH
Confidence            7888765542                   489999999999999999986

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=6.2e-06  Score=56.35  Aligned_cols=41  Identities=29%  Similarity=0.518  Sum_probs=37.9

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      +.++|+||+.+.+.....|||+|++|+..+|.+|.++.+..
T Consensus         6 s~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k   46 (129)
T 2d9z_A            6 SGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSK   46 (129)
T ss_dssp             TTSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSSCCS
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCc
Confidence            57899999999999889999999999999999999987755

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.08  E-value=7.1e-05  Score=52.30  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=62.3

Q ss_pred             CeeEEEEEEeCCEEEEeccC------CCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCCCCceeeecc
Q psy17820        114 SWKRRWFILNDKCLYYFEYT------TDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKH  187 (210)
Q Consensus       114 ~wk~r~fvL~~~~L~yy~~~------~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~  187 (210)
                      +-+.|+|.|=++.|.|-+..      ........++|.+..|...++..-+++|.|..+..+.              ...
T Consensus        32 g~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e~~p~~~~l~s~~~G~--------------~~k   97 (140)
T 3qwm_A           32 GLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQYYPNGIRLTSSVPGA--------------DIK   97 (140)
T ss_dssp             TTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCSSCTTEEEEEECCTTS--------------CCE
T ss_pred             cccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCCCCceEEEEEecCCCC--------------cce
Confidence            45788888888888777511      1245678899999999888777789999999764210              012


Q ss_pred             eEEEEEcCCHHHHHHHHHHHhc
Q psy17820        188 TVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       188 r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.+.|.|+|..|+..|+.+|+.
T Consensus        98 ~~i~~~A~s~~ER~rwi~dL~e  119 (140)
T 3qwm_A           98 VLINFNAPNPQDRKKFTDDLRE  119 (140)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHH
Confidence            5799999999999999999974

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.02  E-value=4.5e-05  Score=63.73  Aligned_cols=91  Identities=29%  Similarity=0.394  Sum_probs=65.5

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC--CceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK--EPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~--~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~  174 (210)
                      ...+++|.|.+..+  +.++.|++.|-++.|.+.+...+.  ...+.|+|.++.+....+.+.+++|.|..+.       
T Consensus       242 r~li~~g~l~~~~~--~~~~~r~~fLF~d~Ll~~k~~~~~~y~~k~~i~L~~l~v~~~~~~~~~~~f~i~~~~-------  312 (434)
T 3mpx_A          242 REFLKEGTLMKVTG--KNRRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVANMKVSRPVMEKVPYALKIETSE-------  312 (434)
T ss_dssp             CCEEECCEEEEEET--TEEEEEEEEEESSEEEEEEECTTSCEEEEEEEEC-----CCCCCTTSCSEEEEECSS-------
T ss_pred             cceEecceEEEEeC--CCceEEEEEEECCEEEEEEecCCCeEEEEEEEEcCCcEEEecCCCCCCeeEEEecCC-------
Confidence            34467899887654  346889999999999988754332  3467788888877654445668899986553       


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   +.|.|+|.|++++..|+.+|++
T Consensus       313 -------------~~~~l~a~s~~ek~~W~~~i~~  334 (434)
T 3mpx_A          313 -------------SCLMLSASSCAERDEWYGCLSR  334 (434)
T ss_dssp             -------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------eEEEEecCCHHHHHHHHHHHHH
Confidence                         5899999999999999999975

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.02  E-value=5.4e-05  Score=67.34  Aligned_cols=97  Identities=25%  Similarity=0.493  Sum_probs=73.5

Q ss_pred             CcceeeEEeec-Cc-cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC--CCcceEEEEeCCceeeeee
Q psy17820         99 PDKEGWLWKQG-GR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        99 ~~~~G~L~k~~-~~-~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~--~~~~~f~i~~~~~~~~~~~  174 (210)
                      ++..|||.... +. .++-+..||||....|.+|++++....+..++|.+..+..+...  ++++.|.|..+++      
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  613 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQ------  613 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTS------
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccccccccccchhhhccccccccccccCCcc------
Confidence            56789999865 22 23678999999999999999988777788899998887776653  5678899988764      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHH
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL  207 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al  207 (210)
                            ..+....+.+.|+|++.++.+.|...+
T Consensus       614 ------~~~~~~~~~~~l~~~~~~~~~~~~~~~  640 (772)
T 3zvr_A          614 ------RNVYKDYRQLELACETQEEVDSWKASF  640 (772)
T ss_dssp             ------SCSBTTBSEEEEEESSHHHHHHHHHHH
T ss_pred             ------ccccchhhhhhhhccccccchhhHHhh
Confidence                  233445679999999999999998876

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=97.93  E-value=0.00016  Score=59.79  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             ccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC----CCceeEEEeCCeEEEEecCCC-------CcceEE
Q psy17820         94 HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD----KEPRGIIPLENIQVREVHDRH-------KPHCFE  162 (210)
Q Consensus        94 ~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~----~~~~~~i~L~~~~v~~~~~~~-------~~~~f~  162 (210)
                      ......+++|.|.+..+..+..+.|+|.|=++.|.+-+....    ....+.|+|.++.|...++..       .+++|.
T Consensus       252 ~~~r~Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~  331 (402)
T 2dfk_A          252 DRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFK  331 (402)
T ss_dssp             GTCCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEE
T ss_pred             ccccceEEeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEE
Confidence            334556788999877653345788999999998888775421    124577999998887765431       246888


Q ss_pred             EEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        163 LFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       163 i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |....+                  ...|.|+|.|.+++..|+.+|+.
T Consensus       332 i~~~~~------------------~~~~~l~a~s~~eK~~Wi~~i~~  360 (402)
T 2dfk_A          332 LHNKET------------------EEVHLFFAKKLEEKIRWLRAFRE  360 (402)
T ss_dssp             EEESSS------------------SCEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECCC------------------CeEEEEEeCCHHHHHHHHHHHHH
Confidence            876532                  35899999999999999999974

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=97.86  E-value=0.00011  Score=59.66  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=68.4

Q ss_pred             ccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-----------CCceeEEEeCCeEEEEecCC-CCcceEEE
Q psy17820         96 FFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-----------KEPRGIIPLENIQVREVHDR-HKPHCFEL  163 (210)
Q Consensus        96 ~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-----------~~~~~~i~L~~~~v~~~~~~-~~~~~f~i  163 (210)
                      ....+++|.|.+.|    .++.|++.|=++.|.+.+....           -..++.|+|.++.|...++. ..+++|.|
T Consensus       244 ~r~li~eG~l~~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~~~~~~F~i  319 (354)
T 1dbh_A          244 CNEFIMEGTLTRVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEI  319 (354)
T ss_dssp             CCCEEEEEEEEETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEE
T ss_pred             cceEEEEeeEEEEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCcccccCccEEE
Confidence            34556788887773    4578899998888887775421           11357899999888876554 45789999


Q ss_pred             EeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...++                   ..|.|+|.|.+++..|+.+|+.
T Consensus       320 ~~~~~-------------------~~~~l~a~s~~ek~~W~~~i~~  346 (354)
T 1dbh_A          320 ILKDE-------------------NSVIFSAKSAEEKNNWMAALIS  346 (354)
T ss_dssp             CCTTS-------------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ecCCC-------------------CEEEEEeCCHHHHHHHHHHHHH
Confidence            76531                   5899999999999999999974

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.84  E-value=0.00027  Score=59.62  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             ccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC----CCceeEEEeCCeEEEEecCC-------CCcceEEEE
Q psy17820         96 FFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD----KEPRGIIPLENIQVREVHDR-------HKPHCFELF  164 (210)
Q Consensus        96 ~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~----~~~~~~i~L~~~~v~~~~~~-------~~~~~f~i~  164 (210)
                      ....+++|.|.+.....+..+.|+|.|=++.|.+.+....    ...++.|+|.++.|....+.       ..+++|.|.
T Consensus       331 ~r~li~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~  410 (466)
T 2pz1_A          331 SSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLH  410 (466)
T ss_dssp             CSCEEEEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEE
T ss_pred             cceeEEeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEE
Confidence            3456788998877653446789999999999988775421    12457799999888776543       235788887


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ....                  ...|.|+|.|.+++..|+.+|+.
T Consensus       411 ~~~~------------------~~~~~l~a~s~~eK~~W~~~i~~  437 (466)
T 2pz1_A          411 RGAT------------------GDSHLLCTRKPEQKQRWLKAFAR  437 (466)
T ss_dssp             CSSS------------------CCEEEEEESSHHHHHHHHHHHHH
T ss_pred             eCCC------------------CeEEEEEeCCHHHHHHHHHHHHH
Confidence            6532                  35899999999999999999974

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=97.75  E-value=0.00019  Score=59.46  Aligned_cols=95  Identities=23%  Similarity=0.273  Sum_probs=67.4

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-CCceeEEEeCCeEEEEecCC-----CCcceEEEEeCCcee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDR-----HKPHCFELFTSGFEF  170 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~~v~~~~~~-----~~~~~f~i~~~~~~~  170 (210)
                      ....++|.|.......+..+.|++.|=++.|.+-+.... ...+..|+|..+.|...++.     .-++.|.|....+  
T Consensus       232 grli~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~--  309 (406)
T 2vrw_B          232 GRPKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQG--  309 (406)
T ss_dssp             CSEEEEEEEEEECSSCCSCEEEEEEEESSEEEEEEEETTEEEEEEEEETTTEEEEC--------CTTCEEEEEEETTC--
T ss_pred             CcccccccEEEEecCCCccceEEEEecCCEEEEEEecCCceEEEEEecccceeeeecCCCCccCCccceeeEEEecCC--
Confidence            345678998877544456789999999888887765432 22456788888887665433     2357888876432  


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                      .+.|.|.|.|.++++.|+.+|+.
T Consensus       310 ----------------~~~~~l~a~s~~ek~~W~~~i~~  332 (406)
T 2vrw_B          310 ----------------AQGYELFFKTRELKKKWMEQFEM  332 (406)
T ss_dssp             ----------------SCEEEEEESSHHHHHHHHHHHHH
T ss_pred             ----------------CceEEEeCCCHHHHHHHHHHHHH
Confidence                            35899999999999999999974

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.72  E-value=0.0005  Score=47.75  Aligned_cols=90  Identities=19%  Similarity=0.329  Sum_probs=57.4

Q ss_pred             ceee-EEeecCccCCeeEEEEEEeCC-EEEEeccC-C-CCCceeEEEeCCeEE-EEec----------CCCCcceEEEEe
Q psy17820        101 KEGW-LWKQGGRYKSWKRRWFILNDK-CLYYFEYT-T-DKEPRGIIPLENIQV-REVH----------DRHKPHCFELFT  165 (210)
Q Consensus       101 ~~G~-L~k~~~~~~~wk~r~fvL~~~-~L~yy~~~-~-~~~~~~~i~L~~~~v-~~~~----------~~~~~~~f~i~~  165 (210)
                      ..|- |.|-+... .-+.|+|.|..+ .+.++.+. . .....+.|+|..+.- ....          +.....||.|+.
T Consensus        14 ~~Gt~l~K~~~~~-~~k~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy   92 (131)
T 1mai_A           14 LKGSQLLKVKSSS-WRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVF   92 (131)
T ss_dssp             HHCEEEEEESSSS-CEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEE
T ss_pred             HcCCeEEEECCCC-cceeEEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEE
Confidence            3455 44444322 127788998754 34455321 1 234678899998643 3332          112456898887


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+.                  .+++.|.|+|+++.+.|+.+|+.
T Consensus        93 ~~~------------------~k~LdlvA~s~~e~~~Wv~gL~~  118 (131)
T 1mai_A           93 KDQ------------------RNTLDLIAPSPADAQHWVQGLRK  118 (131)
T ss_dssp             SSS------------------CCCEEEECSSHHHHHHHHHHHHH
T ss_pred             CCC------------------CceEEEEeCCHHHHHHHHHHHHH
Confidence            642                  26899999999999999999974

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=97.66  E-value=0.00022  Score=52.65  Aligned_cols=94  Identities=19%  Similarity=0.309  Sum_probs=62.9

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCC-------ceeEEEeCCeEEEEecCCCCcceEEEEeCCce
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE-------PRGIIPLENIQVREVHDRHKPHCFELFTSGFE  169 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~-------~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~  169 (210)
                      ...+++|-|..+... +.++.+|++|=++.|.+-....+.-       ...+|.|..+.|..+...  +..|.++.... 
T Consensus        69 R~Ll~eG~L~~k~~~-~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~d--~~~~fli~~~~-  144 (185)
T 2lg1_A           69 KKLVRDGSVFLKNAA-GRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE--EKGLFLISMGM-  144 (185)
T ss_dssp             SCEEEEEEEEEECTT-CCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECCSSC--SSEEEEECCSS-
T ss_pred             CceeeeceEEEeccC-CCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEeccCCC--CCeEEEEEecC-
Confidence            566789999865532 3689999999888777654321110       124678888877655442  33555554321 


Q ss_pred             eeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        170 FIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     .+.+.|.|.|.|.+|+..|+.+|+.
T Consensus       145 ---------------~g~~~yel~a~s~~er~~W~~~I~~  169 (185)
T 2lg1_A          145 ---------------TDPEMVEVHASSKEERNSWIQIIQD  169 (185)
T ss_dssp             ---------------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------------CCCeEEEEEcCCHHHHHHHHHHHHH
Confidence                           0136899999999999999999874

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=97.60  E-value=0.00041  Score=60.22  Aligned_cols=94  Identities=23%  Similarity=0.297  Sum_probs=69.0

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-CCceeEEEeCCeEEEEecCC-----CCcceEEEEeCCceee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDR-----HKPHCFELFTSGFEFI  171 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~~v~~~~~~-----~~~~~f~i~~~~~~~~  171 (210)
                      ..+++|.|.+.....+..+.|++.|=++.|.+-+.... ...+..|+|.++.|....+.     .-+++|.|....+   
T Consensus       405 rll~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~---  481 (587)
T 3ky9_A          405 RPKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGDSYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQG---  481 (587)
T ss_dssp             CEEEEEEEEEECSSCCSCEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---
T ss_pred             ceEEEeeEEEEeccCCCcceEEEEEECCEEEEEEecCCEEEeeeeechhhceeeecCCCCcccccccceeEEEEcCC---
Confidence            35678999877655567899999999998888775422 23567799999888776432     2457899887642   


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     .+.|.|.|.|.++++.|+.+|+.
T Consensus       482 ---------------~~~~~L~A~S~eeK~~Wi~~I~~  504 (587)
T 3ky9_A          482 ---------------AQGYELFFKTRELKKKWMEQFEM  504 (587)
T ss_dssp             ------------------CEEEESSHHHHHHHHHHHHH
T ss_pred             ---------------CceEEEEeCCHHHHHHHHHHHHH
Confidence                           25899999999999999999974

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.53  E-value=0.00082  Score=55.75  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC------------------CCceeEEEeCCeEEEEecCCCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD------------------KEPRGIIPLENIQVREVHDRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~------------------~~~~~~i~L~~~~v~~~~~~~~~  158 (210)
                      ...+++|.|.+..+ .+.++.|++.|=++.|.+.+...+                  ......|+|.++.|..+.  +.+
T Consensus       293 r~li~eG~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~--~~~  369 (418)
T 3t06_A          293 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA--TDK  369 (418)
T ss_dssp             SCEEEEEEEEECCB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS--SCS
T ss_pred             ceeEEeceEEEEeC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccc--ccC
Confidence            45677899887653 235788999999998888774321                  112357888888877543  344


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..|.|.....               .+..+.|.|+|.|.++++.|+.+|++
T Consensus       370 ~~f~l~~~~~---------------~~~~~~~~l~A~s~~ek~~W~~~I~~  405 (418)
T 3t06_A          370 RAFFIICTSK---------------LGPPQIYELVALTSSDKNTWMELLEE  405 (418)
T ss_dssp             SEEEEEECCS---------------SSTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred             ceEEEEecCC---------------CCCceEEEEEcCCHHHHHHHHHHHHH
Confidence            5788776431               01126899999999999999999975

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=97.50  E-value=0.0012  Score=53.74  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC------------------CCceeEEEeCCeEEEEecCCCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD------------------KEPRGIIPLENIQVREVHDRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~------------------~~~~~~i~L~~~~v~~~~~~~~~  158 (210)
                      ...+++|.|.++.. .+.++.|++.|=++.|.+.+...+                  ....+.|+|.++.|..+.  +.+
T Consensus       251 R~li~~G~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~--~~~  327 (368)
T 1xcg_A          251 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA--TDK  327 (368)
T ss_dssp             SCEEEEEEEEECCS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS--SCS
T ss_pred             ceEEeecceEeeec-CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeeccc--CCC
Confidence            45567898876542 245789999998888887764321                  112467888888776543  345


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+|.+.....               .+....|.|+|.|.+++..|+.+|+.
T Consensus       328 ~~f~i~~~~~---------------~g~~~~~~l~a~s~~ek~~W~~~i~~  363 (368)
T 1xcg_A          328 RAFFIICTSK---------------LGPPQIYELVALTSSDKNTWMELLEE  363 (368)
T ss_dssp             SEEEEEECCS---------------SSTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEecC---------------CCCceEEEEEcCCHHHHHHHHHHHHH
Confidence            6788775431               01236899999999999999999975

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=97.41  E-value=0.001  Score=53.95  Aligned_cols=94  Identities=16%  Similarity=0.219  Sum_probs=64.8

Q ss_pred             cCCcceeeEEeecC---c--------cCCeeEEEEEEeCCEEEEeccCCC------C----CceeEEEeCCeEEEEecCC
Q psy17820         97 FNPDKEGWLWKQGG---R--------YKSWKRRWFILNDKCLYYFEYTTD------K----EPRGIIPLENIQVREVHDR  155 (210)
Q Consensus        97 ~~~~~~G~L~k~~~---~--------~~~wk~r~fvL~~~~L~yy~~~~~------~----~~~~~i~L~~~~v~~~~~~  155 (210)
                      ...+++|.|....+   +        ....+.|++.|=++.|.+.+....      .    ..+..|+|..+.+....+ 
T Consensus       208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~-  286 (353)
T 1kz7_A          208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK-  286 (353)
T ss_dssp             CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT-
T ss_pred             hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCC-
Confidence            44567888765321   1        124688999998888887765421      1    124567888877654332 


Q ss_pred             CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       156 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.+++|.|...+.                  ...|.|+|.|.+++..|+.+|++
T Consensus       287 ~~~~~F~i~~~~~------------------~~~~~l~a~s~~ek~~W~~~i~~  322 (353)
T 1kz7_A          287 GDTKKFEIWYNAR------------------EEVYIIQAPTPEIKAAWVNAIRK  322 (353)
T ss_dssp             TBTTEEEEEETTT------------------TEEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCC------------------CcEEEEECCCHHHHHHHHHHHHH
Confidence            3467899876532                  36899999999999999999974

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.36  E-value=0.00075  Score=54.56  Aligned_cols=91  Identities=18%  Similarity=0.269  Sum_probs=63.4

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCC------ceeEEEeCCeEEEEecCC----------------
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKE------PRGIIPLENIQVREVHDR----------------  155 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~------~~~~i~L~~~~v~~~~~~----------------  155 (210)
                      ..+++|.|.+..+     +.|++.|=++.|.+.+......      .+..|+|..+.|...++.                
T Consensus       231 ~li~~G~l~~~~~-----~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~  305 (346)
T 2z0q_A          231 VLCCHGELKNNRG-----VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNE  305 (346)
T ss_dssp             CEEEEEEEEETTS-----CEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHH
T ss_pred             EEEEeceeEECCC-----cEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccCCc
Confidence            3456788865332     6889999888888776432111      245688998888876543                


Q ss_pred             CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       156 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..+++|.|....+                +....|.|+|.|.+++..|+.+|+.
T Consensus       306 ~~~~~F~i~~~~~----------------~~~~~~~l~a~s~~ek~~W~~~i~~  343 (346)
T 2z0q_A          306 RVKNFFRVSFKNG----------------SQSQTHSLQANDTFNKQQWLNCIRQ  343 (346)
T ss_dssp             HTSSEEEEEECCG----------------GGCEEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccccceEEEEecC----------------CCCceEEEEECCHHHHHHHHHHHHH
Confidence            1357888875421                1136899999999999999999975

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.28  E-value=0.0035  Score=51.39  Aligned_cols=94  Identities=21%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC------------------CceeEEEeCCeEEEEecCCCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------------------EPRGIIPLENIQVREVHDRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~------------------~~~~~i~L~~~~v~~~~~~~~~  158 (210)
                      ...+++|.|..+... +..+.|++.|=++.|.+.+...+.                  ...+.|+|.++.|..+... .+
T Consensus       255 R~li~eG~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d-~~  332 (385)
T 1txd_A          255 RKMIHEGPLVWKVNR-DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD-NK  332 (385)
T ss_dssp             SCEEEEEEEEEESSS-SCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC--CC
T ss_pred             ceEEEECcEEEEcCC-CCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccccccC-Cc
Confidence            455678888765432 356889999988888776643211                  1246788888877664322 33


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..|.|.....                 +.+.|.|+|.|.++++.|+.+|++
T Consensus       333 ~~f~i~~~~~-----------------~~~~~~l~a~s~~ek~~W~~~i~~  366 (385)
T 1txd_A          333 ALFVISMSDN-----------------GAQIYELVAQTVSEKTVWQDLICR  366 (385)
T ss_dssp             EEEEEEECSS-----------------CEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCC-----------------CceEEEEEcCCHHHHHHHHHHHHH
Confidence            4555543321                 136899999999999999999974

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.23  E-value=0.0016  Score=60.28  Aligned_cols=95  Identities=21%  Similarity=0.276  Sum_probs=70.8

