Psyllid ID: psy17856

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MSTRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE
Secondary Structure (PSIPRED)
ccEEccccccccccccccEEcccccHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccEEEEEEEccHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mstrsayqvylipdehihyevdltggpdqvylsdredqsilctgesgagktenTKKVIQYLAYVAaskpkgsstaphse
Flexible Loop (DISEMBL)
MSTRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCtgesgagktentKKVIQYLAYVaaskpkgsstaphse
Low Complexity Region (SEG)
MSTRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE
Disordered region (IsUnstruct)
*****AYQVYLIPDEHIHYEVDLTGGPDQVYLSDR**QSILCT**********TKKVIQYLAYVA**************
Disordered Region (DISOPRED)
*STRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL******************
Disordered Region (DISEMBL)
MSTRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA*************
Disordered Region (DISPRO)
***RSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q99323	2057	Myosin heavy chain, non-m	yes	N/A	0.582	0.022	0.891	7e-17
Q7Z406	1995	Myosin-14 OS=Homo sapiens	yes	N/A	0.607	0.024	0.775	8e-13
Q6URW6	2000	Myosin-14 OS=Mus musculus	yes	N/A	0.607	0.024	0.775	1e-12
P35579	1960	Myosin-9 OS=Homo sapiens	no	N/A	0.455	0.018	0.916	6e-12
Q61879	1976	Myosin-10 OS=Mus musculus	no	N/A	0.455	0.018	0.916	1e-11
P35580	1976	Myosin-10 OS=Homo sapiens	no	N/A	0.455	0.018	0.916	1e-11
Q27991	1976	Myosin-10 OS=Bos taurus G	no	N/A	0.455	0.018	0.916	1e-11
Q63862	1327	Myosin-11 (Fragments) OS=	no	N/A	0.455	0.027	0.916	2e-11
P14105	1959	Myosin-9 OS=Gallus gallus	no	N/A	0.455	0.018	0.888	2e-11
Q258K2	1960	Myosin-9 OS=Canis familia	no	N/A	0.455	0.018	0.888	2e-11

>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 213 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 258

Nonmuscle myosin appears to be responsible for cellularization. Required for morphogenesis and cytokinesis.
Drosophila melanogaster (taxid: 7227)

>sp|Q7Z406|MYH14_HUMAN Myosin-14 OS=Homo sapiens GN=MYH14 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 23  LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
           +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct: 177 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 224

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Homo sapiens (taxid: 9606)

>sp|Q6URW6|MYH14_MOUSE Myosin-14 OS=Mus musculus GN=Myh14 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 23  LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
           +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct: 173 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 220

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Mus musculus (taxid: 10090)

>sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens GN=MYH9 PE=1 SV=4

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/36 (91%), Positives = 35/36 (97%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           + DREDQSILCTGESGAGKTENTKKVIQYLAYVA+S
Sbjct: 162 MQDREDQSILCTGESGAGKTENTKKVIQYLAYVASS 197

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Homo sapiens (taxid: 9606)

>sp|Q61879|MYH10_MOUSE Myosin-10 OS=Mus musculus GN=Myh10 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/36 (91%), Positives = 35/36 (97%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S
Sbjct: 166 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS 201

Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity). Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Mus musculus (taxid: 10090)

>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/36 (91%), Positives = 35/36 (97%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S
Sbjct: 166 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS 201

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2.

Homo sapiens (taxid: 9606)

>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/36 (91%), Positives = 35/36 (97%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S
Sbjct: 166 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS 201

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2.

Bos taurus (taxid: 9913)

>sp|Q63862|MYH11_RAT Myosin-11 (Fragments) OS=Rattus norvegicus GN=Myh11 PE=2 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query: 32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
          L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S
Sbjct: 22 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASS 57

Muscle contraction.

Rattus norvegicus (taxid: 10116)

>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/36 (88%), Positives = 35/36 (97%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           + DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S
Sbjct: 162 MQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS 197

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Gallus gallus (taxid: 9031)

>sp|Q258K2|MYH9_CANFA Myosin-9 OS=Canis familiaris GN=MYH9 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/36 (88%), Positives = 35/36 (97%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           + DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S
Sbjct: 162 MQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS 197

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
312379743	1885	hypothetical protein AND_08308 [Anophele	0.670	0.028	0.867	2e-16
261245147	992	IP15404p [Drosophila melanogaster]	0.582	0.046	0.891	3e-16
261824082	755	LD21871p [Drosophila melanogaster]	0.582	0.060	0.891	4e-16
402534579	1425	LP03737p1 [Drosophila melanogaster]	0.582	0.032	0.891	1e-15
195586613	1771	GD24899 [Drosophila simulans] gi|1941950	0.582	0.025	0.891	2e-15
195353352	1557	GM11766 [Drosophila sechellia] gi|194127	0.582	0.029	0.891	2e-15
1572482	2012	nonmuscle myosin-II heavy chain [Drosoph	0.582	0.022	0.891	3e-15
195426702	2015	GK20720 [Drosophila willistoni] gi|19415	0.582	0.022	0.891	3e-15
24762818	2011	zipper, isoform B [Drosophila melanogast	0.582	0.022	0.891	3e-15
195489897	2011	GE11388 [Drosophila yakuba] gi|194179034	0.582	0.022	0.891	3e-15

>gi|312379743|gb|EFR25924.1| hypothetical protein AND_08308 [Anopheles darlingi]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/53 (86%), Positives = 47/53 (88%)

Query: 24  TGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAP 76
           TG   +V LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS  AP
Sbjct: 111 TGKELKVLLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSVAAP 163

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261245147|gb|ACX54880.1| IP15404p [Drosophila melanogaster]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 214 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 259

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261824082|gb|ACX94162.1| LD21871p [Drosophila melanogaster]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 212 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 257

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|402534579|gb|AFQ62077.1| LP03737p1 [Drosophila melanogaster]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 167 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 212

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195586613|ref|XP_002083068.1| GD24899 [Drosophila simulans] gi|194195077|gb|EDX08653.1| GD24899 [Drosophila simulans]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 167 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 212

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195353352|ref|XP_002043169.1| GM11766 [Drosophila sechellia] gi|194127257|gb|EDW49300.1| GM11766 [Drosophila sechellia]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 167 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 212

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1572482|gb|AAB09050.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 168 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 213

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195426702|ref|XP_002061441.1| GK20720 [Drosophila willistoni] gi|194157526|gb|EDW72427.1| GK20720 [Drosophila willistoni]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 167 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 212

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24762818|ref|NP_726506.1| zipper, isoform B [Drosophila melanogaster] gi|21645103|gb|AAM70805.1| zipper, isoform B [Drosophila melanogaster]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 167 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 212

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195489897|ref|XP_002092933.1| GE11388 [Drosophila yakuba] gi|194179034|gb|EDW92645.1| GE11388 [Drosophila yakuba]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 42/46 (91%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPH 77
           L DREDQSILCTGESGAGKTENTKKVIQ+LAYVAASKPKGS   PH
Sbjct: 167 LGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPH 212

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
UNIPROTKB|Q5BKV1	218	MYH9 "Myosin-9" [Homo sapiens	0.556	0.201	0.8	5.6e-13
UNIPROTKB|F1LNF0	2000	Myh14 "Protein Myh14" [Rattus	0.658	0.026	0.75	2.6e-12
UNIPROTKB|F1LMN2	2032	Myh14 "Protein Myh14" [Rattus	0.658	0.025	0.75	2.6e-12
UNIPROTKB|Q7Z406	1995	MYH14 "Myosin-14" [Homo sapien	0.607	0.024	0.775	3.3e-12
MGI|MGI:1919210	2000	Myh14 "myosin, heavy polypepti	0.607	0.024	0.775	3.3e-12
UNIPROTKB|J9NU82	2003	MYH14 "Uncharacterized protein	0.607	0.023	0.775	3.3e-12
UNIPROTKB|F2Z2U8	2028	MYH14 "Myosin-14" [Homo sapien	0.607	0.023	0.775	3.3e-12
UNIPROTKB|G8JLL9	2036	MYH14 "Myosin-14" [Homo sapien	0.607	0.023	0.775	3.3e-12
UNIPROTKB|F1PYS6	2037	MYH14 "Uncharacterized protein	0.607	0.023	0.775	3.3e-12
UNIPROTKB|F1MM57	2042	MYH14 "Uncharacterized protein	0.607	0.023	0.775	3.4e-12

UNIPROTKB|Q5BKV1 MYH9 "Myosin-9" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 36/45 (80%), Positives = 38/45 (84%)

Query:    32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS-KPKGSSTA 75
             + DREDQSILCTGESGAGKTENTKKVIQYLAYVA+S K K    A
Sbjct:   162 MQDREDQSILCTGESGAGKTENTKKVIQYLAYVASSHKSKKDQEA 206

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1LNF0 Myh14 "Protein Myh14" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 42/56 (75%), Positives = 45/56 (80%)

Query:    16 HIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             HI Y V  T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   169 HI-YAV--TEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 220

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

UNIPROTKB|F1LMN2 Myh14 "Protein Myh14" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 42/56 (75%), Positives = 45/56 (80%)

Query:    16 HIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             HI Y V  T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   169 HI-YAV--TEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 220

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q7Z406 MYH14 "Myosin-14" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   177 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 224

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0007411 "axon guidance" evidence=TAS

MGI|MGI:1919210 Myh14 "myosin, heavy polypeptide 14" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   173 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 220

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001725 "stress fiber" evidence=IDA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0008152 "metabolic process" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0016459 "myosin complex" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|J9NU82 MYH14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   178 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 225

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F2Z2U8 MYH14 "Myosin-14" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   177 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 224

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|G8JLL9 MYH14 "Myosin-14" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   177 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 224

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1PYS6 MYH14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   178 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 225

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1MM57 MYH14 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 38/49 (77%), Positives = 42/49 (85%)

Query:    23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
             +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct:   178 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 225

GO:0051015 "actin filament binding" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8SS35	Y4A0_ENCCU	No assigned EC number	0.65	0.5063	0.0235	yes	N/A
Q7Z406	MYH14_HUMAN	No assigned EC number	0.7755	0.6075	0.0240	yes	N/A
P35580	MYH10_HUMAN	No assigned EC number	0.9166	0.4556	0.0182	no	N/A
Q61879	MYH10_MOUSE	No assigned EC number	0.9166	0.4556	0.0182	no	N/A
Q9USI6	MYO2_SCHPO	No assigned EC number	0.6904	0.5316	0.0275	yes	N/A
Q27991	MYH10_BOVIN	No assigned EC number	0.9166	0.4556	0.0182	no	N/A
Q63862	MYH11_RAT	No assigned EC number	0.9166	0.4556	0.0271	no	N/A
Q99323	MYSN_DROME	No assigned EC number	0.8913	0.5822	0.0223	yes	N/A
P35579	MYH9_HUMAN	No assigned EC number	0.9166	0.4556	0.0183	no	N/A
Q6URW6	MYH14_MOUSE	No assigned EC number	0.7755	0.6075	0.024	yes	N/A
P08964	MYO1_YEAST	No assigned EC number	0.6382	0.5696	0.0233	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	1e-25
smart00242	677	smart00242, MYSc, Myosin	3e-19
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	4e-18
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	8e-16
cd00124	679	cd00124, MYSc, Myosin motor domain	3e-14
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	2e-10
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	5e-10
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	6e-09
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	9e-08
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	3e-07
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	4e-07
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	2e-06
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	4e-06
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	9e-06
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	2e-05
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	3e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.004

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score = 97.7 bits (244), Expect = 1e-25
 Identities = 33/47 (70%), Positives = 35/47 (74%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHS 78
           L DRE+QSIL TGESGAGKTENTKKVIQYLA VAAS  K   +    
Sbjct: 86  LQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQ 132

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score = 79.5 bits (197), Expect = 3e-19
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L+D+E+QSI+ +GESGAGKTENTKK++QYLA V+ S  +  S
Sbjct: 87  LNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTEVGS 128

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score = 76.2 bits (188), Expect = 4e-18
 Identities = 25/43 (58%), Positives = 32/43 (74%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           L D+E+Q I+ +GESGAGKTENTKK++QYLA V+ S P     
Sbjct: 80  LRDKENQCIVISGESGAGKTENTKKLMQYLASVSGSTPSAVGP 122

Length = 679

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 69.7 bits (171), Expect = 8e-16
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           LS++E+Q+I+ +GESGAGKTEN K+++QYLA V +S     S
Sbjct: 147 LSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEIS 188

Length = 1463

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 23/36 (63%), Positives = 30/36 (83%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           L DR +QSI+ +GESGAGKTENTK +++YLA +A S
Sbjct: 81  LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGS 116

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 28  DQVY---LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70
           D  Y    S+ E+Q ++ +GESGAGKTE  KK++QY+A V+    K
Sbjct: 74  DNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQK 119

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score = 53.5 bits (129), Expect = 5e-10
 Identities = 19/37 (51%), Positives = 29/37 (78%)

Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA 65
           +  +++ + QSIL +GESGAGKTE TK +++YLAY+ 
Sbjct: 80  RAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMG 116

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score = 50.1 bits (120), Expect = 6e-09
 Identities = 17/28 (60%), Positives = 25/28 (89%)

Query: 35  REDQSILCTGESGAGKTENTKKVIQYLA 62
           +++Q I+ +GESGAGKTE+TK ++QYLA
Sbjct: 84  KKNQCIIISGESGAGKTESTKLILQYLA 111

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score = 46.7 bits (111), Expect = 9e-08
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 35  REDQSILCTGESGAGKTENTKKVIQYLAY 63
           +  QSI+ +GESGAGKTENTK V++YL  
Sbjct: 89  KMSQSIIVSGESGAGKTENTKFVLRYLTE 117

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 38  QSILCTGESGAGKTENTKKVIQYLAY 63
           Q+I+ +GESGAGKTE TK++++Y A 
Sbjct: 184 QTIIVSGESGAGKTEATKQIMRYFAS 209

Length = 821

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 34  DREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           D ++QSI+ +GESGAGKT + K +++Y A V  S  +  S  
Sbjct: 83  DEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSET 124

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 34  DREDQSILCTGESGAGKTENTKKVIQYLA 62
           D  +QSI+ +GESGAGKTE  K  +QYLA
Sbjct: 89  DEVNQSIIISGESGAGKTETAKIAMQYLA 117

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           L  R DQSI+  G SGAGKT + K  ++YLA  A S
Sbjct: 81  LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGS 116

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
           L  +++Q ++ +GESG+GKTE TK +++YL   AA    GS
Sbjct: 82  LDAKQNQCVIISGESGSGKTEATKLILRYL---AAMNQGGS 119

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV 64
           Q  ++  +DQ I+ +GESG+GKTE+   ++Q L  +
Sbjct: 78  QSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVL 113

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           L  + +Q I+ +GESG+GKTE+T  +I +L  ++     GS  
Sbjct: 89  LRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGV 131

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 44 GESGAGKTENTKKVIQYLAYVAASKPKGS 72
          GESG+GK+     ++  L   AA+ P GS
Sbjct: 43 GESGSGKSVTALSILGLLPSPAAAHPSGS 71

