Psyllid ID: psy17822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
HcHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHccccHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHccccHHHccc
Coil and Loop (DISEMBL)
MDPKKGIEWLIQnnlleptemGVAQFLykgeglnktaigdylgerhdfneknnllepteMGVAQFLykgeglnktaigdylgerhdfnekn
Flexible Loop (DISEMBL)
MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGdylgerhdfnekn
Low Complexity Region (SEG)
MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKN
Disordered region (IsUnstruct)
******IEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLG*********
Disordered Region (DISOPRED)
*DPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN***
Disordered Region (DISEMBL)
MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKN
Disordered Region (DISPRO)
MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
O08967	399	Cytohesin-3 OS=Mus muscul	yes	N/A	0.560	0.127	0.745	3e-15
P97696	400	Cytohesin-3 OS=Rattus nor	yes	N/A	0.560	0.127	0.745	4e-15
Q15438	398	Cytohesin-1 OS=Homo sapie	yes	N/A	0.538	0.123	0.755	1e-14
Q76MZ1	398	Cytohesin-1 OS=Chlorocebu	N/A	N/A	0.538	0.123	0.755	1e-14
O43739	400	Cytohesin-3 OS=Homo sapie	no	N/A	0.560	0.127	0.725	1e-14
P97694	398	Cytohesin-1 OS=Rattus nor	no	N/A	0.538	0.123	0.734	8e-14
Q9QX11	398	Cytohesin-1 OS=Mus muscul	no	N/A	0.538	0.123	0.734	8e-14
Q99418	400	Cytohesin-2 OS=Homo sapie	no	N/A	0.538	0.122	0.693	3e-13
Q76MY7	399	Cytohesin-2 OS=Chlorocebu	N/A	N/A	0.538	0.122	0.693	3e-13
Q2KI41	410	Cytohesin-2 OS=Bos taurus	no	N/A	0.538	0.119	0.693	3e-13

>sp|O08967|CYH3_MOUSE Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct: 79  MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 129

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.
Mus musculus (taxid: 10090)

>sp|P97696|CYH3_RAT Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct: 79  MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 129

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q15438|CYH1_HUMAN Cytohesin-1 OS=Homo sapiens GN=CYTH1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct: 75  MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 123

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Homo sapiens (taxid: 9606)

>sp|Q76MZ1|CYH1_CHLAE Cytohesin-1 OS=Chlorocebus aethiops GN=CYTH1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct: 75  MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 123

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Chlorocebus aethiops (taxid: 9534)

>sp|O43739|CYH3_HUMAN Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 44/51 (86%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER +FN K
Sbjct: 79  MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEFNIK 129

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Homo sapiens (taxid: 9606)

>sp|P97694|CYH1_RAT Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 43/49 (87%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++LI+N LL+ T   +AQFLYKGEGLNKTAIGDYLGER +F+
Sbjct: 75  MDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFS 123

Promotes guanine-nucleotide exchange on ARF6. Promotes the activation of ARF6 through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q9QX11|CYH1_MOUSE Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 43/49 (87%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++LI+N LL+ T   +AQFLYKGEGLNKTAIGDYLGER +F+
Sbjct: 75  MDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFS 123

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|Q99418|CYH2_HUMAN Cytohesin-2 OS=Homo sapiens GN=CYTH2 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 74  MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 122

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q76MY7|CYH2_CHLAE Cytohesin-2 OS=Chlorocebus aethiops GN=CYTH2 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 74  MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 122

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Chlorocebus aethiops (taxid: 9534)

>sp|Q2KI41|CYH2_BOVIN Cytohesin-2 OS=Bos taurus GN=CYTH2 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
           MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 74  MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 122

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
351698095	475	Cytohesin-1 [Heterocephalus glaber]	0.923	0.176	0.447	7e-19
328793286	269	PREDICTED: cytohesin-1-like, partial [Ap	0.560	0.189	0.843	2e-17
383860355	434	PREDICTED: cytohesin-1-like [Megachile r	0.560	0.117	0.843	3e-17
340716420	434	PREDICTED: cytohesin-1-like isoform 1 [B	0.560	0.117	0.843	3e-17
380019731	434	PREDICTED: cytohesin-1-like isoform 1 [A	0.560	0.117	0.843	3e-17
322779022	459	hypothetical protein SINV_00406 [Solenop	0.560	0.111	0.843	3e-17
307167289	441	Cytohesin-1 [Camponotus floridanus]	0.560	0.115	0.843	3e-17
350424580	414	PREDICTED: cytohesin-1-like [Bombus impa	0.560	0.123	0.843	4e-17
332028459	333	Cytohesin-1 [Acromyrmex echinatior]	0.560	0.153	0.843	4e-17
307206275	324	Cytohesin-1 [Harpegnathos saltator]	0.560	0.157	0.843	4e-17

>gi|351698095|gb|EHB01014.1| Cytohesin-1 [Heterocephalus glaber]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 73/134 (54%), Gaps = 50/134 (37%)

Query: 5   KGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK------------- 51
           +GI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN +             
Sbjct: 72  QGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAFVELHEFTD 131

Query: 52  -------------------------------------NNLLEPTEMGVAQFLYKGEGLNK 74
                                                N+LL+ T   +AQFLYKGEGLNK
Sbjct: 132 LNLVQALRKNMQRNKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNK 191

Query: 75  TAIGDYLGERHDFN 88
           TAIGDYLGER +FN
Sbjct: 192 TAIGDYLGERDEFN 205

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328793286|ref|XP_001123194.2| PREDICTED: cytohesin-1-like, partial [Apis mellifera]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 111 MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 161

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860355|ref|XP_003705656.1| PREDICTED: cytohesin-1-like [Megachile rotundata]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 111 MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 161

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716420|ref|XP_003396696.1| PREDICTED: cytohesin-1-like isoform 1 [Bombus terrestris]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 111 MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 161

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019731|ref|XP_003693756.1| PREDICTED: cytohesin-1-like isoform 1 [Apis florea]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 111 MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 161

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779022|gb|EFZ09421.1| hypothetical protein SINV_00406 [Solenopsis invicta]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 92  MDPKKGIEYLIEHNLLTPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 142

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167289|gb|EFN60957.1| Cytohesin-1 [Camponotus floridanus]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 118 MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 168

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424580|ref|XP_003493843.1| PREDICTED: cytohesin-1-like [Bombus impatiens]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 91  MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 141

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028459|gb|EGI68502.1| Cytohesin-1 [Acromyrmex echinatior]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 10 MDPKKGIEYLIEHNLLTPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 60