Q ss_pred             ccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-----------CCceeEEEeCCeEEEEecCC-CCcc
Q psy17820         92 LMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-----------KEPRGIIPLENIQVREVHDR-HKPH  159 (210)
Q Consensus        92 ~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-----------~~~~~~i~L~~~~v~~~~~~-~~~~  159 (210)
                      +.......+++|.|.+.+.+    +.|++.|=++.|.+.+....           ...++.|+|.++.|...++. ..++
T Consensus       437 l~~~~r~Li~eG~l~~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~  512 (1049)
T 3ksy_A          437 IGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKH  512 (1049)
T ss_dssp             GGGTCSCCCCEEEEEETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCS
T ss_pred             cccccceEEEeceEEEEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCccccc
Confidence            33334556789999877643    78999999998888775422           23567788888877665543 4578


Q ss_pred             eEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       160 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|.|...++                   ..|.|.|.|.+++..|+.+|+.
T Consensus       513 ~F~I~~~~~-------------------~~~~L~A~S~eeK~~Wi~~I~~  543 (1049)
T 3ksy_A          513 AFEIILKDE-------------------NSVIFSAKSAEEKNNWMAALIS  543 (1049)
T ss_dssp             EEEECCTTS-------------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             eEEEEcCCC-------------------CEEEEeCCCHHHHHHHHHHHHH
Confidence            999876542                   4899999999999999999974

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.21  E-value=0.0026  Score=51.92  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=63.5

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC------------------CceeEEEeCCeEEEEecCCCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------------------EPRGIIPLENIQVREVHDRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~------------------~~~~~i~L~~~~v~~~~~~~~~  158 (210)
                      ...+++|.|..+... +.++.|++.|=++.|.+.+...+.                  .....|+|..+.+..+....  
T Consensus       257 r~li~eG~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~~--  333 (377)
T 3p6a_A          257 KKLVHEGPLTWRVTK-DKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDH--  333 (377)
T ss_dssp             SCEEEEEEEEEESSS-SCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTTCT--
T ss_pred             ceEEEECCcEEEecC-CCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcccccccc--
Confidence            445678998766532 367899999988888877643210                  01236888888777644332  


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..|.++....                .+...|.|.|.|.+|++.|+.+|++
T Consensus       334 ~~~~~i~~~~----------------~~~~~~~l~A~s~~ek~~W~~~I~~  368 (377)
T 3p6a_A          334 KAFYVLFTWD----------------QEAQIYELVAQTVSERKNWCALITE  368 (377)
T ss_dssp             TEEEEEETTC----------------TTCCEEEEECSSHHHHHHHHHHHHH
T ss_pred             ceeEEEecCC----------------CCCeeEEEecCCHHHHHHHHHHHHH
Confidence            3455444321                1236899999999999999999975

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.10  E-value=7.5e-05  Score=63.54  Aligned_cols=87  Identities=20%  Similarity=0.216  Sum_probs=0.0

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC-------------------CceeEEEeCCeEEEEecC-CCCc
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK-------------------EPRGIIPLENIQVREVHD-RHKP  158 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~-------------------~~~~~i~L~~~~v~~~~~-~~~~  158 (210)
                      .+++|.|.+.    ++.+.|+|.|-++.|.+.+.....                   --+..|+|.++.|....+ .+.+
T Consensus       253 li~eG~l~~~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~~~~~  328 (510)
T 3jzy_A          253 LLHSGKLYKT----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDE  328 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEeceEEEc----CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCCCccc
Confidence            4566776654    345789999988888877633221                   013457777777766544 3567


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++|+|....                    ++|.|+|.|.+++..|+.+|++
T Consensus       329 ~~F~i~~~~--------------------~~~~l~a~s~~ek~~W~~~i~~  359 (510)
T 3jzy_A          329 PVFHISHID--------------------RVYTLRTDNINERTAWVQKIKA  359 (510)
T ss_dssp             ---------------------------------------------------
T ss_pred             cceeeeccc--------------------eeEEeccCCHHHHHHHHHHHHH
Confidence            889987653                    5899999999999999999975

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=97.00  E-value=0.0057  Score=48.61  Aligned_cols=95  Identities=16%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             CcceeeEEeecC--ccCCeeEEEEEEeCCEEEEeccCCC------CCceeEEEeCCeEEEEecCCCCcceEEEEeCCcee
Q psy17820         99 PDKEGWLWKQGG--RYKSWKRRWFILNDKCLYYFEYTTD------KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEF  170 (210)
Q Consensus        99 ~~~~G~L~k~~~--~~~~wk~r~fvL~~~~L~yy~~~~~------~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~  170 (210)
                      .+..|.+....+  ..+..+.|++.|=++.|.+-+....      -..++.|+|.++.|....+ +.++.|.|.....  
T Consensus       203 li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~-~~~~~F~i~~~~~--  279 (311)
T 1nty_A          203 LILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE-GDPCKFALWVGRT--  279 (311)
T ss_dssp             EEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT-TCTTEEEEEESSS--
T ss_pred             ceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccC-CCCceEEEEeCCC--
Confidence            345565554432  1345689999998888887764321      1235668888887765433 3567899876210  


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   .++...+.|+|.|++++..|+.+|+.
T Consensus       280 -------------~~~~~~~~l~a~s~~ek~~W~~~i~~  305 (311)
T 1nty_A          280 -------------PTSDNKIVLKASSIENKQDWIKHIRE  305 (311)
T ss_dssp             -------------CCTTTCEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------CCCCceEEEECCCHHHHHHHHHHHHH
Confidence                         01135789999999999999999975

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=96.98  E-value=0.0041  Score=53.36  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=62.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC------------------CceeEEEeCCeEEEEecCCCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------------------EPRGIIPLENIQVREVHDRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~------------------~~~~~i~L~~~~v~~~~~~~~~  158 (210)
                      ...+++|.|.++... +.++.|+|.|=++.|.+.+...+.                  .....|+|.++.+..+...  .
T Consensus       410 R~LI~eG~l~~~~~~-~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d--~  486 (536)
T 3odw_A          410 KKLVHEGPLTWRVTK-DKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD--H  486 (536)
T ss_dssp             SCEEEEEEEEEESCC----CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTTC--T
T ss_pred             ceeeeecceEEEecC-CCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeeccccc--C
Confidence            456778999776532 357899999988888877643220                  0123688888877765433  3


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..|.++....                .....|.|.|.|.+|++.|+.+|++
T Consensus       487 ~~ffli~~~~----------------~~~~~~~L~A~S~eEK~~W~~~I~~  521 (536)
T 3odw_A          487 KAFYVLFTWD----------------QEAQIYELVAQTVSERKNWCALITE  521 (536)
T ss_dssp             TEEEEEEC-------------------CCCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CceEEEecCC----------------CCceEEEEECCCHHHHHHHHHHHHH
Confidence            4566554311                1136899999999999999999975

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=96.83  E-value=0.018  Score=50.70  Aligned_cols=92  Identities=23%  Similarity=0.364  Sum_probs=62.4

Q ss_pred             cCCcceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+++.|++.|.++. ...|++|++.|..+.+......  ..+...+.+..+.-..-......+++.+...++       
T Consensus       557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~--~~~~~l~~~~~v~~v~k~~i~~~~~l~~~~k~~-------  627 (689)
T 3v5w_A          557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEG--EAPQSLLTMEEIQSVEETQIKERKCLLLKIRGG-------  627 (689)
T ss_dssp             SCCCEEEEEEEC-------CEEEEEEEETTEEEEECTT--SCCCEEEEGGGEEEEEEEESSSCEEEEEEETTT-------
T ss_pred             CcceeecccccCCCcccchhhhhccccCCCcccccccC--CCCcceeeeccccccccCcCCCCcceeeeecCC-------
Confidence            456789999998864 4589999999999988765433  344456667664432222223446777766543       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  +.+++.++|+.++.+|..+|+.
T Consensus       628 ------------k~f~~~t~~~~~~~~W~~~i~~  649 (689)
T 3v5w_A          628 ------------KQFILQCDSDPELVQWKKELRD  649 (689)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------cEEEEECCChHHHHHHHHHHHH
Confidence                        7899999999999999999974

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=96.79  E-value=0.012  Score=47.68  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=62.9

Q ss_pred             CCcceeeEEeecC-----ccCCeeEEEEEEeCCEEEEeccCCC---------CCceeEEEeCCeEEEEecCCCCcceEEE
Q psy17820         98 NPDKEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTD---------KEPRGIIPLENIQVREVHDRHKPHCFEL  163 (210)
Q Consensus        98 ~~~~~G~L~k~~~-----~~~~wk~r~fvL~~~~L~yy~~~~~---------~~~~~~i~L~~~~v~~~~~~~~~~~f~i  163 (210)
                      ..+..|-+....+     ..+..+.|++.|=++.|.+-+....         ...+..|+|..+.|....+ +.++.|.|
T Consensus       206 ~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~-~~~~~F~i  284 (354)
T 2rgn_B          206 KLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQ-GDPCRFAL  284 (354)
T ss_dssp             CEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGG-GCTTEEEE
T ss_pred             cccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccC-CCCceEEE
Confidence            3445666554322     1235688999999988888765432         1234568888877765332 34678998


Q ss_pred             EeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        164 FTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...+.               .++...|.|+|.|.+++..|+.+|++
T Consensus       285 ~~~~~---------------~~~~~~~~l~a~s~~ek~~W~~~i~~  315 (354)
T 2rgn_B          285 TSRGP---------------EGGIQRYVLQAADPAISQAWIKHVAQ  315 (354)
T ss_dssp             EEECS---------------SSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             EecCC---------------CCCceEEEEECCCHHHHHHHHHHHHH
Confidence            76421               00126899999999999999999974

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=96.47  E-value=0.021  Score=38.72  Aligned_cols=94  Identities=13%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCC-----CCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTT-----DKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~-----~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~  171 (210)
                      +...+.|++....+. ..=+.|++.|-...|.+.+...     .-.-+..|.+..+.+......+.+..|+|-.++.   
T Consensus         8 G~Ll~q~~f~V~~~~-~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~~d~~kFeiw~~~~---   83 (119)
T 1fho_A            8 GRIIRHDAFQVWEGD-EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTDEDTIVLQPQEPGL---   83 (119)
T ss_dssp             CCSSEEEEEEECSTT-CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTTCCEEEEECCSTTC---
T ss_pred             CCccccCceEEEeCC-CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCCCCCcEEEEccCCC---
Confidence            456677887766542 3347788888888777776541     1234667889888887765534566788876643   


Q ss_pred             eeeecCCCCceeeecceEEEE--EcCCHH-HHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRM--SAATAE-EKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l--~a~s~~-e~~~Wi~al~~  209 (210)
                                     ...|.+  +|.|.+ ..+.|+..|+.
T Consensus        84 ---------------~~~~il~~qA~s~e~~K~~Wv~~I~~  109 (119)
T 1fho_A           84 ---------------PSFRIKPKDFETSEYVRKAWLRDIAE  109 (119)
T ss_dssp             ---------------CCBCCCCCSSSSCSHHHHHHHHHHHT
T ss_pred             ---------------CceEEEeeecCCcHHHHHHHHHHHHH
Confidence                           135667  899999 99999999875

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=95.78  E-value=0.042  Score=42.62  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=41.7

Q ss_pred             eeEEEeCCeEEEEe--cCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        139 RGIIPLENIQVREV--HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       139 ~~~i~L~~~~v~~~--~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .+.++|.-+.+...  ....++++|+|..+++                  ..+.+|+|++..++.+|+.+|+.
T Consensus       205 ~~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG------------------~~t~~l~~~d~~~a~~W~~ai~~  259 (263)
T 1z87_A          205 AKHVSLKMAYVSRRCTPTDPEPRYLEICAADG------------------QDAVFLRAKDEASARSWAGAIQA  259 (263)
T ss_dssp             CEEEESSSEEEEEECCSSCSSSCEEEEEETTT------------------TEEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccccCcceeeeeeeccccCCCCceEEEECCCC------------------CeeEEEEECCHHHHHHHHHHHHH
Confidence            35678887766542  2334789999999875                  36899999999999999999974

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=95.62  E-value=0.19  Score=40.75  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCcceeeEEeecC-----ccCCeeEEEEEEeCCEEEE-eccCC-------------------CCCceeEEEeCCeEEEEe
Q psy17820         98 NPDKEGWLWKQGG-----RYKSWKRRWFILNDKCLYY-FEYTT-------------------DKEPRGIIPLENIQVREV  152 (210)
Q Consensus        98 ~~~~~G~L~k~~~-----~~~~wk~r~fvL~~~~L~y-y~~~~-------------------~~~~~~~i~L~~~~v~~~  152 (210)
                      ..+..|.+....+     ..+.-+.+++.|=++.|.+ .+...                   .-.-.+.|+|.++.|...
T Consensus       237 ~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~~  316 (377)
T 1foe_A          237 DLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRAL  316 (377)
T ss_dssp             GEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECC
T ss_pred             ceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEec
Confidence            3445665543321     1123467888887776554 44211                   112356789999888776


Q ss_pred             cCCC-Cc-ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        153 HDRH-KP-HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       153 ~~~~-~~-~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++.. .. ..|+|......            ....+.+.|.|+|.|.+++..|+.+|++
T Consensus       317 ~~~~~~~~~~f~i~~~~~~------------~~~~~~~~~~l~A~s~~eK~~W~~~i~~  363 (377)
T 1foe_A          317 PSADAEANAVCEIVHVKSE------------SEGRPERVFHLCCSSPESRKDFLKSVHS  363 (377)
T ss_dssp             CCTTTTSCCEEEEEECCBT------------GGGBCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCccchhhHHHHHhcccc------------ccCCCcceEEEEeCCHHHHHHHHHHHHH
Confidence            5542 22 34666532100            0001246899999999999999999874

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=95.25  E-value=0.071  Score=38.62  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             eeEEEeCCeEEEEe--cCCCCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        139 RGIIPLENIQVREV--HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       139 ~~~i~L~~~~v~~~--~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...|+|.=|.|...  ....+..+|+|..+++                  ..+..|+|.+..+...|+.+|+.
T Consensus       120 ~~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG------------------~~t~iLrc~D~a~a~~Wf~aI~s  174 (178)
T 2adz_A          120 AKHVSLKMAYVSRRCTPTDPEPRYLEICAADG------------------QDAVFLRAKDEASARSWAGAIQA  174 (178)
T ss_dssp             CEEEETTTCEEEEECCSSCCSSCEEEEEETTT------------------TEEEEECCSSHHHHHHHHHHHHH
T ss_pred             ceeecHHHHHHHHhccCCCCCccEEEEEcCCC------------------CeeEEEEeCCHHHHHHHHHHHHH
Confidence            46788887766542  2234778999999986                  35899999999999999999974

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=94.31  E-value=0.049  Score=40.79  Aligned_cols=38  Identities=21%  Similarity=0.441  Sum_probs=28.1

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeC-----C--EEEEEeecCCc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILND-----K--CLYYFEYTTDK   44 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~-----~--~L~Yy~~~~~~   44 (210)
                      ..++.||+...+.  .|.||+||+||+.     +  .|.-|++.+|+
T Consensus         7 ~~~v~eg~vk~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr   51 (224)
T 3ml4_A            7 EAALVEGQVKLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCER   51 (224)
T ss_dssp             CCCSEEEEEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHH
T ss_pred             cceeEEEeeeeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhh
Confidence            3567899997776  6799999999963     2  68889888775

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=90.92  E-value=2.1  Score=29.30  Aligned_cols=42  Identities=17%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             CCCCeeeEEEeeCC--------CCCCceeEEEEEeC------CEEEEEeecCCccc
Q psy17820          5 FNPDKEGWLWKQGG--------RYKSWKRRWFILND------KCLYYFEYTTDKSA   46 (210)
Q Consensus         5 ~~~~~~G~L~K~g~--------~~~~wkrRwfvL~~------~~L~Yy~~~~~~~~   46 (210)
                      .++.++|-|.=-.+        ....|+|+++||+.      -.|-||..++...|
T Consensus        16 ~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKp   71 (136)
T 1v5m_A           16 VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP   71 (136)
T ss_dssp             CSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC
T ss_pred             ceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCC
Confidence            46778887744322        45689999999952      37999998877654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=82.66  E-value=1.5  Score=39.21  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             CCeeeEEEeeCC--CCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          7 PDKEGWLWKQGG--RYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         7 ~~~~G~L~K~g~--~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      +...|||.....  ..++=|.-||||+...|.+|+++.++.
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE  580 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccccchhhhc
Confidence            677899998655  234568899999999999999965544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	8e-32
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	3e-14
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	3e-24
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	1e-06
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	3e-18
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	4e-10
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	1e-17
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	3e-07
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	9e-17
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	9e-10
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	0.002
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	9e-16
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	6e-08
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	1e-15
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	4e-06
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-15
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	1e-09
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	8e-04
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	7e-15
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-06
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-13
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-06
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	2e-13
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	4e-07
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	3e-13
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	1e-07
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	5e-12
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	1e-07
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	0.002
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	2e-11
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	0.002
d2dfka2	162	b.55.1.1 (A:240-401) Rho guanine nucleotide exchan	3e-11
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	5e-11
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	7e-05
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	6e-11
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	1e-04
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	7e-11
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	6e-07
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	2e-10
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	3e-04
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	1e-09
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	5e-07
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	2e-09
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	4e-04
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	3e-09
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	0.002
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	4e-09
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	4e-06
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	7e-09
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	2e-06
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	7e-09
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	2e-05
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	8e-09
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	3e-07
d1fhoa_	119	b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis ele	2e-08
d1fhoa_	119	b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis ele	0.001
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	2e-08
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	3e-04
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	3e-08
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	4e-06
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	6e-08
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	6e-05
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	9e-08
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	1e-07
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	0.004
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	8e-07
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	8e-07
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	0.003
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	2e-06
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	3e-06
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	5e-04
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	6e-06
d1dbha2	133	b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {H	2e-05
d1xcga2	140	b.55.1.1 (A:942-1081) Rho guanine nucleotide excha	6e-05
d1ntya2	121	b.55.1.1 (A:1415-1535) Triple functional domain pr	1e-04
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	7e-04
d1txda2	114	b.55.1.1 (A:1020-1133) Rho guanine nucleotide exch	0.003

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 8e-32
 Identities = 78/116 (67%), Positives = 94/116 (81%), Gaps = 2/116 (1%)

Query: 95  TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD 154
           TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDKEPRGIIPLEN+ +REV D
Sbjct: 1   TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD 60

Query: 155 RHKPHCFELFTSG--FEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             KP+CFEL+      + IKACKT+++G+VVEG H VYR+SA + EEK+EW+K + 
Sbjct: 61  PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.5 bits (156), Expect = 3e-14
 Identities = 35/45 (77%), Positives = 37/45 (82%)

Query: 3  TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSAC 47
          TFFNPD+EGWL K GGR K+WKRRWFIL D CLYYFEYTTDK   
Sbjct: 1  TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPR 45

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 3e-24
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 99  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
                WL    G  KSW + W +L    L  ++   + +  G + L   ++ E   +   
Sbjct: 8   IVMADWLKI-RGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDG 66

Query: 159 HCFELFTSGFEFI---KACKTDSEGKVVEGKHTVYR-MSAATAEEKDEWIKCLS 208
            CF+LF    + I   K  K ++ G + +   + Y  + A +  +   W+  L 
Sbjct: 67  FCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 7  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
               WL    G  KSW + W +L    L  ++   +   
Sbjct: 8  IVMADWLKI-RGTLKSWTKLWCVLKPGVLLIYKTQKNGQW 46

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 3e-18
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 99  PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---R 155
           P K GWL KQ    K+W++R+F+L  + LYY++   D +P+G + L    ++E+      
Sbjct: 8   PIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEE 67

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                FE+  + ++  +                 Y + A++  E +EW+K L 
Sbjct: 68  AGKFVFEIIPASWDQNRM------------GQDSYVLMASSQAEMEEWVKFLR 108

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 4e-10
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 7   PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFIL 66
           P K GWL KQ    K+W++R+F+L  + LYY++   D          G            
Sbjct: 8   PIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNP-- 65

Query: 67  NDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWL 105
            +   + FE       +      + ++      + E W+
Sbjct: 66  EEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWV 104

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 1e-17
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD---KEPRGIIPLENIQVREVHDRHK 157
           K+G+L KQG + K+WK R F+L     +   Y        P G   L    V  + D   
Sbjct: 13  KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 72

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           P   +               +  KV+    T Y + A++  E+ EWI+ +
Sbjct: 73  PTGVKG----------NVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 112

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD 43
          K+G+L KQG + K+WK R F+L     +   Y   
Sbjct: 13 KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPS 47

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 9e-17
 Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 21/108 (19%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI-QVREVHDRHKPH 159
           KEG+L KQGG  K+WK RWF L+   L YF+     EP  I+ L     V+  + + + +
Sbjct: 6   KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVN 65

Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           CF L                          + + A T  E DEWIK L
Sbjct: 66  CFCLVF--------------------PFRTFYLCAKTGVEADEWIKIL 93

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 9e-10
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSG 54
          KEG+L KQGG  K+WK RWF L+   L YF+         I + + 
Sbjct: 6  KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTE 51

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 53 SGRYKSWKRRWFILNDKCLYYF 74
           G  K+WK RWF L+   L YF
Sbjct: 14 GGLVKTWKTRWFTLHRNELKYF 35

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 9e-16
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           +EG+L K+G  + +WK  W +L +  + +++  +D  P+G+IPL+   +           
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           F                        K   +   AA  EE+D W++ ++
Sbjct: 67  FVFKI-----------------TTTKQQDHFFQAAFLEERDAWVRDIN 97

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 6e-08
 Identities = 13/65 (20%), Positives = 28/65 (43%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILND 68
          +EG+L K+G  + +WK  W +L +  + +++  +D S   +    G   +   + F    
Sbjct: 7  REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66