Length = 534

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG0161|consensus	1930		99.79
COG5022	1463	Myosin heavy chain [Cytoskeleton]	99.76
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	99.75
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	99.75
PTZ00014	821	myosin-A; Provisional	99.74
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	99.74
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	99.73
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	99.73
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	99.73
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	99.73
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	99.72
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	99.72
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	99.72
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	99.71
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	99.71
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	99.7
KOG0162|consensus	1106		99.67
KOG0164|consensus	1001		99.67
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	99.62
KOG0163|consensus	1259		99.49
KOG0160|consensus	862		99.37
KOG4229|consensus	1062		99.3
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.12
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.04
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.04
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.96
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	96.92
smart00382	148	AAA ATPases associated with a variety of cellular	96.72
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.72
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.72
PF00004	132	AAA: ATPase family associated with various cellula	96.63
PRK00300	205	gmk guanylate kinase; Provisional	96.61
PRK05480	209	uridine/cytidine kinase; Provisional	96.53
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.45
PRK05541	176	adenylylsulfate kinase; Provisional	96.44
PF05729	166	NACHT: NACHT domain	96.44
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.44
PRK00131	175	aroK shikimate kinase; Reviewed	96.43
PRK06762	166	hypothetical protein; Provisional	96.42
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.41
PRK07261	171	topology modulation protein; Provisional	96.37
PRK08233	182	hypothetical protein; Provisional	96.34
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.34
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.33
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	96.28
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.28
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.26
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.25
PRK08118	167	topology modulation protein; Reviewed	96.23
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.23
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.22
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.18
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.18
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.18
PRK06696	223	uridine kinase; Validated	96.17
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.17
PF12846	304	AAA_10: AAA-like domain	96.17
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.14
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.11
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	96.1
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.09
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.06
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.05
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.04
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.03
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	95.99
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.98
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.98
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	95.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.94
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.93
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.93
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.88
PRK00889	175	adenylylsulfate kinase; Provisional	95.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.88
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.88
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.88
PRK06217	183	hypothetical protein; Validated	95.87
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.85
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.82
PRK06547	172	hypothetical protein; Provisional	95.81
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.81
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.79
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	95.79
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.79
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.77
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.77
KOG0925|consensus	699		95.77
PTZ00301	210	uridine kinase; Provisional	95.76
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.76
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.73
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.72
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.71
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.71
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	95.71
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.71
PRK03846	198	adenylylsulfate kinase; Provisional	95.7
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.7
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.69
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.68
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	95.67
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.67
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.66
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.66
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.66
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.64
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.64
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.63
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.62
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	95.62
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	95.61
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.61
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.61
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.6
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.6
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.59
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.59
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.58
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.58
PRK10908	222	cell division protein FtsE; Provisional	95.56
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	95.56
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.55
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	95.54
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	95.53
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.53
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.53
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.52
PRK12402	337	replication factor C small subunit 2; Reviewed	95.5
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.5
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.49
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.49
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.49
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.48
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.48
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.47
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.47
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.47
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.47
PRK05707	328	DNA polymerase III subunit delta'; Validated	95.47
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	95.47
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.46
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.46
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	95.45
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.44
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.44
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.44
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.44
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.43
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.43
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.43
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.42
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	95.42
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.41
PRK14737	186	gmk guanylate kinase; Provisional	95.41
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.41
PRK09825	176	idnK D-gluconate kinase; Provisional	95.4
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.4
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.39
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.38
PRK08084	235	DNA replication initiation factor; Provisional	95.38
PRK14531	183	adenylate kinase; Provisional	95.38
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.38
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.38
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	95.38
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.37
PRK14527	191	adenylate kinase; Provisional	95.35
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.35
PHA02530	300	pseT polynucleotide kinase; Provisional	95.34
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.34
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.34
PRK04182	180	cytidylate kinase; Provisional	95.34
PRK04040	188	adenylate kinase; Provisional	95.32
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.32
PRK14738	206	gmk guanylate kinase; Provisional	95.32
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.31
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.31
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.31
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.3
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	95.3
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.29
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.29
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.29
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.28
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.27
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.26
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.26
PRK13342	413	recombination factor protein RarA; Reviewed	95.25
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	95.25
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.24
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.24
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.24
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	95.24
PRK05057	172	aroK shikimate kinase I; Reviewed	95.23
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.23
PRK13851	344	type IV secretion system protein VirB11; Provision	95.23
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.23
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.22
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.22
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	95.22
COG1660	286	Predicted P-loop-containing kinase [General functi	95.21
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.2
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.2
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.2
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.19
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.19
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.18
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.18
PRK03839	180	putative kinase; Provisional	95.18
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.18
cd03246	173	ABCC_Protease_Secretion This family represents the	95.18
PRK07993	334	DNA polymerase III subunit delta'; Validated	95.18
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.17
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.17
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	95.17
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	95.17
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.16
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.16
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.15
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.15
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.15
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	95.15
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.14
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.14
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.13
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.13
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.12
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.11
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.11
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.1
PRK08699	325	DNA polymerase III subunit delta'; Validated	95.1
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	95.1
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.1
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.09
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	95.09
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.09
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	95.09
PRK08727	233	hypothetical protein; Validated	95.09
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.09
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.08
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.08
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.08
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	95.05
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.05
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	95.05
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	95.05
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.02
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.02
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.02
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.02
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.01
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.01
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	94.99
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	94.99
PRK06893	229	DNA replication initiation factor; Validated	94.99
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.98
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	94.98
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	94.98
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.98
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	94.96
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	94.96
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	94.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	94.96
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	94.96
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.95
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	94.95
KOG0924|consensus	1042		94.94
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	94.94
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.94
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	94.94
PRK13764	602	ATPase; Provisional	94.93
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.93
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	94.93
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	94.92
TIGR02533	486	type_II_gspE general secretory pathway protein E.	94.92
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.92
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	94.92
PRK07667	193	uridine kinase; Provisional	94.91
PRK09112	351	DNA polymerase III subunit delta'; Validated	94.91
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	94.91
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	94.91
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.9
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	94.9
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	94.9
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	94.89
PRK00698	205	tmk thymidylate kinase; Validated	94.88
COG0630	312	VirB11 Type IV secretory pathway, VirB11 component	94.88
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	94.87
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	94.86
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	94.86
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	94.84
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	94.84
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	94.84
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	94.83
PRK09984	262	phosphonate/organophosphate ester transporter subu	94.83
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.83
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	94.82
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	94.82
PRK10522	547	multidrug transporter membrane component/ATP-bindi	94.81
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	94.81
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	94.81
COG1123	539	ATPase components of various ABC-type transport sy	94.8
COG4172	534	ABC-type uncharacterized transport system, duplica	94.8
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	94.8
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	94.79
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	94.79
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	94.78
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	94.77
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	94.77
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	94.76
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	94.76
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	94.76
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	94.76
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	94.75
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	94.75
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	94.74
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	94.73
cd03115	173	SRP The signal recognition particle (SRP) mediates	94.73
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.72
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	94.71
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	94.71
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	94.7
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	94.7
PF13479	213	AAA_24: AAA domain	94.7
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	94.69
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	94.69
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.69
PRK03695	248	vitamin B12-transporter ATPase; Provisional	94.69
PLN02165	334	adenylate isopentenyltransferase	94.68
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	94.68
PRK13695	174	putative NTPase; Provisional	94.67
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.67
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.65
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	94.64
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	94.64
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.64
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	94.62
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	94.62
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	94.62
PLN03025	319	replication factor C subunit; Provisional	94.6
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	94.59
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	94.59
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	94.58
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	94.58
PRK14530	215	adenylate kinase; Provisional	94.58
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	94.58
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	94.58
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	94.57
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	94.57
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	94.54
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	94.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.53
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	94.53
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	94.52
COG1123	539	ATPase components of various ABC-type transport sy	94.52
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	94.51
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	94.5
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	94.48
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	94.48
COG0802	149	Predicted ATPase or kinase [General function predi	94.48
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	94.47
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.47
PRK12608	380	transcription termination factor Rho; Provisional	94.46
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	94.46
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	94.45
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	94.45
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	94.45
PRK10938	490	putative molybdenum transport ATP-binding protein	94.44
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	94.43
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	94.43
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	94.43
PRK14528	186	adenylate kinase; Provisional	94.42
KOG0922|consensus	674		94.42
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	94.42
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	94.41
PRK13546	264	teichoic acids export protein ATP-binding subunit;	94.41
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	94.4
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	94.38
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	94.37
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	94.37
PRK10261	623	glutathione transporter ATP-binding protein; Provi	94.37
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	94.36
PRK08356	195	hypothetical protein; Provisional	94.36
PRK15453	290	phosphoribulokinase; Provisional	94.35
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.35
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	94.34
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	94.34
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	94.33
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.33
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.32
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	94.31
PRK09087	226	hypothetical protein; Validated	94.3
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	94.3
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	94.3
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	94.29
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	94.29
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	94.29
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	94.29
PRK10646	153	ADP-binding protein; Provisional	94.28
PRK03731	171	aroL shikimate kinase II; Reviewed	94.28
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	94.28
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.28
PRK06761	282	hypothetical protein; Provisional	94.27
PHA02544	316	44 clamp loader, small subunit; Provisional	94.27
PRK13947	171	shikimate kinase; Provisional	94.25
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	94.25
PLN02348	395	phosphoribulokinase	94.24
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	94.24
PRK10261	623	glutathione transporter ATP-binding protein; Provi	94.24
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	94.23
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	94.23
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.22
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	94.22
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	94.22
PRK02496	184	adk adenylate kinase; Provisional	94.22
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	94.21
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.2
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	94.2
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	94.18
cd03299	235	ABC_ModC_like Archeal protein closely related to M	94.18
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	94.16
PHA00729	226	NTP-binding motif containing protein	94.16
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	94.16
PF13173	128	AAA_14: AAA domain	94.14
PF07475	171	Hpr_kinase_C: HPr Serine kinase C-terminal domain;	94.14
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	94.14
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	94.12
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	94.11
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	94.09
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	94.07
PRK14532	188	adenylate kinase; Provisional	94.07
PRK04220	301	2-phosphoglycerate kinase; Provisional	94.07
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	94.05
COG4172	534	ABC-type uncharacterized transport system, duplica	94.05
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	94.05
cd03116	159	MobB Molybdenum is an essential trace element in t	94.05
PRK13946	184	shikimate kinase; Provisional	94.04
PRK06871	325	DNA polymerase III subunit delta'; Validated	94.02
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	94.02
COG4619	223	ABC-type uncharacterized transport system, ATPase	94.01
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	94.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	94.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	93.99
cd01128	249	rho_factor Transcription termination factor rho is	93.98
TIGR00101	199	ureG urease accessory protein UreG. This model rep	93.97
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	93.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	93.96
PF13245	76	AAA_19: Part of AAA domain	93.95
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	93.95
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	93.94
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	93.94
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.93
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	93.92
PRK13537	306	nodulation ABC transporter NodI; Provisional	93.91
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	93.9
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	93.9
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	93.89
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	93.89
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	93.88
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	93.87
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	93.85
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	93.85
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	93.85
TIGR02237	209	recomb_radB DNA repair and recombination protein R	93.84
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.83
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	93.81
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.81
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.8
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.79
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	93.77
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	93.77
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	93.76
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.74
PLN02200	234	adenylate kinase family protein	93.73
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	93.72
PRK13975	196	thymidylate kinase; Provisional	93.72
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	93.72
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	93.72
PRK13949	169	shikimate kinase; Provisional	93.71
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	93.7
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	93.69
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	93.69
COG1855	604	ATPase (PilT family) [General function prediction	93.69
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	93.66
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	93.64
PRK00279	215	adk adenylate kinase; Reviewed	93.63
PRK12377	248	putative replication protein; Provisional	93.61
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	93.59
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	93.59
COG2884	223	FtsE Predicted ATPase involved in cell division [C	93.57
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	93.56
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	93.56
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	93.56
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	93.55

>KOG0161|consensus

Probab=99.79  E-value=4.1e-20  Score=156.53  Aligned_cols=64  Identities=55%  Similarity=0.616  Sum_probs=59.9

Q ss_pred             chhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          2 STRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         2 ~~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +++.+|+.++  ..||||   |+|||+||++|+.+++||||+|+||||||||+++|++++||+.++++.
T Consensus       134 ~v~~~ykgkrr~e~pPHI---favad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~  199 (1930)
T KOG0161|consen  134 SVVRMYKGKKREEMPPHI---FAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSS  199 (1930)
T ss_pred             HHHHHhcccccccCCchH---HHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhcc
Confidence            4678999874  589999   999999999999999999999999999999999999999999999876

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=99.76  E-value=5.9e-19  Score=146.09  Aligned_cols=64  Identities=38%  Similarity=0.558  Sum_probs=58.1

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP   69 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~   69 (79)
                      .++.|+.+.  ..+|||   ||||+.||++|+..++||||||+|||||||||++|++|+||+.+.++..
T Consensus       119 ~i~~Y~~K~r~el~PHv---fAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~  184 (1463)
T COG5022         119 IIQSYSGKNRLELEPHV---FAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSST  184 (1463)
T ss_pred             HHHHhccCccccCCchH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc
Confidence            467788665  478999   9999999999999999999999999999999999999999999886654

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=99.75  E-value=9.8e-19  Score=138.26  Aligned_cols=63  Identities=56%  Similarity=0.638  Sum_probs=56.7

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP   69 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~   69 (79)
                      +..|+...  ..||||   |++|++||+.|+..+++|||||+|||||||||++|.+|+||+.+++...
T Consensus        59 ~~~Y~~~~~~~~~PHi---yaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~  123 (693)
T cd01377          59 VEMYRGKKREEMPPHI---FAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSK  123 (693)
T ss_pred             HHHhcCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCC
Confidence            45677644  579999   9999999999999999999999999999999999999999999986653

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=99.75  E-value=1.1e-18  Score=137.86  Aligned_cols=62  Identities=34%  Similarity=0.457  Sum_probs=57.0

Q ss_pred             hhhhhhcccCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          3 TRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         3 ~~~~y~~~~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      .+..|+.....||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++
T Consensus        61 ~~~~y~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~  122 (677)
T cd01383          61 YIEAYRKKSNDSPHV---YAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG  122 (677)
T ss_pred             HHHHhhCCCCCCCCH---HHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC
Confidence            356788777889999   99999999999999999999999999999999999999999988743

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>PTZ00014 myosin-A; Provisional

Probab=99.74  E-value=1.3e-18  Score=139.62  Aligned_cols=60  Identities=28%  Similarity=0.376  Sum_probs=54.6

Q ss_pred             hhhhhcc---cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856          4 RSAYQVY---LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus         4 ~~~y~~~---~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +.+|+..   ...||||   |++|++||++|+..++||||||+|||||||||++|++|+||+..++
T Consensus       150 ~~~Y~~~~~~~~lpPHi---favA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~  212 (821)
T PTZ00014        150 IRRYRDAKDSDKLPPHV---FTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKS  212 (821)
T ss_pred             HHHHhCCCCcCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcc
Confidence            5678764   3479999   9999999999999999999999999999999999999999998764

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=99.74  E-value=1.4e-18  Score=137.28  Aligned_cols=62  Identities=35%  Similarity=0.475  Sum_probs=55.5

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+...  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus        54 ~~~y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~  117 (691)
T cd01380          54 IQAYSGQRKGELDPHI---FAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSD  117 (691)
T ss_pred             HHHhCCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCC
Confidence            45566543  479999   999999999999999999999999999999999999999999988654

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=99.73  E-value=2.4e-18  Score=136.06  Aligned_cols=61  Identities=28%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             hhhhhccc---CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          4 RSAYQVYL---IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         4 ~~~y~~~~---~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      +..|+...   ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++..
T Consensus        61 ~~~Y~~~~~~~~lpPHi---y~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~  124 (692)
T cd01385          61 VRLYENQQRLGKLPPHI---FAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQK  124 (692)
T ss_pred             HHHHhcCCCcCCCCCCH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccC
Confidence            45676543   579999   99999999999999999999999999999999999999999988743

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=99.73  E-value=2.6e-18  Score=135.55  Aligned_cols=61  Identities=33%  Similarity=0.477  Sum_probs=55.0

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      +..|+...  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.+++.
T Consensus        54 ~~~y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~  116 (671)
T cd01381          54 IKLYKNKSIGELPPHI---FAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGK  116 (671)
T ss_pred             HHHHhcCCccccCCCH---HHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCC
Confidence            45676543  579999   99999999999999999999999999999999999999999988754

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=99.73  E-value=2.6e-18  Score=137.14  Aligned_cols=62  Identities=37%  Similarity=0.460  Sum_probs=55.6

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+...  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+|+||+.+++..
T Consensus        54 ~~~y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~  117 (767)
T cd01386          54 PSMFRGCKAEDMPPHI---YSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSV  117 (767)
T ss_pred             HHHHhcCCcCCCCCCH---HHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCC
Confidence            45677554  579999   999999999999999999999999999999999999999999887543

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=99.73  E-value=2.7e-18  Score=135.43  Aligned_cols=62  Identities=35%  Similarity=0.480  Sum_probs=55.9

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+.+.  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus        54 ~~~Y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~  117 (674)
T cd01378          54 IELYKGKSRYELPPHI---YALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGG  117 (674)
T ss_pred             HHHHhCCCCCCCCCCH---HHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCC
Confidence            45677654  479999   999999999999999999999999999999999999999999887654

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.72  E-value=2.5e-18  Score=134.84  Aligned_cols=63  Identities=33%  Similarity=0.480  Sum_probs=56.1

Q ss_pred             hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856          4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP   69 (79)
Q Consensus         4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~   69 (79)
                      +..|+..  ...||||   |++|++||+.|+..++||||||+|||||||||++|++++||+.++.+..
T Consensus        53 ~~~y~~~~~~~~~PHi---f~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~  117 (689)
T PF00063_consen   53 MEKYRGKRRQDLPPHI---FAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSS  117 (689)
T ss_dssp             HHHHTTS-GGGS-SSH---HHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSS
T ss_pred             hhhhhhhccccccCcc---chhhhcccccccccccccceeeccccccccccchHHHHHHHhhhccccc
Confidence            4567654  4689999   9999999999999999999999999999999999999999999987665

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=99.72  E-value=4.3e-18  Score=134.39  Aligned_cols=62  Identities=34%  Similarity=0.544  Sum_probs=55.3

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+...  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.+++..
T Consensus        56 ~~~y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~  119 (674)
T cd01384          56 MEQYKGAALGELSPHV---FAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRA  119 (674)
T ss_pred             HHHhcCCCcCCCCCCH---HHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCC
Confidence            45666543  479999   999999999999999999999999999999999999999999987543

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd00124 MYSc Myosin motor domain

Probab=99.72  E-value=5e-18  Score=133.74  Aligned_cols=61  Identities=41%  Similarity=0.544  Sum_probs=55.0

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      +..|+...  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++
T Consensus        54 ~~~y~~~~~~~~pPHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~  116 (679)
T cd00124          54 IRKYRGKSRSELPPHV---FAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGS  116 (679)
T ss_pred             HHHHhcCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCC
Confidence            45666543  579999   99999999999999999999999999999999999999999988764

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=99.71  E-value=7.8e-18  Score=133.61  Aligned_cols=61  Identities=36%  Similarity=0.390  Sum_probs=54.3

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      +..|+...  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+..+++
T Consensus        59 ~~~y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~  121 (717)
T cd01382          59 IKKYQGKSLGTLPPHV---FAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGS  121 (717)
T ss_pred             HHHhhCCCcCcCCCcH---HHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccC
Confidence            45666543  478999   99999999999999999999999999999999999999999987643

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>smart00242 MYSc Myosin

Probab=99.71  E-value=8.8e-18  Score=132.45  Aligned_cols=62  Identities=44%  Similarity=0.584  Sum_probs=55.6

Q ss_pred             hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+..  ...||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus        60 ~~~y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~  123 (677)
T smart00242       60 IKKYRGKSRGELPPHV---FAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSN  123 (677)
T ss_pred             HHHccCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCC
Confidence            4556654  3579999   999999999999999999999999999999999999999999988654

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=99.70  E-value=1e-17  Score=132.29  Aligned_cols=60  Identities=28%  Similarity=0.405  Sum_probs=53.6

Q ss_pred             hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856          4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus         4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..|+..  ...||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++.
T Consensus        55 ~~~Y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~  116 (677)
T cd01387          55 VQQYAGRALGENPPHL---FAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQ  116 (677)
T ss_pred             HHHhcCCCCCCCCCCH---HHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcC
Confidence            4556543  3479999   9999999999999999999999999999999999999999998764

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>KOG0162|consensus

Probab=99.67  E-value=3.5e-17  Score=130.30  Aligned_cols=63  Identities=32%  Similarity=0.426  Sum_probs=57.1

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      ....||...  ..||||   ||+||+.|++|...++||||||+||||+|||+++|++|+|++.+++.+
T Consensus        71 ~~~~YqG~~q~E~pPHi---yAladnmY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g  135 (1106)
T KOG0162|consen   71 EMELYQGAAQYENPPHI---YALADNMYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGG  135 (1106)
T ss_pred             HHHHhhchhhccCCchh---hhhHHHHHHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCC
Confidence            467888654  578999   999999999999999999999999999999999999999999988444

>KOG0164|consensus

Probab=99.67  E-value=4.7e-17  Score=129.21  Aligned_cols=63  Identities=32%  Similarity=0.432  Sum_probs=56.3

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      ++..|+.+.  ..|||+   |||||.||+.|.+..+||||+|+|||||||||+.|++|+|++.+...+
T Consensus        61 ti~kYkgre~yE~~PHl---fAiad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~  125 (1001)
T KOG0164|consen   61 TIEKYKGREFYERPPHL---FAIADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNAS  125 (1001)
T ss_pred             HHHHhCCeeecccCchH---HHhHHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCcc
Confidence            456677655  478999   999999999999999999999999999999999999999999887544

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=99.62  E-value=4.3e-16  Score=122.77  Aligned_cols=60  Identities=28%  Similarity=0.400  Sum_probs=53.4

Q ss_pred             hhhhhcc--cCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856          4 RSAYQVY--LIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus         4 ~~~y~~~--~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..|+..  ...||||   |++|+.||+.|+..+++|||+|+|||||||||++|++++||+.++.
T Consensus        54 ~~~y~~~~~~~~~PHi---favA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~  115 (653)
T cd01379          54 SRLYTGQKRSSNPPHI---FAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGK  115 (653)
T ss_pred             HHhhcCCCCCCCCCcH---HHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcC
Confidence            4566643  3469999   9999999999999999999999999999999999999999998754

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>KOG0163|consensus

Probab=99.49  E-value=2.1e-14  Score=115.13  Aligned_cols=61  Identities=33%  Similarity=0.372  Sum_probs=54.5

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      +..|+.+.  ..||||   |+|||.|||.|..-+.+|+||++||||+||||+.|.+++|||.--++
T Consensus       112 IK~Y~GkSLGq~~PHv---FAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gs  174 (1259)
T KOG0163|consen  112 IKEYRGKSLGQLPPHV---FAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGS  174 (1259)
T ss_pred             HHHhcCCcccCCCCce---eeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCC
Confidence            45677654  479999   99999999999999999999999999999999999999999976544

>KOG0160|consensus

Probab=99.37  E-value=4.5e-13  Score=108.20  Aligned_cols=61  Identities=39%  Similarity=0.496  Sum_probs=55.3

Q ss_pred             hhhhh-cccCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          4 RSAYQ-VYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         4 ~~~y~-~~~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      ++.|+ ......||+   |++|+.||++|.....+|+|+++||||||||+++|.+++||+.+.++
T Consensus        63 i~~y~~~~~~l~ph~---favA~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~  124 (862)
T KOG0160|consen   63 ISAYQAIQGELSPHL---FAVAEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS  124 (862)
T ss_pred             HHhhcccccccCcch---hhHHHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence            34566 344678999   99999999999999999999999999999999999999999999877

>KOG4229|consensus

Probab=99.30  E-value=2.5e-12  Score=105.72  Aligned_cols=51  Identities=39%  Similarity=0.546  Sum_probs=49.3

Q ss_pred             CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         12 IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        12 ~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..||||   |++|+.+|++|+....+|||+|+||||+|||+.+++++++|+.++
T Consensus       126 e~~phi---fa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Ls  176 (1062)
T KOG4229|consen  126 EDPPHI---FAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILS  176 (1062)
T ss_pred             CCCcch---hhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHh
Confidence            467899   999999999999999999999999999999999999999999999

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.12  E-value=0.00027  Score=43.49  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.8

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998864

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.04  E-value=0.00093  Score=40.54  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=25.9

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.......++|.|++|+|||..++.+.+.+.
T Consensus        14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          14 LELPPPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             HhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            3344567899999999999999999998775

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.04  E-value=0.00032  Score=43.45  Aligned_cols=29  Identities=24%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +...+++|.|++|+|||..++.+++-+..
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            35678999999999999999999987754

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.96  E-value=0.00047  Score=44.78  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ........++|.|++|+|||...+.++..+...
T Consensus        19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            345667889999999999999999988887655

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=96.92  E-value=0.0006  Score=46.04  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhh
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTK   55 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k   55 (79)
                      |.....++..++. ..|+||+..|++|+|||++..
T Consensus         9 f~~~~~~v~~~~~-G~n~~i~~yG~tGsGKT~Tm~   42 (186)
T cd01363           9 FRDVGPLLQSALD-GYNVCIFAYGQTGSGKTYTME   42 (186)
T ss_pred             HHHHHHHHHHHhC-CcceeEEEECCCCCcceEecC
Confidence            8888888888885 599999999999999998774

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.72  E-value=0.00098  Score=39.86  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=23.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.++|.|.+|+|||+.++.+...+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4679999999999999999988776543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.72  E-value=0.001  Score=43.87  Aligned_cols=25  Identities=36%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.|+|+|.||||||+..+.+...+.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999998877653

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.72  E-value=0.00086  Score=41.02  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|+|-+|+|||+.++.+.+.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998875

...