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206275|gb|EFN84340.1| Cytohesin-1 [Harpegnathos saltator]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGIE+LI++NLL PT   VAQFLYKGEGLNKTAIGDYLGERHDFNE+
Sbjct: 1  MDPKKGIEYLIEHNLLAPTPEDVAQFLYKGEGLNKTAIGDYLGERHDFNER 51

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
UNIPROTKB|K7EKA2	104	CYTH1 "Cytohesin-1" [Homo sapi	0.538	0.471	0.755	2e-15
UNIPROTKB|K7ENH6	86	CYTH1 "Cytohesin-1" [Homo sapi	0.538	0.569	0.755	2e-15
UNIPROTKB|K7ENQ8	272	CYTH1 "Cytohesin-1" [Homo sapi	0.538	0.180	0.755	2e-15
UNIPROTKB|K7ERV8	194	CYTH1 "Cytohesin-1" [Homo sapi	0.538	0.252	0.755	2e-15
UNIPROTKB|F1LQP0	390	Cyth3 "Cytohesin-3" [Rattus no	0.560	0.130	0.745	2.8e-15
MGI|MGI:1335107	399	Cyth3 "cytohesin 3" [Mus muscu	0.560	0.127	0.745	3e-15
ZFIN|ZDB-GENE-030131-657	399	cyth1a "cytohesin 1a" [Danio r	0.538	0.122	0.755	3e-15
RGD|620399	400	Cyth3 "cytohesin 3" [Rattus no	0.560	0.127	0.745	3e-15
UNIPROTKB|F1N830	320	CYTH1 "Uncharacterized protein	0.538	0.153	0.755	3.5e-15
UNIPROTKB|F1P7S0	388	CYTH3 "Uncharacterized protein	0.560	0.131	0.745	3.5e-15

UNIPROTKB|K7EKA2 CYTH1 "Cytohesin-1" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
             MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct:    16 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 64

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|K7ENH6 CYTH1 "Cytohesin-1" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
             MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct:    16 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 64

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|K7ENQ8 CYTH1 "Cytohesin-1" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
             MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct:    77 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 125

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|K7ERV8 CYTH1 "Cytohesin-1" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
             MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct:    86 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 134

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|F1LQP0 Cyth3 "Cytohesin-3" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
             MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct:    69 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 119

GO:0001726 "ruffle" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

MGI|MGI:1335107 Cyth3 "cytohesin 3" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
             MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct:    79 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 129

GO:0001726 "ruffle" evidence=IPI

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=ISS

GO:0090162 "establishment of epithelial cell polarity" evidence=IMP

ZFIN|ZDB-GENE-030131-657 cyth1a "cytohesin 1a" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
             MDPKKGI++LI+N+LL+ T   +A+FLYKGEGLNKTAIGDYLGER DFN
Sbjct:    77 MDPKKGIQFLIENDLLKNTSEDIARFLYKGEGLNKTAIGDYLGERDDFN 125

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0050790 "regulation of catalytic activity" evidence=IBA

RGD|620399 Cyth3 "cytohesin 3" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
             MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct:    79 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 129

GO:0001726 "ruffle" evidence=IEA;ISO

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0005886 "plasma membrane" evidence=ISO;ISS;IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA;ISO

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA;ISO

UNIPROTKB|F1N830 CYTH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
             MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct:    68 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 116

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

UNIPROTKB|F1P7S0 CYTH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query:     1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
             MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct:    68 MDPKKGIQFLIENDLLQNSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 118

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O08967	CYH3_MOUSE	No assigned EC number	0.7450	0.5604	0.1278	yes	N/A
Q15438	CYH1_HUMAN	No assigned EC number	0.7551	0.5384	0.1231	yes	N/A
Q9LPC5	BIG3_ARATH	No assigned EC number	0.5510	0.5384	0.028	yes	N/A
P97696	CYH3_RAT	No assigned EC number	0.7450	0.5604	0.1275	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
cd00171	185	cd00171, Sec7, Sec7 domain; Domain named after the	3e-13
PLN03076	1780	PLN03076, PLN03076, ARF guanine nucleotide exchang	1e-12
pfam01369	188	pfam01369, Sec7, Sec7 domain	2e-12
smart00222	189	smart00222, Sec7, Sec7 domain	3e-11
cd00171	185	cd00171, Sec7, Sec7 domain; Domain named after the	2e-09
pfam01369	188	pfam01369, Sec7, Sec7 domain	1e-07
smart00222	189	smart00222, Sec7, Sec7 domain	8e-07

>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 1  MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
            PKKGI +LI+   LE  +   +A+FLY+ EGLNK AIG+YLGE ++FN
Sbjct: 14 RKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFN 63

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity. Length = 185

>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query: 3   PKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
           PKKGIE+LI  N +  +   +A FL    GLNKT IGDYLGER D + K
Sbjct: 631 PKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLK 679

Length = 1780

>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 1  MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
            PKKGIE+LI+N L++      +A+FL +  GL+K AIG+YLG+   FN K
Sbjct: 17 KKPKKGIEYLIENGLIDEDDPKEIAKFLRETPGLDKKAIGEYLGKNDPFNRK 68

The Sec7 domain is a guanine-nucleotide-exchange-factor (GEF) for the pfam00025 family. Length = 188

>gnl|CDD|214569 smart00222, Sec7, Sec7 domain

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MDPKKGIEWLIQNNLL-EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
            PKKGI+ L +   L       VA FL K EGLNK AIGDYLGE  +FN
Sbjct: 17 DKPKKGIQSLQEKGFLANEDPQDVADFLSKNEGLNKKAIGDYLGEHDEFN 66

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors). Length = 189

>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 47 DFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 88
             EK  L + +   +A+FLY+ EGLNK AIG+YLGE ++FN
Sbjct: 22 FLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFN 63

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity. Length = 185

>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 90
          E   + E     +A+FL +  GL+K AIG+YLG+   FN K
Sbjct: 28 ENGLIDEDDPKEIAKFLRETPGLDKKAIGEYLGKNDPFNRK 68

The Sec7 domain is a guanine-nucleotide-exchange-factor (GEF) for the pfam00025 family. Length = 188

>gnl|CDD|214569 smart00222, Sec7, Sec7 domain

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 23/39 (58%), Positives = 24/39 (61%)

Query: 50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 88
          EK  L       VA FL K EGLNK AIGDYLGE  +FN
Sbjct: 28 EKGFLANEDPQDVADFLSKNEGLNKKAIGDYLGEHDEFN 66