Query: 69 KCLYY 73
               
Sbjct: 67 FVFKI 71

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.0 bits (170), Expect = 1e-15
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 27/119 (22%)

Query: 98  NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV- 152
              K G+L K+   +      W++RW  L+    YY+    DK+ +G   ++   VR   
Sbjct: 103 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNN 162

Query: 153 ---HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               D  K  CFE+                         +Y+ +AA+ ++ +EW++ L 
Sbjct: 163 TLRKDGKKDCCFEICAPD-------------------KRIYQFTAASPKDAEEWVQQLK 202

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 4/79 (5%)

Query: 6   NPDKEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKR 61
              K G+L K+   +      W++RW  L+    YY+    DK         G       
Sbjct: 103 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNN 162

Query: 62  RWFILNDKCLYYFEYTTDK 80
                  K   +     DK
Sbjct: 163 TLRKDGKKDCCFEICAPDK 181

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 2e-15
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 18/109 (16%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQV-REVHDRHKPH 159
           K G+  KQG   K+WKRR+F L++  + YF+   +KEP  +IPL+ +   +E        
Sbjct: 5   KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 64

Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
              LF                  +      + + A + EE   WIK +S
Sbjct: 65  RDNLFE-----------------IVTTSRTFYVQADSPEEMHSWIKAVS 96

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 1e-09
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILND 68
          K G+  KQG   K+WKRR+F L++  + YF+   +K    +      +K  + +   +  
Sbjct: 5  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 64

Query: 69 KCLYYFEYTTDKPFKIPEDDGNDLM 93
          +   +   TT + F +  D   ++ 
Sbjct: 65 RDNLFEIVTTSRTFYVQADSPEEMH 89

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 53  SGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQGGRY 112
               K+WKRR+F L++  + YF+           +   + +      +       +    
Sbjct: 13  GAVMKNWKRRYFQLDENTIGYFKS----------ELEKEPLRVIPLKEVHKVQECKQSDI 62

Query: 113 KSWKRRWFILNDKCLYYFEYTTDKE 137
                 + I+     +Y +  + +E
Sbjct: 63  MMRDNLFEIVTTSRTFYVQADSPEE 87

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 7e-15
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 18/124 (14%)

Query: 101 KEGWLWKQG-----GRYKSWKRRWFILNDKCLYYFEYTTDKE----PRGIIPLENIQVRE 151
            E    K+          ++K+  F+L    L Y+EY  ++      +G I +E I   E
Sbjct: 5   LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64

Query: 152 VHDRHKPHCFELF--------TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
                K    E          +   +     +     +VV  +  +Y + + T E +  W
Sbjct: 65  TVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLY-VFSPTEELRKRW 123

Query: 204 IKCL 207
           I  L
Sbjct: 124 IHQL 127

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 9  KEGWLWKQG-----GRYKSWKRRWFILNDKCLYYFEYTTDKS 45
           E    K+          ++K+  F+L    L Y+EY  ++ 
Sbjct: 5  LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG 46

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 2e-13
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 101 KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
            EG L+K+G   K WK RWF+L      L Y+++  D E +G+I L  ++          
Sbjct: 10  YEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIG 69

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
               +    F  +K                VY   A       +W+  +
Sbjct: 70  APKTVDEKAFFDVKT------------TRRVYNFCAQDVPSAQQWVDRI 106

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 9  KEGWLWKQGGRYKSWKRRWFIL--NDKCLYYFEYTTDKSAC---LIENSSGRYKSWKRRW 63
           EG L+K+G   K WK RWF+L      L Y+++  D        +              
Sbjct: 10 YEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIG 69

Query: 64 FILNDKCLYYFEYTTDKP 81
                   +F+  T + 
Sbjct: 70 APKTVDEKAFFDVKTTRR 87

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-13
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           K+G L KQG R K+WK R FIL +    L+Y++    ++P G I L    V  V      
Sbjct: 4   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 63

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                           + ++  +++      Y + AAT +E+ EWIK +
Sbjct: 64  RK-------------SEEENLFEIITADEVHYFLQAATPKERTEWIKAI 99

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIEN 51
          K+G L KQG R K+WK R FIL +   Y   Y    +   +  
Sbjct: 4  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGA 46

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 3e-13
 Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           +EGW+     +    KR ++ L+ KC+  F+  T       IPL  I   E         
Sbjct: 3   REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVP 62

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
                  FE I           + G  T    S   AE    W   +
Sbjct: 63  PGTNPHCFE-IVTANATYFVGEMPGG-TPGGPSGQGAEAARGWETAI 107

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-07
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSAC 47
          +EGW+     +    KR ++ L+ KC+  F+  T     
Sbjct: 3  REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYY 41

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 5e-12
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 19/112 (16%)

Query: 101 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
           K+G+L K+   +      W++RW +++    YY+     K+P+G   ++   VR      
Sbjct: 3   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 62

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                          +  K +S  ++       Y  +A +  E  +W+  +S
Sbjct: 63  ---------------RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQIS 99

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 9  KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWF 64
          K+G+L K+   +      W++RW +++    YY+     K         G          
Sbjct: 3  KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 62

Query: 65 ILNDKCLYYFEYTTDK 80
            + K   +   + D+
Sbjct: 63 RDSKKESCFELTSQDR 78

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 9/88 (10%)

Query: 50  ENSSGRYKSWKRRWFILNDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWLWKQG 109
           ++ S     W++RW +++    YY+     K  K                          
Sbjct: 12  KDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPK---------GTFLIKGYSVRMAPHLR 62

Query: 110 GRYKSWKRRWFILNDKCLYYFEYTTDKE 137
              K          D+  Y F  T+  E
Sbjct: 63  RDSKKESCFELTSQDRRTYEFTATSPAE 90

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 37/126 (29%)

Query: 101 KEGWLWK--------QGGRYKSWKRRWFILND------KCLYYFEYTTDKEPRGIIPLEN 146
           +EG L            G    W++   +L          L +F       P+  IPL  
Sbjct: 20  REGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSA 79

Query: 147 IQVREVHDRH----KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDE 202
           I             K + F L                          Y +    + +K  
Sbjct: 80  IIEVRTTMPLEMPEKDNTFVLKVEN-------------------GAEYILETIDSLQKHS 120

Query: 203 WIKCLS 208
           W+  + 
Sbjct: 121 WVADIQ 126

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 10/84 (11%), Positives = 19/84 (22%), Gaps = 15/84 (17%)

Query: 9   KEGWLWK--------QGGRYKSWKRRWFILND------KCLYYFEYTTDKSACLIENSSG 54
           +EG L            G    W++   +L          L +F         +    S 
Sbjct: 20  REGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSA 79

Query: 55  RYKSWKRRWFILNDKCLYYFEYTT 78
                +    +   +    F    
Sbjct: 80  -IIEVRTTMPLEMPEKDNTFVLKV 102

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 3e-11
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 15/125 (12%)

Query: 88  DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIP 143
           +G+D++         G +      Y   ++R F L D  +   +    +      +G I 
Sbjct: 16  EGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRID 75

Query: 144 LENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
           ++  +V ++ D           + F+              +    V+   A   EEK  W
Sbjct: 76  MDKYEVIDIEDGRDDDFNVSMKNAFKLH-----------NKETEEVHLFFAKKLEEKIRW 124

Query: 204 IKCLS 208
           ++   
Sbjct: 125 LRAFR 129

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.1 bits (134), Expect = 5e-11
 Identities = 8/118 (6%), Positives = 30/118 (25%), Gaps = 18/118 (15%)

Query: 99  PDKEGWLWKQG--------GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVR 150
              EG++ ++            +SW + +       + +++     +    +        
Sbjct: 8   EGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSY 67

Query: 151 EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           ++ +       +                          ++ + A    E  +W+  L 
Sbjct: 68  DLQNAAIEIASDYTKKKHVLRVKLA----------NGALFLLQAHDDTEMSQWVTSLK 115

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 4/48 (8%), Positives = 16/48 (33%), Gaps = 8/48 (16%)

Query: 7  PDKEGWLWKQG--------GRYKSWKRRWFILNDKCLYYFEYTTDKSA 46
             EG++ ++            +SW + +       + +++      +
Sbjct: 8  EGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKS 55

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 6e-11
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 19/112 (16%)

Query: 101 KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRH 156
           K G+L K+   +      W++RW  L+    YY+    DK+ +G   ++   VR  +   
Sbjct: 11  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 70

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           K    +                  ++      +Y+ +AA+ ++ +EW++ L 
Sbjct: 71  KDGKKDCCF---------------EICAPDKRIYQFTAASPKDAEEWVQQLK 107

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 9  KEGWLWKQGGRY----KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWF 64
          K G+L K+   +      W++RW  L+    YY+    DK         G          
Sbjct: 11 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 70

Query: 65 ILNDKCLYYFEYTTDK 80
              K   +     DK
Sbjct: 71 KDGKKDCCFEICAPDK 86

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 7e-11
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 21/113 (18%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCL-YYFEYTTDKEPRGIIPLENIQVREV----HDR 155
           KEGWL K+G   K+W+ R+F+L +      ++       +   PL N  V +      +R
Sbjct: 9   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68

Query: 156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
            +P+ F +    +  +                        T EE++EW   + 
Sbjct: 69  PRPNTFIIRCLQWTTVI----------------ERTFHVETPEEREEWTTAIQ 105

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 6e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILND 68
          KEGWL K+G   K+W+ R+F+L +   +       +     E     +   + +      
Sbjct: 9  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68

Query: 69 KCLYYFEYTTDKPFKIPE 86
               F     +   + E
Sbjct: 69 PRPNTFIIRCLQWTTVIE 86

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-10
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)

Query: 99  PDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH---D 154
               GWL KQ     + WKRRWF+L+  CL+Y++ + ++   G + L +  +R       
Sbjct: 9   VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAP 68

Query: 155 RHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           R +   F     G                      Y ++A T E+   W++ L 
Sbjct: 69  RGRRFTFTAEHPG-------------------MRTYVLAADTLEDLRGWLRALG 103

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 7  PDKEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKSAC 47
              GWL KQ     + WKRRWF+L+  CL+Y++ + ++S  
Sbjct: 9  VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVL 50

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 24/109 (22%)

Query: 101 KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH 159
           K GWL K   +  + +++RW   +   + Y+    +   +GIIPL  I           +
Sbjct: 3   KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAI---STVRVQGDN 59

Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
            FE+ T                        +       EE+++WI  L 
Sbjct: 60  KFEVVT--------------------TQRTFVFRVEKEEERNDWISILL 88

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-07
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 9  KEGWLWKQGGRY-KSWKRRWFILNDKCLYYF---EYTTDKSACLIENSSGRYKSWKRRWF 64
          K GWL K   +  + +++RW   +   + Y+   +    K    +   S        ++ 
Sbjct: 3  KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFE 62

Query: 65 ILNDKCLYYFEYTTDK 80
          ++  +  + F    ++
Sbjct: 63 VVTTQRTFVFRVEKEE 78

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-09
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 101 KEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           ++GWL     G      K  WF+L  + L +++   +KE + ++ ++N+++R+V      
Sbjct: 5   RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 64

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                             ++E + V   +    ++  T EE D W     
Sbjct: 65  SKH----------IFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFL 104

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 9   KEGWLWKQ--GGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFIL 66
           ++GWL     G      K  WF+L  + L +++   +K    + +          + F+ 
Sbjct: 5   RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 64

Query: 67  NDKCLYYFEYTTDKPFKIPEDDGNDLMHTFFNPDKEGWL 105
           +    + F     +   + +D     +      + + W 
Sbjct: 65  SK---HIFALFNTEQRNVYKDYRQLELACETQEEVDSWK 100

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 101 KEGWLWKQGG-RYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
             G+L  +       + RR+FIL     CL ++         G   + ++Q+  +     
Sbjct: 17  ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSI 76

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +   + F F+                  Y + A   ++  +W++ L+
Sbjct: 77  ATPKQKPKTPFCFVINA-----------LSQRYFLQANDQKDLKDWVEALN 116

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 9  KEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKS 45
            G+L  +       + RR+FIL+ +      Y  +  
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQ 54

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 4e-09
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 18/111 (16%)

Query: 98  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
                G+L++  G  K WK  WF++ +K LY +  + D       PL    V  V D + 
Sbjct: 7   GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENS 66

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                                  +++      Y   A  A     WI    
Sbjct: 67  ESKVF------------------QLLHKGMVFYVFKADDAHSTQRWIDAFQ 99

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 4e-06
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 6  NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRW 63
               G+L++  G  K WK  WF++ +K LY +  + D +A   +   G   +  +  
Sbjct: 7  GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDE 64

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 7e-09
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 100 DKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
              G+LW  G   +K WK+R+F+L     Y F        +   P E +Q+      +  
Sbjct: 9   KHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTF-AMCSYREKKAEPQELLQLDGYTVDYTD 67

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               L      F    + D               ++   +++  W++ + 
Sbjct: 68  PQPGLEGGRAFFNAVKEGD-----------TVIFASDDEQDRILWVQAMY 106

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 8   DKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRR---- 62
              G+LW  G   +K WK+R+F+L     Y F   + +          +   +       
Sbjct: 9   KHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDP 68

Query: 63  WFILNDKCLYYFEYTTDKPFKIPEDDGNDLMH 94
              L     ++             DD  D + 
Sbjct: 69  QPGLEGGRAFFNAVKEGDTVIFASDDEQDRIL 100

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 7e-09
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 15/108 (13%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           K G L+ +      W   +F+L    +YY E T+    RG++ +   Q+    +      
Sbjct: 3   KNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRL 62

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           F                    +         ++A + EE  +W+K + 
Sbjct: 63  FV---------------FSISMPSVAQWSLDVAADSQEELQDWVKKIR 95

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 20/62 (32%)

Query: 9  KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILND 68
          K G L+ +      W   +F+L    +YY E T+      + +      + +        
Sbjct: 3  KNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRL 62

Query: 69 KC 70
            
Sbjct: 63 FV 64

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 8e-09
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 26/108 (24%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           K G + K+ G     +RR  +L +    Y+    +K  +G IP          +      
Sbjct: 50  KMGPVDKRKG--LFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQEL---RPEAKNFKT 104

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
           F + T                     +  Y +    +    +W + + 
Sbjct: 105 FFVHT--------------------PNRTYYL-MDPSGNAHKWCRKIQ 131

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 9   KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSAC-LIENSSGRYKSWK--RRWFI 65
           K G + K+ G     +RR  +L +    Y+    +K     I  S       K  + +F+
Sbjct: 50  KMGPVDKRKG--LFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKNFKTFFV 107

Query: 66  LNDKCLYYFE 75
                 YY  
Sbjct: 108 HTPNRTYYLM 117

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 10/108 (9%), Positives = 26/108 (24%), Gaps = 19/108 (17%)

Query: 102 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP----RGIIPLENIQVREVHDRHK 157
                   G      R  F+  +K ++  +  +   P       I L+   +R+      
Sbjct: 13  HDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTT--D 70

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIK 205
                L               +   +       +    +   +  W++
Sbjct: 71  EDTIVLQ-------------PQEPGLPSFRIKPKDFETSEYVRKAWLR 105

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 4/40 (10%), Positives = 10/40 (25%)

Query: 10 EGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLI 49
                  G      R  F+  +K ++  +  +       
Sbjct: 13 HDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYT 52

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 101 KEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHK 157
           K G+L  +   G    +W R+++      L       D      + ++N  V  V    +
Sbjct: 7   KAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVAGGLAMDIDNCSVMAVDCEDR 65

Query: 158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
            +CF++ +                          + A + ++ +EWI  +
Sbjct: 66  RYCFQITSFDG------------------KKSSILQAESKKDHEEWICTI 97

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 9  KEGWLWKQ---GGRYKSWKRRWFILNDKCLYYFEYTTDKSACLI 49
          K G+L  +   G    +W R+++      L             +
Sbjct: 7  KAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAM 50

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 18/108 (16%)

Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH 159
             EG+L  +   Y+ ++  W  L    L+++           + + ++      +  + +
Sbjct: 12  YFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKN 71

Query: 160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           C +                            ++     E  +EW   +
Sbjct: 72  CAKFTLV------------------LPKEEVQLKTENTESGEEWRGFI 101

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 8/66 (12%), Positives = 19/66 (28%)

Query: 8  DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRRWFILN 67
            EG+L  +   Y+ ++  W  L    L+++            +        ++     N
Sbjct: 12 YFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKN 71

Query: 68 DKCLYY 73
                
Sbjct: 72 CAKFTL 77

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 6e-08
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 100 DKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYFEY----TTDKEPRGIIPLE 145
            KEGWL           + GG  + WK+ + +L    LY ++     TT  E    I + 
Sbjct: 2   AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVN 61

Query: 146 NIQV-REVHDRHKPHCFELFTSGFEFIKACKTDSE 179
              +     +  + + F L TS  E +   +   +
Sbjct: 62  ACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDD 96

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 6e-05
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 8  DKEGWLW----------KQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYK 57
           KEGWL           + GG  + WK+ + +L    LY ++   +++    E       
Sbjct: 2  AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVN 61

Query: 58 SWKRRWFILNDKCLYYFEYTTD 79
          +          K    F  TT 
Sbjct: 62 ACLIDISYSETKRKNVFRLTTS 83

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 9e-08
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 27/112 (24%)

Query: 103 GWLWKQGGRYKSWKRRWFIL---NDKCLYYFEYTTDKEPRGIIPLENIQVREVH---DRH 156
           G L       ++W   W  +   + + L+    + D      IPL + ++          
Sbjct: 5   GPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLD 63

Query: 157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             H ++L                          + +SA++AE + +W++ LS
Sbjct: 64  SGHVWKLQW--------------------AKQSWYLSASSAELQQQWLETLS 95

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 24/125 (19%)

Query: 88  DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEP---RGIIPL 144
           +G+D+  T  N      +  Q G  +  + R+F+L    L     +        +G IP+
Sbjct: 18  EGDDI-KTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPI 76

Query: 145 ENIQVRE-VHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEW 203
             + V            FE+  S  E                      +     ++  EW
Sbjct: 77  AGMVVNRLDEIEGSDCMFEITGSTVER-------------------IVVHCNNNQDFQEW 117

Query: 204 IKCLS 208
           ++ L+
Sbjct: 118 MEQLN 122

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 1   MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWK 60
           + T  N      +  Q G  +  + R+F+L    L     +   S  + +          
Sbjct: 22  IKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVV 81

Query: 61  RRWFILNDKCLYYFEYTTDKPFKI 84
                  +     FE T     +I
Sbjct: 82  -NRLDEIEGSDCMFEITGSTVERI 104

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-07
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 101 KEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHC 160
           K G+L K     KS  +R+F+L                  +   EN +            
Sbjct: 4   KVGYLRKP----KSMHKRFFVLRAASEAGGPAR-------LEYYENEKKWRHKSSAPKRS 52

Query: 161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
             L +      +A   +     +  +   + ++A +  E+D W + L 
Sbjct: 53  IPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALL 100

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 8e-07
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 31/120 (25%)

Query: 101 KEGWLWKQGGRY------KSWKRRWFILNDKCL------YYFEYTTDKEPRGIIPLENIQ 148
           K GWL+K           +S+KRR+F L           +Y +    KEP+G I L++  
Sbjct: 20  KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCM 79

Query: 149 VREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
               +++ +   FEL                        + Y ++A +  E +EWI  L+
Sbjct: 80  GVVQNNKVRRFAFELKMQD-------------------KSSYLLAADSEVEMEEWITILN 120

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 9  KEGWLWKQGGRY------KSWKRRWFILNDKCLYYFEYTTDKSACLIENSSGRYKSWKRR 62
          K GWL+K           +S+KRR+F L       +     K   + +   G        
Sbjct: 20 KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCM 79

Query: 63 WFILNDKCLYYF 74
            + N+K   + 
Sbjct: 80 GVVQNNKVRRFA 91

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 22/109 (20%)

Query: 100 DKEGWLWKQGGRYKSWKRRWFILNDKCLY-YFEYTTDKEPRGIIPLENIQVREVHDRHKP 158
           +   +L         WK RW  + D  L+ Y +    K  +  + L   +V         
Sbjct: 2   ETSSYLNVLVNS--QWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHL 59

Query: 159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           + F +                         + ++ A ++EE   W+  L
Sbjct: 60  YSFRILHK-------------------GEELAKLEAKSSEEMGHWLGLL 89

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 101 KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPH 159
             G++ K G  +   W+RR+F L    L +       +    +  E   V E   + +  
Sbjct: 12  MHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTME-EIQSVEETQIKERKC 70

Query: 160 CFELFTSGFEFIKACKTDSEGK 181
                  G +F+  C +D E  
Sbjct: 71  LLLKIRGGKQFVLQCDSDPELV 92

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 9  KEGWLWKQGGRY-KSWKRRWFILNDKCLYYFEYTTDKSAC 47
            G++ K G  +   W+RR+F L    L +        + 
Sbjct: 12 MHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSL 51

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 6e-06
 Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 20/118 (16%)

Query: 99  PDKEGWLWKQGGRY--------KSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVR 150
              EG L ++            +SW+  + +L    L +++             E     
Sbjct: 8   EQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSL 67

Query: 151 EVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                     +      F+                    Y   A    E   W++ ++
Sbjct: 68  ARAQGSVAFDYRKRKHVFKLGLQ------------DGKEYLFQAKDEAEMSSWLRVVN 113

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 11/120 (9%)

Query: 88  DGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENI 147
           +G D+         EG L + G +      R   L D  +   +    +           
Sbjct: 16  EGKDIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEY 71

Query: 148 QVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCL 207
           +++E     K           +     +     +++         SA +AEEK+ W+  L
Sbjct: 72  RLKEKFFMRKVQ-------INDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAAL 124