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.63  E-value=0.0012  Score=40.55  Aligned_cols=23  Identities=43%  Similarity=0.696  Sum_probs=21.0

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|.|.+|+|||+.++.+.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999998873

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.61  E-value=0.0014  Score=44.00  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.|+|.|.||||||+.++.+.+.+-
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            567899999999999999999998763

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.53  E-value=0.0019  Score=43.78  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+...|.|+|.||||||+.++.+.+.|
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            355678999999999999999999887

>TIGR00235 udk uridine kinase

Probab=96.45  E-value=0.0021  Score=43.72  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+...|.|+|.||||||+.++.+...+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3556788999999999999999987764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.44  E-value=0.0021  Score=42.38  Aligned_cols=28  Identities=32%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+...|+|.|.+|||||+.++.+.+.|.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4556899999999999999999988775

>PF05729 NACHT: NACHT domain

Probab=96.44  E-value=0.0023  Score=40.52  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      -++|+|+.|+|||+.++.++..|....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            478999999999999999998887654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.44  E-value=0.0021  Score=37.02  Aligned_cols=22  Identities=45%  Similarity=0.620  Sum_probs=20.4

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|+|.+|+|||+.++.+.+.|
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999999887

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.43  E-value=0.0025  Score=41.09  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +...|+|+|.+|||||+.++.+-+.|
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999887765

>PRK06762 hypothetical protein; Provisional

Probab=96.42  E-value=0.0023  Score=41.69  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=21.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|+|.+|||||+.++.+.+.+
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998876

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.41  E-value=0.0027  Score=42.73  Aligned_cols=28  Identities=32%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      -.|+|+|.||||||+.++.+.+.|-..+
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g   30 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARG   30 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999998887543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK07261 topology modulation protein; Provisional

Probab=96.37  E-value=0.0023  Score=42.71  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|.+|+|||+.++.+.+.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            58999999999999999987654

>PRK08233 hypothetical protein; Provisional

Probab=96.34  E-value=0.0019  Score=42.10  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..|.|+|.+|||||+.++.+...|.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4688999999999999999998874

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.34  E-value=0.0053  Score=41.49  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=27.0

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.+........|+|.|++|+|||..++.+.+++.
T Consensus        30 ~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~   63 (226)
T TIGR03420        30 RQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE   63 (226)
T ss_pred             HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3333356678899999999999999999887654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.33  E-value=0.0046  Score=43.92  Aligned_cols=30  Identities=23%  Similarity=0.137  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+.+|.|.|++|+|||...+.+.+.|-..
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            578899999999999999999998887644

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.28  E-value=0.0023  Score=47.53  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=25.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++.+.+-|.||||||||..++-++..|-
T Consensus        29 ~~GE~lgiVGESGsGKS~~~~aim~llp   56 (316)
T COG0444          29 KKGEILGIVGESGSGKSVLAKAIMGLLP   56 (316)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence            5678899999999999999999999886

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.28  E-value=0.0032  Score=41.70  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.|+++|-+|||||+.++.+.+-+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999887654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.26  E-value=0.0045  Score=42.90  Aligned_cols=28  Identities=39%  Similarity=0.578  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....++|.|++|+|||+.++.+...+.
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3355789999999999999999887654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.25  E-value=0.0027  Score=42.63  Aligned_cols=22  Identities=41%  Similarity=0.590  Sum_probs=20.2

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |.|+|.+|||||+.++.+...|
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999998876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08118 topology modulation protein; Reviewed

Probab=96.23  E-value=0.0031  Score=42.04  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +-|+|.|.+|||||+.++.+.+.+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999988765

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.23  E-value=0.0028  Score=42.63  Aligned_cols=23  Identities=52%  Similarity=0.651  Sum_probs=20.7

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|+|+.|.|||+..+.+++.|.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhh
Confidence            79999999999999999999885

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.22  E-value=0.0047  Score=41.47  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|.|++|||||+..+.++.++.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            356799999999999999999887764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.18  E-value=0.0033  Score=42.80  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=22.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .|+|+|.+|||||+..+.++.++..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4799999999999999999888763

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.18  E-value=0.0027  Score=42.76  Aligned_cols=24  Identities=42%  Similarity=0.493  Sum_probs=21.6

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |-|+|.||||||+.++.+...|-.
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCc
Confidence            789999999999999999988863

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.18  E-value=0.0071  Score=41.82  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=26.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .....|.|.|.+|||||+.++.+...|...+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~   61 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG   61 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence            5677889999999999999999998876544

>PRK06696 uridine kinase; Validated

Probab=96.17  E-value=0.0053  Score=42.29  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....-|.|+|.||||||+.++.+.+.|.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34566789999999999999999998884

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.17  E-value=0.0021  Score=49.11  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||||||+..+.++.++....
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~  389 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQ  389 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            6889999999999999999999998776443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PF12846 AAA_10: AAA-like domain

Probab=96.17  E-value=0.0038  Score=43.05  Aligned_cols=29  Identities=28%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      |..++|.|.+|+|||...+.++..+...+
T Consensus         1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g   29 (304)
T PF12846_consen    1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG   29 (304)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence            45678999999999999999988777554

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.14  E-value=0.0037  Score=39.72  Aligned_cols=24  Identities=42%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      ...+.++|.|+||+|||++++.++
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            346789999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.11  E-value=0.0043  Score=40.74  Aligned_cols=28  Identities=32%  Similarity=0.408  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....|+|.|+.|+|||+.+|.+++.|-
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4567899999999999999999999874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=96.10  E-value=0.0072  Score=43.77  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .......+++|+|++|+|||..++.+++.+..
T Consensus        35 ~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~   66 (365)
T TIGR02928        35 LRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE   66 (365)
T ss_pred             HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            33566789999999999999999999987754

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.09  E-value=0.0036  Score=38.72  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             EEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      |+|.|++|.|||..++.+++.|....
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~   26 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHI   26 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            67899999999999999998888654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.06  E-value=0.0032  Score=41.31  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +-|+|.|.+|+|||+.++.+.+.+.
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            5689999999999999999988653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.05  E-value=0.0041  Score=41.61  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .+..|+|+|+||+|||+.+..+++
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~   36 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIK   36 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            367899999999999999877665

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.04  E-value=0.0041  Score=39.04  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|+|.+|||||+.++.+...+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999888765

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.03  E-value=0.0081  Score=42.93  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++.++.. ..-.|+|+|++|||||+..+.++.++..
T Consensus        72 l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          72 FRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             HHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            4444432 3346899999999999999999888753

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.00  E-value=0.0032  Score=43.19  Aligned_cols=31  Identities=19%  Similarity=0.161  Sum_probs=26.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+.+.|.|++|||||+..+.+...+...+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~   59 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTS   59 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            5788999999999999999999887665433

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=95.99  E-value=0.0034  Score=48.41  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.|.+.|.|+||+|||+..+.++..+...+
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~  397 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDE  397 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence            5789999999999999999999998776544

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.98  E-value=0.0038  Score=41.80  Aligned_cols=24  Identities=29%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.|+|.|.||+|||+..+.+...+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            578999999999999999987654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.98  E-value=0.0033  Score=39.47  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=19.5

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+++|.+|||||+.++.+.+.+
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            7899999999999999988554

...

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=95.97  E-value=0.0041  Score=40.14  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+.|
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999887654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.94  E-value=0.0038  Score=39.10  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             cCCCEEEEEccCCCccccceeeecccccc
Confidence            35678999999999999999988765543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.94  E-value=0.0033  Score=42.51  Aligned_cols=28  Identities=39%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678999999999999999999887654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.94  E-value=0.0085  Score=44.42  Aligned_cols=31  Identities=29%  Similarity=0.468  Sum_probs=24.9

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .++..+  ..|+|+|..|||||+..+.++.++.
T Consensus       139 ~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        139 SAIDSR--LNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             HHHHcC--CeEEEECCCCCCHHHHHHHHHHHHh
Confidence            344444  4599999999999999999998875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.93  E-value=0.0035  Score=42.49  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~   56 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP   56 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence            46789999999999999999998876643

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.93  E-value=0.0029  Score=43.06  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+.-.+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.92  E-value=0.004  Score=42.71  Aligned_cols=31  Identities=23%  Similarity=0.093  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|++|||||+..+.++..+...+
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s   41 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLDAPDE   41 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence            4578899999999999999999887654333

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.91  E-value=0.0033  Score=42.44  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~   53 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEELP   53 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46888999999999999999998876543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.88  E-value=0.0037  Score=41.69  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|||||+..+.+...+.
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998886554

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=95.88  E-value=0.0074  Score=39.73  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=23.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...|+|.|.+|+|||+.++.+...|.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998875

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.88  E-value=0.0036  Score=42.34  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|||||+..+.+.-.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p   52 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLERP   52 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.88  E-value=0.0039  Score=42.06  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~   53 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGP   53 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788999999999999999998876543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.88  E-value=0.0052  Score=41.32  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |.|+|.||||||+.++.+...|.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999998875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.88  E-value=0.0036  Score=42.45  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|||||+..+.+...+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIEKP   55 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

>PRK06217 hypothetical protein; Validated

Probab=95.87  E-value=0.0047  Score=41.23  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|-+|||||+.++.+.+.|
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999988765

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.85  E-value=0.0055  Score=39.95  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|+|.+|||||+.++.+.+.+.
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999998874

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.82  E-value=0.0041  Score=40.33  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |++.|.+|+|||+.++.+.+.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            5788999999999999988775

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK06547 hypothetical protein; Provisional

Probab=95.81  E-value=0.0091  Score=40.22  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=24.4

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +......-|+|.|.+|||||+.++.+.+.+
T Consensus        10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         10 LCGGGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            335667788999999999999999987654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.81  E-value=0.005  Score=42.04  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999988776

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.79  E-value=0.004  Score=45.66  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|+||+|||+.++.++..+..
T Consensus        39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p   67 (327)
T PRK11308         39 ERGKTLAVVGESGCGKSTLARLLTMIETP   67 (327)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence            56789999999999999999999887643

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=95.79  E-value=0.012  Score=41.22  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=26.7

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+...|+|+|-||||||+.+..+-+-|...+
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G   51 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG   51 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence            344567899999999999999988887776544

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.79  E-value=0.0067  Score=37.94  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++|+|.+|+|||+.++.++..++.
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~   25 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT   25 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh
Confidence            688999999999999999887764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.77  E-value=0.0071  Score=40.72  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+++.|.||.|||++++.+.++|-
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999998886

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.77  E-value=0.0044  Score=42.67  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            5678999999999999999998876654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>KOG0925|consensus

Probab=95.77  E-value=0.0098  Score=47.34  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=24.7

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      -+..|..-..||+|++.||.|||||+..-..+
T Consensus        52 k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~   83 (699)
T KOG0925|consen   52 KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFV   83 (699)
T ss_pred             HHHHHHHHhcCceEEEEecCCCCccccCcHHH
Confidence            34445555689999999999999999875543

>PTZ00301 uridine kinase; Provisional

Probab=95.76  E-value=0.0061  Score=42.44  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|.|+|-||||||+.++.+.+.|.
T Consensus         5 iIgIaG~SgSGKTTla~~l~~~l~   28 (210)
T PTZ00301          5 VIGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHH
Confidence            467899999999999998887663

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.76  E-value=0.0044  Score=45.16  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      .+...+-|.||||+|||+..|.+++..-..++
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G   68 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG   68 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence            46778889999999999999999987665444

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.73  E-value=0.0077  Score=42.27  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=25.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +....|+|+|+.|||||+..+.++.++...
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             ccceEEEEECCCccccchHHHHHhhhcccc
Confidence            356789999999999999999999877654

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.72  E-value=0.0053  Score=39.64  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.4

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|.|.||+|||+..+.+++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            68899999999999999998753

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.71  E-value=0.013  Score=42.89  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=26.1

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ......+++|+|.+|.|||...+.+++.+..
T Consensus        51 ~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~   81 (394)
T PRK00411         51 RGSRPLNVLIYGPPGTGKTTTVKKVFEELEE   81 (394)
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3456688999999999999999999987643

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.71  E-value=0.0045  Score=41.51  Aligned_cols=28  Identities=21%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999887654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=95.71  E-value=0.0059  Score=44.66  Aligned_cols=28  Identities=29%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||+|||+..+.++..+.
T Consensus        31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         31 TEGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            5788899999999999999999988663

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.71  E-value=0.0088  Score=46.65  Aligned_cols=36  Identities=31%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      ..++-.|+++|+|..|.|||+.++.+-+.|-|..+.
T Consensus        30 ~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~   65 (491)
T PRK14964         30 TLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGP   65 (491)
T ss_pred             HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCC
Confidence            345678899999999999999999999988765443

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.70  E-value=0.0093  Score=40.32  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+...|+|+|.+|+|||+.++.+...|.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~   49 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4667899999999999999999988774

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.70  E-value=0.005  Score=42.25  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+..
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   53 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLVEP   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            46788999999999999999998876543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.69  E-value=0.0071  Score=39.60  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|.|.+|||||+.++.+.+.+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999887554

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.68  E-value=0.0052  Score=41.64  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999887553

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=95.67  E-value=0.0055  Score=47.00  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.|.|.|+||+|||+..+.++..+...+
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~  386 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDS  386 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence            5789999999999999999999988775443

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.67  E-value=0.0068  Score=42.17  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |-|.|.+|||||+.++.+...|.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            56899999999999999998775

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.66  E-value=0.0049  Score=41.79  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998876553

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.66  E-value=0.005  Score=42.13  Aligned_cols=29  Identities=24%  Similarity=0.346  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|||||+..+.+...+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   52 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV   52 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46888999999999999999998876643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.66  E-value=0.0046  Score=45.43  Aligned_cols=29  Identities=28%  Similarity=0.453  Sum_probs=25.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||+|||+..+.++..+..
T Consensus        45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p   73 (331)
T PRK15079         45 YEGETLGVVGESGCGKSTFARAIIGLVKA   73 (331)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            56888999999999999999999887653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.64  E-value=0.0051  Score=42.45  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999999887654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.64  E-value=0.0067  Score=38.29  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=20.0

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|++|+|||+.++.+.+.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999888766

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.63  E-value=0.0052  Score=41.44  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678899999999999999999886554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.62  E-value=0.0047  Score=41.77  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678899999999999999998876553

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=95.62  E-value=0.0063  Score=44.67  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=17.2

Q ss_pred             ceEEecCCCCCccchhhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKV   57 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~   57 (79)
                      +-|||+|.||||||++.+.+
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l   21 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL   21 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH
Confidence            46899999999999998653

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=95.61  E-value=0.0059  Score=46.94  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=27.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||+|||+..+.++..+....
T Consensus       364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~  394 (576)
T TIGR02204       364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQS  394 (576)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence            6889999999999999999999998776544

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.61  E-value=0.0059  Score=44.20  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      .+..++-|.||||||||+.++.++-+.....++
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~   63 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGS   63 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce
Confidence            578899999999999999999998776654443

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.61  E-value=0.0083  Score=40.84  Aligned_cols=28  Identities=32%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999886543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.60  E-value=0.0055  Score=41.90  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+.-.+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999886554

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.60  E-value=0.0057  Score=41.22  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999999887654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.59  E-value=0.0055  Score=42.26  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|+|||+..+.+...+..
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   37 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35778999999999999999998876643

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.59  E-value=0.005  Score=42.17  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678899999999999999999886554

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.58  E-value=0.0086  Score=40.42  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999886543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.58  E-value=0.02  Score=42.35  Aligned_cols=38  Identities=26%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             HHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         27 PDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        27 Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..++++.. +-.++++|+|+.|.|||+.++.+.+.+.+.
T Consensus        27 ~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         27 AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            34444444 567889999999999999999999988653

>PRK10908 cell division protein FtsE; Provisional

Probab=95.56  E-value=0.0054  Score=41.82  Aligned_cols=28  Identities=32%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5788999999999999999999886654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.56  E-value=0.0056  Score=47.32  Aligned_cols=27  Identities=37%  Similarity=0.514  Sum_probs=25.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ++.+.+.|.|+||||||+..+.++.++
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            578899999999999999999999988

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.55  E-value=0.0057  Score=42.12  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        25 RPGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4688999999999999999999886553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=95.54  E-value=0.0057  Score=47.37  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=27.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..|.|.|.|+||+|||+..+.++..+...+
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~  395 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTE  395 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence            5789999999999999999999998776544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=95.53  E-value=0.0057  Score=48.29  Aligned_cols=32  Identities=16%  Similarity=0.276  Sum_probs=27.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..+.+.|.|+||||||+..|.++..+...+|
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G  508 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESG  508 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            57899999999999999999999988765443

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.53  E-value=0.0058  Score=41.18  Aligned_cols=28  Identities=32%  Similarity=0.394  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999998876554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.53  E-value=0.0059  Score=41.22  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   52 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEP   52 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.52  E-value=0.0095  Score=39.51  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999886554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.50  E-value=0.019  Score=40.91  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+....++|+|++|+|||+.++.+.+.+.+
T Consensus        31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~   62 (337)
T PRK12402         31 VDSPNLPHLLVQGPPGSGKTAAVRALARELYG   62 (337)
T ss_pred             HhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            33444447999999999999999998887753

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.50  E-value=0.0088  Score=38.80  Aligned_cols=28  Identities=32%  Similarity=0.500  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +....|++.|+-|||||+.+|-+++.|-
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5667899999999999999999999883

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.49  E-value=0.0062  Score=41.33  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999876554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.49  E-value=0.0087  Score=37.98  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|.+|+|||+.++.+.+.|
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            48899999999999999988665

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.49  E-value=0.006  Score=43.48  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=25.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+.+.|.|++|||||+..+.+...+...+
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~   65 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISET   65 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            4678899999999999999999987664433

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.48  E-value=0.0092  Score=43.46  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=23.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|+|+|..|||||+..+.++.++..
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            457999999999999999999988754

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.48  E-value=0.007  Score=39.92  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999887654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.47  E-value=0.0066  Score=41.17  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999999887654

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.47  E-value=0.019  Score=39.23  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+..++|+|++|+|||..++.+...+.
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~   67 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADAS   67 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999998887653

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.47  E-value=0.0086  Score=43.96  Aligned_cols=28  Identities=32%  Similarity=0.542  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||+|||+..+.++..+.
T Consensus        40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         40 RAGETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            5678999999999999999999987764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.47  E-value=0.0097  Score=40.86  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+...+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999999988763

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=95.47  E-value=0.024  Score=41.85  Aligned_cols=42  Identities=21%  Similarity=0.208  Sum_probs=35.2

Q ss_pred             hHHHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         25 GGPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        25 ~~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..|+.++.. +-.++++|+|..|.||+..++.+.+.|.|...
T Consensus         9 ~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~   51 (328)
T PRK05707          9 QSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAP   51 (328)
T ss_pred             HHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence            4677777764 55889999999999999999999999988653

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=95.47  E-value=0.0063  Score=47.18  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=27.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.|.|.|+||+|||+..+.++..+....
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~  389 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQS  389 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence            5788899999999999999999998776544

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.46  E-value=0.0063  Score=41.32  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   57 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLLKP   57 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.46  E-value=0.0063  Score=41.82  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|||||+..+.+...+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p   52 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLLRP   52 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=95.45  E-value=0.0062  Score=41.30  Aligned_cols=27  Identities=26%  Similarity=0.236  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+ +.+.|.|++|+|||+..+.+.-.+.
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            45 8899999999999999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.44  E-value=0.01  Score=40.96  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999886653

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.44  E-value=0.0065  Score=40.15  Aligned_cols=28  Identities=29%  Similarity=0.334  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998876553

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.44  E-value=0.0062  Score=42.28  Aligned_cols=29  Identities=28%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|+|||+.++.+...+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   55 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRLAP   55 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999988876643

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.44  E-value=0.009  Score=40.76  Aligned_cols=26  Identities=35%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      -.|.|.|.||||||+..+.++..|..
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhh
Confidence            35789999999999999999998864

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.43  E-value=0.0099  Score=40.86  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+++.|.|.+|+|||+..+.+...+.
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999887654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.43  E-value=0.0082  Score=43.94  Aligned_cols=28  Identities=21%  Similarity=0.469  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||||||+..+.++..+.
T Consensus        31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         31 KQGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            5678899999999999999999998764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.43  E-value=0.0066  Score=41.83  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+...+..
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   53 (240)
T PRK09493         25 DQGEVVVIIGPSGSGKSTLLRCINKLEEI   53 (240)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876643

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.42  E-value=0.012  Score=43.45  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=27.1

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+..+.. .....|+|+|.+|||||+..+.++.++.
T Consensus       113 ~l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       113 VLRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             HHHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            3444443 3456799999999999999999988764