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors). Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG0930|consensus	395		99.73
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	99.65
smart00222	187	Sec7 Sec7 domain. Domain named after the S. cerevi	99.62
KOG0931|consensus	627		99.62
cd00171	185	Sec7 Sec7 domain; Domain named after the S. cerevi	99.61
KOG0928|consensus	1386		99.6
PF01369	190	Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do	99.55
KOG0929|consensus	1514		99.25
KOG0930|consensus	395		98.85
COG5307	1024	SEC7 domain proteins [General function prediction	98.6
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.71
KOG0929|consensus	1514		97.57
cd00171	185	Sec7 Sec7 domain; Domain named after the S. cerevi	97.51
smart00222	187	Sec7 Sec7 domain. Domain named after the S. cerevi	97.47
PF01369	190	Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do	97.27
KOG0928|consensus	1386		95.7
KOG0931|consensus	627		95.52
KOG0932|consensus	774		94.14
COG5307	1024	SEC7 domain proteins [General function prediction	84.68

>KOG0930|consensus

Probab=99.73  E-value=3.5e-18  Score=129.48  Aligned_cols=69  Identities=59%  Similarity=0.933  Sum_probs=62.0

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhc-----cccCCc----hhhHHHHhhhC
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKN-----NLLEPT----EMGVAQFLYKG   69 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~-----~l~~~~----~~~Ir~FL~~~   69 (91)
                      |+|+|||+||+++.++..||++||.||+..+||+|++||+|||++++||+++     ++.++.    ..++|+||+|-
T Consensus        74 mDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dlnlVqALRQfLwSF  151 (395)
T KOG0930|consen   74 MDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDLNLVQALRQFLWSF  151 (395)
T ss_pred             CChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999999999999999986     333332    46899999875

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=99.65  E-value=1.1e-16  Score=141.24  Aligned_cols=76  Identities=43%  Similarity=0.668  Sum_probs=69.6

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY   80 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y   80 (91)
                      +|||+||+||+++|+|+++|++||+||+++++|||++||||||+++++|+++     ..+++..|.+++..+|. |+|.|
T Consensus       629 ~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~v-----l~~yv~~fdF~g~~~d~-ALR~f  702 (1780)
T PLN03076        629 RKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKV-----MHAYVDSFDFQGMEFDE-AIRAF  702 (1780)
T ss_pred             cCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHH-----HHHHHHhCCcCCCCHHH-HHHHH
Confidence            5899999999999999999999999999999999999999999999999885     56778888888888885 88888


Q ss_pred             cc
Q psy17822         81 LG   82 (91)
Q Consensus        81 Lg   82 (91)
                      |.
T Consensus       703 L~  704 (1780)
T PLN03076        703 LQ  704 (1780)
T ss_pred             HH
Confidence            75

>smart00222 Sec7 Sec7 domain

Probab=99.62  E-value=4.4e-16  Score=110.41  Aligned_cols=76  Identities=42%  Similarity=0.654  Sum_probs=64.8

Q ss_pred             CChhhHHHHHHHCCCCC-CChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLE-PTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGD   79 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~-~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~   79 (91)
                      .+|++||+||+++++++ +||.+||.||+++++|+|++||+|||++.++|.++     ....+..|.+++..+|. +++.
T Consensus        15 ~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~v-----L~~y~~~f~f~~~~i~~-ALR~   88 (187)
T smart00222       15 DKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLV-----LHAFVDLFDFSAKDLDQ-ALRE   88 (187)
T ss_pred             cCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHH-----HHHHHHhcCcCCCcHHH-HHHH
Confidence            48999999999999999 89999999999999999999999999988999885     45566666666666664 6666


Q ss_pred             hcc
Q psy17822         80 YLG   82 (91)
Q Consensus        80 yLg   82 (91)
                      ||.
T Consensus        89 ~l~   91 (187)
T smart00222       89 FLE   91 (187)
T ss_pred             HHH
Confidence            663

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).

>KOG0931|consensus

Probab=99.62  E-value=2.4e-16  Score=125.12  Aligned_cols=52  Identities=38%  Similarity=0.824  Sum_probs=49.3

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhcccc-ccchhhc
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGER-HDFNEKN   52 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~-~~fn~~~   52 (91)
                      +||.|||+||+++|||+|+|..||+||+.+.||+|.|||||||.+ .+||..|
T Consensus       210 ~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdV  262 (627)
T KOG0931|consen  210 KKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDV  262 (627)
T ss_pred             CCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHH
Confidence            589999999999999999999999999999999999999999996 5999775

>cd00171 Sec7 Sec7 domain; Domain named after the S

Probab=99.61  E-value=8.8e-16  Score=108.91  Aligned_cols=76  Identities=42%  Similarity=0.725  Sum_probs=64.3

Q ss_pred             CChhhHHHHHHHCCCC-CCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLL-EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGD   79 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l-~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~   79 (91)
                      .+|++||+||++++++ .++|.+||+||+.+++|+|.+||+|||+++++|.++     ..+.+..|.+++..+|. ++|.
T Consensus        14 ~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~v-----L~~y~~~f~f~~~~i~~-ALR~   87 (185)
T cd00171          14 RKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLV-----LHEFVDLFDFSGLRLDE-ALRK   87 (185)
T ss_pred             cCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHH-----HHHHHHhcCCCCCCHHH-HHHH
Confidence            4899999999999999 889999999999999999999999999999888775     45566666666666664 6666


Q ss_pred             hcc
Q psy17822         80 YLG   82 (91)
Q Consensus        80 yLg   82 (91)
                      +|.
T Consensus        88 ~l~   90 (185)
T cd00171          88 FLQ   90 (185)
T ss_pred             HHH
Confidence            653

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.