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 41/143 (28%)

Query: 90  NDLMHTFFNPD-------KEGWLWKQGGRYKSWKRRWFILND--------KCLYYFEYTT 134
           N L   F + D        EG L  +  + K+      +L D              +  +
Sbjct: 9   NPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHS 68

Query: 135 ---------DKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEG 185
                     +    ++ L  + +R V        F +  +                  G
Sbjct: 69  KTAVGSSDSKQTFSPVLKLNAVLIRSV--ATDKRAFFIICTS---------------KLG 111

Query: 186 KHTVYRMSAATAEEKDEWIKCLS 208
              +Y + A T+ +K+ W++ L 
Sbjct: 112 PPQIYELVALTSSDKNTWMELLE 134

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 24/116 (20%)

Query: 101 KEGWL--WKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------EPRGIIPLENIQVREV 152
            +     W      +  + R   L +  L + +   D         +  +    + V E 
Sbjct: 15  LQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEH 74

Query: 153 HDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
            +   P  F L+                           + A++ E K +WIK + 
Sbjct: 75  VE-GDPCKFALWVGRTP---------------TSDNKIVLKASSIENKQDWIKHIR 114

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 7e-04
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 20/115 (17%)

Query: 102 EGWLWKQG--------GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH 153
           EG+L ++            +SW   + ++N++ + +++             E     +  
Sbjct: 2   EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61

Query: 154 DRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLS 208
                  +             K     K+       Y   A   EE + WI+ +S
Sbjct: 62  ICEVALDY------------KKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 35/124 (28%)

Query: 102 EGWLWKQGGRYKSWKRRWFILND--------KCLYYFEYTTDKEP---------RGIIPL 144
           EG L  +  R K+      +L D                 +               +I L
Sbjct: 4   EGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKL 63

Query: 145 ENIQVREVHDRHKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWI 204
             + VR+V   +    F +  S                      +Y + A T  EK  W 
Sbjct: 64  STVLVRQVATDN-KALFVISMSDNGA-----------------QIYELVAQTVSEKTVWQ 105

Query: 205 KCLS 208
             + 
Sbjct: 106 DLIC 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.9
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.88
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.87
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.86
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.86
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.86
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.84
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.84
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.83
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.83
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.83
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.82
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.82
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.81
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.81
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.8
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.8
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.8
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.79
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.79
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.75
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.75
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.75
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.73
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.73
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.7
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.67
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.65
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.62
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.59
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.52
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.51
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.5
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.5
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.49
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.48
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.47
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.45
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.43
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.42
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.39
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.39
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.38
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.35
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.34
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.32
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.32
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.29
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.26
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.23
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.2
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.19
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.18
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.18
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.15
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.15
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	99.12
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.85
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.78
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.76
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.19
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.18
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.16
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.03
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	97.97
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.92
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.71
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	97.62
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	97.18
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	95.52
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	92.99
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	92.75
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	91.4
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	90.97
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	83.95

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.4e-23  Score=142.57  Aligned_cols=113  Identities=67%  Similarity=1.316  Sum_probs=96.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCc--eeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGF--EFIKAC  174 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~--~~~~~~  174 (210)
                      .+|.++|||+|+++..+.|++|||||.++.|.||+++.+..|.+.|+|.++++..+.+..++++|++.....  ......
T Consensus         3 ~np~keG~L~K~~~~~k~WkrR~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (127)
T d1fgya_           3 FNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKAC   82 (127)
T ss_dssp             SSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCE
T ss_pred             CCCceEEEEEEECCCCCCcEEEEEEEECCEEEEEccCCCccccceEeCCCeEEEEccCCCCCceEEEecccccccccccc
Confidence            468999999999988889999999999999999999999999999999999998888888889999876542  222333


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .......++.+..+.++|+|+|++|+++||.||++
T Consensus        83 ~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~  117 (127)
T d1fgya_          83 KTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA  117 (127)
T ss_dssp             EECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHH
Confidence            44445566777889999999999999999999985

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-23  Score=138.22  Aligned_cols=91  Identities=37%  Similarity=0.623  Sum_probs=81.2

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEE-ecCCCCcceEEEEeCCceeeeeeecC
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVRE-VHDRHKPHCFELFTSGFEFIKACKTD  177 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~-~~~~~~~~~f~i~~~~~~~~~~~~~~  177 (210)
                      +.++|||.|+++..++|++|||||.++.|+||+++.+..|.+.|+|.++.+.. ....+++++|+|.++.          
T Consensus         4 ~~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~----------   73 (100)
T d1faoa_           4 GTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPF----------   73 (100)
T ss_dssp             TCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEETT----------
T ss_pred             ccEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccCCccCceEEechheEEEEeccccccccccccccCC----------
Confidence            46899999999888899999999999999999999999999999999976544 4455788999998774          


Q ss_pred             CCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       178 ~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                ++|+|+|+|++++++||.||++
T Consensus        74 ----------r~~~l~a~s~~~~~~Wi~ai~~   95 (100)
T d1faoa_          74 ----------RTFYLCAKTGVEADEWIKILRW   95 (100)
T ss_dssp             ----------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ----------eEEEEEeCCHHHHHHHHHHHHH
Confidence                      7999999999999999999985

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=138.48  Aligned_cols=100  Identities=23%  Similarity=0.429  Sum_probs=84.1

Q ss_pred             CcceeeEEeecCc--cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC--CCcceEEEEeCCceeeeee
Q psy17820         99 PDKEGWLWKQGGR--YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        99 ~~~~G~L~k~~~~--~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~--~~~~~f~i~~~~~~~~~~~  174 (210)
                      ++++|||.|++++  .+.|++|||+|.++.|+||+++++..|.+.|+|.++.+..++..  +++++|+|.++..      
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~------   76 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQ------   76 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSC------
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchhhcccccccccccceeEeeccccccccccEEeeeccc------
Confidence            4689999998643  45799999999999999999999999999999999988776543  6889999987743      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                            ..+.+..++|+|+|+|++|+.+|+.||.++
T Consensus        77 ------~~~~~~~r~~~l~a~s~ed~~~W~~al~~A  106 (111)
T d2dyna_          77 ------RNVYKDYRQLELACETQEEVDSWKASFLRA  106 (111)
T ss_dssp             ------SCSBTTBSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             ------cccccCceeEEEECCCHHHHHHHHHHHHHh
Confidence                  223344579999999999999999999864

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.9e-22  Score=134.04  Aligned_cols=93  Identities=20%  Similarity=0.389  Sum_probs=82.5

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC--CCcceEEEEeCCceeeeeeecC
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR--HKPHCFELFTSGFEFIKACKTD  177 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~--~~~~~f~i~~~~~~~~~~~~~~  177 (210)
                      +++|||+++++..+.|++|||+|.++.|+||+++.+..|.+.|+|.++++...+..  +++++|.|.++..         
T Consensus         2 iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~---------   72 (101)
T d2fjla1           2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSV---------   72 (101)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTT---------
T ss_pred             ceEEEEEEEcCCCCCCeEEEEEEECCEEEEEeccccceecceEEcCCceeEeeeeecccccceeEEecccc---------
Confidence            58999999998888999999999999999999998899999999999998876543  5789999987643         


Q ss_pred             CCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       178 ~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                              +.++|+|+|+|++|+.+||.||++
T Consensus        73 --------~~~~~~~~a~s~~e~~~Wi~ai~~   96 (101)
T d2fjla1          73 --------AQWSLDVAADSQEELQDWVKKIRE   96 (101)
T ss_dssp             --------SSCCEEEEESSHHHHHHHHHHHHH
T ss_pred             --------ccEEEEEEeCCHHHHHHHHHHHHH
Confidence                    136899999999999999999986

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-22  Score=140.37  Aligned_cols=112  Identities=21%  Similarity=0.409  Sum_probs=87.2

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee-
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK-  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~-  175 (210)
                      ..++++|||.|+ +..+.|++|||||.++.|+||+++.+..|.+.|+|.++.+...+...+++||+|..+....+.... 
T Consensus         6 ~~~~~~GwLkk~-~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~   84 (130)
T d1v88a_           6 SGIVMADWLKIR-GTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKG   84 (130)
T ss_dssp             SSCCEEEEEEEC-CSSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSC
T ss_pred             CCCeEeCeEEeC-CCCCCceEEEEEEeCCEEEEEcCCCCCcceeEEECCCeEEEEccccCCCceEEEEcCCCcceecccC
Confidence            457899999554 457899999999999999999999999999999999999887777778899999887543322211 


Q ss_pred             --cCCCCceeee-cceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 --TDSEGKVVEG-KHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 --~~~~~~~~~~-~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                        ......++.+ ..+.++|+|+|++|+++||+||+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~  121 (130)
T d1v88a_          85 PKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL  121 (130)
T ss_dssp             TTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHH
T ss_pred             cccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHH
Confidence              1222233332 335578999999999999999985

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.8e-22  Score=135.46  Aligned_cols=90  Identities=29%  Similarity=0.536  Sum_probs=76.2

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEe-cC------CCCcceEEEEeCCceeee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV-HD------RHKPHCFELFTSGFEFIK  172 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~-~~------~~~~~~f~i~~~~~~~~~  172 (210)
                      +++|||.|+++..+.|++|||||.++.|.||+++.+..|.|.|+|.++..... .+      .++++||+|.+++     
T Consensus         2 lk~GwL~k~~~~~~~wkkRwFvL~~~~L~YYk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~-----   76 (112)
T d2coaa1           2 LREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN-----   76 (112)
T ss_dssp             SEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS-----
T ss_pred             ceEEEEEEECCCCCCeeEEEEEEEcceEEEEeccCCCccceEEeeeccccccccccccccccCCCccEEEEEeCC-----
Confidence            58999999999889999999999999999999999999999999998644433 22      2467999998885     


Q ss_pred             eeecCCCCceeeecceEEEE-----------EcCCHHHHHHHHHHHhc
Q psy17820        173 ACKTDSEGKVVEGKHTVYRM-----------SAATAEEKDEWIKCLSL  209 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~r~~~l-----------~a~s~~e~~~Wi~al~~  209 (210)
                                     |+|||           +|++++++++|+.||++
T Consensus        77 ---------------rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~  109 (112)
T d2coaa1          77 ---------------ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQ  109 (112)
T ss_dssp             ---------------CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHH
T ss_pred             ---------------eEEEEecCCccccccccccChHHHHHHHHHHHH
Confidence                           56666           45788999999999986

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4e-21  Score=130.03  Aligned_cols=94  Identities=27%  Similarity=0.576  Sum_probs=83.5

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC-CCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD-RHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+.++|||.|+++..+.|++|||+|.++.|+||+++.+..+.+.|+|.++.+....+ .+++++|.|..++.       
T Consensus         6 ~~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~-------   78 (109)
T d1wgqa_           6 SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGM-------   78 (109)
T ss_dssp             CSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTE-------
T ss_pred             CCCcEEEEEEEECCCCCCceEEEEEEeCCEEEEeccccccccccccccceeeeeecccccccceeeeeecccc-------
Confidence            4578999999999888899999999999999999999888999999999988766554 46789999987653       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  +.|+|+|+|++++++||.||+.
T Consensus        79 ------------~~~~f~a~s~~~~~~Wi~ai~~  100 (109)
T d1wgqa_          79 ------------VFYVFKADDAHSTQRWIDAFQE  100 (109)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------eEEEEECCCHHHHHHHHHHHHH
Confidence                        6899999999999999999985

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=133.33  Aligned_cols=101  Identities=29%  Similarity=0.589  Sum_probs=85.6

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~  173 (210)
                      ..++++|||.|++...+.|++|||+|.++.|+||+++.+..+.+.++|.++.+..+..   .+.+++|+|.....     
T Consensus         6 s~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~-----   80 (118)
T d1v89a_           6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASW-----   80 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCC-----
T ss_pred             CCCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccCcccccceeccCceEEEEeccccccCCCcEEEEecCCC-----
Confidence            3567999999999888999999999999999999999999999999999988876543   35688999987753     


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                             ..+.+..++|+|+|++++|+++|+.||++
T Consensus        81 -------~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~  109 (118)
T d1v89a_          81 -------DQNRMGQDSYVLMASSQAEMEEWVKFLRR  109 (118)
T ss_dssp             -------SSCCSSCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             -------cceecCCcEEEEEcCCHHHHHHHHHHHHH
Confidence                   11233457899999999999999999986

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-20  Score=128.45  Aligned_cols=93  Identities=25%  Similarity=0.552  Sum_probs=81.5

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC--CCCcceEEEEeCCceeeeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      ..+++|||.|++...++|++|||+|.++.|+||+++++..|.+.|+|.++.+.....  ..++++|.|+...+       
T Consensus         4 ~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~~~~p~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~-------   76 (113)
T d1plsa_           4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ-------   76 (113)
T ss_dssp             CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTT-------
T ss_pred             CceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCCccccceEEECccCeEEeeecccCCcceEEEEecCCC-------
Confidence            467999999999888999999999999999999999999999999999987665432  35678899887653       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  +.|+|+|+|++|+++|+.||+.
T Consensus        77 ------------~~~~~~a~s~~e~~~Wi~ai~~   98 (113)
T d1plsa_          77 ------------QDHFFQAAFLEERDAWVRDINK   98 (113)
T ss_dssp             ------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------eEEEEECCCHHHHHHHHHHHHH
Confidence                        7999999999999999999975

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.3e-22  Score=131.56  Aligned_cols=93  Identities=17%  Similarity=0.292  Sum_probs=73.5

Q ss_pred             CcceeeEEeec---CccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         99 PDKEGWLWKQG---GRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        99 ~~~~G~L~k~~---~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      +.++|||.++.   ...+.|++|||+|+++.|+||+.. +..+.+.|+|.+++|...++.++++||+|.++++       
T Consensus         5 ~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~f~i~~~~~-------   76 (101)
T d2elba2           5 TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDCEDRRYCFQITSFDG-------   76 (101)
T ss_dssp             SCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTT-CCCE----EEEECCCCCCCCCCSSSSSEECCCSS-------
T ss_pred             ccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccC-CcccceEEEecccccccccccCCcceEEEEeecc-------
Confidence            56899999874   235689999999999999998866 4568889999988887777778899999987653       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                 .++|+|+|+|++|+++||.||+.+
T Consensus        77 -----------~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          77 -----------KKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             -----------SCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             -----------cceEEEECCCHHHHHHHHHHHHhc
Confidence                       368999999999999999999864

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.5e-20  Score=126.44  Aligned_cols=95  Identities=26%  Similarity=0.565  Sum_probs=80.6

Q ss_pred             cCCcceeeEEeecCc----cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC----CCCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD----RHKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~----~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~----~~~~~~f~i~~~~~  168 (210)
                      ..++++|||.|++..    .+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+.....    .+.+++|.|.++++
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~   86 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK   86 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred             CCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeeccccccCcceEEEecccEEEeeccccccccccceEEEEccCC
Confidence            456799999998642    4589999999999999999999889999999999988766432    24679999987653


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                         +.|+|+|+|++|+++|+.||+.+
T Consensus        87 -------------------~~~~~~a~s~~e~~~W~~ai~~~  109 (111)
T d1u5fa1          87 -------------------RIYQFTAASPKDAEEWVQQLKFI  109 (111)
T ss_dssp             -------------------CEEEEECSSHHHHHHHHHHHHHH
T ss_pred             -------------------cEEEEEcCCHHHHHHHHHHHHHH
Confidence                               79999999999999999999863

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-20  Score=124.84  Aligned_cols=92  Identities=33%  Similarity=0.603  Sum_probs=79.3

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCC----CCcceEEEEeCCceeeee
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDR----HKPHCFELFTSGFEFIKA  173 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~----~~~~~f~i~~~~~~~~~~  173 (210)
                      .++++|||.|+++..++|++|||+|.++.|.||+++.+..|.+.|+|.++.+......    ...++|.|.+++      
T Consensus         2 ~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~------   75 (103)
T d1eaza_           2 AVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS------   75 (103)
T ss_dssp             CCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS------
T ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEecccCcccceEEEccceEEeeccccccccccceEEEEEeCC------
Confidence            3579999999998888999999999999999999998889999999998765443322    567888888664      


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ++|+|+|+|++|+++|+.||+.
T Consensus        76 --------------~~~~~~a~s~~e~~~W~~aI~~   97 (103)
T d1eaza_          76 --------------RTFYVQADSPEEMHSWIKAVSG   97 (103)
T ss_dssp             --------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             --------------EEEEEEeCCHHHHHHHHHHHHH
Confidence                          6999999999999999999985

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.6e-20  Score=125.32  Aligned_cols=92  Identities=29%  Similarity=0.660  Sum_probs=79.5

Q ss_pred             CcceeeEEeecC-ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeeee
Q psy17820         99 PDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKAC  174 (210)
Q Consensus        99 ~~~~G~L~k~~~-~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~~  174 (210)
                      +.++|||.|+++ ..+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+..+..   .+.+++|.+.+++.      
T Consensus         9 ~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~------   82 (107)
T d1upqa_           9 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGM------   82 (107)
T ss_dssp             EEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTS------
T ss_pred             eeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCcccccccceecccceEEEEeccCcccCcceEEEEEcCCC------
Confidence            468999999874 46789999999999999999999999999999999988876542   35678888877653      


Q ss_pred             ecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        175 KTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       175 ~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                   +.|+|+|+|++|+++|+.||++
T Consensus        83 -------------~~~~~~a~s~~e~~~Wi~al~~  104 (107)
T d1upqa_          83 -------------RTYVLAADTLEDLRGWLRALGR  104 (107)
T ss_dssp             -------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------eEEEEEcCCHHHHHHHHHHHHH
Confidence                         7899999999999999999975

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=132.30  Aligned_cols=91  Identities=13%  Similarity=0.261  Sum_probs=78.8

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEec-C-CCCcceEEEEeCCceeeeeeec
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVH-D-RHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~-~-~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      ..++|||.|++...++|++|||||+++.|+||+++.+..|.+.|+|.++.+.... + .+.+++|.|.++.         
T Consensus        11 ~~~eG~L~k~~~~~k~WkkrwfvL~~~~L~yY~~~~d~~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~---------   81 (136)
T d1x1fa1          11 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK---------   81 (136)
T ss_dssp             EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSS---------
T ss_pred             ccEEEEEEEECCCCCCeEEEEEEEcCCEeEEEeecccccccccccccceeeeeeecccccccceeeecCCC---------
Confidence            3479999999988899999999999999999999999999999999987544433 2 3567999998764         


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                 +.|+|+|+|++|+++|+.+|+.
T Consensus        82 -----------~~~~f~Aes~~e~~~Wi~~I~~  103 (136)
T d1x1fa1          82 -----------EEVQLKTENTESGEEWRGFILT  103 (136)
T ss_dssp             -----------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             -----------ceEEEEeCCHHHHHHHHHHHHH
Confidence                       5899999999999999999975

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-20  Score=123.17  Aligned_cols=89  Identities=19%  Similarity=0.363  Sum_probs=77.8

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCC
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDS  178 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~  178 (210)
                      .++|||.+.+.  +.|++|||+|.++.|+||+++.+ ..|.+.++|.++.+...++.+++++|.+.+++.          
T Consensus         2 ~~s~yl~~~~~--~~WkkR~fvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~f~~~~~~~----------   69 (95)
T d2cofa1           2 ETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGE----------   69 (95)
T ss_dssp             TTCCEEEEEET--TEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCBTTBSCEEEEEETTE----------
T ss_pred             CcccchhhhcC--CCceEEEEEEECCEEEEEecccccccccccccccceEEEecccccceecceeccccc----------
Confidence            36899999874  67999999999999999998754 458899999999988777777889999887753          


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                               ++|+|+|+|++|+++||.+|++
T Consensus        70 ---------~~~~l~A~s~~e~~~Wi~~L~~   91 (95)
T d2cofa1          70 ---------ELAKLEAKSSEEMGHWLGLLLS   91 (95)
T ss_dssp             ---------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------eeEEeeCCCHHHHHHHHHHHHH
Confidence                     7999999999999999999985

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.4e-20  Score=123.99  Aligned_cols=87  Identities=26%  Similarity=0.552  Sum_probs=76.3

Q ss_pred             cceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecCC
Q psy17820        100 DKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTDS  178 (210)
Q Consensus       100 ~~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~  178 (210)
                      +++|||.|+++. .+.|++|||+|.++.|.||+++++..|.+.|+|.++.+...   .++++|.|.+++           
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~~~~~~~~i~L~~~~~~~~---~~~~~f~i~~~~-----------   67 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRV---QGDNKFEVVTTQ-----------   67 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEE---ETTTEEEEEESS-----------
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccCcceeEEEEEchhceeecc---ccceeEEEEcCC-----------
Confidence            589999999854 56899999999999999999999999999999999876554   346899998764           


Q ss_pred             CCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        179 EGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       179 ~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                               ++|+|+|+|++|+++|+.||+.
T Consensus        68 ---------~~~~l~a~s~~e~~~Wi~ai~~   89 (102)
T d2coda1          68 ---------RTFVFRVEKEEERNDWISILLN   89 (102)
T ss_dssp             ---------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------cEEEEEeCCHHHHHHHHHHHHH
Confidence                     6899999999999999999975

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3e-20  Score=123.34  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCC---EEEEeccCCCCCceeEEEeCCeEEEEecC---CCCcceEEEEeCCceeeee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKEPRGIIPLENIQVREVHD---RHKPHCFELFTSGFEFIKA  173 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~---~L~yy~~~~~~~~~~~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~  173 (210)
                      ++.|||.++.+ .++|++|||||+++   .|+||+++.+..|.+.|+|.++.+.....   .+++++|.|.+++      
T Consensus         2 ~~~G~L~~~~~-~k~W~krwfvL~~~~~~~ly~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~------   74 (99)
T d2coca1           2 LLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK------   74 (99)
T ss_dssp             SSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT------
T ss_pred             ceEEEEEccCC-CCCccEEEEEEecCCccEEEEECcCccccccccccccceeeeecccccccCCceEEEEEcCC------
Confidence            47899999875 47999999999876   58999999999999999999988765433   3578899987764      