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=95.42  E-value=0.0069  Score=47.99  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.|.|.|+||||||+..+.++..+....
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~  528 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARS  528 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence            5789999999999999999999988765443

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.41  E-value=0.0071  Score=41.29  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4678999999999999999999887654

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.41  E-value=0.0085  Score=40.73  Aligned_cols=25  Identities=12%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-.|+|+|.||+||++..+.+++.+
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3468999999999999999998765

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.41  E-value=0.0072  Score=42.73  Aligned_cols=29  Identities=24%  Similarity=0.362  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+++.|.|++|||||+..+.+...+..
T Consensus        48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p   76 (269)
T cd03294          48 REGEIFVIMGLSGSGKSTLLRCINRLIEP   76 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46789999999999999999998876643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=95.40  E-value=0.012  Score=39.64  Aligned_cols=26  Identities=27%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...++|.|.||+|||+..+.+...+.
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999887653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.40  E-value=0.0067  Score=41.70  Aligned_cols=28  Identities=21%  Similarity=0.219  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+..+.+.-.+.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999887654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.39  E-value=0.01  Score=41.19  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            567889999999999999999988643

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.38  E-value=0.0071  Score=42.51  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.38  E-value=0.023  Score=39.68  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=24.5

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .......++|.|.+|+|||..++.+...+.
T Consensus        41 ~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~   70 (235)
T PRK08084         41 RQEHSGYIYLWSREGAGRSHLLHAACAELS   70 (235)
T ss_pred             hCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            344557899999999999999988777655

>PRK14531 adenylate kinase; Provisional

Probab=95.38  E-value=0.012  Score=39.39  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.|+|.|-+|||||+.++.+.+.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            569999999999999999987665

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.38  E-value=0.0075  Score=41.09  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~   60 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANYLP   60 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876643

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.38  E-value=0.0072  Score=40.82  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998886654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=95.38  E-value=0.0071  Score=48.98  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+.|.|.|+||||||+.+|.+........
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~  527 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ  527 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            5678899999999999999999987765443

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.37  E-value=0.011  Score=40.96  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        25 PKNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            5688899999999999999999886654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14527 adenylate kinase; Provisional

Probab=95.35  E-value=0.012  Score=39.38  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.+.|++.|.+|||||+.++.+.+.+
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999998887444

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.35  E-value=0.0096  Score=40.75  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            5788999999999999999998887654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.34  E-value=0.0098  Score=42.10  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.|++.|.+|||||+.++.+.+.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            568999999999999999988766

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.34  E-value=0.011  Score=40.91  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467889999999999999999887655

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.34  E-value=0.0077  Score=40.41  Aligned_cols=28  Identities=14%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.+.|.|++|+|||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999887654

>PRK04182 cytidylate kinase; Provisional

Probab=95.34  E-value=0.011  Score=38.38  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=19.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+-|
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999887543

>PRK04040 adenylate kinase; Provisional

Probab=95.32  E-value=0.01  Score=40.42  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|+|.+|+|||+.++.+.+.|
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998877

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.32  E-value=0.0082  Score=42.23  Aligned_cols=28  Identities=32%  Similarity=0.293  Sum_probs=23.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.+.|.|++|+|||+..+.+...+..
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p   51 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKP   51 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            5788999999999999999998776543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.32  E-value=0.012  Score=40.32  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .....|+|+|.||+|||+..+.+.+.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45677899999999999999888754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.31  E-value=0.0077  Score=41.79  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFYKP   57 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            46789999999999999999998876543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.31  E-value=0.0073  Score=40.86  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+...-+++.++|.|.||.|||+..+.++...
T Consensus        26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3344444456889999999999999999988764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.31  E-value=0.0076  Score=42.67  Aligned_cols=29  Identities=21%  Similarity=0.226  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p   64 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLETP   64 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788999999999999999998876543

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.30  E-value=0.011  Score=38.89  Aligned_cols=22  Identities=23%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|.+|||||+.++.+.+.+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999988765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=95.30  E-value=0.013  Score=38.80  Aligned_cols=33  Identities=36%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.....+.|+|.|..|+|||...+.+++.+
T Consensus        12 ~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen   12 KELLESGPSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             HHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             HHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            344445568999999999999999999888765

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.29  E-value=0.013  Score=43.78  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=27.8

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +..++. ....-|+|+|.+|||||+..+.+++++..
T Consensus       126 ~~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i~~  160 (358)
T TIGR02524       126 IIDAIA-PQEGIVFITGATGSGKSTLLAAIIRELAE  160 (358)
T ss_pred             HHHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            344443 35678999999999999999999998864

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.29  E-value=0.01  Score=37.94  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|+|.+|||||+.++.+.+.+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Confidence            6899999999999999887753

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.29  E-value=0.012  Score=38.49  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=23.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .|.|.|.+++|||+.++.++++|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~   27 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRR   27 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence            47899999999999999999999753

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.28  E-value=0.0082  Score=40.72  Aligned_cols=28  Identities=29%  Similarity=0.290  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4677899999999999999999887654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.27  E-value=0.0084  Score=42.37  Aligned_cols=29  Identities=24%  Similarity=0.353  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+...+..
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   61 (271)
T PRK13632         33 NEGEYVAILGHNGSGKSTISKILTGLLKP   61 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57889999999999999999988876543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.26  E-value=0.0082  Score=40.56  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .....+.|.|++|+|||+..+.+...+..
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p   53 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46778899999999999999998876543

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.26  E-value=0.01  Score=40.73  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |.|+|-||||||+.++.+.+.+
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            6889999999999999998876

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=95.25  E-value=0.023  Score=42.68  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.++......+++|.|++|+|||+.++.+.+.+
T Consensus        25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         25 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             hHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456777777777899999999999999999887643

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=95.25  E-value=0.031  Score=44.02  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=29.2

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+-.++++|+|+.|.|||+.++.+.+.|.|..
T Consensus        33 ~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~   66 (559)
T PRK05563         33 KQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLN   66 (559)
T ss_pred             HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            3456788899999999999999999999887754

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.24  E-value=0.012  Score=40.67  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999886553

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.24  E-value=0.0083  Score=47.45  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.|.|.|+||||||+..+.++..+....
T Consensus       489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~  519 (694)
T TIGR03375       489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE  519 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            5789999999999999999999988776544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.24  E-value=0.0078  Score=41.42  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          46 PRGERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999999887554

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=95.24  E-value=0.0097  Score=44.04  Aligned_cols=26  Identities=23%  Similarity=0.452  Sum_probs=22.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...|+|+|.+|||||+..+.++.++.
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            45599999999999999999988775

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=95.23  E-value=0.014  Score=38.94  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.|+|.|.+|+|||+..+.+...+
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc
Confidence            5679999999999999999987654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.23  E-value=0.0083  Score=41.71  Aligned_cols=29  Identities=17%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   52 (252)
T TIGR03005        24 AAGEKVALIGPSGSGKSTILRILMTLEPI   52 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.23  E-value=0.0093  Score=44.49  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|+|.+|||||+..+.++.++.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            456699999999999999999998764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.23  E-value=0.013  Score=39.71  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            578899999999999999999887654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.22  E-value=0.0079  Score=42.44  Aligned_cols=29  Identities=17%  Similarity=0.107  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLLRP   53 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            46788999999999999999988876543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.22  E-value=0.013  Score=40.60  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|||||+.++.+...+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            467889999999999999999988755

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.22  E-value=0.013  Score=41.21  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            578899999999999999999987643

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=95.21  E-value=0.0097  Score=43.70  Aligned_cols=19  Identities=37%  Similarity=0.560  Sum_probs=16.6

Q ss_pred             eEEecCCCCCccchhhhhh
Q psy17856         39 SILCTGESGAGKTENTKKV   57 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~   57 (79)
                      -|||+|.||||||.+.+.+
T Consensus         3 lvIVTGlSGAGKsvAl~~l   21 (286)
T COG1660           3 LVIVTGLSGAGKSVALRVL   21 (286)
T ss_pred             EEEEecCCCCcHHHHHHHH
Confidence            4899999999999998754

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.20  E-value=0.011  Score=41.24  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-|+|+|.||+||++.++.++.-.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4568999999999999999998655

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.20  E-value=0.0086  Score=39.85  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~   52 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLRPP   52 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999988876543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.20  E-value=0.0092  Score=40.69  Aligned_cols=28  Identities=21%  Similarity=0.487  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            5678899999999999999999876553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.19  E-value=0.038  Score=43.18  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=26.8

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +..+....++.|+|+||+|+|||..++.+.++.
T Consensus        78 ~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~  110 (531)
T TIGR02902        78 KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA  110 (531)
T ss_pred             HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            333445678999999999999999999987754

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.19  E-value=0.0092  Score=41.27  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        24 PTGSLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788999999999999999999887654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.18  E-value=0.0098  Score=40.04  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            5788999999999999999998877553

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.18  E-value=0.009  Score=41.04  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   51 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFLTP   51 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46889999999999999999988765543

>PRK03839 putative kinase; Provisional

Probab=95.18  E-value=0.013  Score=38.74  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|-+|+|||+.++.+.+.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999987754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.18  E-value=0.014  Score=40.43  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999998886553

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.18  E-value=0.011  Score=39.03  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4678899999999999999998887654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=95.18  E-value=0.034  Score=41.19  Aligned_cols=42  Identities=12%  Similarity=0.172  Sum_probs=34.6

Q ss_pred             hHHHHHhH----hcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         25 GGPDQVYL----SDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        25 ~~Ay~~m~----~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +.+|+.+.    .++-.++++|+|..|.||...+..+.++|.|...
T Consensus         8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~   53 (334)
T PRK07993          8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQP   53 (334)
T ss_pred             hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence            45666554    3577899999999999999999999999988643

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.17  E-value=0.009  Score=42.22  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419         36 KSGETVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998876554

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.17  E-value=0.014  Score=39.48  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .....+.|.|+||+|||+..+.++
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            456778999999999999999774

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.17  E-value=0.014  Score=40.55  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.+.|.|.+|+|||+.++.+...
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         29 NQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999998764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=95.17  E-value=0.0098  Score=42.16  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=27.5

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      -.+.+.+.|.|++|+|||+..+.+...+...++
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G   55 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLG   55 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            357889999999999999999999887764443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.16  E-value=0.0088  Score=40.60  Aligned_cols=30  Identities=20%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+.+.|.|++|+|||+..+.+...+...
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~   51 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPA   51 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            468889999999999999999998766433

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.16  E-value=0.011  Score=39.97  Aligned_cols=28  Identities=25%  Similarity=0.466  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678999999999999999999887654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.15  E-value=0.0091  Score=40.32  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          24 AAGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.15  E-value=0.014  Score=39.74  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++.+.+.|.|++|+|||+..+.+.-.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5688999999999999999998886553

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.15  E-value=0.01  Score=40.70  Aligned_cols=28  Identities=36%  Similarity=0.443  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            5688999999999999999998886543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=95.15  E-value=0.0089  Score=45.67  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=26.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||+|||+..+.++..+....
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~  376 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTE  376 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            5788999999999999999999988775443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.14  E-value=0.015  Score=39.19  Aligned_cols=28  Identities=29%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999998887553

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.14  E-value=0.031  Score=44.74  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             HHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         27 PDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        27 Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..+..+ ..+-.++++|+|..|.|||+.++.+.+.|.|..
T Consensus        27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~   66 (605)
T PRK05896         27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN   66 (605)
T ss_pred             HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            334444 456789999999999999999999999987654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.13  E-value=0.014  Score=40.88  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+...+
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            568889999999999999999988654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.13  E-value=0.01  Score=41.02  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999998876554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.12  E-value=0.027  Score=42.52  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=28.4

Q ss_pred             hHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         25 GGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        25 ~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +...+.+..  .+-.|+|+|.+|||||+..+.+++++..
T Consensus       139 ~~~~~~l~~--~~GlilI~G~TGSGKTT~l~al~~~i~~  175 (372)
T TIGR02525       139 PDLFNSLLP--AAGLGLICGETGSGKSTLAASIYQHCGE  175 (372)
T ss_pred             HHHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            344444543  3456899999999999999999998864

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.11  E-value=0.01  Score=39.27  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678899999999999999998876543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.11  E-value=0.0096  Score=41.26  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..+.+.-.+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998887554

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.10  E-value=0.009  Score=42.26  Aligned_cols=29  Identities=14%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p   59 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVP   59 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=95.10  E-value=0.037  Score=40.82  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=35.7

Q ss_pred             chHHHHHhHh--cCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         24 TGGPDQVYLS--DREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        24 a~~Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      -+.+|+.+..  .+-.++++|+|..|.||+..++.+.+.|.|..
T Consensus         6 ~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~   49 (325)
T PRK08699          6 HQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET   49 (325)
T ss_pred             cHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence            3567777774  57789999999999999999999999998754

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=95.10  E-value=0.023  Score=37.85  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             HHhH-hcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         29 QVYL-SDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        29 ~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.++ ..+-.++++|.|+.|.|||+.++.+.+.+.+.
T Consensus         5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~   41 (188)
T TIGR00678         5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE   41 (188)
T ss_pred             HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            3444 44567899999999999999999999988764

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.10  E-value=0.015  Score=40.38  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678899999999999999998887653

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.09  E-value=0.014  Score=39.60  Aligned_cols=23  Identities=43%  Similarity=0.588  Sum_probs=20.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|-|||||++.++.+.+.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998764

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.09  E-value=0.015  Score=40.28  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             CCCceEEecCCCCCccchhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKK   56 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~   56 (79)
                      .+.+.+.|.|+||||||+....
T Consensus        19 ~~Ge~~~l~G~sGsGKSTL~~~   40 (226)
T cd03270          19 PRNKLVVITGVSGSGKSSLAFD   40 (226)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHH
Confidence            5788999999999999999633

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.09  E-value=0.0095  Score=40.37  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=24.9

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .-.+...+.|.|.+|+|||+..+.+...+.
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            335778899999999999999998877654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.09  E-value=0.01  Score=41.87  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788899999999999999999887654

>PRK08727 hypothetical protein; Validated

Probab=95.09  E-value=0.026  Score=39.36  Aligned_cols=30  Identities=17%  Similarity=0.227  Sum_probs=24.6

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ....+.|+|.|.+|+|||..+..+...++.
T Consensus        38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~   67 (233)
T PRK08727         38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQ   67 (233)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            445677999999999999999888776553

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.09  E-value=0.014  Score=40.74  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=21.2

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|+|-+|||||+.++.+.++|.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999988874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.08  E-value=0.024  Score=44.36  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=30.0

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +...+..++++|+|+.|.|||+.++.+.+.|.+..
T Consensus        37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         37 ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            44456689999999999999999999999987754

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.08  E-value=0.014  Score=39.14  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5678899999999999999998874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.08  E-value=0.011  Score=40.11  Aligned_cols=29  Identities=14%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   56 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLVEL   56 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            46788999999999999999988866543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=95.05  E-value=0.01  Score=41.87  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+.+.|.|++|+|||+..+.+...+...+
T Consensus        37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~   67 (267)
T PRK15112         37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTS   67 (267)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence            4678899999999999999999887664433

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.05  E-value=0.023  Score=41.74  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=29.2

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |..+..+.-..|.|+|.+|||||+..+.+++.|..
T Consensus        96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463         96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45555677889999999999999999999987753

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=95.05  E-value=0.016  Score=39.39  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            5688999999999999999999886654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.05  E-value=0.01  Score=42.41  Aligned_cols=30  Identities=17%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|.+|||||+..+.+...+...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~   60 (286)
T PRK13646         31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT   60 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            568899999999999999999998765433

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.02  E-value=0.017  Score=38.81  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998887653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.02  E-value=0.01  Score=41.65  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+...+..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p   54 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGELSP   54 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.02  E-value=0.01  Score=41.39  Aligned_cols=29  Identities=21%  Similarity=0.178  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~   57 (257)
T PRK10619         29 NAGDVISIIGSSGSGKSTFLRCINFLEKP   57 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876643

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.02  E-value=0.011  Score=40.32  Aligned_cols=29  Identities=28%  Similarity=0.456  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+...+..
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   63 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLLHV   63 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998875543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.01  E-value=0.0098  Score=42.22  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             ccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856         16 HIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus        16 hi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      |.++.|+++-.+         .+.+-|.|.||||||+..+.+--|....++.
T Consensus        13 ~~~~~fdl~v~~---------ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~   55 (231)
T COG3840          13 HLPMRFDLTVPA---------GEIVAILGPSGAGKSTLLNLIAGFETPASGE   55 (231)
T ss_pred             cceEEEEEeecC---------CcEEEEECCCCccHHHHHHHHHhccCCCCce
Confidence            445556665543         5677888999999999999999888766643

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.01  E-value=0.034  Score=39.21  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=26.4

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+..+.......++|+|+.|+|||+.++.+...+.
T Consensus        29 l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         29 LKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            33444444445689999999999999999987764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.00  E-value=0.011  Score=40.54  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++.+.+.|.|++|+|||+..+.+...+.
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567899999999999999999887654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=94.99  E-value=0.011  Score=40.51  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            5688899999999999999998886654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=94.99  E-value=0.012  Score=46.98  Aligned_cols=31  Identities=16%  Similarity=0.240  Sum_probs=27.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||+|||+..+.++..+...+
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~  535 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLYQPTG  535 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence            5789999999999999999999998876544

>PRK06893 DNA replication initiation factor; Validated

Probab=94.99  E-value=0.034  Score=38.58  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+++|.|.+|+|||..+..+...++.
T Consensus        36 ~~~~~~l~l~G~~G~GKThL~~ai~~~~~~   65 (229)
T PRK06893         36 DLQQPFFYIWGGKSSGKSHLLKAVSNHYLL   65 (229)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            455677899999999999999988876643

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.98  E-value=0.017  Score=40.23  Aligned_cols=28  Identities=18%  Similarity=0.213  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         31 LKNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4688999999999999999999886654

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=94.98  E-value=0.011  Score=46.88  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.|.|.|+||||||+..+.++..+....
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~  533 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWS  533 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            5789999999999999999999988775443

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=94.98  E-value=0.011  Score=41.65  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..+.+.-.+.
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998886654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.98  E-value=0.018  Score=38.28  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|+|||+..+.+...+.
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999988876553

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=94.96  E-value=0.014  Score=42.44  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=23.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|+|.+|||||+..+.++.++.
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            456899999999999999999887764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.96  E-value=0.017  Score=40.32  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.+.+.|.|++|+|||+..+.+.-.+
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            468889999999999999999988654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.96  E-value=0.016  Score=39.23  Aligned_cols=28  Identities=18%  Similarity=0.309  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            4678999999999999999999887654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=94.96  E-value=0.01  Score=41.70  Aligned_cols=28  Identities=18%  Similarity=0.147  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678899999999999999998887553

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=94.96  E-value=0.017  Score=40.69  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         44 EKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            578899999999999999999888755

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.95  E-value=0.017  Score=40.00  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.+.|.|++|+|||+..+.+...
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            46788999999999999999998754

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.95  E-value=0.038  Score=43.10  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             HHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         27 PDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        27 Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +.++++ ..+-.++++|+|..|.|||+.++.+.+.|-|..
T Consensus        27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~   66 (509)
T PRK14958         27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK   66 (509)
T ss_pred             HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            344444 457788999999999999999999999997654

>KOG0924|consensus

Probab=94.94  E-value=0.016  Score=47.73  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=26.0

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |++-++-   |..-++||.|||.||+|||||+.   +-|||..
T Consensus       358 f~~R~~l---l~~ir~n~vvvivgETGSGKTTQ---l~QyL~e  394 (1042)
T KOG0924|consen  358 FACRDQL---LSVIRENQVVVIVGETGSGKTTQ---LAQYLYE  394 (1042)
T ss_pred             HHHHHHH---HHHHhhCcEEEEEecCCCCchhh---hHHHHHh
Confidence            5555433   33347899999999999999986   4455543

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=94.94  E-value=0.017  Score=39.98  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            468889999999999999999987643

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.94  E-value=0.011  Score=40.53  Aligned_cols=28  Identities=18%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..+.+.-.+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.94  E-value=0.017  Score=40.08  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            568889999999999999999887654

>PRK13764 ATPase; Provisional

Probab=94.93  E-value=0.027  Score=45.00  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=23.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...|+|+|.+|||||+.++.++.++.
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45599999999999999999998886

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.93  E-value=0.017  Score=41.51  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .+...++|.|.||||||+..|.+-
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            356778999999999999887653

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=94.93  E-value=0.018  Score=40.25  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         27 QRGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678999999999999999999886654