>KOG0928|consensus

Probab=99.60  E-value=6.3e-16  Score=132.69  Aligned_cols=74  Identities=31%  Similarity=0.530  Sum_probs=68.3

Q ss_pred             CChhhHHHHHHHCCCCCC--ChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEP--TEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIG   78 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~--~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig   78 (91)
                      .||||||+||+++|+|++  ||..+|.||+++++|||++||+|||++++..+.       -+++.+|.|+|.+||. |+|
T Consensus       527 e~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vL-------n~Fi~tFdF~gmrlDe-ALR  598 (1386)
T KOG0928|consen  527 EDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVL-------NEFIGTFDFQGMRLDE-ALR  598 (1386)
T ss_pred             cChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHH-------HHHHHhcCcCCCcHHH-HHH
Confidence            489999999999999995  899999999999999999999999999974444       7889999999999995 999


Q ss_pred             hhcc
Q psy17822         79 DYLG   82 (91)
Q Consensus        79 ~yLg   82 (91)
                      -||.
T Consensus       599 l~L~  602 (1386)
T KOG0928|consen  599 LFLE  602 (1386)
T ss_pred             HHHH
Confidence            9995

>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []

Probab=99.55  E-value=3.7e-15  Score=105.74  Aligned_cols=75  Identities=39%  Similarity=0.748  Sum_probs=61.4

Q ss_pred             ChhhHHHHHHHCCCC--CCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhh
Q psy17822          2 DPKKGIEWLIQNNLL--EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGD   79 (91)
Q Consensus         2 ~PkkGi~~l~~~g~l--~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~   79 (91)
                      +|++||+||+++|++  +++|.+||+||+.+++|+|.+||+|||.+.++|..+     ..+.+..|.+++..|+. |++.
T Consensus        18 ~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~v-----L~~y~~~fdf~~~~i~~-ALR~   91 (190)
T PF01369_consen   18 NPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDV-----LKEYISLFDFSGMSIDE-ALRK   91 (190)
T ss_dssp             SHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHH-----HHHHHHTSS-TTS-HHH-HHHH
T ss_pred             CHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHH-----HHHHHHHcCCcCccHHH-HHHH
Confidence            799999999999998  779999999999999999999999999998999886     45666677777777774 7776


Q ss_pred             hcc
Q psy17822         80 YLG   82 (91)
Q Consensus        80 yLg   82 (91)
                      +|.
T Consensus        92 ~l~   94 (190)
T PF01369_consen   92 FLS   94 (190)
T ss_dssp             HCT
T ss_pred             hcc
Confidence            664

It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....

>KOG0929|consensus

Probab=99.25  E-value=3.7e-12  Score=111.12  Aligned_cols=52  Identities=44%  Similarity=0.740  Sum_probs=50.3

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhc
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKN   52 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~   52 (91)
                      .+|++||+||++++++.++|.+||.||+.+.+|+|+.+|+|||+++++|+.+
T Consensus       527 ~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~V  578 (1514)
T KOG0929|consen  527 GKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKAV  578 (1514)
T ss_pred             cCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHHH
Confidence            3799999999999999999999999999999999999999999999999986

>KOG0930|consensus

Probab=98.85  E-value=1.1e-09  Score=83.55  Aligned_cols=41  Identities=63%  Similarity=1.033  Sum_probs=37.5

Q ss_pred             hhccccCCchhhHHHHhhhCcCCchhhhhhhcccCcccccc
Q psy17822         50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK   90 (91)
Q Consensus        50 ~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~~   90 (91)
                      ++.+++..+|++||.||..|+||+|||||+|||++++||++
T Consensus        84 ~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~  124 (395)
T KOG0930|consen   84 IENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQ  124 (395)
T ss_pred             HHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHH
Confidence            33477889999999999999999999999999999999985

>COG5307 SEC7 domain proteins [General function prediction only]

Probab=98.60  E-value=2.1e-08  Score=86.07  Aligned_cols=76  Identities=32%  Similarity=0.513  Sum_probs=63.2

Q ss_pred             CChhhHHHHHHHCCCCCC-ChHHHHHHHhhCCC-CChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKGEG-LNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIG   78 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~-~p~~ia~Fl~~~~~-L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig   78 (91)
                      .+|++||..|.+.+++.. ++.++|.||..+.+ ++|+.+|+|||++++.|..+     .-+.|..|.+++..+|. |+|
T Consensus       280 ~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~v-----L~~Fi~~fdFk~~~i~e-ALR  353 (1024)
T COG5307         280 EKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAV-----LREFISLFDFKGLDIDE-ALR  353 (1024)
T ss_pred             hcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHH-----HHHHHHhcCcCCCcHHH-HHH
Confidence            379999999999999997 69999999999765 99999999999998777775     45667777777777775 777


Q ss_pred             hhcc
Q psy17822         79 DYLG   82 (91)
Q Consensus        79 ~yLg   82 (91)
                      .||+
T Consensus       354 ~lL~  357 (1024)
T COG5307         354 KLLQ  357 (1024)
T ss_pred             HHHH
Confidence            7664

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.71  E-value=1.8e-05  Score=71.43  Aligned_cols=37  Identities=49%  Similarity=0.738  Sum_probs=34.0

Q ss_pred             cccCCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         53 NLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        53 ~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      .+++.+|++||+||+++.+|||++||+|||+++++|+
T Consensus       642 ~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~  678 (1780)
T PLN03076        642 NKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSL  678 (1780)
T ss_pred             CCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHH
Confidence            5557789999999999999999999999999999875

>KOG0929|consensus

Probab=97.57  E-value=5.5e-05  Score=67.28  Aligned_cols=56  Identities=36%  Similarity=0.653  Sum_probs=45.1

Q ss_pred             hhhhhhhccccc---cchhhccccCCchhhHHHHhhhCcCCchhhhhhhcccCcccccc
Q psy17822         35 KTAIGDYLGERH---DFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK   90 (91)
Q Consensus        35 k~~iGeyLg~~~---~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~~   90 (91)
                      .+.|-.|-+.++   ++..+.+..+.+|+++++||..+.+|+++++|+|||++|+||++
T Consensus       519 ~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~  577 (1514)
T KOG0929|consen  519 QEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKA  577 (1514)
T ss_pred             HHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHH
Confidence            445555555543   45556677788999999999999999999999999999999863

>cd00171 Sec7 Sec7 domain; Domain named after the S

Probab=97.51  E-value=5.7e-05  Score=53.60  Aligned_cols=34  Identities=53%  Similarity=0.988  Sum_probs=31.2

Q ss_pred             CCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         56 EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        56 ~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      +.++.+||+||+++.+||+.+||+|||.++++|.
T Consensus        31 ~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~   64 (185)
T cd00171          31 DDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNS   64 (185)
T ss_pred             CCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHH
Confidence            5579999999999999999999999999988774

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.

>smart00222 Sec7 Sec7 domain

Probab=97.47  E-value=7.1e-05  Score=53.06  Aligned_cols=37  Identities=57%  Similarity=0.897  Sum_probs=32.4

Q ss_pred             cccC-CchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         53 NLLE-PTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        53 ~l~~-~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      .++. .+|.+|++||++..+||+.+||+|||.++++|.
T Consensus        28 ~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~   65 (187)
T smart00222       28 GFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNR   65 (187)
T ss_pred             CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHH
Confidence            3444 579999999999999999999999999988875

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).