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ++|+|+|+|++|+++||.||++
T Consensus        75 --------------r~~~l~A~s~~e~~~Wi~aL~~   96 (99)
T d2coca1          75 --------------QSWYLSASSAELQQQWLETLST   96 (99)
T ss_dssp             --------------EEEEEEESSHHHHHHHHHHHHH
T ss_pred             --------------cEEEEECCCHHHHHHHHHHHHH
Confidence                          7999999999999999999985

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=126.24  Aligned_cols=92  Identities=26%  Similarity=0.614  Sum_probs=78.4

Q ss_pred             cceeeEEeecCc----cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC----CCCcceEEEEeCCceee
Q psy17820        100 DKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD----RHKPHCFELFTSGFEFI  171 (210)
Q Consensus       100 ~~~G~L~k~~~~----~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~----~~~~~~f~i~~~~~~~~  171 (210)
                      +++|||.|++..    .+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+.....    .+++++|.|.+.++   
T Consensus         2 ik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~---   78 (106)
T d1u5da1           2 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDR---   78 (106)
T ss_dssp             EEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSS---
T ss_pred             eEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEecccccccccccccCCceEeeccccccccCCceeEEEEcCCC---
Confidence            589999987642    3479999999999999999999999999999999988766543    25678999987653   


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                      ++++|+|+|++|+++|++||+.+
T Consensus        79 ----------------~~~~f~a~s~~e~~~W~~ai~~~  101 (106)
T d1u5da1          79 ----------------RTYEFTATSPAEARDWVDQISFL  101 (106)
T ss_dssp             ----------------CCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ----------------cEEEEEeCCHHHHHHHHHHHHHH
Confidence                            68999999999999999999863

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.6e-20  Score=130.36  Aligned_cols=94  Identities=30%  Similarity=0.486  Sum_probs=78.3

Q ss_pred             cCCcceeeEEeecCc------cCCeeEEEEEEeCC-----EEEEeccCC-CCCceeEEEeCCeEEEEecCCCCcceEEEE
Q psy17820         97 FNPDKEGWLWKQGGR------YKSWKRRWFILNDK-----CLYYFEYTT-DKEPRGIIPLENIQVREVHDRHKPHCFELF  164 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~------~~~wk~r~fvL~~~-----~L~yy~~~~-~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~  164 (210)
                      ..++++|||+|++..      .+.|++|||||.++     .|.||+++. +..|.+.|+|..+.+....+..++++|.|.
T Consensus        16 ~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~F~i~   95 (150)
T d1wg7a_          16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELK   95 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCCSSCTTEEEEE
T ss_pred             CCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEeccccccccccccccccccccccCccccceEEEEE
Confidence            567899999998742      36899999999854     477777654 567999999999988777777788999998


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .++.                   +.|+|+|+|++|+++||.||++
T Consensus        96 ~~~~-------------------~~~~l~A~s~~e~~~Wi~aL~~  121 (150)
T d1wg7a_          96 MQDK-------------------SSYLLAADSEVEMEEWITILNK  121 (150)
T ss_dssp             CSSS-------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             cCCC-------------------eEEEEEeCCHHHHHHHHHHHHH
Confidence            7653                   7899999999999999999985

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.6e-19  Score=122.24  Aligned_cols=94  Identities=27%  Similarity=0.562  Sum_probs=76.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEe--CCEEEEeccCCCCCceeEEEeCCeEEEEecCC--------CCcceEEEEeC
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKEPRGIIPLENIQVREVHDR--------HKPHCFELFTS  166 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~--~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~--------~~~~~f~i~~~  166 (210)
                      ..+.++|||.|++...+.|++|||+|.  +..|+||+++++..|.+.|+|.++.+......        ...++|.+.++
T Consensus         6 s~~~~eG~L~k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   85 (117)
T d1v5ua_           6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT   85 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES
T ss_pred             CCCeEEEEEEEECCCCCCceEEEEEEeCCCCEEEecccccccCcceEEEecceEEEeecccccccccccccceEEEeeCC
Confidence            356789999999988889999999995  46899999999999999999999876554221        12345555444


Q ss_pred             CceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        167 GFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                                          .++|+|+|+|++|+++||.+|+++
T Consensus        86 --------------------~~~~~~~a~s~~e~~~Wv~~l~~a  109 (117)
T d1v5ua_          86 --------------------RRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             --------------------SCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             --------------------CcEEEEEeCCHHHHHHHHHHHHHH
Confidence                                479999999999999999999864

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-19  Score=118.81  Aligned_cols=91  Identities=37%  Similarity=0.628  Sum_probs=74.9

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCC--EEEEeccCCCCCceeEEEeCCeEEEEecCC------CCcceEEEEeCCceee
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDK--CLYYFEYTTDKEPRGIIPLENIQVREVHDR------HKPHCFELFTSGFEFI  171 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~--~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~------~~~~~f~i~~~~~~~~  171 (210)
                      +++|||.|+++..++|++|||+|.++  .++|++++.+..|.+.|++.++.+..+...      ..+++|.+.++++   
T Consensus         3 ~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   79 (104)
T d2i5fa1           3 IKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE---   79 (104)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTC---
T ss_pred             EEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCccccCccceEeecceEEEEeccCcccccccCccEEEEECCCC---
Confidence            58999999998888999999999875  456667777788999999999887765432      4567788776653   


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                      +.|+|+|+|++|+.+|+.||+.
T Consensus        80 ----------------~~~~~~a~s~~e~~~W~~ai~~  101 (104)
T d2i5fa1          80 ----------------VHYFLQAATPKERTEWIKAIQM  101 (104)
T ss_dssp             ----------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             ----------------eEEEEEcCCHHHHHHHHHHHHH
Confidence                            7899999999999999999985

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-19  Score=125.56  Aligned_cols=90  Identities=24%  Similarity=0.484  Sum_probs=69.3

Q ss_pred             cceeeEEee----------cCccCCeeEEEEEEeCCEEEEeccCCC----CCceeEEEeCCeEEEEecC-CCCcceEEEE
Q psy17820        100 DKEGWLWKQ----------GGRYKSWKRRWFILNDKCLYYFEYTTD----KEPRGIIPLENIQVREVHD-RHKPHCFELF  164 (210)
Q Consensus       100 ~~~G~L~k~----------~~~~~~wk~r~fvL~~~~L~yy~~~~~----~~~~~~i~L~~~~v~~~~~-~~~~~~f~i~  164 (210)
                      .++|||.++          +...+.|++|||||+++.|+||+++.+    ..|.+.|+|.++.+....+ .+++++|.|.
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i~   81 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLT   81 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEEE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEEEEcccccccCceeEEe
Confidence            489999843          234568999999999999999997654    3477889999998876554 4688999998


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++                    ++|+|+|+|++|+++||.||+.
T Consensus        82 ~~~--------------------~~~~f~A~s~~e~~~Wi~ai~~  106 (133)
T d2j59m1          82 TSD--------------------CECLFQAEDRDDMLAWIKTIQE  106 (133)
T ss_dssp             CSS--------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             cCC--------------------CEEEEEeCCHHHHHHHHHHHHH
Confidence            774                    5899999999999999999974

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.2e-19  Score=136.43  Aligned_cols=94  Identities=27%  Similarity=0.572  Sum_probs=81.3

Q ss_pred             cCCcceeeEEeecC----ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecC----CCCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHD----RHKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~----~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~----~~~~~~f~i~~~~~  168 (210)
                      ..++++|||.|++.    ..+.|++|||+|.++.|+||++..+..|.+.|+|.++.+..++.    ..+++||.|++++.
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~  181 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  181 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCCCCccceEEEecceeeeeccccccccCCCcEEEEEcCCC
Confidence            45678999999874    24689999999999999999999999999999999998876543    24679999988753


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                         |.|+|+|+|+++++.|+.||+.
T Consensus       182 -------------------r~~~f~a~s~~e~~~Wi~al~~  203 (209)
T d1u5ea1         182 -------------------RIYQFTAASPKDAEEWVQQLKF  203 (209)
T ss_dssp             -------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -------------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                               7999999999999999999985

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=3.8e-19  Score=122.11  Aligned_cols=92  Identities=23%  Similarity=0.360  Sum_probs=72.2

Q ss_pred             cCCcceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeee
Q psy17820         97 FNPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACK  175 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~  175 (210)
                      .+++++|||.|+++. .+.|++|||||.++.|+||+++.+  +.+.|.|..+..........+++|.+.++.+       
T Consensus         8 ~~~i~eG~L~K~g~~~~~~WkkR~fvL~~~~L~yy~~~~~--~~~~i~l~~~~~v~~~~~~~~~~f~i~~~~~-------   78 (119)
T d1omwa2           8 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEA--PQSLLTMEEIQSVEETQIKERKCLLLKIRGG-------   78 (119)
T ss_dssp             SCCCEEEEEEECC------CEEEEEEEETTEEEEECTTSC--CCEEEEGGGEEEEEEEESSSCEEEEEEETTS-------
T ss_pred             CCeEEEEEEEEECCCCCCCeEEEEEEEEcCeEEEEecccc--cCccceeccccccccccccccceEEEEcCCC-------
Confidence            556899999999864 457999999999999999987654  4567888876555544556678899887653       


Q ss_pred             cCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        176 TDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       176 ~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  ++|+|+|+|++|+.+|+.||+.
T Consensus        79 ------------~~~~f~a~s~~e~~~W~~al~~  100 (119)
T d1omwa2          79 ------------KQFVLQCDSDPELVQWKKELRD  100 (119)
T ss_dssp             ------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------cEEEEECCCHHHHHHHHHHHHH
Confidence                        7999999999999999999975

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-19  Score=119.26  Aligned_cols=87  Identities=30%  Similarity=0.514  Sum_probs=72.1

Q ss_pred             CcceeeEEeecCccCCeeEEEEEEeCC-------EEEEeccC-----CCCCceeEEEeCCeEEEE-ecCCCCcceEEEEe
Q psy17820         99 PDKEGWLWKQGGRYKSWKRRWFILNDK-------CLYYFEYT-----TDKEPRGIIPLENIQVRE-VHDRHKPHCFELFT  165 (210)
Q Consensus        99 ~~~~G~L~k~~~~~~~wk~r~fvL~~~-------~L~yy~~~-----~~~~~~~~i~L~~~~v~~-~~~~~~~~~f~i~~  165 (210)
                      +.++|||.|+    ++|++|||+|.+.       .|.||+++     ....|.+.|+|.++.... ....+.+++|+|.+
T Consensus         2 v~k~GyL~K~----k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~t   77 (103)
T d1qqga1           2 VRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALYT   77 (103)
T ss_dssp             EEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEEE
T ss_pred             cceeEEEEEc----CCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCCCceEEEEEe
Confidence            5689999875    5899999999864       59999865     345688999999986544 44457789999987


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++                    ++|+|+|+|++|+++||.||++
T Consensus        78 ~~--------------------r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          78 RD--------------------EHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             SS--------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CC--------------------eEEEEEcCCHHHHHHHHHHHHh
Confidence            74                    6999999999999999999986

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.9e-19  Score=128.92  Aligned_cols=92  Identities=23%  Similarity=0.323  Sum_probs=72.4

Q ss_pred             CCcceeeEEeecCcc-----CCeeEEEEEEeCCEEEEeccCCCC----CceeEEEeCCeEEEEecCC-------------
Q psy17820         98 NPDKEGWLWKQGGRY-----KSWKRRWFILNDKCLYYFEYTTDK----EPRGIIPLENIQVREVHDR-------------  155 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~-----~~wk~r~fvL~~~~L~yy~~~~~~----~~~~~i~L~~~~v~~~~~~-------------  155 (210)
                      .++++|||.|++...     .+|++|||||.++.|+||+++.+.    .+.|.|+|.++.++...+.             
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~   81 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             cEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCcccccccc
Confidence            367999999998532     269999999999999999876543    4889999999876543221             


Q ss_pred             --------------CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        156 --------------HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       156 --------------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ...++|+|+++                    .|+|+|+|+|++|+++||+||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~F~I~t~--------------------~rt~~l~A~s~eE~~~WI~aL~~  129 (169)
T d1btka_          82 GEESSEMEQISIIERFPYPFQVVYD--------------------EGPLYVFSPTEELRKRWIHQLKN  129 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEET--------------------TCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCcceEEEeC--------------------CcEEEEECCCHHHHHHHHHHHHH
Confidence                          23456666554                    47999999999999999999985

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=124.06  Aligned_cols=95  Identities=29%  Similarity=0.519  Sum_probs=74.2

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCE--EEEec-cCCCCCceeEEEeCCeEEEEecCC---------CCcceEEEE
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYFE-YTTDKEPRGIIPLENIQVREVHDR---------HKPHCFELF  164 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~--L~yy~-~~~~~~~~~~i~L~~~~v~~~~~~---------~~~~~f~i~  164 (210)
                      .+++++|||.|++...+.|++|||+|.+..  ++||. +.....|.+.|+|.++.+..+...         ...++|.|+
T Consensus         9 ~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~   88 (116)
T d1x1ga1           9 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI   88 (116)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred             CCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEeccccccccceeEEEcCCCEEEEecccCcccccccccccceeEEE
Confidence            456799999999988899999999997643  44454 334467899999999877655432         235677777


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +++                   .+.|+|+|+|++|+++|+.||+++
T Consensus        89 ~~~-------------------~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          89 TKD-------------------DTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             CTT-------------------CCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             eCC-------------------CeEEEEECCCHHHHHHHHHHHHhh
Confidence            664                   378999999999999999999874

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.5e-18  Score=120.15  Aligned_cols=94  Identities=20%  Similarity=0.373  Sum_probs=68.6

Q ss_pred             cCCcceeeEEeec-CccCCeeEEEEEE--eCCEEEEeccCCCCCceeEE-----EeCCeEEEE-ecC---CCCcceEEEE
Q psy17820         97 FNPDKEGWLWKQG-GRYKSWKRRWFIL--NDKCLYYFEYTTDKEPRGII-----PLENIQVRE-VHD---RHKPHCFELF  164 (210)
Q Consensus        97 ~~~~~~G~L~k~~-~~~~~wk~r~fvL--~~~~L~yy~~~~~~~~~~~i-----~L~~~~v~~-~~~---~~~~~~f~i~  164 (210)
                      .+..++|||.|++ ...+.|+||||||  +++.|+||+++.+..+.+.+     .+..+.... ...   ....++|.+.
T Consensus        13 ~~~~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (126)
T d1v5pa_          13 RQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN   92 (126)
T ss_dssp             CCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE
T ss_pred             CCCceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEc
Confidence            4446799999987 4567999999999  47899999988766655544     444433222 211   1345677765


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      ++                    .+.|+|+|+|++|+++||.||+++
T Consensus        93 ~~--------------------~r~~~l~Aes~~e~~~Wi~aL~~A  118 (126)
T d1v5pa_          93 AL--------------------SQRYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             CS--------------------SCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CC--------------------CeeEEEECCCHHHHHHHHHHHHHH
Confidence            54                    479999999999999999999864

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.1e-19  Score=120.89  Aligned_cols=97  Identities=25%  Similarity=0.488  Sum_probs=74.4

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeC-CEEEEeccCCCCCceeEEEeCCeEEE----EecCCCCcceEEEEeCCceee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILND-KCLYYFEYTTDKEPRGIIPLENIQVR----EVHDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~-~~L~yy~~~~~~~~~~~i~L~~~~v~----~~~~~~~~~~f~i~~~~~~~~  171 (210)
                      ..++++|||.|+++..+.|++|||||.+ +.|+||+++.+..+.+.|+|..+.+.    .....+++++|.|......  
T Consensus         5 ~~v~k~G~L~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~--   82 (118)
T d1unqa_           5 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWT--   82 (118)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETT--
T ss_pred             CCEEEEEEEEEECCCCCCcEEEEEEEeccceeEEEeeccCccccccccccceEEeecccccccccCCceEEEEecccc--
Confidence            3567899999999888999999999975 57888888877777777777654432    1223456789998755321  


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    ..+.++|+|+|++|+++|+.||+.
T Consensus        83 --------------~~~~~~f~a~s~~e~~~Wi~ai~~  106 (118)
T d1unqa_          83 --------------TVIERTFHVETPEEREEWTTAIQT  106 (118)
T ss_dssp             --------------EEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             --------------ceeEEEEEeCCHHHHHHHHHHHHH
Confidence                          125789999999999999999985

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.75  E-value=7.4e-18  Score=112.99  Aligned_cols=91  Identities=22%  Similarity=0.401  Sum_probs=74.1

Q ss_pred             ceeeEEeecC--------ccCCeeEEEEEEeCCEEEEeccCCC------CCceeEEEeCCeEEEEecC-CCCcceEEEEe
Q psy17820        101 KEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTD------KEPRGIIPLENIQVREVHD-RHKPHCFELFT  165 (210)
Q Consensus       101 ~~G~L~k~~~--------~~~~wk~r~fvL~~~~L~yy~~~~~------~~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~  165 (210)
                      ++|||.++..        ..++|++|||+|.++.|+||+++.+      ..+.+.|+|.++.+....+ ..++++|.|.+
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~   80 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeeccccccCcceEeecc
Confidence            4899998731        2347999999999999999997642      4467789999988766554 46789999988


Q ss_pred             CCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhcC
Q psy17820        166 SGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSLH  210 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~~  210 (210)
                      +++                   +.|+|+|+|++|+++|+.||+.+
T Consensus        81 ~~~-------------------~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          81 SDG-------------------NEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTS-------------------CEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCC-------------------CEEEEECCCHHHHHHHHHHHHhC
Confidence            754                   68999999999999999999864

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.8e-18  Score=118.71  Aligned_cols=92  Identities=17%  Similarity=0.426  Sum_probs=68.5

Q ss_pred             CCcceeeEEeecC-ccCCeeEEEEEEeCCE--EEEeccC--CCCCceeEEEeCCeEEEEecCC----CCcceEEEEeCCc
Q psy17820         98 NPDKEGWLWKQGG-RYKSWKRRWFILNDKC--LYYFEYT--TDKEPRGIIPLENIQVREVHDR----HKPHCFELFTSGF  168 (210)
Q Consensus        98 ~~~~~G~L~k~~~-~~~~wk~r~fvL~~~~--L~yy~~~--~~~~~~~~i~L~~~~v~~~~~~----~~~~~f~i~~~~~  168 (210)
                      ...++|||+|++. ..+.|++|||||.++.  ++|+.+.  ....|.+.|.|..+.+......    ...+.|.+.+.  
T Consensus         7 ~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~--   84 (126)
T d1wi1a_           7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE--   84 (126)
T ss_dssp             CEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS--
T ss_pred             CCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEcccccccccceeeeeeceeeeeeccccccccccceeEEeccC--
Confidence            3468999999986 4579999999997654  4444433  3456889999999887664332    23444555443  


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                        .++|+|+|+|++|+++||.||++
T Consensus        85 ------------------~r~~~f~A~s~~e~~~Wv~al~~  107 (126)
T d1wi1a_          85 ------------------GDTVIFASDDEQDRILWVQAMYR  107 (126)
T ss_dssp             ------------------SCEEEEECSSHHHHHHHHHHHHH
T ss_pred             ------------------CeEEEEEECCHHHHHHHHHHHHH
Confidence                              37999999999999999999975

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-18  Score=121.89  Aligned_cols=86  Identities=20%  Similarity=0.235  Sum_probs=71.8

Q ss_pred             CCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEecCCCCcceEEEEeCCceeeeeeecC
Q psy17820         98 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFIKACKTD  177 (210)
Q Consensus        98 ~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~  177 (210)
                      ..+++|||.|+++  ..|++|||+|+++.|.||+++.+..+.|.|+|..+.....   ..+++|.|.+++          
T Consensus        47 ~ilK~G~L~Kr~~--~~wkkR~FvL~~~~L~YYkd~~~~~~kG~I~L~~~~~v~~---~~~~~F~I~t~~----------  111 (147)
T d1w1ha_          47 LILKMGPVDKRKG--LFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEA---KNFKTFFVHTPN----------  111 (147)
T ss_dssp             CEEEEEEEEECCT--TSCEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEE---EETTEEEEECSS----------
T ss_pred             eEEEEEEEEeecC--CcceEEEEEEcCCeeEEEeCCCcccccceEEecccccccc---ccCceEEEecCc----------
Confidence            3578999999875  4799999999999999999998889999999987644333   345799998774          


Q ss_pred             CCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        178 SEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       178 ~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                |+|+|+|++ .|+.+||.||+.
T Consensus       112 ----------Rty~l~a~~-~d~~~Wv~aI~~  132 (147)
T d1w1ha_         112 ----------RTYYLMDPS-GNAHKWCRKIQE  132 (147)
T ss_dssp             ----------CEEEEECTT-SCHHHHHHHHHH
T ss_pred             ----------eEEEEEcCh-HHHHHHHHHHHH
Confidence                      799999865 689999999985

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.1e-18  Score=119.61  Aligned_cols=95  Identities=20%  Similarity=0.306  Sum_probs=75.7

Q ss_pred             ccCCcceeeEEee--------cCccCCeeEEEEEEeCC------EEEEeccCCCCCceeEEEeCCeEEEE----ecCCCC
Q psy17820         96 FFNPDKEGWLWKQ--------GGRYKSWKRRWFILNDK------CLYYFEYTTDKEPRGIIPLENIQVRE----VHDRHK  157 (210)
Q Consensus        96 ~~~~~~~G~L~k~--------~~~~~~wk~r~fvL~~~------~L~yy~~~~~~~~~~~i~L~~~~v~~----~~~~~~  157 (210)
                      ..++.++|||.++        +++.+.|++|||||.++      .|.||+++.+..|.+.|.|..+....    .+..++
T Consensus        15 ~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~   94 (136)
T d1v5ma_          15 LVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEK   94 (136)
T ss_dssp             SCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCC
T ss_pred             cceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCcccccCcCcceecccceeeeeeccccCCCC
Confidence            3567899999754        13456899999999875      58899999999999999998754322    223467