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=94.92  E-value=0.012  Score=41.61  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998886654

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=94.92  E-value=0.027  Score=43.72  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .++.+.. ...-.|+|+|.+|||||+....++..+.
T Consensus       233 ~l~~~~~-~~~GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       233 RFERLIR-RPHGIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             HHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence            3444443 3334689999999999999998888774

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.92  E-value=0.018  Score=37.88  Aligned_cols=28  Identities=29%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998886554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=94.92  E-value=0.012  Score=40.57  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

>PRK07667 uridine kinase; Provisional

Probab=94.91  E-value=0.017  Score=39.03  Aligned_cols=26  Identities=19%  Similarity=0.120  Sum_probs=22.4

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      --|.|+|-+|||||+.++.+.+.|..
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~~   43 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMKQ   43 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36688999999999999999988753

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=94.91  E-value=0.031  Score=41.70  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=31.4

Q ss_pred             hHHHHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         25 GGPDQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        25 ~~Ay~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .......+. .+-.+.++|+|+.|.||++.++.+.++|.+
T Consensus        32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            344455444 455889999999999999999999999987

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=94.91  E-value=0.012  Score=40.46  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        26 DPGELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=94.91  E-value=0.013  Score=45.35  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||||||+..+.+++++-...
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~  383 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS  383 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence            5788889999999999999999999987633

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.90  E-value=0.018  Score=39.92  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|||||+..+.+...+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467889999999999999999887654

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=94.90  E-value=0.012  Score=41.42  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|+|||+..+.+...+..
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   63 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLEKP   63 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999988876543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=94.90  E-value=0.011  Score=42.46  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|||||+..+.+.-.+..
T Consensus        28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p   56 (303)
T TIGR01288        28 ARGECFGLLGPNGAGKSTIARMLLGMISP   56 (303)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999998876543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=94.89  E-value=0.018  Score=37.58  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=21.9

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |+|.|-.|||||+.++.+.+.|..
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~~   26 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLEA   26 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999998853

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK00698 tmk thymidylate kinase; Validated

Probab=94.88  E-value=0.023  Score=37.75  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +-.|+|.|-.|||||+.++.+.+.|..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~   29 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ   29 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            347899999999999999999998754

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.88  E-value=0.026  Score=41.42  Aligned_cols=42  Identities=14%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +.-.+.||-++.... ..+|+++|+.|+|||+..+.++.+.-.
T Consensus       128 ~~~~~~ayL~~~ie~-~~siii~G~t~sGKTt~lnall~~Ip~  169 (312)
T COG0630         128 ISPEQAAYLWLAIEA-RKSIIICGGTASGKTTLLNALLDFIPP  169 (312)
T ss_pred             CCHHHHHHHHHHHHc-CCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            445556776555543 356999999999999999998877653

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=94.87  E-value=0.019  Score=38.70  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999999888765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=94.86  E-value=0.012  Score=41.13  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+.++.+.-.+.
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=94.86  E-value=0.019  Score=40.63  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         48 HENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5678899999999999999999987653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.84  E-value=0.019  Score=39.82  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         28 YENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            468899999999999999999988654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=94.84  E-value=0.019  Score=38.76  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.+.|.|++|+|||+..+.+...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            56789999999999999999988765

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.84  E-value=0.019  Score=40.16  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|||||+..+.+...+
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         36 PKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467889999999999999999988654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=94.83  E-value=0.017  Score=39.95  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +..+.+.|.|.+|+|||+..+.+...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         31 NKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            56788999999999999999988764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=94.83  E-value=0.019  Score=40.18  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         28 HHGEMVALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999887654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.83  E-value=0.021  Score=37.64  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4688899999999999999988877654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=94.82  E-value=0.02  Score=40.38  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         43 PEKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4678899999999999999999887653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.82  E-value=0.013  Score=45.61  Aligned_cols=32  Identities=13%  Similarity=0.219  Sum_probs=27.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..+.+.|.|+||+|||+..+.++.++...++
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G  395 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG  395 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            67889999999999999999999988765443

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=94.81  E-value=0.012  Score=45.40  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||+|||+..+.++..+....
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~  377 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQS  377 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            5789999999999999999999988765433

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=94.81  E-value=0.019  Score=40.07  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+..+.+.-.+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678899999999999999999887653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=94.81  E-value=0.013  Score=42.20  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|.+|||||+..+.+...+...+
T Consensus        17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~   47 (302)
T TIGR01188        17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTS   47 (302)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            4678899999999999999999887664433

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=94.80  E-value=0.013  Score=46.32  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=26.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++..++-|.||||||||+..|.++..+...+
T Consensus       315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~  345 (539)
T COG1123         315 REGETLGLVGESGSGKSTLARILAGLLPPSS  345 (539)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            4667788999999999999999998776644

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=94.80  E-value=0.02  Score=44.73  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=27.3

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      -++.|++-|.||||||||+....+++.+...
T Consensus       310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~  340 (534)
T COG4172         310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ  340 (534)
T ss_pred             ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence            4688999999999999999999999877654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.80  E-value=0.02  Score=40.65  Aligned_cols=27  Identities=22%  Similarity=0.230  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+...+
T Consensus        44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         44 PAKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            567889999999999999999887654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.79  E-value=0.02  Score=40.51  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         37 PRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            567889999999999999999987654

>cd00879 Sar1 Sar1 subfamily

Probab=94.79  E-value=0.03  Score=36.67  Aligned_cols=35  Identities=20%  Similarity=0.053  Sum_probs=26.0

Q ss_pred             hHHHHHhHhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856         25 GGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        25 ~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .++...|-...+.--|+|.|.+|+|||+..+.+..
T Consensus         7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            34555554455566789999999999999988763

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=94.78  E-value=0.022  Score=37.94  Aligned_cols=24  Identities=38%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-|||+|.||+||++..+.+++-+
T Consensus         3 r~ivl~Gpsg~GK~~l~~~L~~~~   26 (183)
T PF00625_consen    3 RPIVLVGPSGSGKSTLAKRLIQEF   26 (183)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999999998755

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=94.77  E-value=0.015  Score=39.67  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            5788999999999999999998887653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.77  E-value=0.013  Score=41.55  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~   54 (275)
T PRK13639         26 EKGEMVALLGPNGAGKSTLFLHFNGILKP   54 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            57889999999999999999998876543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.76  E-value=0.02  Score=39.62  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         27 FKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467889999999999999999988654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=94.76  E-value=0.013  Score=40.79  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         26 PTGKITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678899999999999999999887553

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=94.76  E-value=0.02  Score=40.46  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         31 PGGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999998876543

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=94.76  E-value=0.038  Score=36.64  Aligned_cols=28  Identities=29%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..-.|+|+|.+|+|||+.++.+...|.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556889999999999999999998874

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.75  E-value=0.021  Score=39.54  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         28 QRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            468889999999999999999988765

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=94.75  E-value=0.015  Score=39.70  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~   56 (220)
T TIGR02982        29 NPGEIVILTGPSGSGKTTLLTLIGGLRS   56 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999887653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=94.74  E-value=0.019  Score=40.71  Aligned_cols=24  Identities=38%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|-|+|-||||||+.++.+...|-
T Consensus        10 iIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572          10 IIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            356799999999999999998776

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=94.73  E-value=0.019  Score=39.58  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +..+.+.|.|.+|+|||+..+.+...
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         25 RPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            46788999999999999999988775

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=94.73  E-value=0.025  Score=37.06  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+++.|+.|+|||+.+..+...+...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~   27 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKK   27 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            47899999999999999988877643

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.72  E-value=0.022  Score=39.57  Aligned_cols=27  Identities=19%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+
T Consensus        29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         29 YKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467889999999999999999887654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=94.71  E-value=0.02  Score=40.27  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   58 (265)
T PRK10253         31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678999999999999999998876543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.71  E-value=0.022  Score=39.90  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..|.+...+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         31 YRNKVTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4678899999999999999999987653

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.70  E-value=0.038  Score=43.67  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             HHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         29 QVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        29 ~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..++. .+-...++|+|+.|.|||+.++.+.+.|.+..
T Consensus        29 ~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~   66 (546)
T PRK14957         29 VHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKT   66 (546)
T ss_pred             HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence            33444 45667799999999999999999999987643

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=94.70  E-value=0.016  Score=39.73  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          25 PAGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678899999999999999999886554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13479 AAA_24: AAA domain

Probab=94.70  E-value=0.019  Score=39.45  Aligned_cols=22  Identities=32%  Similarity=0.444  Sum_probs=19.5

Q ss_pred             CCceEEecCCCCCccchhhhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKV   57 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~   57 (79)
                      ++..|+|.|++|+|||+.+..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            5678999999999999988776

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=94.69  E-value=0.022  Score=40.08  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         34 PKNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            568899999999999999999988643

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=94.69  E-value=0.013  Score=37.85  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467888999999999999999887654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.69  E-value=0.021  Score=34.63  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=17.8

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...+.++.
T Consensus         2 I~V~G~~g~GKTsLi~~l~~   21 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCG   21 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhc
Confidence            78899999999999888774

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=94.69  E-value=0.02  Score=39.98  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         20 RAGEILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467889999999999999999887654

>PLN02165 adenylate isopentenyltransferase

Probab=94.68  E-value=0.024  Score=42.41  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=27.4

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|..+.....|+|.|.+|||||..+..+.+.+
T Consensus        35 ~~~~~~~~g~iivIiGPTGSGKStLA~~LA~~l   67 (334)
T PLN02165         35 VAMEQNCKDKVVVIMGATGSGKSRLSVDLATRF   67 (334)
T ss_pred             cccccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence            346677777789999999999999998877765

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.68  E-value=0.022  Score=40.15  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+++.|.|++|+|||+..+.+...+.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (261)
T PRK14263         32 RKNEITGFIGPSGCGKSTVLRSLNRMND   59 (261)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence            4688999999999999999998876553

>PRK13695 putative NTPase; Provisional

Probab=94.67  E-value=0.022  Score=37.55  Aligned_cols=23  Identities=39%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|+|++|+|||+.++.+...+.
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999877654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.67  E-value=0.013  Score=39.52  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=21.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.|.|++|+|||+..+.+...+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            788999999999999999887654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.65  E-value=0.022  Score=40.55  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=20.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ++.-.+.|.|.||||||+....+--
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4566789999999999999876543

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.64  E-value=0.015  Score=42.47  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|.+|||||+..+.+...+...
T Consensus        50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~   79 (320)
T PRK13631         50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK   79 (320)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            578899999999999999999988766433

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=94.64  E-value=0.022  Score=41.96  Aligned_cols=27  Identities=30%  Similarity=0.529  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|+|.+|||||+..+.++.++.
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~~  173 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEMV  173 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            456799999999999999999998764

>cd04155 Arl3 Arl3 subfamily

Probab=94.64  E-value=0.036  Score=35.50  Aligned_cols=30  Identities=30%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +....+.-.|+|.|.+|+|||+..+.+...
T Consensus         8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155           8 LRKSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             hhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            333444567899999999999999888753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=94.62  E-value=0.024  Score=38.77  Aligned_cols=28  Identities=18%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4688899999999999999998776553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.62  E-value=0.024  Score=39.25  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         27 PARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467889999999999999999987654

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.62  E-value=0.045  Score=42.81  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             HHHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         27 PDQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        27 Ay~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+++. .+-.+.++|+|..|.|||+.++.+.+.|.+.
T Consensus        27 ~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         27 ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3444444 4667888999999999999999999998764

>PLN03025 replication factor C subunit; Provisional

Probab=94.60  E-value=0.049  Score=39.45  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=28.5

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.....-..++|.|.+|+|||+.++.+.+.+.+
T Consensus        25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (319)
T PLN03025         25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG   60 (319)
T ss_pred             HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence            345555556667999999999999999999887743

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=94.59  E-value=0.019  Score=36.65  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+.-|+|+||.|+||+..++.+..+.
T Consensus        19 ~~~~pvli~GE~GtGK~~~A~~lh~~~   45 (138)
T PF14532_consen   19 KSSSPVLITGEPGTGKSLLARALHRYS   45 (138)
T ss_dssp             CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred             CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence            567779999999999999888776643

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.59  E-value=0.024  Score=40.33  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         45 PARAVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678899999999999999999886553

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=94.58  E-value=0.015  Score=42.90  Aligned_cols=28  Identities=25%  Similarity=0.216  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||||||+..+.+.-.+.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~   49 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLTR   49 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4578899999999999999999887654

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=94.58  E-value=0.05  Score=44.84  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..++-++.+||+|..|.|||+.++.+.+.|.|..+
T Consensus        31 i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~   66 (824)
T PRK07764         31 LDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG   66 (824)
T ss_pred             HHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccC
Confidence            334577888999999999999999999999987543

>PRK14530 adenylate kinase; Provisional

Probab=94.58  E-value=0.022  Score=38.83  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|+|.|-+|||||+.++.+.+.+-
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999887663

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.58  E-value=0.024  Score=39.75  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         40 HEKQVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            468899999999999999999987654

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=94.58  E-value=0.019  Score=40.25  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.+.|.|.+|+|||+..+.+...+.
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   72 (257)
T cd03288          45 KPGQKVGICGRTGSGKSSLSLAFFRMVD   72 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcccC
Confidence            5778899999999999999999887654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.57  E-value=0.014  Score=40.07  Aligned_cols=28  Identities=21%  Similarity=0.229  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (237)
T PRK11614         29 NQGEIVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678899999999999999988876543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=94.57  E-value=0.016  Score=44.57  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=26.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||+|||+..+.++..+....
T Consensus       342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~  372 (544)
T TIGR01842       342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTS  372 (544)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            5788999999999999999999998875444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=94.54  E-value=0.015  Score=42.80  Aligned_cols=30  Identities=20%  Similarity=0.142  Sum_probs=25.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|++|||||+..+.+...+...
T Consensus        29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~   58 (343)
T PRK11153         29 PAGEIFGVIGASGAGKSTLIRCINLLERPT   58 (343)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            467889999999999999999988766433

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=94.54  E-value=0.024  Score=40.39  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999877653

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.53  E-value=0.031  Score=32.36  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+|+|++|+|||+..-.+.-.|
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57999999999999886655443

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.53  E-value=0.016  Score=41.09  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+...
T Consensus        28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~   57 (277)
T PRK13652         28 PRNSRIAVIGPNGAGKSTLFRHFNGILKPT   57 (277)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            467889999999999999999988765433

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=94.52  E-value=0.017  Score=44.82  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||||||+..+.+...+...+
T Consensus       339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~  369 (569)
T PRK10789        339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSE  369 (569)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence            5788999999999999999999988775433

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=94.52  E-value=0.02  Score=45.29  Aligned_cols=30  Identities=23%  Similarity=0.282  Sum_probs=26.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+-|.||||||||+.+..++.++..-
T Consensus        33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~   62 (539)
T COG1123          33 EPGEILGIVGESGSGKSTLALALMGLLPEG   62 (539)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence            457788899999999999999999988654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.51  E-value=0.025  Score=40.43  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+...+
T Consensus        63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         63 PENQVTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            468899999999999999999988655

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.50  E-value=0.027  Score=36.40  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.+.+.|.|.+|+|||+..+.+...+
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988876544

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.48  E-value=0.043  Score=42.93  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             HHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         28 DQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        28 y~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.++. .+-.++++|+|+.|.|||+.++.+.+.|.+..
T Consensus        30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~   68 (484)
T PRK14956         30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN   68 (484)
T ss_pred             HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence            334444 44567899999999999999999999887643

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.48  E-value=0.043  Score=43.24  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=29.0

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+..++++|+|..|.|||+.++.+.+.|.+..
T Consensus        33 ~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~   66 (585)
T PRK14950         33 AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT   66 (585)
T ss_pred             HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            3356678899999999999999999999997654

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=94.48  E-value=0.031  Score=37.58  Aligned_cols=29  Identities=28%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...-.|+++|+-|||||+.+|-+++.|..
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            46778999999999999999999998874

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.47  E-value=0.023  Score=40.52  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p   59 (282)
T PRK13640         31 PRGSWTALIGHNGSGKSTISKLINGLLLP   59 (282)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence            46788999999999999999999877643

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.47  E-value=0.028  Score=37.24  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             EEecCCCCCccchhhhhhHHhHhhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      |.|.|.+|+|||+.+..+++.|...
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~~~   26 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALKAR   26 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            6788999999999999999988643

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK12608 transcription termination factor Rho; Provisional

Probab=94.46  E-value=0.035  Score=42.27  Aligned_cols=42  Identities=21%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             ccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         22 DLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        22 aia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..++...+.--.+.|.++|.|+.|+|||+.++.+.+.+..
T Consensus       118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            567777777777789999999999999999999998887654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=94.46  E-value=0.022  Score=44.81  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.7

Q ss_pred             CCCceEEecCCCCCccchhhh
Q psy17856         35 REDQSILCTGESGAGKTENTK   55 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k   55 (79)
                      .+.+.|.|+|.||||||+..+
T Consensus        30 ~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        30 PSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             cCCCEEEEECCCCCCHHHHHh
Confidence            578999999999999999998

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=94.45  E-value=0.018  Score=39.57  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+...+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~   52 (232)
T cd03300          24 KEGEFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46789999999999999999998876643

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=94.45  E-value=0.023  Score=38.29  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=20.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..++|.|.+|+|||...+.++..++.
T Consensus        39 ~h~li~G~tgsGKS~~l~~ll~~l~~   64 (205)
T PF01580_consen   39 PHLLIAGATGSGKSTLLRTLLLSLAL   64 (205)
T ss_dssp             -SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred             ceEEEEcCCCCCccHHHHHHHHHHHH
Confidence            36899999999999999998887775

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.45  E-value=0.028  Score=38.96  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         27 PKNSVTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            467899999999999999999987643

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=94.44  E-value=0.019  Score=43.64  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|||||+..+.+.-.+..
T Consensus        27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~p   55 (490)
T PRK10938         27 NAGDSWAFVGANGSGKSALARALAGELPL   55 (490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            56789999999999999999998876543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.43  E-value=0.019  Score=40.79  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|.+|+|||+..+.+...+...
T Consensus        31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~   60 (277)
T PRK13642         31 TKGEWVSIIGQNGSGKSTTARLIDGLFEEF   60 (277)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            568899999999999999999988766433

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.43  E-value=0.024  Score=40.81  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |.|.|.||||||+.++.+...|-
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhC
Confidence            67899999999999999887764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=94.43  E-value=0.026  Score=39.39  Aligned_cols=28  Identities=18%  Similarity=0.150  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        25 PPGSLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678899999999999999999876553

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14528 adenylate kinase; Provisional

Probab=94.42  E-value=0.03  Score=37.73  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.|+|.|.+|+|||+.++.+.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999987654

>KOG0922|consensus

Probab=94.42  E-value=0.042  Score=44.45  Aligned_cols=32  Identities=31%  Similarity=0.569  Sum_probs=23.7

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      -..||.+||.||+|||||+.   +-|||...+-+.
T Consensus        63 ve~nqvlIviGeTGsGKSTQ---ipQyL~eaG~~~   94 (674)
T KOG0922|consen   63 VEDNQVLIVIGETGSGKSTQ---IPQYLAEAGFAS   94 (674)
T ss_pred             HHHCCEEEEEcCCCCCcccc---HhHHHHhccccc
Confidence            35799999999999999986   556665444333

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=94.42  E-value=0.017  Score=42.81  Aligned_cols=29  Identities=24%  Similarity=0.235  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|+||||||+..+.+.-.+..
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p   54 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQ   54 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46789999999999999999998876543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=94.41  E-value=0.037  Score=38.95  Aligned_cols=29  Identities=17%  Similarity=0.314  Sum_probs=24.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ....++|.|++|+|||+.++.+.+.+...
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~   69 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKEM   69 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            34578999999999999999998877543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=94.41  E-value=0.027  Score=40.04  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+.
T Consensus        48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         48 YEGDVIGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4688899999999999999999886553

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=94.40  E-value=0.032  Score=40.19  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=23.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .|+|.|++|+|||..++.+.+.+...+
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g   86 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLG   86 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            589999999999999988888776543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.38  E-value=0.029  Score=39.00  Aligned_cols=27  Identities=19%  Similarity=0.211  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+...+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         30 PKNRVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            467889999999999999999987643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.37  E-value=0.028  Score=40.17  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.
T Consensus        63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         63 LSKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            56788999999999999999998764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=94.37  E-value=0.023  Score=35.38  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             EEecCCCCCccchhhhhhH--HhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVI--QYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l--~~l~~   63 (79)
                      |++.|.+|+|||+..+.+.  .+...
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~   27 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLAR   27 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceee
Confidence            6788999999999999998  44443