>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []

Probab=97.27  E-value=0.00014  Score=51.49  Aligned_cols=34  Identities=41%  Similarity=0.827  Sum_probs=29.5

Q ss_pred             CCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         56 EPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        56 ~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      ..+|.+|++||....+|++.++|+|||.++++|.
T Consensus        35 ~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~   68 (190)
T PF01369_consen   35 EDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNR   68 (190)
T ss_dssp             -SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHH
T ss_pred             CCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHH
Confidence            4579999999999999999999999999888875

It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....

>KOG0928|consensus

Probab=95.70  E-value=0.0044  Score=55.07  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             CchhhHHHHhhhCcCCchhhhhhhcccCcccc
Q psy17822         57 PTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN   88 (91)
Q Consensus        57 ~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~   88 (91)
                      ..|..+++|+.++.||||.+||+||+.++...
T Consensus       546 ~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~  577 (1386)
T KOG0928|consen  546 LDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVS  577 (1386)
T ss_pred             CChHHHHHHHHhCccccHHHHHHHhcCcchHH
Confidence            66899999999999999999999999998743

>KOG0931|consensus

Probab=95.52  E-value=0.011  Score=48.23  Aligned_cols=39  Identities=33%  Similarity=0.718  Sum_probs=33.6

Q ss_pred             cchhhccccCCchhhHHHHhhhCcCCchhhhhhhcccCc
Q psy17822         47 DFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERH   85 (91)
Q Consensus        47 ~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~   85 (91)
                      ++.++..++..+|..||+||+.-.||.+.+||+|||...
T Consensus       217 Q~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~  255 (627)
T KOG0931|consen  217 QYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQ  255 (627)
T ss_pred             hhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhcccc
Confidence            445555777888999999999999999999999999864

>KOG0932|consensus

Probab=94.14  E-value=0.04  Score=45.98  Aligned_cols=57  Identities=26%  Similarity=0.493  Sum_probs=50.0

Q ss_pred             hHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhhcc
Q psy17822         20 EMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLG   82 (91)
Q Consensus        20 p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg   82 (91)
                      ..-+|+=|+.-++.-|..+..+||++.+|...|     ..+++.-|.|+|.+||. +++.||-
T Consensus       307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lV-----a~eYL~fF~Fsg~tlD~-ALR~Flk  363 (774)
T KOG0932|consen  307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLV-----AEEYLSFFQFSGMTLDQ-ALREFLK  363 (774)
T ss_pred             HHHHHHHHHHhhCccHHHHHHHhcccchHHHHH-----HHHHHHHhhccCccHHH-HHHHHHH
Confidence            567888999999999999999999999999886     56788888999999996 8888874

>COG5307 SEC7 domain proteins [General function prediction only]

Probab=84.68  E-value=0.58  Score=41.26  Aligned_cols=34  Identities=35%  Similarity=0.559  Sum_probs=29.5

Q ss_pred             CCchhhHHHHhhhCcC-CchhhhhhhcccCccccc
Q psy17822         56 EPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        56 ~~~~~~Ir~FL~~~~~-ld~~~ig~yLg~~~~~~~   89 (91)
                      ..++.+++.||+...+ +|+..+|+|||++++.|.
T Consensus       297 ~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~  331 (1024)
T COG5307         297 SDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNN  331 (1024)
T ss_pred             cccchHHHHHHHhccCcccHHHHHHHhcCCchhHH
Confidence            3457899999999998 999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
2r0d_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		4e-16
1bc9_A	200	Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average		9e-16
4a4p_A	192	Crystal Structure Of The Sec7 Domain From Human Cyt		1e-15
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		1e-15
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		2e-10
1pbv_A	195	Sec7 Domain Of The Exchange Factor Arno Length = 19		2e-14
1r8q_E	203	Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A		2e-14
1r8s_E	203	Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain C		2e-14
1r8m_E	203	Sec7 Domain Of The Arf Exchange Factor Arno With Br		3e-14
3ltl_A	211	Crystal Structure Of Human Big1 Sec7 Domain Length		2e-05
3l8n_A	202	Crystal Structure Of A Domain Of Brefeldin A-Inhibi		5e-05

>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct: 27 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 77

>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure Length = 200

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct: 19 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 67

>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1 Length = 192

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          MDPKKGI++LI+N+LL+ T   +AQFLYKGEGLNKTAIGDYLGER +FN
Sbjct: 19 MDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFN 67

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/50 (74%), Positives = 43/50 (86%)
Query: 2  DPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          DPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct: 28 DPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 77

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/40 (72%), Positives = 33/40 (82%)
Query: 51 KNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 90
          +N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct: 38 ENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 77

>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 23 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 71

>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain Length = 203

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 25 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 73

>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine Length = 203

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 25 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 73

>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin A- Sensitizing Mutations Length = 203

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N
Sbjct: 25 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 73

>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain Length = 211

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 3  PKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE 50
          PK+GI++L +  +L  T   +AQFL++ E L+ T +G++LG+   FN+
Sbjct: 33 PKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNK 80

>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guanine Nucleotide-Exchange Protein 2 (Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human). Northeast Structural Genomics Consortium Target Id Hr5562a Length = 202

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 3  PKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFN 49
          PK+GI++L +   L  +   +AQFL++ E L+ T +GD+LG+   FN
Sbjct: 24 PKRGIQFLQEQGXLGTSVEDIAQFLHQEERLDSTQVGDFLGDSARFN 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	1e-15
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	2e-15
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	2e-08
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	9e-14
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	3e-07
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	4e-11
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	3e-09

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347

 Score = 68.9 bits (168), Expect = 1e-15
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGI++LI+N+LL+ +   VAQFLYKGEGLNKT IGDYLGER DFN K
Sbjct: 27 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK 77

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203

 Score = 66.7 bits (163), Expect = 2e-15
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N  
Sbjct: 25 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLA 75

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 10/53 (18%)

Query: 48 FNEK----------NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 90
          FN            N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N  
Sbjct: 23 FNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLA 75

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211

 Score = 62.4 bits (152), Expect = 9e-14
 Identities = 19/51 (37%), Positives = 34/51 (66%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
            PK+GI++L +  +L  T   +AQFL++ E L+ T +G++LG+   FN++
Sbjct: 31 KKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKE 81