Q ss_pred             cceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        158 PHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       158 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +++|.|.+++.                   +.|+|+|+|++|+++||.+|+.
T Consensus        95 ~~~F~l~t~~~-------------------~~y~f~A~s~~e~~~Wv~ai~~  127 (136)
T d1v5ma_          95 DNTFVLKVENG-------------------AEYILETIDSLQKHSWVADIQG  127 (136)
T ss_dssp             TTEECCBCTTS-------------------CBEEEECSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCC-------------------cEEEEECCCHHHHHHHHHHHHH
Confidence            89999987753                   5799999999999999999985

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.70  E-value=5.4e-17  Score=111.56  Aligned_cols=93  Identities=19%  Similarity=0.343  Sum_probs=72.2

Q ss_pred             CCcceeeEEeecC--------ccCCeeEEEEEEeCCEEEEeccCCC------CCceeEEEeCCeEEEEecC-CCCcceEE
Q psy17820         98 NPDKEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTD------KEPRGIIPLENIQVREVHD-RHKPHCFE  162 (210)
Q Consensus        98 ~~~~~G~L~k~~~--------~~~~wk~r~fvL~~~~L~yy~~~~~------~~~~~~i~L~~~~v~~~~~-~~~~~~f~  162 (210)
                      .+.++|||.++..        ..+.|++|||+|+++.|+||+++.+      ..+...+.+..+.+...++ ..++++|.
T Consensus         7 g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   86 (123)
T d1wjma_           7 GEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFK   86 (123)
T ss_dssp             CCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEEE
T ss_pred             CCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEecccccccCcEEE
Confidence            3568999988642        2458999999999999999986532      2234556677777666554 46789999


Q ss_pred             EEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        163 LFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       163 i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |.+.+.                   +.|+|+|+|++|+++||.||+.
T Consensus        87 i~~~~~-------------------~~~~l~a~s~~e~~~Wi~aI~~  114 (123)
T d1wjma_          87 LGLQDG-------------------KEYLFQAKDEAEMSSWLRVVNA  114 (123)
T ss_dssp             EECSSS-------------------CEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEcCCC-------------------cEEEEECCCHHHHHHHHHHHHH
Confidence            887653                   7899999999999999999985

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=5.9e-17  Score=111.28  Aligned_cols=93  Identities=13%  Similarity=0.300  Sum_probs=70.9

Q ss_pred             CCcceeeEEeecC--------ccCCeeEEEEEEeCCEEEEeccCCCCC--------ceeEEEeCCeEEEEec-CCCCcce
Q psy17820         98 NPDKEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTDKE--------PRGIIPLENIQVREVH-DRHKPHC  160 (210)
Q Consensus        98 ~~~~~G~L~k~~~--------~~~~wk~r~fvL~~~~L~yy~~~~~~~--------~~~~i~L~~~~v~~~~-~~~~~~~  160 (210)
                      ...++|||.++..        ..++|++|||||+++.|+||+++.+..        +...+.+.++.+.... ....+++
T Consensus         7 ~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   86 (122)
T d1droa_           7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHV   86 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTE
T ss_pred             CcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEeccccccccce
Confidence            3568999998752        233799999999999999999875432        3344555565554433 3467889


Q ss_pred             EEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        161 FELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       161 f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      |.|.+++.                   +.|+|+|+|++|+++||.||+.
T Consensus        87 ~~l~~~~~-------------------~~~~f~a~s~~d~~~Wv~al~~  116 (122)
T d1droa_          87 LRVKLANG-------------------ALFLLQAHDDTEMSQWVTSLKA  116 (122)
T ss_dssp             EEEECSSS-------------------CEEEEECSSSHHHHHHHHHHHH
T ss_pred             EEEECCCC-------------------cEEEEECCCHHHHHHHHHHHHH
Confidence            99988753                   6899999999999999999985

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=108.32  Aligned_cols=39  Identities=26%  Similarity=0.509  Sum_probs=36.6

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      +|+|||.|+|+..++||||||||++++|+||+++++..+
T Consensus         2 lk~GwL~k~~~~~~~wkkRwFvL~~~~L~YYk~~~~~~p   40 (112)
T d2coaa1           2 LREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRY   40 (112)
T ss_dssp             SEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSC
T ss_pred             ceEEEEEEECCCCCCeeEEEEEEEcceEEEEeccCCCcc
Confidence            689999999999999999999999999999999988764

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=8.4e-16  Score=105.90  Aligned_cols=43  Identities=81%  Similarity=1.630  Sum_probs=40.2

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      ||.||.|+|||.|+|+..++|+||||||+++.|.||+++.+..
T Consensus         1 ~~~np~keG~L~K~~~~~k~WkrR~fvL~~~~L~yy~~~~~~~   43 (127)
T d1fgya_           1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKE   43 (127)
T ss_dssp             CCSSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSS
T ss_pred             CCCCCceEEEEEEECCCCCCcEEEEEEEECCEEEEEccCCCcc
Confidence            6889999999999999999999999999999999999887765

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-15  Score=99.63  Aligned_cols=75  Identities=27%  Similarity=0.434  Sum_probs=53.7

Q ss_pred             CCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCcce--------------ecccceeEEEech
Q psy17820          6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGR--------------YKSWKRRWFILND   68 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~--------------~~~~~~~~~~~~~   68 (210)
                      -+.|+|||.|+|+..++|++|||||+++.|.||+++++..+ +.|  ..+.+.              ..+.+..++.+++
T Consensus         3 ~~~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~r~~~l~a~s   82 (100)
T d1faoa_           3 LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKT   82 (100)
T ss_dssp             TTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEETTEEEEEECSS
T ss_pred             CccEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccCCccCceEEechheEEEEeccccccccccccccCCeEEEEEeCC
Confidence            36899999999999999999999999999999999887654 222  222211              1112334555554


Q ss_pred             h--HHHHHHhhhcC
Q psy17820         69 K--CLYYFEYTTDK   80 (210)
Q Consensus        69 ~--~~~~~~~i~~~   80 (210)
                      .  +..|+.+|+.+
T Consensus        83 ~~~~~~Wi~ai~~~   96 (100)
T d1faoa_          83 GVEADEWIKILRWK   96 (100)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            4  88999988753

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.5e-15  Score=97.07  Aligned_cols=76  Identities=21%  Similarity=0.346  Sum_probs=55.4

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-cccc--CCcc-----------------eecccceeEE
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIE--NSSG-----------------RYKSWKRRWF   64 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~--~~~~-----------------~~~~~~~~~~   64 (210)
                      +.++++|||+|+|+..++|++|||||+++.|.||+++++..+ +.|.  ....                 ...+...+++
T Consensus         1 s~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~   80 (103)
T d1eaza_           1 SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYV   80 (103)
T ss_dssp             CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEE
T ss_pred             CceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEecccCcccceEEEccceEEeeccccccccccceEEEEEeCCEEEEE
Confidence            468999999999999999999999999999999998877543 2221  1111                 1223345566


Q ss_pred             Eechh--HHHHHHhhhcC
Q psy17820         65 ILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~   80 (210)
                      .+++.  +..|+++|..+
T Consensus        81 ~a~s~~e~~~W~~aI~~a   98 (103)
T d1eaza_          81 QADSPEEMHSWIKAVSGA   98 (103)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHH
Confidence            66554  88999988754

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-14  Score=99.74  Aligned_cols=41  Identities=22%  Similarity=0.460  Sum_probs=35.4

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      +.++++|||.|++ ..++|+||||||++++|+||+++++..+
T Consensus         6 ~~~~~~GwLkk~~-~~k~WkkRwfvL~~~~L~yyk~~~~~~~   46 (130)
T d1v88a_           6 SGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQW   46 (130)
T ss_dssp             SSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSSCCC
T ss_pred             CCCeEeCeEEeCC-CCCCceEEEEEEeCCEEEEEcCCCCCcc
Confidence            5789999996654 5889999999999999999999887653

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.9e-14  Score=95.96  Aligned_cols=79  Identities=23%  Similarity=0.381  Sum_probs=56.7

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEe--CCEEEEEeecCCccc-ccccCCcc-----------------------eecc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILN--DKCLYYFEYTTDKSA-CLIENSSG-----------------------RYKS   58 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~--~~~L~Yy~~~~~~~~-~~i~~~~~-----------------------~~~~   58 (210)
                      +.+.++|||.|++...+.||+|||||+  ++.|+||+++++..+ +.|....+                       ....
T Consensus         6 s~~~~eG~L~k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   85 (117)
T d1v5ua_           6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT   85 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES
T ss_pred             CCCeEEEEEEEECCCCCCceEEEEEEeCCCCEEEecccccccCcceEEEecceEEEeecccccccccccccceEEEeeCC
Confidence            678999999999999999999999996  568999999988663 22111110                       1122


Q ss_pred             cceeEEEechh--HHHHHHhhhcCCcc
Q psy17820         59 WKRRWFILNDK--CLYYFEYTTDKPFK   83 (210)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~i~~~~~~   83 (210)
                      .+.+++.+++.  +..|+.+|..+.-.
T Consensus        86 ~~~~~~~a~s~~e~~~Wv~~l~~ai~~  112 (117)
T d1v5ua_          86 RRVYNFCAQDVPSAQQWVDRIQSCLSS  112 (117)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            34456776654  99999999876543

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.2e-14  Score=98.70  Aligned_cols=75  Identities=9%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCcc---e--------------ecccceeEEEe
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSSG---R--------------YKSWKRRWFIL   66 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~~---~--------------~~~~~~~~~~~   66 (210)
                      .+..++|||.|+|+..++|++|||||++++|.||+++++..+ +.|....+   .              ..+...+++.+
T Consensus         9 ~~~~~eG~L~k~~~~~k~WkkrwfvL~~~~L~yY~~~~d~~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~~~~f~A   88 (136)
T d1x1fa1           9 LPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKT   88 (136)
T ss_dssp             SCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEEC
T ss_pred             CCccEEEEEEEECCCCCCeEEEEEEEcCCEeEEEeecccccccccccccceeeeeeecccccccceeeecCCCceEEEEe
Confidence            577899999999999999999999999999999999888653 22222111   1              11122344555


Q ss_pred             chh--HHHHHHhhhc
Q psy17820         67 NDK--CLYYFEYTTD   79 (210)
Q Consensus        67 ~~~--~~~~~~~i~~   79 (210)
                      ++.  ++.|..+|..
T Consensus        89 es~~e~~~Wi~~I~~  103 (136)
T d1x1fa1          89 ENTESGEEWRGFILT  103 (136)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            544  9999988855

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.4e-14  Score=95.68  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=52.0

Q ss_pred             CCeeeEEEeeCCC--CCCceeEEEEEeCCEEEEEeecCCccc-ccc--cCCccee-----------------------cc
Q psy17820          7 PDKEGWLWKQGGR--YKSWKRRWFILNDKCLYYFEYTTDKSA-CLI--ENSSGRY-----------------------KS   58 (210)
Q Consensus         7 ~~~~G~L~K~g~~--~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i--~~~~~~~-----------------------~~   58 (210)
                      ++++|||.|++++  .+.||+|||||+++.|+||+++++..+ +.|  ....+..                       ..
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~~~~   82 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD   82 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSCSCSBTT
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchhhcccccccccccceeEeeccccccccccEEeeeccccccccC
Confidence            5799999999764  577999999999999999999877653 222  1111110                       11


Q ss_pred             cceeEEEechh--HHHHHHhhhcCC
Q psy17820         59 WKRRWFILNDK--CLYYFEYTTDKP   81 (210)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~i~~~~   81 (210)
                      .+.+++.+++.  +..|+.++..+.
T Consensus        83 ~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          83 YRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             BSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             ceeEEEECCCHHHHHHHHHHHHHhc
Confidence            12345566544  999999998764

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=96.73  Aligned_cols=43  Identities=37%  Similarity=0.731  Sum_probs=39.1

Q ss_pred             CCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          4 FFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      -+.++++|||+|+++..++|++|||||+++.|+||+++++..+
T Consensus         5 ~s~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~~~~~   47 (118)
T d1v89a_           5 SSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP   47 (118)
T ss_dssp             SSCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSC
T ss_pred             CCCCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccCcccc
Confidence            4678999999999999999999999999999999998887653

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.3e-14  Score=93.86  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=57.0

Q ss_pred             CCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCc--c---ee-----------ccc-ceeEE
Q psy17820          3 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSS--G---RY-----------KSW-KRRWF   64 (210)
Q Consensus         3 ~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~--~---~~-----------~~~-~~~~~   64 (210)
                      .-+++.++|||+|+++..+.|++|||||+++.|+||+++++..+ ..|....  +   .+           ... ..+++
T Consensus         4 ~~~~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~f   83 (109)
T d1wgqa_           4 GSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVF   83 (109)
T ss_dssp             CCCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEE
T ss_pred             CCCCCcEEEEEEEECCCCCCceEEEEEEeCCEEEEeccccccccccccccceeeeeecccccccceeeeeecccceEEEE
Confidence            45789999999999999999999999999999999998876543 2221111  1   00           011 11233


Q ss_pred             Eechh--HHHHHHhhhcCCcccc
Q psy17820         65 ILNDK--CLYYFEYTTDKPFKIP   85 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~~~~~~~   85 (210)
                      .+++.  +..|+.+|..+....|
T Consensus        84 ~a~s~~~~~~Wi~ai~~a~~~~p  106 (109)
T d1wgqa_          84 KADDAHSTQRWIDAFQEGTVSGP  106 (109)
T ss_dssp             ECSSHHHHHHHHHHHHHHHSCCC
T ss_pred             ECCCHHHHHHHHHHHHHHhccCC
Confidence            44333  8999999987765544

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.4e-14  Score=93.18  Aligned_cols=73  Identities=15%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCcce------------ecccceeEEEechh--HH
Q psy17820          8 DKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSSGR------------YKSWKRRWFILNDK--CL   71 (210)
Q Consensus         8 ~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~~--~~   71 (210)
                      +++|||.|+++ +.+.|++|||||+++.|.||+++++..+ +.|....+.            ..+.+.+++.+++.  +.
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~f~i~~~~~~~~l~a~s~~e~~   81 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVEKEEERN   81 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEETTTEEEEEESSCCEEEECSSHHHHH
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccCcceeEEEEEchhceeeccccceeEEEEcCCcEEEEEeCCHHHHH
Confidence            68999999986 5689999999999999999999887664 233332221            12234455666554  88


Q ss_pred             HHHHhhhcC
Q psy17820         72 YYFEYTTDK   80 (210)
Q Consensus        72 ~~~~~i~~~   80 (210)
                      .|+.+|..+
T Consensus        82 ~Wi~ai~~~   90 (102)
T d2coda1          82 DWISILLNA   90 (102)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888654

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.2e-14  Score=93.62  Aligned_cols=42  Identities=26%  Similarity=0.645  Sum_probs=38.1

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ..++++|||.|+|+..++|++|||||.++.|.||+++++..+
T Consensus         3 ~~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~~~~p   44 (113)
T d1plsa_           3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP   44 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSC
T ss_pred             CCceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCCcccc
Confidence            458999999999999999999999999999999998887654

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=4.7e-14  Score=93.28  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-cc--ccCCcceec------------------ccceeEEE
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CL--IENSSGRYK------------------SWKRRWFI   65 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~--i~~~~~~~~------------------~~~~~~~~   65 (210)
                      .+|+|||+|++...++|++|||||+++.|.||+++++..+ +.  |..+.+...                  ....+++.
T Consensus         1 ~iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~   80 (101)
T d2fjla1           1 SIKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVA   80 (101)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEE
T ss_pred             CceEEEEEEEcCCCCCCeEEEEEEECCEEEEEeccccceecceEEcCCceeEeeeeecccccceeEEeccccccEEEEEE
Confidence            3689999999999999999999999999999998877654 22  233332110                  11224555


Q ss_pred             echh--HHHHHHhhhcC
Q psy17820         66 LNDK--CLYYFEYTTDK   80 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~   80 (210)
                      +++.  +..|+.+|+.+
T Consensus        81 a~s~~e~~~Wi~ai~~~   97 (101)
T d2fjla1          81 ADSQEELQDWVKKIREV   97 (101)
T ss_dssp             ESSHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHH
Confidence            5444  89999998754

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.2e-13  Score=94.85  Aligned_cols=81  Identities=19%  Similarity=0.241  Sum_probs=55.6

Q ss_pred             CCCeeeEEEeeCC-CCCCceeEEEEEe--CCEEEEEeecCCcccc-c-----ccCCcc-------------------eec
Q psy17820          6 NPDKEGWLWKQGG-RYKSWKRRWFILN--DKCLYYFEYTTDKSAC-L-----IENSSG-------------------RYK   57 (210)
Q Consensus         6 ~~~~~G~L~K~g~-~~~~wkrRwfvL~--~~~L~Yy~~~~~~~~~-~-----i~~~~~-------------------~~~   57 (210)
                      ...++|||.|++. ..+.|+||||||.  ++.|.||+++++..+. .     |....+                   ...
T Consensus        14 ~~~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (126)
T d1v5pa_          14 QNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINA   93 (126)
T ss_dssp             CCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEEC
T ss_pred             CCceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEcC
Confidence            3468899999985 6789999999994  7899999988765431 1     111111                   112


Q ss_pred             ccceeEEEechh--HHHHHHhhhcCCccccC
Q psy17820         58 SWKRRWFILNDK--CLYYFEYTTDKPFKIPE   86 (210)
Q Consensus        58 ~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~   86 (210)
                      ..+.+++.++++  +..|+++|..+.-..|.
T Consensus        94 ~~r~~~l~Aes~~e~~~Wi~aL~~A~~~~P~  124 (126)
T d1v5pa_          94 LSQRYFLQANDQKDLKDWVEALNQASKSGPS  124 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTTTSSS
T ss_pred             CCeeEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence            234456776654  99999999987655553

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=8.6e-14  Score=94.79  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=49.1

Q ss_pred             CCCCeeeEEEeeCCC-CCCceeEEEEEeCCEEEEEeecCCccccc-cc-CCcc-------------eecccceeEEEech
Q psy17820          5 FNPDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTDKSACL-IE-NSSG-------------RYKSWKRRWFILND   68 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~-~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~-i~-~~~~-------------~~~~~~~~~~~~~~   68 (210)
                      .+++++|||.|+|+. .+.|++|||||+++.|+||+++.+..+.+ +. ...+             .......+++.+++
T Consensus         8 ~~~i~eG~L~K~g~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~i~l~~~~~v~~~~~~~~~~f~i~~~~~~~~~f~a~s   87 (119)
T d1omwa2           8 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVEETQIKERKCLLLKIRGGKQFVLQCDS   87 (119)
T ss_dssp             SCCCEEEEEEECC------CEEEEEEEETTEEEEECTTSCCCEEEEGGGEEEEEEEESSSCEEEEEEETTSCEEEEECSS
T ss_pred             CCeEEEEEEEEECCCCCCCeEEEEEEEEcCeEEEEecccccCccceeccccccccccccccceEEEEcCCCcEEEEECCC
Confidence            578899999999974 56799999999999999999887765422 11 1111             11112334555554


Q ss_pred             h--HHHHHHhhhcC
Q psy17820         69 K--CLYYFEYTTDK   80 (210)
Q Consensus        69 ~--~~~~~~~i~~~   80 (210)
                      .  +..|+.+|..+
T Consensus        88 ~~e~~~W~~al~~a  101 (119)
T d1omwa2          88 DPELVQWKKELRDA  101 (119)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            4  88999888654

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=90.97  Aligned_cols=76  Identities=22%  Similarity=0.490  Sum_probs=52.6

Q ss_pred             CCCCeeeEEEeeCC-CCCCceeEEEEEeCCEEEEEeecCCcccc-cc--cCCcce-----------------ecccceeE
Q psy17820          5 FNPDKEGWLWKQGG-RYKSWKRRWFILNDKCLYYFEYTTDKSAC-LI--ENSSGR-----------------YKSWKRRW   63 (210)
Q Consensus         5 ~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~-~i--~~~~~~-----------------~~~~~~~~   63 (210)
                      .++.++|||.|+++ ..+.|++|||||+++.|+||+++++..+. .|  ....+.                 ......++
T Consensus         7 ~~~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~   86 (107)
T d1upqa_           7 LPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYV   86 (107)
T ss_dssp             SCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEE
T ss_pred             CceeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCcccccccceecccceEEEEeccCcccCcceEEEEEcCCCeEEE
Confidence            35679999999976 57889999999999999999988776542 21  111111                 11122345


Q ss_pred             EEechh--HHHHHHhhhcC
Q psy17820         64 FILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~   80 (210)
                      +.+++.  +..|+.+|..+
T Consensus        87 ~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          87 LAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             EECSSHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHH
Confidence            555554  88999998754

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.1e-13  Score=90.63  Aligned_cols=46  Identities=26%  Similarity=0.494  Sum_probs=39.7

Q ss_pred             CCCCCCCCeeeEEEeeCCC----CCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          1 MHTFFNPDKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         1 ~~~~~~~~~~G~L~K~g~~----~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      +|+.+.+.++|||.|++..    .++|++|||||+++.|+||+++++..+
T Consensus         3 ~~~~~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~p   52 (111)
T d1u5fa1           3 AQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ   52 (111)
T ss_dssp             GGGCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSC
T ss_pred             CCCCCCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeeccccccCc
Confidence            3677889999999999763    468999999999999999998877654