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=94.37  E-value=0.018  Score=45.39  Aligned_cols=30  Identities=23%  Similarity=0.468  Sum_probs=25.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+.+.|.|+||||||+.++.+...+...
T Consensus        40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~   69 (623)
T PRK10261         40 QRGETLAIVGESGSGKSVTALALMRLLEQA   69 (623)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence            467889999999999999999999877543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.36  E-value=0.029  Score=38.91  Aligned_cols=28  Identities=25%  Similarity=0.256  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+.++.+...+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         28 PERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678899999999999999999887554

>PRK08356 hypothetical protein; Provisional

Probab=94.36  E-value=0.022  Score=38.41  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=19.3

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|+|+|.+||||++.++.+.+
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999854

>PRK15453 phosphoribulokinase; Provisional

Probab=94.35  E-value=0.036  Score=40.87  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++.-.|.|+|-||||||+.++.+.+-|.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~   30 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR   30 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3455789999999999999998877664

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.35  E-value=0.028  Score=36.68  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +++|.|++|+|||..+..++...+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~   24 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGL   24 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999887776655

A related protein is found in archaea.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.34  E-value=0.027  Score=41.27  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=21.4

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |.|+|-||||||+.++.+.+.|..
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~   25 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAR   25 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999887753

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.34  E-value=0.019  Score=40.91  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=25.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+.+.|.|++|+|||+..+.+...+...
T Consensus        30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~   59 (283)
T PRK13636         30 KKGEVTAILGGNGAGKSTLFQNLNGILKPS   59 (283)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            467899999999999999999988766433

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=94.33  E-value=0.019  Score=44.86  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||+|||+..+.++..+...+
T Consensus       359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~  389 (585)
T TIGR01192       359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTV  389 (585)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHccCCCCCC
Confidence            5789999999999999999999988775443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.33  E-value=0.046  Score=37.15  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=27.5

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+....--.|.|+|-.|+|||+..+.+++.+.
T Consensus        14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4555556667788999999999999999988753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.32  E-value=0.049  Score=41.20  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=30.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG   71 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~   71 (79)
                      .+.+.++|.|..|+|||+.++.+.+.|-..+.+..|.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~  112 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGR  112 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCc
Confidence            3578899999999999999999999888776555553

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.31  E-value=0.019  Score=40.80  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+.+.|.|.+|+|||+..+.+...+...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~   60 (279)
T PRK13650         31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAE   60 (279)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            467889999999999999999998776433

>PRK09087 hypothetical protein; Validated

Probab=94.30  E-value=0.058  Score=37.68  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=24.0

Q ss_pred             HHHHHhHh--cCCCceEEecCCCCCccchhhhhhH
Q psy17856         26 GPDQVYLS--DREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        26 ~Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .||..+.+  ...+..++|.|.+|+|||..++.+.
T Consensus        31 ~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~   65 (226)
T PRK09087         31 AAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWR   65 (226)
T ss_pred             HHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHH
Confidence            35554433  2345569999999999999998765

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.30  E-value=0.021  Score=40.53  Aligned_cols=28  Identities=21%  Similarity=0.192  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|+|||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         29 PEGSKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            5678999999999999999999887654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=94.30  E-value=0.02  Score=45.33  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||+|||+..+.+...+....
T Consensus       481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~  511 (694)
T TIGR01846       481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH  511 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            5789999999999999999999988775443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=94.29  E-value=0.031  Score=37.07  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=24.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|+|.|-.|||||+.++.+.+.|..
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999998865

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=94.29  E-value=0.077  Score=42.23  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.....+.++|.|++|+|||+.++.+.....
T Consensus       168 ~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       168 AKVASPFPQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            334455678899999999999999999887653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=94.29  E-value=0.018  Score=44.58  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|+||+|||+..+.+..++...+
T Consensus       366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~  396 (555)
T TIGR01194       366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQE  396 (555)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            5788999999999999999999998775443

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.29  E-value=0.064  Score=42.69  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +...+-.++++|+|..|.|||+.++.+.+.|-|..
T Consensus        29 i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~   63 (584)
T PRK14952         29 LDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ   63 (584)
T ss_pred             HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            33446677899999999999999999999887654

>PRK10646 ADP-binding protein; Provisional

Probab=94.28  E-value=0.036  Score=37.26  Aligned_cols=28  Identities=32%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +....|++.|+-|+|||+.+|-+++.|.
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3455789999999999999999999885

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.28  E-value=0.033  Score=36.32  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.|+|+|-+|+|||+..+.+-+.|
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l   26 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL   26 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999987754

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=94.28  E-value=0.027  Score=38.56  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...++|+|++|+|||+..|.+..
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            36789999999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.28  E-value=0.019  Score=43.37  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|.||||||+..+.+...+...+
T Consensus        48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~   78 (382)
T TIGR03415        48 EEGEICVLMGLSGSGKSSLLRAVNGLNPVSR   78 (382)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence            3677899999999999999999988765443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK06761 hypothetical protein; Provisional

Probab=94.27  E-value=0.026  Score=41.22  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .-|+|+|.+|+|||+.++.+.+.|..
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            46899999999999999999988863

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=94.27  E-value=0.041  Score=39.20  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+....++++|++|.|||+.++.+.+.+
T Consensus        40 ~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         40 GRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3345667779999999999999887754

>PRK13947 shikimate kinase; Provisional

Probab=94.25  E-value=0.033  Score=36.18  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|.+|+|||+.++.+-+-|
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~l   25 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTL   25 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh
Confidence            48999999999999999887654

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=94.25  E-value=0.027  Score=41.06  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.1

Q ss_pred             CceEEecCCCCCccchhhhhhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .+-|+|+|.+|||||+.++.+-
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            4579999999999999998763

>PLN02348 phosphoribulokinase

Probab=94.24  E-value=0.051  Score=41.59  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +.--|-|.|.||||||+.++.+.+.|-.
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~   75 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFGG   75 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3445678999999999999999998853

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=94.24  E-value=0.031  Score=41.52  Aligned_cols=29  Identities=24%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.||+|||+..+.+.-.+..
T Consensus        30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p   58 (351)
T PRK11432         30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKP   58 (351)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            46788999999999999999988765543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=94.24  E-value=0.02  Score=45.14  Aligned_cols=28  Identities=21%  Similarity=0.493  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||||||+..+.++..+.
T Consensus       348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~  375 (623)
T PRK10261        348 WPGETLSLVGESGSGKSTTGRALLRLVE  375 (623)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4678899999999999999999987664

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.23  E-value=0.021  Score=40.66  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.+|+|||+..+.+...+..
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p   59 (279)
T PRK13635         31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLP   59 (279)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            46788999999999999999988866543

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=94.23  E-value=0.054  Score=36.87  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +|.+.++. ..++.++|.|..|+|||+..+.+.+.+..
T Consensus         8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~   44 (196)
T PF13604_consen    8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEA   44 (196)
T ss_dssp             HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45555554 45677889999999999999998887765

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.22  E-value=0.029  Score=36.91  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             EEecCCCCCccchhhhhhHHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~   60 (79)
                      |+|.|-+|||||+.++.+.+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888765

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=94.22  E-value=0.019  Score=43.53  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|.||||||+..+.+...+...+
T Consensus        52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s   82 (400)
T PRK10070         52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR   82 (400)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence            4678899999999999999999887664433

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=94.22  E-value=0.031  Score=40.08  Aligned_cols=27  Identities=33%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +-.|++.|.||||||..++.++.++..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence            346888899999999999999877643

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK02496 adk adenylate kinase; Provisional

Probab=94.22  E-value=0.032  Score=36.96  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|.+|||||+.++.+.+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999987654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.21  E-value=0.031  Score=38.74  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.+.|.|.+|||||+..+.+.-.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         27 EEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            46788999999999999999998753

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.20  E-value=0.056  Score=42.44  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=26.3

Q ss_pred             HHHHhHhcC-CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         27 PDQVYLSDR-EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        27 Ay~~m~~~~-~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...++... ..+.++|+|.+|+|||++.+.+.+.|-
T Consensus        34 wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   34 WLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             HHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            334444443 356678899999999999999887763

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=94.20  E-value=0.049  Score=38.49  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=32.9

Q ss_pred             cchHHHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         23 LTGGPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        23 ia~~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.|++|..|... ..+.+..+.|..|+||||..|.+-+.|.
T Consensus        17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG   57 (231)
T PF12774_consen   17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG   57 (231)
T ss_dssp             HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence            468888877665 6678889999999999999998876553

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.18  E-value=0.022  Score=40.83  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++.+.+.|.|.+|+|||+..+.+...+..
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (290)
T PRK13634         31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQP   59 (290)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            56789999999999999999998876543

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=94.18  E-value=0.023  Score=39.24  Aligned_cols=28  Identities=14%  Similarity=0.368  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~   50 (235)
T cd03299          23 ERGDYFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4688999999999999999988766543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=94.16  E-value=0.034  Score=39.30  Aligned_cols=27  Identities=19%  Similarity=0.219  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+
T Consensus        49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~   75 (272)
T PRK14236         49 PKNRVTAFIGPSGCGKSTLLRCFNRMN   75 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            578899999999999999999987654

>PHA00729 NTP-binding motif containing protein

Probab=94.16  E-value=0.057  Score=38.39  Aligned_cols=27  Identities=30%  Similarity=0.274  Sum_probs=23.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .-..|+|+|.+|+|||..+..+...+.
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999887654

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=94.16  E-value=0.039  Score=39.88  Aligned_cols=43  Identities=12%  Similarity=0.050  Sum_probs=33.0

Q ss_pred             ccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         22 DLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        22 aia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..++.....++..+.-+.++|.|.+|+|||+..+.+...+...
T Consensus        96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~  138 (270)
T TIGR02858        96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG  138 (270)
T ss_pred             CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence            3455555666655555899999999999999999998877643

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF13173 AAA_14: AAA domain

Probab=94.14  E-value=0.041  Score=34.65  Aligned_cols=26  Identities=35%  Similarity=0.448  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++.++|.|..|+|||+..+.+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            46789999999999999999997765

>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=94.14  E-value=0.03  Score=38.43  Aligned_cols=23  Identities=39%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...|+|+|+||+|||+++--+++
T Consensus        18 G~GVLi~G~SG~GKS~lAl~Li~   40 (171)
T PF07475_consen   18 GVGVLITGPSGIGKSELALELIK   40 (171)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999998866664

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=94.14  E-value=0.037  Score=37.15  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=21.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..+..|+|.||+|+||+..++.+-.
T Consensus        20 ~~~~pVlI~GE~GtGK~~lA~~IH~   44 (168)
T PF00158_consen   20 SSDLPVLITGETGTGKELLARAIHN   44 (168)
T ss_dssp             TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence            5568899999999999999998876

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=94.12  E-value=0.023  Score=40.40  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   62 (280)
T PRK13633         34 KKGEFLVILGRNGSGKSTIAKHMNALLIP   62 (280)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46788999999999999999988866543

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.11  E-value=0.078  Score=41.85  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..++-.+.++|+|+.|.|||+.++.+.+.|.|..
T Consensus        32 i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~   66 (576)
T PRK14965         32 IDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQ   66 (576)
T ss_pred             HHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCC
Confidence            34445678899999999999999999999987654

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=94.09  E-value=0.042  Score=38.99  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.++|+|.+|.|||..++.+.+.+
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~   54 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            445779999999999999999887765

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=94.07  E-value=0.076  Score=42.83  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             HHHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         27 PDQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        27 Ay~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..++++. ++-.+.++|+|..|.|||+.++.+.+.|-|.
T Consensus        27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            4444444 4667788999999999999999999999875

>PRK14532 adenylate kinase; Provisional

Probab=94.07  E-value=0.035  Score=36.78  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|++.|-+|||||+.++.+.+.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999887654

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=94.07  E-value=0.06  Score=39.79  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.+-.|+|.|-+|+|||+.++.+...|
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999988877

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.05  E-value=0.036  Score=40.01  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|+|||+..+.+.-.+
T Consensus        69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         69 PEKSVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            578889999999999999999988654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=94.05  E-value=0.04  Score=43.16  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=27.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      ....+-+.||||||||..+..+|+.|..-+...
T Consensus        35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~   67 (534)
T COG4172          35 AGETLALVGESGSGKSVTALSILGLLPSPAAAH   67 (534)
T ss_pred             CCCEEEEEecCCCCccHHHHHHHHhcCCCcccC
Confidence            455688899999999999999999998744433

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=94.05  E-value=0.034  Score=41.38  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.||||||+..+.+.-.+..
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p   55 (369)
T PRK11000         27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDI   55 (369)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            45678999999999999999998876543

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=94.05  E-value=0.04  Score=36.78  Aligned_cols=27  Identities=37%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.|.|+|.+|+|||+.++.++..|...
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~   28 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSAR   28 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            357899999999999999999987643

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK13946 shikimate kinase; Provisional

Probab=94.04  E-value=0.04  Score=36.85  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|++.|-+|||||+..+.+-+.|
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999987765

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=94.02  E-value=0.098  Score=38.83  Aligned_cols=41  Identities=17%  Similarity=0.236  Sum_probs=33.1

Q ss_pred             HHHHHhH----hcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         26 GPDQVYL----SDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        26 ~Ay~~m~----~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      .+|..+.    +++-.++++|+|..|.||+..++.+.++|.|...
T Consensus         9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~   53 (325)
T PRK06871          9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTP   53 (325)
T ss_pred             HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence            4454444    3467899999999999999999999999998653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.02  E-value=0.024  Score=40.19  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (274)
T PRK13644         26 KKGEYIGIIGKNGSGKSTLALHLNGLLR   53 (274)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4688999999999999999999887654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.01  E-value=0.029  Score=39.50  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +....|.|+|.||+||++..|.+.......+
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~   57 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLISPTS   57 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhccCCCC
Confidence            3466799999999999999888776554433

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.00  E-value=0.023  Score=40.55  Aligned_cols=29  Identities=21%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p   59 (287)
T PRK13641         31 EEGSFVALVGHTGSGKSTLMQHFNALLKP   59 (287)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788999999999999999998876543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=94.00  E-value=0.024  Score=41.87  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.+|||||+..+.+.-.+..
T Consensus        21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p   49 (354)
T TIGR02142        21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRP   49 (354)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45678999999999999999998876543

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.99  E-value=0.024  Score=40.51  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+..
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p   59 (287)
T PRK13637         31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKP   59 (287)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            46788999999999999999998876543

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=93.98  E-value=0.028  Score=40.10  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=27.7

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..|..-.+.|.++|.|++|+|||+.++.+...+.
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            3445557899999999999999999998886554

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00101 ureG urease accessory protein UreG

Probab=93.97  E-value=0.035  Score=38.03  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|.|+|..|+|||+..+.+++.+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            578999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=93.96  E-value=0.058  Score=38.83  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+-.+.++|+|+.|.|||+.++.+.+.|.+.
T Consensus        32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~   63 (355)
T TIGR02397        32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (355)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34556789999999999999999999888654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.96  E-value=0.036  Score=39.62  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.+|+|||+..+.+.-.+.
T Consensus        30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~   57 (288)
T PRK13643         30 KKGSYTALIGHTGSGKSTLLQHLNGLLQ   57 (288)
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4678999999999999999998886554

>PF13245 AAA_19: Part of AAA domain

Probab=93.95  E-value=0.071  Score=31.49  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+...+|.|-.|+|||.....++.++..
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~   36 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELLA   36 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4566777999999999877777776663

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=93.95  E-value=0.025  Score=41.08  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|.+|||||+..+.+.-.+...
T Consensus        31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~   60 (305)
T PRK13651         31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPD   60 (305)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            467889999999999999999988766443

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=93.94  E-value=0.044  Score=37.00  Aligned_cols=29  Identities=17%  Similarity=0.284  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.++|.|.+|.|||..+..+...++.
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~   73 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIR   73 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence            45788999999999999999888887765

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.94  E-value=0.052  Score=40.69  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             HHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         27 PDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        27 Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+.++.. +-.++++|+|..|.|||+.++.+.+.|.+.
T Consensus        27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            44555554 567889999999999999999999998774

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.93  E-value=0.059  Score=39.41  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=22.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +....|-|.|-+|||||+.++.+...+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4556788999999999999987766654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=93.92  E-value=0.026  Score=40.88  Aligned_cols=32  Identities=25%  Similarity=0.218  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      ++.+.+.|.|.+|||||+..|.++..+...++
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G   60 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG   60 (293)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            45678899999999999999999887765443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=93.91  E-value=0.025  Score=40.98  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|.+|||||+..+.+.-.+...+
T Consensus        31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~   61 (306)
T PRK13537         31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPDA   61 (306)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence            4678899999999999999999987665433

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=93.90  E-value=0.076  Score=35.87  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...++|+|.+|+|||+..+.+..
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            36799999999999999999873

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=93.90  E-value=0.025  Score=42.31  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.++|.|.||||||+..+.+...+...+
T Consensus        17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~   47 (363)
T TIGR01186        17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA   47 (363)
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCCCCc
Confidence            4678899999999999999999887765433

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=93.89  E-value=0.024  Score=42.08  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+.+.|.|+||+|||+..+.+.-.+...+
T Consensus        28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~   58 (356)
T PRK11650         28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITS   58 (356)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCCCCCc
Confidence            3567889999999999999999887654433

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=93.89  E-value=0.044  Score=39.42  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ..++.++|.|++|+|||...+.+++-
T Consensus        31 ~~~~pvLl~G~~GtGKT~li~~~l~~   56 (272)
T PF12775_consen   31 SNGRPVLLVGPSGTGKTSLIQNFLSS   56 (272)
T ss_dssp             HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             HcCCcEEEECCCCCchhHHHHhhhcc
Confidence            35778999999999999999887753

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=93.88  E-value=0.053  Score=38.99  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=24.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +...|+|.|.+|+|||+++..+..++...
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            35688999999999999999998888654

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=93.87  E-value=0.037  Score=47.87  Aligned_cols=29  Identities=17%  Similarity=0.425  Sum_probs=27.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +..+++.|.|+||||||+..+.+++++..
T Consensus      1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            67899999999999999999999999875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=93.85  E-value=0.04  Score=42.25  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        24 EEGEVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            467889999999999999999998865

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=93.85  E-value=0.046  Score=37.81  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |.|+|.+|||||+.++.+-+++-
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhC
Confidence            78999999999999999887764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=93.85  E-value=0.024  Score=43.10  Aligned_cols=30  Identities=27%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+.+.|.|++|||||+..+.+...+...
T Consensus        22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~   51 (491)
T PRK10982         22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD   51 (491)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence            467889999999999999999988766433

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=93.84  E-value=0.055  Score=36.35  Aligned_cols=27  Identities=22%  Similarity=0.167  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.+.|+|++|+|||..+..++...+
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~   37 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAA   37 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577889999999999999876655444

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.83  E-value=0.026  Score=41.72  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=22.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..-+++.|.||||||+..|.+-+.+-..+
T Consensus        27 gef~vliGpSGsGKTTtLkMINrLiept~   55 (309)
T COG1125          27 GEFLVLIGPSGSGKTTTLKMINRLIEPTS   55 (309)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence            34467789999999999999887665444

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=93.81  E-value=0.029  Score=43.56  Aligned_cols=28  Identities=21%  Similarity=0.122  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~   58 (556)
T PRK11819         31 FPGAKIGVLGLNGAGKSTLLRIMAGVDK   58 (556)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678899999999999999999887654

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.81  E-value=0.052  Score=39.46  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-+....|+|+|.+|||||+..+.+.+.|
T Consensus       128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        128 RRAARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            334678899999999999999999987543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.80  E-value=0.032  Score=41.83  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=18.9

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .--++|.|.||||||+..+.+--
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34578999999999999887654

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.79  E-value=0.081  Score=36.67  Aligned_cols=39  Identities=15%  Similarity=0.144  Sum_probs=27.3

Q ss_pred             hHHHHHhHhcCC--CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         25 GGPDQVYLSDRE--DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        25 ~~Ay~~m~~~~~--~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+-+.+.....  .+.++|.|.+|+|||...+-+...+..
T Consensus        20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~   60 (219)
T PF00308_consen   20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK   60 (219)
T ss_dssp             HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            344445544422  356899999999999998888776654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>smart00072 GuKc Guanylate kinase homologues

Probab=93.77  E-value=0.038  Score=36.91  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|+|.||+||++..+.+++.+
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48999999999999999998774

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.77  E-value=0.045  Score=38.39  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   58 (261)
T PRK14258         31 YQSKVTAIIGPSGCGKSTFLKCLNRMNE   58 (261)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence            5788899999999999999999887765

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=93.76  E-value=0.051  Score=36.73  Aligned_cols=28  Identities=18%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ......|++.|-+|||||+....++..+
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            3567889999999999999999988765

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.74  E-value=0.038  Score=33.56  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||+....++.
T Consensus         3 ki~~~G~~~~GKstl~~~l~~   23 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLG   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999877764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN02200 adenylate kinase family protein

Probab=93.73  E-value=0.054  Score=38.07  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-.|+|.|.+|||||+.++.+.+.+
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34678999999999999999887654

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=93.72  E-value=0.03  Score=40.32  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|+|||+.++.+.-.+
T Consensus        61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~   87 (282)
T cd03291          61 EKGEMLAITGSTGSGKTSLLMLILGEL   87 (282)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567889999999999999999887654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13975 thymidylate kinase; Provisional

Probab=93.72  E-value=0.044  Score=36.33  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .-|+|.|-.|+|||+.++.+-+.|-
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999988875

>TIGR01351 adk adenylate kinases

Probab=93.72  E-value=0.041  Score=37.44  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.2

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|.+|||||+.++.+.+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999887643

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=93.72  E-value=0.039  Score=42.21  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|++|||||+..|.+.-.+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (506)
T PRK13549         29 RAGEIVSLCGENGAGKSTLMKVLSGVYP   56 (506)
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999887654

>PRK13949 shikimate kinase; Provisional

Probab=93.71  E-value=0.046  Score=36.44  Aligned_cols=23  Identities=39%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|..|||||+..+.+.+.|
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999877654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.70  E-value=0.082  Score=41.25  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+-.+.++|+|..|+|||+.++.+.+.+.+..
T Consensus        31 ~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~   64 (504)
T PRK14963         31 RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG   64 (504)
T ss_pred             HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            3345677889999999999999999999887643

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=93.69  E-value=0.082  Score=34.98  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=28.2

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      ....+-.++++|.|..|.||++.+..+.+.+.+....
T Consensus        13 ~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~   49 (162)
T PF13177_consen   13 IKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN   49 (162)
T ss_dssp             HHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred             HHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence            3445778999999999999999999999988876544

...