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 10/53 (18%)

Query: 48 FNEK----------NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 90
          FN+K            +L  T   +AQFL++ E L+ T +G++LG+   FN++
Sbjct: 29 FNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKE 81

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 1  MDPKKGIEWLIQNNLLEPTE--MGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 51
            PK GI  + +            +A+F ++  + L+  A+GDYL      N++
Sbjct: 20 AKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 73

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 1  MDPKKGIEWLIQNNLL-EPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFN 49
            PKKGI  LI+   +   ++  +A+FL+     +NK  IG  L      +
Sbjct: 36 EKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVS 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	99.79
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	99.78
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.71
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	99.66
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	99.52
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	98.23
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	98.16
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	97.91
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	97.22
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	97.01

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A

Probab=99.79  E-value=3.3e-20  Score=133.54  Aligned_cols=76  Identities=32%  Similarity=0.563  Sum_probs=64.8

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY   80 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y   80 (91)
                      +||++||+||+++|+|+++|.+||+||+++++|||++||+|||++++||.++     ..+.|..|.+++..||. |+|.|
T Consensus        31 ~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~v-----L~~yv~~fdF~~~~ld~-ALR~f  104 (211)
T 3ltl_A           31 KKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEV-----MYAYVDQHDFSGKDFVS-ALRMF  104 (211)
T ss_dssp             HCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHH-----HHHHHHTSCCCSSCHHH-HHHHH
T ss_pred             cCHHHHHHHHHHcCCCCCCHHHHHHHHHhCcCccHHHHHHHHhccchhHHHH-----HHHHHHhcCCCCCCHHH-HHHHH
Confidence            4899999999999999999999999999999999999999999999999886     45566666666666664 66666


Q ss_pred             cc
Q psy17822         81 LG   82 (91)
Q Consensus        81 Lg   82 (91)
                      |.
T Consensus       105 L~  106 (211)
T 3ltl_A          105 LE  106 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A

Probab=99.78  E-value=8.4e-20  Score=130.75  Aligned_cols=76  Identities=50%  Similarity=0.771  Sum_probs=65.2

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY   80 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y   80 (91)
                      +||++||+||+++|+|+++|++||+||+.+++|+|++||+|||++++||.++     ..+.+..|.+++..||. |+|.|
T Consensus        25 ~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~v-----l~~y~~~fdF~~~~ld~-ALR~f   98 (203)
T 1r8s_E           25 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV-----LHAFVDLHEFTDLNLVQ-ALRQF   98 (203)
T ss_dssp             HCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHH-----HHHHHHTCCCTTCCHHH-HHHHH
T ss_pred             hCHHHHHHHHHHCCCCCCCHHHHHHHHHHCcCcCHHHHHHHHhccchHHHHH-----HHHHHHhcCCCCCcHHH-HHHHH
Confidence            4899999999999999999999999999999999999999999999999886     45566666666666664 66666


Q ss_pred             cc
Q psy17822         81 LG   82 (91)
Q Consensus        81 Lg   82 (91)
                      |.
T Consensus        99 L~  100 (203)
T 1r8s_E           99 LW  100 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.71  E-value=2.6e-18  Score=129.58  Aligned_cols=76  Identities=55%  Similarity=0.834  Sum_probs=65.4

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY   80 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y   80 (91)
                      ++|++||+||+++|+|+++|++||+||+.+++|+|++||+|||++++||.++     ..+.+..|.+++..||. |++.|
T Consensus        27 ~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~v-----l~~~~~~~~f~~~~~~~-alR~~  100 (347)
T 2r09_A           27 MDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKV-----LQAFVELHEFADLNLVQ-ALRQF  100 (347)
T ss_dssp             HCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHH-----HHHHHHTSCCTTCCHHH-HHHHH
T ss_pred             hCHHHHHHHHHHCCCCCCCHHHHHHHHHhCcCcCHHHHHHHhcCCCchHHHH-----HHHHHHhcCcCCCCHHH-HHHHH
Confidence            4899999999999999999999999999999999999999999999999886     45566666666666664 66666


Q ss_pred             cc
Q psy17822         81 LG   82 (91)
Q Consensus        81 Lg   82 (91)
                      |.
T Consensus       101 l~  102 (347)
T 2r09_A          101 LW  102 (347)
T ss_dssp             TT
T ss_pred             HH
Confidence            64

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*

Probab=99.66  E-value=5.3e-17  Score=118.04  Aligned_cols=74  Identities=27%  Similarity=0.430  Sum_probs=61.2

Q ss_pred             CChhhHHHHHHHCCCCCC-ChHHHHHHHhhC-CCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEP-TEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIG   78 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~-~p~~ia~Fl~~~-~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig   78 (91)
                      ++||+||+||+++|+|++ +|.+||+||+.+ ++|||++||+|||++.  |.++     ..+++..|.+++..||. |+|
T Consensus        36 ~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~v-----L~~yv~~fdF~g~~ld~-ALR  107 (230)
T 1ku1_A           36 EKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSL-----LNEYIRLFDFSGLRVDE-AIR  107 (230)
T ss_dssp             HCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHH-----HHHHHHTSCCTTCCHHH-HHH
T ss_pred             cCHHHHHHHHHHCCCcCCCCHHHHHHHHHHcCcccCHHHHHHHHcCcc--HHHH-----HHHHHhhccCCCCCHHH-HHH
Confidence            489999999999999986 899999999875 5799999999999866  4443     36677777777777775 777


Q ss_pred             hhcc
Q psy17822         79 DYLG   82 (91)
Q Consensus        79 ~yLg   82 (91)
                      .||.
T Consensus       108 ~fL~  111 (230)
T 1ku1_A          108 ILLT  111 (230)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            7775

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B

Probab=99.52  E-value=2.1e-15  Score=115.44  Aligned_cols=76  Identities=21%  Similarity=0.352  Sum_probs=62.5

Q ss_pred             CChhhHHHHHHHCCC--CCCChHHHHHHHhh-CCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhh
Q psy17822          1 MDPKKGIEWLIQNNL--LEPTEMGVAQFLYK-GEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAI   77 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~--l~~~p~~ia~Fl~~-~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~i   77 (91)
                      +|||+||+||+++..  ..++|.+||+||+. +++|||++||+|||+++++|.++     ..+.+..|.+++..||. ++
T Consensus        20 ~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~V-----L~~yv~~fdF~g~~ld~-AL   93 (356)
T 1xsz_A           20 AKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQV-----LKAFTSQMNFNGQSFVE-GL   93 (356)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHH-----HHHHHHTSCCTTSCHHH-HH
T ss_pred             cCHHHHHHHHHHhccccCCCCHHHHHHHHHhcCCCCCHHHHHHHHcCCchHHHHH-----HHHHHHhcCCCCCCHHH-HH
Confidence            489999999998632  23579999999987 79999999999999999999886     56677777777777774 77