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=89.33  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             CCCCeeeEEEeeCC---CCCCceeEEEEEeCCEEEEEeecCCcccccc--cCCccee---------------cccceeEE
Q psy17820          5 FNPDKEGWLWKQGG---RYKSWKRRWFILNDKCLYYFEYTTDKSACLI--ENSSGRY---------------KSWKRRWF   64 (210)
Q Consensus         5 ~~~~~~G~L~K~g~---~~~~wkrRwfvL~~~~L~Yy~~~~~~~~~~i--~~~~~~~---------------~~~~~~~~   64 (210)
                      +-+.++|||.|++.   ..+.|+||||||+++.|+||++.++...+.|  ..+.+..               ...+.+++
T Consensus         3 ~~~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~f~i~~~~~~~~~~l   82 (101)
T d2elba2           3 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMDIDNCSVMAVDCEDRRYCFQITSFDGKKSSIL   82 (101)
T ss_dssp             CCSCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTTCCCE----EEEECCCCCCCCCCSSSSSEECCCSSSCCCCE
T ss_pred             CCccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccCCcccceEEEecccccccccccCCcceEEEEeecccceEEE
Confidence            34679999999853   4678999999999999999987665443322  2222211               11123455


Q ss_pred             Eechh--HHHHHHhhhc
Q psy17820         65 ILNDK--CLYYFEYTTD   79 (210)
Q Consensus        65 ~~~~~--~~~~~~~i~~   79 (210)
                      .+++.  +..|+.+|..
T Consensus        83 ~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          83 QAESKKDHEEWICTINN   99 (101)
T ss_dssp             ECSSHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHh
Confidence            66554  8899998864

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.1e-13  Score=96.08  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCCeeeEEEeeCCCCC-----CceeEEEEEeCCEEEEEeecCCc
Q psy17820          6 NPDKEGWLWKQGGRYK-----SWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~~-----~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      .++++|||.|++...+     +||||||||+++.|+||+++.+.
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~   45 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFER   45 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTT
T ss_pred             cEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeecccccc
Confidence            4789999999997543     79999999999999999987654

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-13  Score=91.33  Aligned_cols=41  Identities=29%  Similarity=0.643  Sum_probs=35.0

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeC-CEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILND-KCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~-~~L~Yy~~~~~~~   45 (210)
                      .+++++|||.|+|+..++|++|||||++ +.|.||+++.+..
T Consensus         5 ~~v~k~G~L~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~   46 (118)
T d1unqa_           5 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV   46 (118)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSH
T ss_pred             CCEEEEEEEEEECCCCCCcEEEEEEEeccceeEEEeeccCcc
Confidence            3688999999999999999999999975 6888888776654

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=86.59  Aligned_cols=39  Identities=41%  Similarity=0.622  Sum_probs=31.1

Q ss_pred             CCeeeEEEeeCCCCCCceeEEEEEeCCE--EEEEeecCCcc
Q psy17820          7 PDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYFEYTTDKS   45 (210)
Q Consensus         7 ~~~~G~L~K~g~~~~~wkrRwfvL~~~~--L~Yy~~~~~~~   45 (210)
                      ++|+|||+|+++..++|++|||||+++.  |+||+++++..
T Consensus         2 v~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~~~~   42 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED   42 (104)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSS
T ss_pred             EEEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCccccC
Confidence            4789999999999999999999998764  45555555544

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=92.37  Aligned_cols=73  Identities=15%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCccc-ccccCCcc-----e-------ecccceeEEEechh-H
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-CLIENSSG-----R-------YKSWKRRWFILNDK-C   70 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-~~i~~~~~-----~-------~~~~~~~~~~~~~~-~   70 (210)
                      ..++|+|||.|+|+  ..|+||||||+++.|.||+++.+..+ +.|.....     .       ..+.+.+++.+.++ +
T Consensus        46 ~~ilK~G~L~Kr~~--~~wkkR~FvL~~~~L~YYkd~~~~~~kG~I~L~~~~~v~~~~~~~F~I~t~~Rty~l~a~~~d~  123 (147)
T d1w1ha_          46 NLILKMGPVDKRKG--LFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNA  123 (147)
T ss_dssp             CCEEEEEEEEECCT--TSCEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEEEETTEEEEECSSCEEEEECTTSCH
T ss_pred             CeEEEEEEEEeecC--CcceEEEEEEcCCeeEEEeCCCcccccceEEeccccccccccCceEEEecCceEEEEEcChHHH
Confidence            45679999999985  46999999999999999999877653 33332221     1       12233344444333 8


Q ss_pred             HHHHHhhhc
Q psy17820         71 LYYFEYTTD   79 (210)
Q Consensus        71 ~~~~~~i~~   79 (210)
                      ..|+.+|..
T Consensus       124 ~~Wv~aI~~  132 (147)
T d1w1ha_         124 HKWCRKIQE  132 (147)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            889988864

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=89.97  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=48.2

Q ss_pred             CCCCCeeeEEEeeCC-CCCCceeEEEEEeCCE--EEEEeecCCccc---ccccC--Ccc-----------------eecc
Q psy17820          4 FFNPDKEGWLWKQGG-RYKSWKRRWFILNDKC--LYYFEYTTDKSA---CLIEN--SSG-----------------RYKS   58 (210)
Q Consensus         4 ~~~~~~~G~L~K~g~-~~~~wkrRwfvL~~~~--L~Yy~~~~~~~~---~~i~~--~~~-----------------~~~~   58 (210)
                      .+.+.++|||+|+|. ..+.|+||||||+++.  ++||++..+...   +.|..  ..+                 ....
T Consensus         5 ~~~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~   84 (126)
T d1wi1a_           5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE   84 (126)
T ss_dssp             CCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS
T ss_pred             CCCCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEcccccccccceeeeeeceeeeeeccccccccccceeEEeccC
Confidence            356789999999987 4689999999998653  455555444321   22211  111                 1122


Q ss_pred             cceeEEEechh--HHHHHHhhhcC
Q psy17820         59 WKRRWFILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~i~~~   80 (210)
                      .+.+++.+++.  +..|+++|..+
T Consensus        85 ~r~~~f~A~s~~e~~~Wv~al~~a  108 (126)
T d1wi1a_          85 GDTVIFASDDEQDRILWVQAMYRA  108 (126)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCHHHHHHHHHHHHHH
Confidence            23445666554  88999988654

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.4e-12  Score=86.55  Aligned_cols=40  Identities=25%  Similarity=0.622  Sum_probs=34.4

Q ss_pred             CCeeeEEEeeCCC----CCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          7 PDKEGWLWKQGGR----YKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         7 ~~~~G~L~K~g~~----~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ++|+|||.|++.+    .++|++|||||+++.|.||+++.+..+
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~~   44 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP   44 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSC
T ss_pred             CeEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEeccccccc
Confidence            4799999998763    467999999999999999998877664

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2e-12  Score=84.67  Aligned_cols=72  Identities=11%  Similarity=0.034  Sum_probs=49.2

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCC---EEEEEeecCCccc-cccc--CCcce----------------ecccceeEEE
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDK---CLYYFEYTTDKSA-CLIE--NSSGR----------------YKSWKRRWFI   65 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~---~L~Yy~~~~~~~~-~~i~--~~~~~----------------~~~~~~~~~~   65 (210)
                      +++|||.|+.+ .++|+||||||+++   .|+||+++++..+ +.|.  .+.+.                ....+.+++.
T Consensus         2 ~~~G~L~~~~~-~k~W~krwfvL~~~~~~~ly~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~r~~~l~   80 (99)
T d2coca1           2 LLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLS   80 (99)
T ss_dssp             SSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEEEE
T ss_pred             ceEEEEEccCC-CCCccEEEEEEecCCccEEEEECcCccccccccccccceeeeecccccccCCceEEEEEcCCcEEEEE
Confidence            57899999986 57999999999876   5999998877654 2222  11110                1122344556


Q ss_pred             echh--HHHHHHhhhcC
Q psy17820         66 LNDK--CLYYFEYTTDK   80 (210)
Q Consensus        66 ~~~~--~~~~~~~i~~~   80 (210)
                      +++.  +..|+++|..+
T Consensus        81 A~s~~e~~~Wi~aL~~A   97 (99)
T d2coca1          81 ASSAELQQQWLETLSTA   97 (99)
T ss_dssp             ESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            6554  99999998764

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.7e-12  Score=88.13  Aligned_cols=74  Identities=22%  Similarity=0.426  Sum_probs=45.5

Q ss_pred             CCeeeEEEe----------eCCCCCCceeEEEEEeCCEEEEEeecCCccc-----cc--ccCCcce--------------
Q psy17820          7 PDKEGWLWK----------QGGRYKSWKRRWFILNDKCLYYFEYTTDKSA-----CL--IENSSGR--------------   55 (210)
Q Consensus         7 ~~~~G~L~K----------~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~~-----~~--i~~~~~~--------------   55 (210)
                      +.|+|||.+          .++..++|++|||||+++.|+||+++.+...     +.  |..+.+.              
T Consensus         1 ~~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i   80 (133)
T d2j59m1           1 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRL   80 (133)
T ss_dssp             CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEE
T ss_pred             CCceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEEEEcccccccCceeEE
Confidence            469999983          4446789999999999999999998766421     22  2233321              


Q ss_pred             ecccceeEEEechh--HHHHHHhhhcC
Q psy17820         56 YKSWKRRWFILNDK--CLYYFEYTTDK   80 (210)
Q Consensus        56 ~~~~~~~~~~~~~~--~~~~~~~i~~~   80 (210)
                      ..+...+++.+++.  +..|+.+|..+
T Consensus        81 ~~~~~~~~f~A~s~~e~~~Wi~ai~~a  107 (133)
T d2j59m1          81 TTSDCECLFQAEDRDDMLAWIKTIQES  107 (133)
T ss_dssp             ECSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            11223345566554  89999999765

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=7.8e-12  Score=86.48  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             cccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC---CceeEEEeCCeEEEEecC-CCCcceEEEEeCCcee
Q psy17820         95 TFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK---EPRGIIPLENIQVREVHD-RHKPHCFELFTSGFEF  170 (210)
Q Consensus        95 ~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~---~~~~~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~  170 (210)
                      ....+++.|++.++....+.|+.|||+|-++.|.|++.....   ...+.|+|.++.|...++ ...+++|.|..+..  
T Consensus        24 ~~G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~--  101 (132)
T d1v61a_          24 TLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTV--  101 (132)
T ss_dssp             TTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSS--
T ss_pred             hccCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhccccccccccCccceEEEeCCCC--
Confidence            336688999999988777899999999999999999864332   246779999988876544 35678999886642  


Q ss_pred             eeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        171 IKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       171 ~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                       +.|.|.|.|++|+++||.+|++
T Consensus       102 -----------------~~~~l~a~s~eek~~Wv~~L~~  123 (132)
T d1v61a_         102 -----------------ERIVVHCNNNQDFQEWMEQLNR  123 (132)
T ss_dssp             -----------------CEEEECCCCSHHHHHHHHHHHH
T ss_pred             -----------------CEEEEEcCCHHHHHHHHHHHHH
Confidence                             5899999999999999999985

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.7e-12  Score=82.01  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=47.5

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCcc-c-cc--ccCCccee--------------cccceeEEEechh
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDKS-A-CL--IENSSGRY--------------KSWKRRWFILNDK   69 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~~-~-~~--i~~~~~~~--------------~~~~~~~~~~~~~   69 (210)
                      .++|||.|.+  ++.|++|||||+++.|+||+++.+.. + ++  +..+.+..              .....+++.+++.
T Consensus         2 ~~s~yl~~~~--~~~WkkR~fvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~f~~~~~~~~~~~l~A~s~   79 (95)
T d2cofa1           2 ETSSYLNVLV--NSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLEAKSS   79 (95)
T ss_dssp             TTCCEEEEEE--TTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCBTTBSCEEEEEETTEEEEEEECSSH
T ss_pred             Ccccchhhhc--CCCceEEEEEEECCEEEEEecccccccccccccccceEEEecccccceecceeccccceeEEeeCCCH
Confidence            5799999998  47899999999999999999875443 2 22  23333321              1112233445443


Q ss_pred             --HHHHHHhhhcC
Q psy17820         70 --CLYYFEYTTDK   80 (210)
Q Consensus        70 --~~~~~~~i~~~   80 (210)
                        +..|+.+|..+
T Consensus        80 ~e~~~Wi~~L~~~   92 (95)
T d2cofa1          80 EEMGHWLGLLLSE   92 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence              99999988764

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=8e-12  Score=92.95  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=36.3

Q ss_pred             CCCCeeeEEEeeCC----CCCCceeEEEEEeCCEEEEEeecCCccc
Q psy17820          5 FNPDKEGWLWKQGG----RYKSWKRRWFILNDKCLYYFEYTTDKSA   46 (210)
Q Consensus         5 ~~~~~~G~L~K~g~----~~~~wkrRwfvL~~~~L~Yy~~~~~~~~   46 (210)
                      ..+.++|||.|+|.    ..++|+||||||+++.|+||+++.+..+
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~~  147 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ  147 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSC
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCCCCcc
Confidence            45679999999986    3679999999999999999999888764

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.20  E-value=1.1e-11  Score=84.30  Aligned_cols=40  Identities=18%  Similarity=0.385  Sum_probs=33.4

Q ss_pred             CCCCeeeEEEeeCC--------CCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          5 FNPDKEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         5 ~~~~~~G~L~K~g~--------~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      +.+.++|||.++..        ..++|++|||||+++.|+||+++++.
T Consensus         6 ~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~   53 (123)
T d1wjma_           6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAA   53 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHH
T ss_pred             CCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhc
Confidence            46789999998743        46789999999999999999977553

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.3e-11  Score=84.91  Aligned_cols=39  Identities=31%  Similarity=0.509  Sum_probs=31.5

Q ss_pred             CCCCeeeEEEeeCCC------CCCceeEEEEEeCC-----EEEEEeecCC
Q psy17820          5 FNPDKEGWLWKQGGR------YKSWKRRWFILNDK-----CLYYFEYTTD   43 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~------~~~wkrRwfvL~~~-----~L~Yy~~~~~   43 (210)
                      ..+.++|||+|++..      .++|++|||||+++     .|.||+++..
T Consensus        16 ~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~   65 (150)
T d1wg7a_          16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI   65 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC
T ss_pred             CCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEecccc
Confidence            568999999999863      36899999999854     6889886654

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.18  E-value=2.3e-11  Score=80.54  Aligned_cols=36  Identities=17%  Similarity=0.488  Sum_probs=30.2

Q ss_pred             eeeEEEeeCC--------CCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          9 KEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         9 ~~G~L~K~g~--------~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      +||||+|++.        ..++|++|||||+++.|+||+++.+.
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~   44 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSA   44 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHH
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhc
Confidence            5899999841        35679999999999999999987653

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-11  Score=82.32  Aligned_cols=35  Identities=40%  Similarity=0.675  Sum_probs=29.1

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCE--EEEEe
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKC--LYYFE   39 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~--L~Yy~   39 (210)
                      .+++++|||.|+|...+.|+||||+|+++.  |+||.
T Consensus         9 ~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~   45 (116)
T d1x1ga1           9 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYD   45 (116)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEEC
T ss_pred             CCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEec
Confidence            567899999999999999999999997654  44444

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.3e-12  Score=82.10  Aligned_cols=34  Identities=35%  Similarity=0.607  Sum_probs=28.8

Q ss_pred             CCCeeeEEEeeCCCCCCceeEEEEEeCC-------EEEEEeecCC
Q psy17820          6 NPDKEGWLWKQGGRYKSWKRRWFILNDK-------CLYYFEYTTD   43 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~~~wkrRwfvL~~~-------~L~Yy~~~~~   43 (210)
                      ++.++|||.|+    ++|+||||||+++       .|+||+++++
T Consensus         1 dv~k~GyL~K~----k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~   41 (103)
T d1qqga1           1 DVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKK   41 (103)
T ss_dssp             CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHH
T ss_pred             CcceeEEEEEc----CCCCEEEEEEecccccCCccEEEEEcchhh
Confidence            47899999998    5899999999865       5999997654

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=3.9e-11  Score=83.25  Aligned_cols=45  Identities=18%  Similarity=0.291  Sum_probs=36.0

Q ss_pred             CCCCCCCeeeEEEee--------CCCCCCceeEEEEEeCC------EEEEEeecCCccc
Q psy17820          2 HTFFNPDKEGWLWKQ--------GGRYKSWKRRWFILNDK------CLYYFEYTTDKSA   46 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~--------g~~~~~wkrRwfvL~~~------~L~Yy~~~~~~~~   46 (210)
                      .+..++.|+|||.++        +++.+.|+||||||+++      .|.||+++++..+
T Consensus        13 ~~~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~   71 (136)
T d1v5ma_          13 VELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP   71 (136)
T ss_dssp             CCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC
T ss_pred             cccceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCcccccCc
Confidence            356789999999753        33578999999999876      5999998887654

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=3e-11  Score=82.04  Aligned_cols=41  Identities=10%  Similarity=0.328  Sum_probs=33.9

Q ss_pred             CCCCeeeEEEeeCC--------CCCCceeEEEEEeCCEEEEEeecCCcc
Q psy17820          5 FNPDKEGWLWKQGG--------RYKSWKRRWFILNDKCLYYFEYTTDKS   45 (210)
Q Consensus         5 ~~~~~~G~L~K~g~--------~~~~wkrRwfvL~~~~L~Yy~~~~~~~   45 (210)
                      .+..++|||+|+..        ..++|+||||||+++.|+||+++.+..
T Consensus         6 ~~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~   54 (122)
T d1droa_           6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYK   54 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHH
T ss_pred             CCcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCccccc
Confidence            46789999998853        245799999999999999999876643

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=7.7e-10  Score=78.83  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             CccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC----CCceeEEEeCCeEEEEecCCC-------Ccc
Q psy17820         91 DLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD----KEPRGIIPLENIQVREVHDRH-------KPH  159 (210)
Q Consensus        91 ~~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~----~~~~~~i~L~~~~v~~~~~~~-------~~~  159 (210)
                      ++.......+++|+|.+.+...+.|+.|||+|-++.|.|++....    -...+.++|..+.+...++..       -++
T Consensus        19 ~L~~~~r~Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~   98 (162)
T d2dfka2          19 DILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKN   98 (162)
T ss_dssp             CGGGTCCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESS
T ss_pred             cccccCceEEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccCccccc
Confidence            444445667899999998876778999999999999998875432    235678899998887654421       246


Q ss_pred             eEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        160 CFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       160 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +|.|..+.+                  .+.|.|+|+|++|+..||++|+.
T Consensus        99 ~f~i~~~~~------------------~~~~~~~A~s~~eK~~W~~~l~~  130 (162)
T d2dfka2          99 AFKLHNKET------------------EEVHLFFAKKLEEKIRWLRAFRE  130 (162)
T ss_dssp             EEEEEESSS------------------SCEEEEECSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCC------------------CeEEEEEeCCHHHHHHHHHHHHH
Confidence            888876643                  35899999999999999999973

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.1e-08  Score=68.81  Aligned_cols=96  Identities=22%  Similarity=0.302  Sum_probs=72.5

Q ss_pred             CccccccCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC-----------CceeEEEeCCeEEEEecCC-CCc
Q psy17820         91 DLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK-----------EPRGIIPLENIQVREVHDR-HKP  158 (210)
Q Consensus        91 ~~~~~~~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~-----------~~~~~i~L~~~~v~~~~~~-~~~  158 (210)
                      ++.......+++|.|.+.+..    +.|++.|=++.|.|.+.....           ...+.|+|.++.|..+.+. ..+
T Consensus        19 ~l~~~gr~li~eG~l~~~~~~----k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~   94 (133)
T d1dbha2          19 DIGQCCNEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK   94 (133)
T ss_dssp             CGGGTCCCEEEEEEEEETTCS----SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCC
T ss_pred             CccccCcEEEEEeEEEEecCC----CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCCCcccc
Confidence            344444556789999987643    579999999999998754321           1356799999999876554 567


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++|.|..+..                   +.+.|+|+|++|+..|+++|..
T Consensus        95 ~~f~i~~~~~-------------------~~~~l~a~s~~eK~~W~~~l~~  126 (133)
T d1dbha2          95 HAFEIILKDE-------------------NSVIFSAKSAEEKNNWMAALIS  126 (133)
T ss_dssp             SEEEECCTTS-------------------CCEEEECSSHHHHHHHHHHHHH
T ss_pred             cceeEEcCCC-------------------cEEEEEECCHHHHHHHHHHHHH
Confidence            8999876542                   5799999999999999999964

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=6.4e-08  Score=63.90  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=69.1

Q ss_pred             cceeeEEeecCc-cCCeeEEEEEEeCCEEEEeccCCC----CCceeEEEeCCeEEEEecCC-CCcceEEEEeCCceeeee
Q psy17820        100 DKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTTD----KEPRGIIPLENIQVREVHDR-HKPHCFELFTSGFEFIKA  173 (210)
Q Consensus       100 ~~~G~L~k~~~~-~~~wk~r~fvL~~~~L~yy~~~~~----~~~~~~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~  173 (210)
                      +++|.|.+.... .+.-++|++.|=++.|.+.+....    -.....++|..+.|..+++. ..+++|.|..+.      
T Consensus         5 i~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~~~~n~f~i~~~~------   78 (109)
T d1zc3b1           5 VYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFP------   78 (109)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEETT------
T ss_pred             EEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeecccccceEEEEccCC------
Confidence            578999887543 344578899998888887764322    23467789999988877554 567899998764      