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=93.69  E-value=0.098  Score=41.37  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=28.8

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+-.++++|+|+.|.|||+.++.+.+.|.+..
T Consensus        33 ~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~   66 (563)
T PRK06647         33 ESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN   66 (563)
T ss_pred             HcCCCCeEEEEECCCCCCHHHHHHHHHHhhcccc
Confidence            3446677899999999999999999999987653

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=93.69  E-value=0.085  Score=41.84  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      |.+++....+|...  ...|+|.|..|+|||+.++.+-.|++..+
T Consensus       249 Y~L~dkl~eRL~er--aeGILIAG~PGaGKsTFaqAlAefy~~~G  291 (604)
T COG1855         249 YGLSDKLKERLEER--AEGILIAGAPGAGKSTFAQALAEFYASQG  291 (604)
T ss_pred             cCCCHHHHHHHHhh--hcceEEecCCCCChhHHHHHHHHHHHhcC
Confidence            78899998888874  44699999999999999999999998654

>cd04163 Era Era subfamily

Probab=93.66  E-value=0.045  Score=33.84  Aligned_cols=24  Identities=13%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...|++.|.+|+|||+.++.++..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            356899999999999999887653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=93.64  E-value=0.051  Score=42.95  Aligned_cols=29  Identities=31%  Similarity=0.441  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++...|+|+|.+|||||+.++.+.+.|-.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~  418 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLME  418 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence            45568899999999999999999887753

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.63  E-value=0.051  Score=37.06  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|-+|||||+.++.+.+.+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999887655

>PRK12377 putative replication protein; Provisional

Probab=93.61  E-value=0.069  Score=38.14  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=24.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.++|+|.+|+|||..+..+...+..
T Consensus       100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~  127 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA  127 (248)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3478999999999999999999988874

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.59  E-value=0.059  Score=45.15  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             HHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         28 DQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        28 y~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .++++. .+-.+++||+|+.|.|||+.++.+.+.|-+.
T Consensus        28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            444444 4667788999999999999999999998764

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=93.59  E-value=0.072  Score=42.48  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..++..++++|+|..|.|||+.++.+.+.|.|..
T Consensus        41 ~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~   74 (598)
T PRK09111         41 ETGRIAQAFMLTGVRGVGKTTTARILARALNYEG   74 (598)
T ss_pred             HcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence            3456789999999999999999999999987754

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=93.57  E-value=0.041  Score=39.10  Aligned_cols=27  Identities=30%  Similarity=0.334  Sum_probs=21.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..-+.++|.||||||+..|.++.-.-
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            344568899999999999999886443

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=93.56  E-value=0.048  Score=39.33  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      -|+|+|-.|||||+.++.+.++|..
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~   27 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEE   27 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence            3799999999999999999999876

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=93.56  E-value=0.031  Score=42.72  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|||||+..+.+.-.+..
T Consensus        28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p   56 (501)
T PRK10762         28 YPGRVMALVGENGAGKSTMMKVLTGIYTR   56 (501)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45788999999999999999998876643

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=93.56  E-value=0.064  Score=30.55  Aligned_cols=24  Identities=38%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |+++|..|+|||+.+..+...|..
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~   25 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK   25 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678899999999999999999875

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=93.55  E-value=0.031  Score=41.46  Aligned_cols=29  Identities=28%  Similarity=0.142  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.||||||+..+.+...+..
T Consensus        29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p   57 (343)
T TIGR02314        29 PAGQIYGVIGASGAGKSTLIRCVNLLERP   57 (343)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788999999999999999998876543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		2e-14
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		3e-13
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		3e-13
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		3e-13
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		3e-13
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		4e-13
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		9e-13
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		2e-11
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		2e-10
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		7e-10
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		7e-10
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		8e-10
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		8e-10
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		8e-10
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		8e-10
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		8e-10
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		8e-10
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		8e-10
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		8e-10
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		8e-10
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		8e-10
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		8e-10
2y9e_X	758	Structural Basis For The Allosteric Interference Of		8e-10
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		8e-10
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		8e-10
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		8e-10
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		8e-10
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		8e-10
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		8e-10
2y0r_X	758	Structural Basis For The Allosteric Interference Of		8e-10
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		8e-10
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		8e-10
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		8e-10
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		8e-10
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		9e-10
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		9e-10
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		1e-09
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		2e-09
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		2e-09
1b7t_A	835	Myosin Digested By Papain Length = 835		2e-09
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		2e-09
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		2e-09
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		8e-09
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		3e-05
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		3e-05
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		2e-04
2x51_A	789	M6 Delta Insert1 Length = 789		2e-04
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		2e-04
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		2e-04
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		2e-04
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		2e-04
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		2e-04
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		2e-04
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		2e-04
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		2e-04
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		2e-04
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		3e-04

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
Query: 23  LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG 71
           +T G  +  L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S PKG
Sbjct: 132 VTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASS-PKG 179

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+
Sbjct: 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+
Sbjct: 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+
Sbjct: 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+
Sbjct: 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+
Sbjct: 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+
Sbjct: 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/39 (79%), Positives = 33/39 (84%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           Q  L DRE+QS+L TGESGAGKTENTKKVIQY A VAAS
Sbjct: 161 QYMLQDRENQSMLITGESGAGKTENTKKVIQYFALVAAS 199

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           Q  ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K +S
Sbjct: 161 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKTS 205

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 33/42 (78%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70
           Q  L+DRE+QSIL TGESGAGKT NT +VIQY A +AAS  K
Sbjct: 161 QFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEK 202

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 166 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 207

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 33/42 (78%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK 70
           Q  L+DRE+QSIL TGESGAGKT NT +VIQY A +AAS  K
Sbjct: 164 QFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEK 205

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 166 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 207

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 178 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 219

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/38 (73%), Positives = 32/38 (84%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA 66
           Q  L+DRE+QSIL TGESGAGKT NTK+VIQY A +AA
Sbjct: 163 QYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAA 200

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 178 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 219

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 166 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 207

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 166 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 207

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 166 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 207

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 166 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 207

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 178 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 219

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 178 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 219

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 32/42 (76%)
Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGS 208

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           Q  ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A
Sbjct: 161 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA 207

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           Q  ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A
Sbjct: 161 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA 207

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           Q  ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A
Sbjct: 161 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA 207

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           Q  ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A
Sbjct: 157 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA 203

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTA 75
           Q  ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A
Sbjct: 156 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA 202

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
           Q  ++DRE+QS L TGESGAGKTE+TKKVI Y A VAA+
Sbjct: 161 QNMVTDRENQSCLITGESGAGKTESTKKVIMYFARVAAN 199

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 35  REDQSILCTGESGAGKTENTKKVIQYLAYVAASK-PKG 71
           +E+Q ++ +GESGAGKTE +KK++Q+L +V++++ P G
Sbjct: 92  QENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 129

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 35  REDQSILCTGESGAGKTENTKKVIQYLAYVAASK-PKG 71
           +E+Q ++ +GESGAGKTE +KK++Q+L +V++++ P G
Sbjct: 92  QENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 129

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 145 QSIIVSGESGAGKTENTKFVLRYL 168

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 145 QSIIVSGESGAGKTENTKFVLRYL 168

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 144 QSIIVSGESGAGKTENTKFVLRYL 167

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 144 QSIIVSGESGAGKTENTKFVLRYL 167

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 144 QSIIVSGESGAGKTENTKFVLRYL 167

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 144 QSIIVSGESGAGKTENTKFVLRYL 167

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 144 QSIIVSGESGAGKTENTKFVLRYL 167

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 154 QSIIVSGESGAGKTENTKFVLRYL 177

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 154 QSIIVSGESGAGKTENTKFVLRYL 177

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 142 QSIIVSGESGAGKTENTKFVLRYL 165

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 141 QSIIVSGESGAGKTENTKFVLRYL 164

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 38  QSILCTGESGAGKTENTKKVIQYL 61
           QSI+ +GESGAGKTENTK V++YL
Sbjct: 145 QSIIVSGESGAGKTENTKFVLRYL 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-22
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	8e-22
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	2e-21
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-21
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	5e-21
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	6e-21
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	7e-20
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	1e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-19
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-12

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 87.8 bits (218), Expect = 2e-22
 Identities = 34/48 (70%), Positives = 36/48 (75%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
           L DREDQSILCTGESGAGKTENTKKVIQYLA+VA+S           E
Sbjct: 141 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGE 188

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 86.2 bits (214), Expect = 8e-22
 Identities = 29/48 (60%), Positives = 34/48 (70%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
           ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A   +
Sbjct: 164 VTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKK 211

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score = 85.0 bits (211), Expect = 2e-21
 Identities = 27/48 (56%), Positives = 33/48 (68%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
           L+DRE+QSIL TGESGAGKT NTK+VIQY A +AA   +        +
Sbjct: 166 LTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGK 213

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 84.3 bits (209), Expect = 4e-21
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S 
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 209

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score = 83.8 bits (208), Expect = 5e-21
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
             D  +QSI+ +GESGAGKT + K  ++Y A V+ S  + +
Sbjct: 151 ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEAN 191

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score = 83.4 bits (207), Expect = 6e-21
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S 
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 209

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score = 80.7 bits (200), Expect = 7e-20
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 28  DQVY---LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           +  Y      +E+Q ++ +GESGAGKTE +KK++Q+L +V++++      
Sbjct: 82  NDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGER 131

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS 67
              +  QSI+ +GESGAGKTENTK V++YL     +
Sbjct: 135 KVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGT 170

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.0 bits (192), Expect = 6e-19
 Identities = 34/51 (66%), Positives = 37/51 (72%)

Query: 29  QVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
           +  L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T+    
Sbjct: 161 RSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQG 211

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.8 bits (140), Expect = 9e-12
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
             D  +QSI+ +GESGAGKT + K  ++Y A V+ S  + +
Sbjct: 151 ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEAN 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	99.79
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	99.78
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	99.78
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	99.78
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	99.77
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	99.77
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	99.77
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.77
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	99.77
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	99.76
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.75
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.16
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.11
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.0
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.94
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.84
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.78
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.76
3bos_A	242	Putative DNA replication factor; P-loop containing	96.73
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.71
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.69
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.65
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.65
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.62
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.57
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.52
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.51
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.51
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.5
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.49
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.48
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.45
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.45
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.42
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.41
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.41
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.41
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.39
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.35
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.35
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.33
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.3
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.28
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.24
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.24
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.22
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.21
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.17
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.14
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.11
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.11
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.09
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.09
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.08
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.07
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.07
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.05
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.04
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.02
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.01
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.01
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.0
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.0
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.98
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.97
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.97
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.97
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.96
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.95
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.92
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.92
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.92
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.92
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.9
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.9
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.9
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.89
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.87
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.86
1via_A	175	Shikimate kinase; structural genomics, transferase	95.84
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.84
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.84
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.84
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.83
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.82
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.81
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.81
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.81
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.8
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.8
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.79
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.78
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.78
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.76
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.76
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.76
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.76
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.75
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.75
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.75
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.74
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.73
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.73
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.72
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.68
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.66
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.63
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.62
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.62
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.61
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.6
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.6
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.59
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.58
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.57
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.55
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.55
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.55
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.54
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.51
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.5
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.49
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.49
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.49
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.47
1g6h_A	257	High-affinity branched-chain amino acid transport	95.47
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.46
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.45
2og2_A	359	Putative signal recognition particle receptor; nuc	95.45
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.45
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.42
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.42
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.42
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.41
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.41
3co5_A	143	Putative two-component system transcriptional RES	95.39
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.38
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.38
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.37
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.36
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.35
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.35
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.34
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.34
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.34
3pvs_A	447	Replication-associated recombination protein A; ma	95.31
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.3
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.3
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.28
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.25
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.22
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.2
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.2
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.19
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.18
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.16
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.16
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.16
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.15
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.14
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.13
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.13
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.12
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.12
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.07
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.06
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.04
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.96
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.96
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.94
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	94.91
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.91
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.91
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.89
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.88
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.82
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.82
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.8
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.79
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.77
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.76
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.73
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.7
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.7
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.69
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.69
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.68
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.64
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.62
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.59
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.58
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.58
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.56
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.56
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.55
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.54
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.51
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.51
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.48
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.43
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.43
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.41
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.41
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.41
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.37
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.36
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.35
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.33
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.33
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.32
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.3
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.28
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.27
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.27
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.25
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.25
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.19
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.17
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	94.17
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.16
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.15
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.14
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.14
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.13
2qgz_A	308	Helicase loader, putative primosome component; str	94.08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.03
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.02
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.01
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.99
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	93.97
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.96
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	93.94
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.93
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.88
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.81
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.8
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.8
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.78
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.77
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.75
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.75
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.74
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.68
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.68
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.67
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.63
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	93.61
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.6
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.59
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.52
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.52
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.51
2fna_A	357	Conserved hypothetical protein; structural genomic	93.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.47
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.47
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.42
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.41
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.37
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.37
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	93.37
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.34
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.31
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.24
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.24
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.13
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.06
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.0
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	93.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	92.99
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.87
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	92.85
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	92.81
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.8
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.79
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.77
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.73
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.72
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	92.71
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.65
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.64
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.63
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.63
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.59
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.56
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.54
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.53
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.51
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.5
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.43
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	92.39
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.38
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	92.37
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.35
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.34
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.3
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.25
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.23
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.2
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.18
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.18
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.17
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	92.15
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.13
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.1
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.04
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.04
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.03
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	92.03
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.01
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.97
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	91.95
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.94
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.93
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.91
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	91.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.87
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	91.86
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.83
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.77
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	91.75
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	91.74
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	91.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.71
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.71
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.64
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.63
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.63
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.63
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	91.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.57
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.57
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.55
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.54
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.53
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	91.52
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.51
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	91.49
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	91.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	91.46
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	91.45
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.45
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.42
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.39
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.38
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	91.38
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	91.35
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.33
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	91.33
2r44_A	331	Uncharacterized protein; putative ATPase, structur	91.3
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.28
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	91.28
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	91.27
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	91.25
1nrj_B	218	SR-beta, signal recognition particle receptor beta	91.23
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.15
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.14
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.13
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.05
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	91.0
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	90.89
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.88
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	90.87
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.85
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	90.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	90.8
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	90.8
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	90.76
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.76
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	90.75
1tue_A	212	Replication protein E1; helicase, replication, E1E	90.75
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.71
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	90.7
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.69
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	90.68
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.67
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	90.66
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	90.65
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	90.63
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.63
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	90.49
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	90.46
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.45
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.43
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	90.41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.35
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	90.34
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	90.31
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.24
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.18
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.13
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.12
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.08
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.08
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.07
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.03
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.01
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	89.98
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	89.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	89.95
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	89.91
2r6a_A	454	DNAB helicase, replicative helicase; replication,	89.91
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	89.89
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.85
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	89.83
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	89.8
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	89.77
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	89.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	89.75
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	89.7
1e69_A	322	Chromosome segregation SMC protein; structural mai	89.61
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	89.61
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	89.54
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	89.45
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	89.4
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	89.37
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	89.32
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	89.3
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	89.3
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	89.28
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	89.27
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	89.24
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.12
2xxa_A	433	Signal recognition particle protein; protein trans	89.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	89.07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	89.03
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	89.0
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	88.98
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	88.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	88.9
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.75
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	88.74
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	88.7
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	88.61
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	88.56
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	88.42
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	88.29
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	88.22
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	88.21
2z43_A	324	DNA repair and recombination protein RADA; archaea	88.16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	88.15
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	88.07
3ice_A	422	Transcription termination factor RHO; transcriptio	88.03
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	88.01
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	87.95
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	87.88
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	87.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	87.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	87.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	87.82
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	87.57
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	87.55
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	87.53
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	87.53
1u94_A	356	RECA protein, recombinase A; homologous recombinat	87.42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.3
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	87.3
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	87.27
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	87.26
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	87.13
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	87.12

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=99.79  E-value=4.1e-20  Score=146.50  Aligned_cols=65  Identities=49%  Similarity=0.622  Sum_probs=58.3

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK   70 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~   70 (79)
                      .+.+|+.+.  ..||||   |++|++||+.|+..++||||||+|||||||||++|++|+||+.++++..+
T Consensus       138 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~  204 (783)
T 4db1_A          138 VVAAYRGKKRSEAPPHI---FSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDR  204 (783)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC
T ss_pred             HHHHhcCCCcCCCCchh---hHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCc
Confidence            356787644  579999   99999999999999999999999999999999999999999999876643

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=99.78  E-value=5.6e-20  Score=146.49  Aligned_cols=66  Identities=47%  Similarity=0.541  Sum_probs=58.8

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG   71 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~   71 (79)
                      .+.+|+.+.  ..||||   |++|++||++|+..++||||||+|||||||||++|++|+||+.++++..++
T Consensus       136 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~  203 (837)
T 1kk8_A          136 VIAKYRGKRKTEIPPHL---FSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKK  203 (837)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHhcCCCcCCCCCcH---HHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcc
Confidence            356787654  479999   999999999999999999999999999999999999999999999776543

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=99.78  E-value=6.2e-20  Score=145.30  Aligned_cols=65  Identities=46%  Similarity=0.562  Sum_probs=56.8

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK   70 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~   70 (79)
                      .+.+|+.+.  ..||||   |++|++||++|+..++||||||+|||||||||++|++|+||+.++++..+
T Consensus       139 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~  205 (770)
T 1w9i_A          139 MVDIFKGRRRNEVAPHI---FAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA  205 (770)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHhcCCCcCCCCccH---HHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCC
Confidence            356787654  479999   99999999999999999999999999999999999999999999976543

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=99.78  E-value=1.2e-19  Score=146.37  Aligned_cols=66  Identities=56%  Similarity=0.684  Sum_probs=58.8

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG   71 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~   71 (79)
                      .+.+|+.+.  ..||||   |+||++||++|+..++||||||+|||||||||++|++|+||+.++++..++
T Consensus       113 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~  180 (995)
T 2ycu_A          113 IVEMYRGKKRHEVPPHV---YAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGR  180 (995)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHSCCSSSC
T ss_pred             HHHHhcCCccCCCCchH---HHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhcccCCcc
Confidence            356787654  479999   999999999999999999999999999999999999999999999776533

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=99.77  E-value=1e-19  Score=144.32  Aligned_cols=63  Identities=35%  Similarity=0.431  Sum_probs=56.9