Q ss_pred             hhhcc
Q psy17822         78 GDYLG   82 (91)
Q Consensus        78 g~yLg   82 (91)
                      |.||.
T Consensus        94 R~fL~   98 (356)
T 1xsz_A           94 RTFLK   98 (356)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77765

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A

Probab=98.23  E-value=3.5e-07  Score=65.59  Aligned_cols=40  Identities=35%  Similarity=0.693  Sum_probs=35.1

Q ss_pred             hhccccCCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         50 EKNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        50 ~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      ++..++..+|.+||+||+++.+|||++||+|||++++||.
T Consensus        41 ~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~   80 (211)
T 3ltl_A           41 QEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNK   80 (211)
T ss_dssp             HHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHH
T ss_pred             HHcCCCCCCHHHHHHHHHhCcCccHHHHHHHHhccchhHH
Confidence            3345667789999999999999999999999999999875

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A

Probab=98.16  E-value=6.1e-07  Score=63.95  Aligned_cols=38  Identities=68%  Similarity=1.073  Sum_probs=34.1

Q ss_pred             ccccCCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         52 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        52 ~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      ..++..+|.+||+||+.+.+|||++||+|||++++||.
T Consensus        37 ~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~   74 (203)
T 1r8s_E           37 NELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNL   74 (203)
T ss_dssp             TTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCcCcCHHHHHHHHhccchHHH
Confidence            35556789999999999999999999999999999875

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=97.91  E-value=3.1e-06  Score=63.50  Aligned_cols=39  Identities=74%  Similarity=1.148  Sum_probs=34.5

Q ss_pred             ccccCCchhhHHHHhhhCcCCchhhhhhhcccCcccccc
Q psy17822         52 NNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK   90 (91)
Q Consensus        52 ~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~~   90 (91)
                      ..++..+|.+||+||+.+.+||+++||+|||++++||++
T Consensus        39 ~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~   77 (347)
T 2r09_A           39 NDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIK   77 (347)
T ss_dssp             TTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHhCcCcCHHHHHHHhcCCCchHHH
Confidence            355566899999999999999999999999999998853

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B

Probab=97.22  E-value=8.2e-05  Score=56.92  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=29.1

Q ss_pred             chhhHHHHhhh-CcCCchhhhhhhcccCccccc
Q psy17822         58 TEMGVAQFLYK-GEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        58 ~~~~Ir~FL~~-~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      +|.+|++||+. +.+||+++||+|||+++++|.
T Consensus        40 ~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~   72 (356)
T 1xsz_A           40 PNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQ   72 (356)
T ss_dssp             HHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHH
T ss_pred             CHHHHHHHHHhcCCCCCHHHHHHHHcCCchHHH
Confidence            57899999987 689999999999999998875

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*

Probab=97.01  E-value=0.00028  Score=50.97  Aligned_cols=34  Identities=24%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             cccC-CchhhHHHHhhhC-cCCchhhhhhhcccCcc
Q psy17822         53 NLLE-PTEMGVAQFLYKG-EGLNKTAIGDYLGERHD   86 (91)
Q Consensus        53 ~l~~-~~~~~Ir~FL~~~-~~ld~~~ig~yLg~~~~   86 (91)
                      .++. .+|.+||+||+++ .+|||++||+|||+++.
T Consensus        49 g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~n   84 (230)
T 1ku1_A           49 GFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK   84 (230)
T ss_dssp             TSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGGG
T ss_pred             CCcCCCCHHHHHHHHHHcCcccCHHHHHHHHcCccH
Confidence            4444 4789999999886 47999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1r8se_	187	a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s	2e-13
d1ku1a_	211	a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2	1e-10
d1xsza1	197	a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio	3e-09
d1xsza1	197	a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio	6e-05

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 1  MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEK 51
          MDPKKGI++L++N LL+ T   +A+FLYKGEGLNKTAIGDYLGER + N  
Sbjct: 13 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLA 63

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (127), Expect = 1e-10
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 1  MDPKKGIEWLIQNNLL-EPTEMGVAQFLYKGEG-LNKTAIGDYLGERHDFN 49
            PKKGI  LI+   +   ++  +A+FL+     +NK  IG  L      +
Sbjct: 24 EKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVS 74

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (117), Expect = 3e-09
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 1  MDPKKGIEWLIQ--NNLLEPTEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 51
            PK GI  + +            +A+F ++  + L+  A+GDYL      N++
Sbjct: 18 AKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 71

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (86), Expect = 6e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 52 NNLLEPTEMGVAQFLYKG-EGLNKTAIGDYLGERHDFNEK 90
                    +A+F ++  + L+  A+GDYL      N++
Sbjct: 32 EQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1r8se_	187	Exchange factor ARNO {Human (Homo sapiens) [TaxId:	99.71
d1ku1a_	211	ARF guanine-exchange factor 2, Gea2 {Baker's yeast	99.65
d1xsza1	197	RalF, N-terminal domain {Legionella pneumophila [T	99.57
d1r8se_	187	Exchange factor ARNO {Human (Homo sapiens) [TaxId:	97.95
d1xsza1	197	RalF, N-terminal domain {Legionella pneumophila [T	97.46
d1ku1a_	211	ARF guanine-exchange factor 2, Gea2 {Baker's yeast	97.28

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.2e-18  Score=120.01  Aligned_cols=75  Identities=51%  Similarity=0.799  Sum_probs=60.4

Q ss_pred             CChhhHHHHHHHCCCCCCChHHHHHHHhhCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIGDY   80 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~~p~~ia~Fl~~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~y   80 (91)
                      .+|++||+||+++++++++|++||+||+++++|+|++||+|||.+.++|.++     ....+..|.+++..||. +++.+
T Consensus        13 ~~p~~gi~~l~~~~~~~~~p~~iA~fL~~~~~L~k~~ige~Lg~~~~~~~~v-----l~~y~~~f~f~~~~i~~-ALR~~   86 (187)
T d1r8se_          13 MDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV-----LHAFVDLHEFTDLNLVQ-ALRQF   86 (187)
T ss_dssp             HCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHH-----HHHHHHTCCCTTCCHHH-HHHHH
T ss_pred             hCHHHHHHHHHHCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHccccHHHHHH-----HHHHHHhcCcCCCcHHH-HHHHH
Confidence            3899999999999999999999999999999999999999999999999885     33444444444555543 44444