Q ss_pred             eecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        174 CKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       174 ~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                    +++.|+|+|++|+..|+++|+.
T Consensus        79 --------------~~~~~~a~s~~eK~~W~~~l~~  100 (109)
T d1zc3b1          79 --------------ESRIFQAENAKIKREWLEVLEE  100 (109)
T ss_dssp             --------------EEEEEECSSHHHHHHHHHHHHH
T ss_pred             --------------CEEEEEECCHHHHHHHHHHHHH
Confidence                          5899999999999999999975

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=3.5e-08  Score=66.32  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=59.4

Q ss_pred             cceee-EEeecCccCCeeEEEEEEeC-CEEEEeccCCC--CCceeEEEeCCeEEE-EecCC----------CCcceEEEE
Q psy17820        100 DKEGW-LWKQGGRYKSWKRRWFILND-KCLYYFEYTTD--KEPRGIIPLENIQVR-EVHDR----------HKPHCFELF  164 (210)
Q Consensus       100 ~~~G~-L~k~~~~~~~wk~r~fvL~~-~~L~yy~~~~~--~~~~~~i~L~~~~v~-~~~~~----------~~~~~f~i~  164 (210)
                      .++|. |.|... .+..++|||.|.. ..+.+|.+..+  ..+.+.|+|..+.-+ .....          ....||.|+
T Consensus        11 l~~G~~l~K~~~-~~~~k~R~f~L~~d~~~i~~~~~~~~~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv   89 (119)
T d1maia_          11 LLKGSQLLKVKS-SSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIV   89 (119)
T ss_dssp             HHHCEEEEEESS-SSCEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEE
T ss_pred             HHcCCeEEEeCC-CCCCEEEEEEEcCCCCEEEEeCCCCCCCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEE
Confidence            35674 666543 2234679999964 34556654432  345788999886433 32111          224678887


Q ss_pred             eCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        165 TSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ..+.                  .+++.|.|+|+++++.|+.+|+.
T Consensus        90 ~~~~------------------~r~l~l~a~s~~~~~~Wv~~L~~  116 (119)
T d1maia_          90 FKDQ------------------RNTLDLIAPSPADAQHWVQGLRK  116 (119)
T ss_dssp             ESSS------------------CCCEEEECSSHHHHHHHHHHHHH
T ss_pred             EcCC------------------CcEEEEEECCHHHHHHHHHHHHH
Confidence            5432                  47999999999999999999985

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.19  E-value=1.9e-05  Score=52.09  Aligned_cols=91  Identities=22%  Similarity=0.258  Sum_probs=60.5

Q ss_pred             cceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC------------------CceeEEEeCCeEEEEecCCCCcceE
Q psy17820        100 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------------------EPRGIIPLENIQVREVHDRHKPHCF  161 (210)
Q Consensus       100 ~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~------------------~~~~~i~L~~~~v~~~~~~~~~~~f  161 (210)
                      +++|-|..+.+. +.-+.|++.|=++.|.+.+...+.                  .....|+|....+..... +.+..|
T Consensus         2 i~eG~L~~~~~~-~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~-d~~~~f   79 (114)
T d1txda2           2 IHEGPLVWKVNR-DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT-DNKALF   79 (114)
T ss_dssp             EEEEEEEEESSS-SCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC--CCEEE
T ss_pred             ceeeeEEEEecC-CCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCC-CCCCEE
Confidence            468999755432 223688888888888776643321                  123357777777666432 345567


Q ss_pred             EEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        162 ELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      .|...+.                 +...|.|+|.|+++++.|+++|++
T Consensus        80 li~~~~~-----------------~~~~y~l~A~s~~eK~~W~~~I~~  110 (114)
T d1txda2          80 VISMSDN-----------------GAQIYELVAQTVSEKTVWQDLICR  110 (114)
T ss_dssp             EEEECSS-----------------CEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEecCC-----------------CceEEEEEcCCHHHHHHHHHHHHH
Confidence            7765532                 124799999999999999999985

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.2e-05  Score=53.54  Aligned_cols=97  Identities=15%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             cCCcceeeEEeecC--ccCCeeEEEEEEeCCEEEEeccCCC--C----CceeEEEeCCeEEEEecCCCCcceEEEEeCCc
Q psy17820         97 FNPDKEGWLWKQGG--RYKSWKRRWFILNDKCLYYFEYTTD--K----EPRGIIPLENIQVREVHDRHKPHCFELFTSGF  168 (210)
Q Consensus        97 ~~~~~~G~L~k~~~--~~~~wk~r~fvL~~~~L~yy~~~~~--~----~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~  168 (210)
                      ...++.|.|....+  ..+..+.|++.|=++.|.+-+....  .    .....+++..+.+....+ +.++.|.|.....
T Consensus        11 G~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~i~~~~~   89 (121)
T d1ntya2          11 GELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE-GDPCKFALWVGRT   89 (121)
T ss_dssp             CCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT-TCTTEEEEEESSS
T ss_pred             CcEEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcCC-CCCceEEEEEecC
Confidence            44677888875443  2346789999999999998763221  1    134446666766654433 3567888865321


Q ss_pred             eeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        169 EFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     .++...|.|+|.|++++..|+.+|++
T Consensus        90 ---------------~~~~~~~~l~a~s~~eK~~W~~~I~~  115 (121)
T d1ntya2          90 ---------------PTSDNKIVLKASSIENKQDWIKHIRE  115 (121)
T ss_dssp             ---------------CCTTTCEEEECSSHHHHHHHHHHHHH
T ss_pred             ---------------CCCceEEEEECCCHHHHHHHHHHHHH
Confidence                           11235799999999999999999975

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.9e-05  Score=53.90  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC------------------CceeEEEeCCeEEEEecCCCCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK------------------EPRGIIPLENIQVREVHDRHKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~------------------~~~~~i~L~~~~v~~~~~~~~~  158 (210)
                      ..-+++|-|..+.. .+..+.|++.|=++.|.+-+.....                  .....+.+....+...  ...+
T Consensus        23 R~Li~eG~L~~k~~-~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~   99 (140)
T d1xcga2          23 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--ATDK   99 (140)
T ss_dssp             SCEEEEEEEEECCS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC--SSCS
T ss_pred             ceEEEEeeEEEEec-CCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEEEecC--CCCC
Confidence            45578999975443 2456799999999999887654321                  0112334444333333  2345


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ++|.++....               .+....+.|+|+|++|+..|+++|+.
T Consensus       100 ~~f~li~~~~---------------~~~~~~~~l~A~s~~eK~~Wi~~i~~  135 (140)
T d1xcga2         100 RAFFIICTSK---------------LGPPQIYELVALTSSDKNTWMELLEE  135 (140)
T ss_dssp             SEEEEEECCS---------------SSTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCC---------------CCCceEEEEEcCCHHHHHHHHHHHHH
Confidence            7788865421               11235899999999999999999985

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.4e-06  Score=57.38  Aligned_cols=89  Identities=19%  Similarity=0.230  Sum_probs=59.3

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCCC-----------------CceeEEEeCCeEEEEecCC-CCc
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK-----------------EPRGIIPLENIQVREVHDR-HKP  158 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~~-----------------~~~~~i~L~~~~v~~~~~~-~~~  158 (210)
                      ...+++|.|.|....    +.|++.|=++.|.|-+...+.                 .....|+|..+.+....+. ...
T Consensus        23 R~li~eG~L~k~~~~----k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~~~~~   98 (142)
T d1ki1b2          23 RKFLHSGKLYKAKNN----KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDPSGDE   98 (142)
T ss_dssp             CCEEEECCCBCSSSC----CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSSCCC-
T ss_pred             eEEEEeeEEEEecCC----CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccCCcccce
Confidence            445789999875432    579999999998887543210                 1123467777776665443 333


Q ss_pred             ceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        159 HCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       159 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.|.+..+                    .+.|.|+|+|++|+..|+++|+.
T Consensus        99 ~~~~~~~~--------------------~~~~~l~a~s~~ek~~W~~~I~~  129 (142)
T d1ki1b2          99 PIFHISHI--------------------DRVYTLRAESINERTAWVQKIKA  129 (142)
T ss_dssp             --CEEEET--------------------TEEEECBCSSHHHHHHHHHHHHH
T ss_pred             eEEEecCC--------------------CEEEEEEeCCHHHHHHHHHHHHH
Confidence            44554433                    46999999999999999999975

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.4e-05  Score=54.09  Aligned_cols=42  Identities=19%  Similarity=0.154  Sum_probs=36.8

Q ss_pred             CCCCCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          2 HTFFNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         2 ~~~~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      +.+..+.++|++.++....+.|+.|||+|-++.|.|++....
T Consensus        23 ~~~G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~   64 (132)
T d1v61a_          23 KTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPR   64 (132)
T ss_dssp             TTTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSS
T ss_pred             hhccCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcCC
Confidence            356778999999999998899999999999999999996544

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=3.7e-05  Score=50.95  Aligned_cols=97  Identities=10%  Similarity=0.068  Sum_probs=63.6

Q ss_pred             cCCcceeeEEeecCccCCeeEEEEEEeCCEEEEeccCCC-----CCceeEEEeCCeEEEEecCCCCcceEEEEeCCceee
Q psy17820         97 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD-----KEPRGIIPLENIQVREVHDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~~~~wk~r~fvL~~~~L~yy~~~~~-----~~~~~~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~  171 (210)
                      +..+..|++....+..+. +.|++.|-+..|.|.+....     -.-++.|+|.++.|....  +.+..|.|.....+. 
T Consensus         8 G~ll~~~~f~v~~~~~k~-k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~--gd~~~F~i~~~~~~~-   83 (119)
T d1fhoa_           8 GRIIRHDAFQVWEGDEPP-KLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHT--TDEDTIVLQPQEPGL-   83 (119)
T ss_dssp             CCSSEEEEEEECSTTCSC-EEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEEC--TTCCEEEEECCSTTC-
T ss_pred             CceEEEeEEEEEeCCCCc-eEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcC--CCCcEEEEEeCCCCC-
Confidence            566788888876654333 46677777777777664322     234788999999887654  334578886553210 


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                  .....++.++|.|+++++.|+.+|+.
T Consensus        84 ------------~~~~~~~~~~a~s~~~K~~Wv~~I~e  109 (119)
T d1fhoa_          84 ------------PSFRIKPKDFETSEYVRKAWLRDIAE  109 (119)
T ss_dssp             ------------CCBCCCCCSSSSCSHHHHHHHHHHHT
T ss_pred             ------------CcceEEEEEecCCHHHHHHHHHHHHH
Confidence                        00012456778999999999999975

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.00045  Score=47.28  Aligned_cols=94  Identities=15%  Similarity=0.216  Sum_probs=61.9

Q ss_pred             cCCcceeeEEeecCc-----------cCCeeEEEEEEeCCEEEEeccCCCC----------CceeEEEeCCeEEEEecCC
Q psy17820         97 FNPDKEGWLWKQGGR-----------YKSWKRRWFILNDKCLYYFEYTTDK----------EPRGIIPLENIQVREVHDR  155 (210)
Q Consensus        97 ~~~~~~G~L~k~~~~-----------~~~wk~r~fvL~~~~L~yy~~~~~~----------~~~~~i~L~~~~v~~~~~~  155 (210)
                      ...+++|.|....+.           .+.-+.|+|.|=+..|.+.+.....          ...+.+++..+.+....+ 
T Consensus        11 G~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~~~-   89 (147)
T d1kz7a2          11 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK-   89 (147)
T ss_dssp             CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT-
T ss_pred             CCEEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCceeEecCC-
Confidence            445677887642211           1234789999999999888743211          124556677776654333 


Q ss_pred             CCcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        156 HKPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       156 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      +.+..|.+.....                  ...|.|.|.|++++..|+.+|++
T Consensus        90 ~~~~~f~~~~~~~------------------~~~~~l~a~s~eeK~~W~~~I~~  125 (147)
T d1kz7a2          90 GDTKKFEIWYNAR------------------EEVYIIQAPTPEIKAAWVNAIRK  125 (147)
T ss_dssp             TBTTEEEEEETTT------------------TEEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCcceEEEEeCCC------------------CcEEEEEeCCHHHHHHHHHHHHH
Confidence            3456677665432                  36899999999999999999975

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.0018  Score=40.46  Aligned_cols=89  Identities=15%  Similarity=0.222  Sum_probs=67.7

Q ss_pred             CcceeeEEeecC-----ccCCeeEEEEEEeCCEEEEeccCCCCCceeEEEeCCeEEEEe--cCCCCcceEEEEeCCceee
Q psy17820         99 PDKEGWLWKQGG-----RYKSWKRRWFILNDKCLYYFEYTTDKEPRGIIPLENIQVREV--HDRHKPHCFELFTSGFEFI  171 (210)
Q Consensus        99 ~~~~G~L~k~~~-----~~~~wk~r~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~v~~~--~~~~~~~~f~i~~~~~~~~  171 (210)
                      ..++|.|....+     ....|.|....|....|..--.    .....|+|.-|.|...  .......+|+|.++++   
T Consensus         6 a~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~~----~d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG---   78 (105)
T d2adza1           6 APRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPL----SEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADG---   78 (105)
T ss_dssp             CCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESS----CSCEEEETTTCEEEEECCSSCCSSCEEEEEETTT---
T ss_pred             CCccceEEEeeccCCCccccceeeeeeecccceEEeecc----cccceeeeeeEEeeecccCCCCcccEEEEECCCC---
Confidence            358999988743     2447999999999999986432    2356899998877653  2223345899999986   


Q ss_pred             eeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        172 KACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       172 ~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                                     ..+.+|+|.+..+.+.|..||+.
T Consensus        79 ---------------~~t~iLR~kD~a~A~~WF~Aihs  101 (105)
T d2adza1          79 ---------------QDAVFLRAKDEASARSWAGAIQA  101 (105)
T ss_dssp             ---------------TEEEEECCSSHHHHHHHHHHHHH
T ss_pred             ---------------CceEEEEcCCHHHHHHHHHHHHH
Confidence                           35899999999999999999974

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00075  Score=46.80  Aligned_cols=40  Identities=15%  Similarity=-0.019  Sum_probs=34.6

Q ss_pred             CCCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCCc
Q psy17820          5 FNPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTDK   44 (210)
Q Consensus         5 ~~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~~   44 (210)
                      ...+++|+|.+.+...+.|+.|||+|-++.|.|++....+
T Consensus        25 r~Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~   64 (162)
T d2dfka2          25 SELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIR   64 (162)
T ss_dssp             CCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSC
T ss_pred             ceEEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCC
Confidence            4567899999998878889999999999999999876543

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.52  E-value=0.02  Score=37.00  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=21.4

Q ss_pred             eee-EEEeeCCCCCCceeEEEEEe-CCEEEEEeecCC
Q psy17820          9 KEG-WLWKQGGRYKSWKRRWFILN-DKCLYYFEYTTD   43 (210)
Q Consensus         9 ~~G-~L~K~g~~~~~wkrRwfvL~-~~~L~Yy~~~~~   43 (210)
                      ++| +|.|-++ .+.+++|||+|. +..+.||.+.++
T Consensus        12 ~~G~~l~K~~~-~~~~k~R~f~L~~d~~~i~~~~~~~   47 (119)
T d1maia_          12 LKGSQLLKVKS-SSWRRERFYKLQEDCKTIWQESRKV   47 (119)
T ss_dssp             HHCEEEEEESS-SSCEEEEEEEECTTSSEEEECCCCT
T ss_pred             HcCCeEEEeCC-CCCCEEEEEEEcCCCCEEEEeCCCC
Confidence            456 6777653 333477999996 445667765544

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.26  Score=31.95  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=27.7

Q ss_pred             CCCeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          6 NPDKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         6 ~~~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      ...++|.|.|.+..    +.|||.|-++.|.|.+....
T Consensus        26 ~li~eG~l~~~~~~----k~r~~fLF~d~Li~~k~~~~   59 (133)
T d1dbha2          26 EFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHG   59 (133)
T ss_dssp             CEEEEEEEEETTCS----SCEEEEEESSEEEEEEECTT
T ss_pred             EEEEEeEEEEecCC----CeEEEEEecCeEEEEEeccc
Confidence            35689999998742    68999999999999996544

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.75  Score=29.85  Aligned_cols=91  Identities=9%  Similarity=0.056  Sum_probs=53.4

Q ss_pred             ceeeEE-eecCccCCeeEEEEEEe--CCEEEEeccCCCCCceeEEEeCCeEEE-EecCC--------------------C
Q psy17820        101 KEGWLW-KQGGRYKSWKRRWFILN--DKCLYYFEYTTDKEPRGIIPLENIQVR-EVHDR--------------------H  156 (210)
Q Consensus       101 ~~G~L~-k~~~~~~~wk~r~fvL~--~~~L~yy~~~~~~~~~~~i~L~~~~v~-~~~~~--------------------~  156 (210)
                      .+|-.. |.......-+.+.|.|.  +..|++ .++.  .....|+|..+.-. .....                    .
T Consensus         8 ~~G~~f~K~~~~~~~~~~~~frlD~~g~~L~W-~~~~--k~~~~l~i~~I~evR~G~~~~~~k~~kl~~~~~~~~~~~~~   84 (131)
T d2zkmx3           8 SQGERFIKWDDETTVASPVILRVDPKGYYLYW-TYQS--KEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSF   84 (131)
T ss_dssp             HHCEEEEEECTTTCCEEEEEEEECTTSCEEEE-EETT--SCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCG
T ss_pred             hCCCeEEEEcCCCCccceEEEEECCCCCEEEE-ECCC--CceeEEEecceeeEEeccccCCccHHHHhhhhhccCcCCCc
Confidence            455544 33333345567788884  345544 4432  33567888876433 32111                    0


Q ss_pred             CcceEEEEeCCceeeeeeecCCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        157 KPHCFELFTSGFEFIKACKTDSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       157 ~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                      ...||.|+.....               .+.+.+.|.|.|+++.+.|+..|+.
T Consensus        85 e~~~ftIvyg~~~---------------v~l~~l~lVA~s~~~a~~W~~gL~~  122 (131)
T d2zkmx3          85 LLKTLTVVSGPDM---------------VDLTFHNFVSYKENVGKAWAEDVLA  122 (131)
T ss_dssp             GGTEEEEEECSSS---------------SSCEEEEEEESSSSHHHHHHHHHHH
T ss_pred             cccEEEEEECCCc---------------ccceEEEEEeCCHHHHHHHHHHHHH
Confidence            1237887765320               0136889999999999999998864

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.40  E-value=1.1  Score=29.80  Aligned_cols=80  Identities=18%  Similarity=0.325  Sum_probs=55.0

Q ss_pred             EEEEEeCCEEEEeccCCC----------------CC---ceeEEEeCCeEEEEecC--CCCcceEEEEeCCceeeeeeec
Q psy17820        118 RWFILNDKCLYYFEYTTD----------------KE---PRGIIPLENIQVREVHD--RHKPHCFELFTSGFEFIKACKT  176 (210)
Q Consensus       118 r~fvL~~~~L~yy~~~~~----------------~~---~~~~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~~~~~~~~  176 (210)
                      .-||.+...+..|+....                ..   -+-.|++...+|.....  ......++|++...+.      
T Consensus        53 ~~FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQVR~~~~~~~es~~vwEiiH~kSe~------  126 (162)
T d1foea2          53 AAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSES------  126 (162)
T ss_dssp             EEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTG------
T ss_pred             EEEEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeEeecccccCCCcceEEEEEeecccc------
Confidence            347888888888875321                11   23468888888877653  3466788988754210      


Q ss_pred             CCCCceeeecceEEEEEcCCHHHHHHHHHHHhc
Q psy17820        177 DSEGKVVEGKHTVYRMSAATAEEKDEWIKCLSL  209 (210)
Q Consensus       177 ~~~~~~~~~~~r~~~l~a~s~~e~~~Wi~al~~  209 (210)
                        +    --+++.|.|++.+.+.+..-+.+|++
T Consensus       127 --e----gRpE~vfqlc~St~E~K~~flK~Ir~  153 (162)
T d1foea2         127 --E----GRPERVFHLCCSSPESRKDFLKSVHS  153 (162)
T ss_dssp             --G----GBCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred             --c----CCcceEEEEecCCHHHHHHHHHHHHH
Confidence              0    11358999999999999999999975

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.97  E-value=0.56  Score=29.04  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=28.1

Q ss_pred             CCeeeEEEeeCCC-CCCceeEEEEEeCCEEEEEeecC
Q psy17820          7 PDKEGWLWKQGGR-YKSWKRRWFILNDKCLYYFEYTT   42 (210)
Q Consensus         7 ~~~~G~L~K~g~~-~~~wkrRwfvL~~~~L~Yy~~~~   42 (210)
                      .+++|-|.+.... .+.-++|++.|-++.|.|.+...
T Consensus         4 li~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~   40 (109)
T d1zc3b1           4 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLP   40 (109)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEEC
T ss_pred             EEEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcC
Confidence            3689999998663 44467889999999999988543

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=0.46  Score=31.08  Aligned_cols=32  Identities=22%  Similarity=0.164  Sum_probs=25.0

Q ss_pred             CeeeEEEeeCCCCCCceeEEEEEeCCEEEEEeecCC
Q psy17820          8 DKEGWLWKQGGRYKSWKRRWFILNDKCLYYFEYTTD   43 (210)
Q Consensus         8 ~~~G~L~K~g~~~~~wkrRwfvL~~~~L~Yy~~~~~   43 (210)
                      +++|-|.|..+    -+.|||.|-++.|.|-+...+
T Consensus        26 i~eG~L~k~~~----~k~r~~FLFnD~Ll~tK~~~~   57 (142)
T d1ki1b2          26 LHSGKLYKAKN----NKELYGFLFNDFLLLTQITKP   57 (142)
T ss_dssp             EEECCCBCSSS----CCCCEEEEESSEEEEEEEECC
T ss_pred             EEeeEEEEecC----CCEEEEEEecCEEEEEEeccc
Confidence            67888877643    268999999999999876544