Q ss_pred             c
Q psy17822         81 L   81 (91)
Q Consensus        81 L   81 (91)
                      |
T Consensus        87 l   87 (187)
T d1r8se_          87 L   87 (187)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4.5e-17  Score=115.27  Aligned_cols=74  Identities=27%  Similarity=0.430  Sum_probs=57.4

Q ss_pred             CChhhHHHHHHHCCCCCC-ChHHHHHHHh-hCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhh
Q psy17822          1 MDPKKGIEWLIQNNLLEP-TEMGVAQFLY-KGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIG   78 (91)
Q Consensus         1 ~~PkkGi~~l~~~g~l~~-~p~~ia~Fl~-~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig   78 (91)
                      .||++||+||+++|+|++ +|++||+||+ .+++|||++||||||++.  |.++     ..+.+..|.+++..||. |+|
T Consensus        24 ~~pk~Gi~~L~~~~~i~~~~~~~iA~FL~~~~~~Ldk~~iGeyLg~~~--n~~v-----L~~y~~~fdf~~~~id~-ALR   95 (211)
T d1ku1a_          24 EKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSL-----LNEYIRLFDFSGLRVDE-AIR   95 (211)
T ss_dssp             HCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHH-----HHHHHHTSCCTTCCHHH-HHH
T ss_pred             hCHHHHHHHHHHCCCcCCCCHHHHHHHHHhcCCCCCHHHHHHHHCCCc--hHHH-----HHHHHhccCcCCCCHHH-HHH
Confidence            389999999999999966 6999999996 577899999999999865  4443     34556666666666664 666


Q ss_pred             hhcc
Q psy17822         79 DYLG   82 (91)
Q Consensus        79 ~yLg   82 (91)
                      .||.
T Consensus        96 ~~l~   99 (211)
T d1ku1a_          96 ILLT   99 (211)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            6654

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

Probab=99.57  E-value=2.7e-16  Score=110.25  Aligned_cols=75  Identities=21%  Similarity=0.383  Sum_probs=60.0

Q ss_pred             ChhhHHHHHHHC--CCCCCChHHHHHHHh-hCCCCChhhhhhhccccccchhhccccCCchhhHHHHhhhCcCCchhhhh
Q psy17822          2 DPKKGIEWLIQN--NLLEPTEMGVAQFLY-KGEGLNKTAIGDYLGERHDFNEKNNLLEPTEMGVAQFLYKGEGLNKTAIG   78 (91)
Q Consensus         2 ~PkkGi~~l~~~--g~l~~~p~~ia~Fl~-~~~~L~k~~iGeyLg~~~~fn~~~~l~~~~~~~Ir~FL~~~~~ld~~~ig   78 (91)
                      +|++||+||++.  ..+.++|.+||+||+ ++++|||++||||||.++++|.++     ....+..|.+++..+|. ++|
T Consensus        19 ~P~~gI~~l~~~~~~~~~~~~~~ia~fl~~~~~~L~k~~iGeyLg~~~~~n~~v-----l~~y~~~f~f~~~~id~-ALR   92 (197)
T d1xsza1          19 KPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQV-----LKAFTSQMNFNGQSFVE-GLR   92 (197)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHH-----HHHHHHTSCCTTSCHHH-HHH
T ss_pred             CHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCCCCCHHHHHHHHcCCchHHHHH-----HHHHHHhCCcCCCCHHH-HHH
Confidence            799999999885  467788999999997 578999999999999999999875     44556666666666663 666


Q ss_pred             hhcc
Q psy17822         79 DYLG   82 (91)
Q Consensus        79 ~yLg   82 (91)
                      .||.
T Consensus        93 ~~l~   96 (197)
T d1xsza1          93 TFLK   96 (197)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.3e-06  Score=59.57  Aligned_cols=39  Identities=67%  Similarity=1.056  Sum_probs=34.4

Q ss_pred             hccccCCchhhHHHHhhhCcCCchhhhhhhcccCccccc
Q psy17822         51 KNNLLEPTEMGVAQFLYKGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        51 ~~~l~~~~~~~Ir~FL~~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      +..++..+|.+||+||+++.+||+.+||+|||.++++|.
T Consensus        24 ~~~~~~~~p~~iA~fL~~~~~L~k~~ige~Lg~~~~~~~   62 (187)
T d1r8se_          24 ENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNL   62 (187)
T ss_dssp             HTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHH
T ss_pred             HCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHccccHHHH
Confidence            345556789999999999999999999999999998875

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

Probab=97.46  E-value=1.6e-05  Score=54.47  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=29.1

Q ss_pred             CchhhHHHHhh-hCcCCchhhhhhhcccCccccc
Q psy17822         57 PTEMGVAQFLY-KGEGLNKTAIGDYLGERHDFNE   89 (91)
Q Consensus        57 ~~~~~Ir~FL~-~~~~ld~~~ig~yLg~~~~~~~   89 (91)
                      .++++|++||+ .+.+|||.+||+|||.++++|.
T Consensus        37 ~~~~~ia~fl~~~~~~L~k~~iGeyLg~~~~~n~   70 (197)
T d1xsza1          37 SPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQ   70 (197)
T ss_dssp             CHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCHHHHHHHHcCCchHHH
Confidence            45789999996 6788999999999999998874

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=5e-05  Score=52.44  Aligned_cols=34  Identities=24%  Similarity=0.506  Sum_probs=27.2

Q ss_pred             ccc-CCchhhHHHHhh-hCcCCchhhhhhhcccCcc
Q psy17822         53 NLL-EPTEMGVAQFLY-KGEGLNKTAIGDYLGERHD   86 (91)
Q Consensus        53 ~l~-~~~~~~Ir~FL~-~~~~ld~~~ig~yLg~~~~   86 (91)
                      .++ +.+|++||+||+ ...+|||++||+|||+++.
T Consensus        37 ~~i~~~~~~~iA~FL~~~~~~Ldk~~iGeyLg~~~n   72 (211)
T d1ku1a_          37 GFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK   72 (211)
T ss_dssp             TSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGGG
T ss_pred             CCcCCCCHHHHHHHHHhcCCCCCHHHHHHHHCCCch
Confidence            444 446899999996 5667999999999998653