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      .+.+|+.+.  ..||||   |++|++||++|+..++||||||+|||||||||++|++|+||+.++++.
T Consensus       123 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~  187 (795)
T 1w7j_A          123 IINAYSGQNMGDMDPHI---FAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSA  187 (795)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHcCCCccCCCccH---hHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCC
Confidence            356787654  479999   999999999999999999999999999999999999999999988654

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=99.77  E-value=1.1e-19  Score=142.62  Aligned_cols=61  Identities=33%  Similarity=0.524  Sum_probs=55.8

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      .+.+|+.+.  ..||||   |++|++||++|+..++||||||+|||||||||++|++|+||+.+++
T Consensus        61 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~  123 (697)
T 1lkx_A           61 DIKAYNGRYKYEMPPHM---YALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSS  123 (697)
T ss_dssp             HHHHHSSCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhCCCCCCCCchH---HHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcC
Confidence            356777654  479999   9999999999999999999999999999999999999999999986

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=99.77  E-value=1.5e-19  Score=146.02  Aligned_cols=65  Identities=46%  Similarity=0.562  Sum_probs=58.6

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK   70 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~   70 (79)
                      .+.+|+.+.  ..||||   |+||++||++|+..++||||||+|||||||||++|++|+||+.++++..+
T Consensus       139 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~  205 (1010)
T 1g8x_A          139 MVDIFKGRRRNEVAPHI---FAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA  205 (1010)
T ss_dssp             HHHHHTTCCTTTSCCCH---HHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHhcCCCccCCCccH---HHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCC
Confidence            356787654  479999   99999999999999999999999999999999999999999999976654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.77  E-value=1.8e-19  Score=146.41  Aligned_cols=65  Identities=55%  Similarity=0.673  Sum_probs=58.3

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK   70 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~   70 (79)
                      .+.+|+.+.  ..||||   |+||+.||++|+..++||||||+||||||||+++|++|+||+.++++..+
T Consensus       136 ~~~~y~~~~~~~~~PHi---~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~  202 (1184)
T 1i84_S          136 IIDMYKGKKRHEMPPHI---YAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKG  202 (1184)
T ss_dssp             HHHHHSSCCSSSSCCCH---HHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHhcCcccccCCccH---hhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCc
Confidence            356787654  479999   99999999999999999999999999999999999999999999977543

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=99.77  E-value=1.8e-19  Score=142.81  Aligned_cols=62  Identities=35%  Similarity=0.387  Sum_probs=55.5

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAAS   67 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~   67 (79)
                      .+.+|+.+.  ..||||   |++|++||++|+..++||||||+|||||||||++|++|+||+..+++
T Consensus       107 ~~~~Y~g~~~~~~pPHi---faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~  170 (784)
T 2v26_A          107 TIKSYQGKSLGTMPPHV---FAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGT  170 (784)
T ss_dssp             HHHHHTTCCTTSSCSCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhCCCcccCCchH---HHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhhcCC
Confidence            356787654  479999   99999999999999999999999999999999999999999988754

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=99.76  E-value=1.9e-19  Score=146.09  Aligned_cols=63  Identities=35%  Similarity=0.375  Sum_probs=56.5

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      .+.+|+.+.  +.||||   |+||++||++|+..++||||||+|||||||||++|++|+||+..+++.
T Consensus       111 ~~~~Y~g~~~~~lpPHI---faiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~~~~  175 (1052)
T 4anj_A          111 TIKSYQGKSLGTMPPHV---FAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG  175 (1052)
T ss_dssp             HHHHHTTCCBTTBCSCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHhcCCCCCCCCCcH---HHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhcCCC
Confidence            356787654  478999   999999999999999999999999999999999999999999988654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.75  E-value=3.7e-19  Score=144.46  Aligned_cols=63  Identities=35%  Similarity=0.431  Sum_probs=56.8

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      .+.+|+...  ..||||   |+||++||++|+..++||||||+|||||||||++|++|+||+.++++.
T Consensus       123 ~~~~Y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~  187 (1080)
T 2dfs_A          123 IINAYSGQNMGDMDPHI---FAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSA  187 (1080)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHhcCCCCCCCCCcH---HHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhhccCC
Confidence            356777654  479999   999999999999999999999999999999999999999999988654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.16  E-value=0.00019  Score=46.90  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=23.5

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+.......|+|.|.+|||||+.++.+...+
T Consensus        21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            345556677899999999999999999987755

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.11  E-value=0.00045  Score=45.08  Aligned_cols=34  Identities=32%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.-+...+...|+|.|.||||||+..+.+...|.
T Consensus        17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3344456788999999999999999999988774

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.00  E-value=0.00078  Score=41.78  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=27.1

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.......|+|+|++|+|||..++.+.+.+..
T Consensus        37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            334456788999999999999999999887754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.94  E-value=0.0003  Score=44.94  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=24.0

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      |..-.+...|+|.|.+|||||+.++.+...
T Consensus         3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            3 MTDDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            555667789999999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.84  E-value=0.00085  Score=41.77  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=26.7

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +.......|+|+|++|+|||..++.+.+.+..
T Consensus        38 l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           38 LSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             HTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             HhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            34466788999999999999999999887754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.78  E-value=0.00055  Score=44.15  Aligned_cols=27  Identities=15%  Similarity=0.315  Sum_probs=23.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|+|.||||||+.++.++..+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            346789999999999999999988653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.76  E-value=0.00078  Score=44.25  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++.+.|.|.|.||||||+.++.+...+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            56788999999999999999999988763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.73  E-value=0.0016  Score=42.20  Aligned_cols=33  Identities=18%  Similarity=0.047  Sum_probs=26.9

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +......+.++|+|++|+|||..++.+.+.+..
T Consensus        46 ~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           46 AASGDGVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             HHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            333446789999999999999999998877653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.71  E-value=0.00074  Score=42.55  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-|.|+|+|..|||||+.++.+-+.|
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHh
Confidence            35899999999999999999887654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.69  E-value=0.00077  Score=43.38  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.+.|.|.|.+|||||+.++.+...+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            45678999999999999999998765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.65  E-value=0.00079  Score=42.50  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|+|-+|||||+.++.+.+.|
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999987643

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.65  E-value=0.00072  Score=44.44  Aligned_cols=26  Identities=35%  Similarity=0.497  Sum_probs=22.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.++|.|.||||||+..+.++..+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            45689999999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.62  E-value=0.00084  Score=44.07  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=24.0

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -.+.+.+.|.|+||||||+..+.+...+.
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35678899999999999999999987763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.57  E-value=0.00096  Score=42.87  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|.+|||||+.++.+...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45678999999999999999998877

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.52  E-value=0.0013  Score=42.85  Aligned_cols=26  Identities=38%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +...|+|.|.+|||||+.++.+.+.|
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999988754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.52  E-value=0.0011  Score=43.14  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+...|.|.|.+|||||+.++.+...+-
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4556789999999999999999887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.51  E-value=0.0015  Score=41.61  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.++|.|.+|+|||+.++.+...+..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   64 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYE   64 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999887763

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.51  E-value=0.0022  Score=44.32  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.+.+- -...+.++|.|.+|||||+..+.++.++...
T Consensus        16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~   52 (261)
T 2eyu_A           16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT   52 (261)
T ss_dssp             HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence            444444 5678899999999999999999999987644

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.51  E-value=0.0028  Score=40.35  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=25.0

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+....++|+|++|+|||+.++.+.+.+..
T Consensus        41 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           41 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             HTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3344568999999999999999998877643

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.50  E-value=0.0011  Score=43.06  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|+|.+|||||+.++.+.+.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3469999999999999999988765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.49  E-value=0.0015  Score=41.27  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +...|+|.|.+|||||+.++.+...+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999887654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.48  E-value=0.0023  Score=40.63  Aligned_cols=37  Identities=24%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+...+..- ..+.++|.|++|+|||..++.+...+..
T Consensus        26 ~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           26 ELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             HHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            444444333 7788999999999999999999987763

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.45  E-value=0.0012  Score=43.45  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....|+|+|.||+|||+.++.++..+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3567899999999999999999988764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.45  E-value=0.0013  Score=42.49  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=25.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|++|||||+..|.+...+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            677899999999999999999999987

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.44  E-value=0.0013  Score=40.97  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|-+|||||+.++.+.+.|
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999987664

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.42  E-value=0.0023  Score=41.94  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=27.9

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |.+........|+|.|.+|||||+.++.+.+.|.
T Consensus        17 r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           17 RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3444556678899999999999999999988775

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.41  E-value=0.0012  Score=43.19  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|+|.||||||+.++.+.+.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45679999999999999999998876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.41  E-value=0.0011  Score=44.13  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |||+|.||+||++..+.+++-+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.41  E-value=0.0033  Score=39.71  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=25.4

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.......++|+|++|.|||..++.+.+.+.
T Consensus        31 ~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           31 GYVERKNIPHLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             HHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            334444445699999999999999999887663

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.39  E-value=0.0012  Score=43.95  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.||||||+..+.++..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356788999999999999999998866

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.35  E-value=0.0015  Score=41.02  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|+|.+|||||+.++.+...+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            568999999999999999887653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.35  E-value=0.0015  Score=44.13  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=23.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...++|+|.||||||+..+.++..+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            567899999999999999999887664

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.33  E-value=0.0019  Score=41.08  Aligned_cols=26  Identities=35%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|+|.+|+|||+.++.+.+.+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999887655

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.30  E-value=0.0016  Score=41.11  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=21.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..|+|+|.+|||||+.++.+.+.|-
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999887654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.28  E-value=0.0022  Score=40.83  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...|+|+|.+|||||+.++.+...|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457799999999999999999988764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.24  E-value=0.002  Score=42.06  Aligned_cols=24  Identities=46%  Similarity=0.720  Sum_probs=21.1

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.|.|++|+|||+..+.+...+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.24  E-value=0.0022  Score=42.97  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|.+|||||+.++.+.+.|
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998555

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.22  E-value=0.0053  Score=39.53  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.|+|.|++|+|||..++.+...+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999998887765

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.22  E-value=0.0033  Score=46.51  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +++.++ ......|+|+|.+|||||+..+.++.++..
T Consensus       158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            556664 366778999999999999999999988753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.21  E-value=0.0022  Score=40.73  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|.+|||||+.++.+.+.|
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4578999999999999999988765

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.17  E-value=0.004  Score=43.59  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....|.|+|.+|||||+.++.+...+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5567899999999999999999887664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.14  E-value=0.0019  Score=40.78  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|+|.|-+|||||+.++.+.+.|.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999988765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.13  E-value=0.0025  Score=42.29  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=17.1

Q ss_pred             CCceEEecCCCCCccchhhhhhH-HhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVI-QYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l-~~l   61 (79)
                      ....|.|+|.+|||||+.++.+. ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            46789999999999999999998 665

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.11  E-value=0.0011  Score=45.15  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||||||+..+.+...+..
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            46788999999999999999988766543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.11  E-value=0.0028  Score=41.40  Aligned_cols=25  Identities=36%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|.|.|.+|||||+.++.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999988755

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.09  E-value=0.0029  Score=40.14  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|+|.+|||||+.++.+.+.|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999987654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.09  E-value=0.0011  Score=43.51  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=24.1

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.|.|.|+||||||+.++.++.++...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            468899999999999999999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.08  E-value=0.0045  Score=43.92  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=25.9

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+...|.|.|.||||||+.++.+...+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            356788999999999999999999887754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.07  E-value=0.0033  Score=41.04  Aligned_cols=28  Identities=25%  Similarity=0.185  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....|.|+|.+|||||+.++.+...+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999988764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.07  E-value=0.0035  Score=44.75  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -...+++.|.|.||||||+.++.++.++
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            4678999999999999999999999887

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.05  E-value=0.0026  Score=42.87  Aligned_cols=27  Identities=15%  Similarity=0.362  Sum_probs=23.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|+|.||+|||+..+.+++.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            567899999999999999999998754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.04  E-value=0.006  Score=42.39  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             cCCCc--eEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQ--SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~Q--sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....  +++|+|++|+|||..++.+.+.+.
T Consensus        39 ~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           39 NPGHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             STTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            45556  899999999999999999887664

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.02  E-value=0.0024  Score=39.32  Aligned_cols=19  Identities=47%  Similarity=0.639  Sum_probs=17.6

Q ss_pred             eEEecCCCCCccchhhhhh
Q psy17856         39 SILCTGESGAGKTENTKKV   57 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~   57 (79)
                      .|+|+|.+|||||+.++.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999988

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.01  E-value=0.0034  Score=40.14  Aligned_cols=21  Identities=38%  Similarity=0.514  Sum_probs=18.7

Q ss_pred             CCceEEecCCCCCccchhhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKK   56 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~   56 (79)
                      +...+.|.|.||||||+.++.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHH
Confidence            467889999999999999994

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.01  E-value=0.0028  Score=40.41  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|+|.|-+|||||+.++.+.+.|-
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            489999999999999999988764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.00  E-value=0.0028  Score=40.53  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +.|+|.|.+|||||+.++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.00  E-value=0.0011  Score=42.93  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=21.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|+|.|.+|||||+.++.+.++|.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999998885

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.98  E-value=0.0038  Score=43.87  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+....|.|.|.||||||+.++.+...|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            345678899999999999999999988864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.97  E-value=0.0039  Score=39.82  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|.|.+|||||+.++.+...|.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999988775

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.97  E-value=0.006  Score=41.25  Aligned_cols=28  Identities=25%  Similarity=0.232  Sum_probs=24.0

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ......++|.|++|+|||..++.+.+.+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            4567889999999999999999887753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.97  E-value=0.0031  Score=39.45  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+.|
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999887654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.96  E-value=0.0049  Score=44.64  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..++.+.. .....|+|+|.+|||||+..+.++.++...
T Consensus       113 ~~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          113 EVFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             HHHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            35666644 344589999999999999999999988654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.96  E-value=0.0057  Score=42.60  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=27.4

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .........+++|+|++|.|||..++.+.+.+..
T Consensus        38 ~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~   71 (384)
T 2qby_B           38 YFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE   71 (384)
T ss_dssp             HHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3334566779999999999999999999887643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.95  E-value=0.0052  Score=39.62  Aligned_cols=29  Identities=31%  Similarity=0.209  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.++|.|++|+|||+.++.++..+..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~   49 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLR   49 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999998876654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.92  E-value=0.0033  Score=39.21  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999887754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.92  E-value=0.0043  Score=41.69  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+...|.|.|.+|||||+.++.+...+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456788999999999999999988765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.92  E-value=0.0026  Score=42.03  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=21.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +...|+|.|-+|||||+.++.+.+.|
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            44679999999999999999887654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.92  E-value=0.0034  Score=39.75  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|-+|||||+.++.+.+.|
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999987644

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.90  E-value=0.0046  Score=41.79  Aligned_cols=27  Identities=30%  Similarity=0.504  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|.|++|+|||..++.+.+.+
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999988776

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.90  E-value=0.0066  Score=43.49  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+...|.|.|.+|+|||+.++.+..++...+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~  157 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG  157 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            4578899999999999999999998876543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.89  E-value=0.0033  Score=39.11  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+..|+|.||+|+|||..++.+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            567789999999999999999876643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.87  E-value=0.0022  Score=46.19  Aligned_cols=29  Identities=31%  Similarity=0.594  Sum_probs=25.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +..+.|+|+|.+|||||+..+.++.++..
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            35678999999999999999999988754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.86  E-value=0.0042  Score=44.94  Aligned_cols=31  Identities=32%  Similarity=0.559  Sum_probs=26.9

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      -...+.|+|+|.+|||||+..+.++.++...
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            4567789999999999999999999987654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.84  E-value=0.0037  Score=39.60  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|.+|||||+.++.+.+.|
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999887654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.84  E-value=0.0038  Score=43.34  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .++|.|++|+|||+.++.+...+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            399999999999999999988553

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.84  E-value=0.0037  Score=39.70  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+.|
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999887654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.84  E-value=0.0034  Score=40.71  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+.++.++..+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678899999999999999999886544

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.83  E-value=0.0039  Score=39.32  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=17.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|+|-+|||||+.++.+.+.|
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3468999999999999999987654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.82  E-value=0.003  Score=41.06  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|.|+|.+|||||+.++.+...+
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            345678999999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.81  E-value=0.0023  Score=43.62  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|++|||||+..+.+...+..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP   54 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788999999999999999998876643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.81  E-value=0.0034  Score=41.89  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .+...|.|.|.+|||||+.++.+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34678999999999999999988775

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.81  E-value=0.0066  Score=42.02  Aligned_cols=28  Identities=21%  Similarity=0.132  Sum_probs=24.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ....++|.|++|+|||..++.+...+..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            4578999999999999999999887753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.80  E-value=0.0035  Score=39.20  Aligned_cols=22  Identities=32%  Similarity=0.521  Sum_probs=19.9

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..|+|.|-+|||||+.++.+.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999887

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.80  E-value=0.0048  Score=43.00  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|+|.||||||+.++.+.+.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999988654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.79  E-value=0.0058  Score=43.26  Aligned_cols=29  Identities=28%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.+.|.|.|.+|+|||+.++.+..++...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~  129 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL  129 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            46789999999999999999999887643

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.78  E-value=0.0057  Score=43.18  Aligned_cols=29  Identities=28%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.+.|.|.|.+|+|||+.++.+..++...
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~  127 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE  127 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999887643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.78  E-value=0.004  Score=39.87  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|+|.|-+|||||+.++.+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            356899999999999999999887643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.76  E-value=0.0042  Score=39.28  Aligned_cols=23  Identities=43%  Similarity=0.673  Sum_probs=20.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|+|-+|||||+.++.+.+.|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999998876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.76  E-value=0.0039  Score=42.43  Aligned_cols=28  Identities=18%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999877654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.76  E-value=0.0035  Score=39.49  Aligned_cols=24  Identities=17%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|+|.+|||||+.++.+.+.|
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999987654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.76  E-value=0.0073  Score=40.45  Aligned_cols=36  Identities=17%  Similarity=0.116  Sum_probs=27.4

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +.+++   ...+.+.|.|++|||||+..+.+.-. ...++
T Consensus        15 ~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G   50 (208)
T 3b85_A           15 YVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK   50 (208)
T ss_dssp             HHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred             HHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence            44454   35678899999999999999998877 44443

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.75  E-value=0.0041  Score=40.44  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|+|-+|||||+.++.+.+.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999987654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.75  E-value=0.0048  Score=39.20  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=22.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|.+|||||+.++.+.+.|
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999987655

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.75  E-value=0.0052  Score=40.29  Aligned_cols=26  Identities=35%  Similarity=0.318  Sum_probs=23.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..|+|+|.||+|||+.++.++..|..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            56899999999999999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.74  E-value=0.005  Score=41.83  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=22.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .....|.|.|.+|||||+.++.+.+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999998843

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.73  E-value=0.0057  Score=40.52  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|.|++|+|||..++.+.+.+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999887754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.73  E-value=0.0043  Score=39.13  Aligned_cols=24  Identities=21%  Similarity=0.464  Sum_probs=20.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|.|-+|||||+.++.+.+.+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999887654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.72  E-value=0.0057  Score=40.94  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+...+
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence            35679999999999999999887654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.68  E-value=0.0061  Score=39.36  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ......|+|+|-+|||||+.++.+.+.|
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455679999999999999999988765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.66  E-value=0.002  Score=44.12  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||||||+..+.+...+..
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   61 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP   61 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            35778999999999999999998876543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.64  E-value=0.0045  Score=42.69  Aligned_cols=28  Identities=18%  Similarity=0.368  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678899999999999999999887653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.63  E-value=0.0066  Score=41.30  Aligned_cols=26  Identities=38%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...++|.|++|+|||+.++.+.+.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            46899999999999999999888763

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.62  E-value=0.0058  Score=39.35  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...|+|+|-+|||||+.++.+.+.|.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.62  E-value=0.0042  Score=39.56  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|+|-+|||||+.++.+.+.|
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999988765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.61  E-value=0.011  Score=39.84  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...-.|+|+|-+|||||+.++.+.+.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            355679999999999999999998755

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.60  E-value=0.0027  Score=44.15  Aligned_cols=28  Identities=14%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||||||+..+.+...+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5678899999999999999999887654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.60  E-value=0.0062  Score=40.25  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.4

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.|.|.|.+|+|||+..+.+...+.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4688999999999999999998876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.59  E-value=0.0055  Score=42.38  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .+.+.+.|.|++|||||+..|.+.-.
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46788999999999999999998876

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.58  E-value=0.0055  Score=39.47  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...|+|+|-+|||||+.++.+.+.|-
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.57  E-value=0.0054  Score=41.93  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .+.+.+.|.|++|||||+..|.+.-.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35778899999999999999998875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.55  E-value=0.0028  Score=43.76  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+..
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p   58 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLEKP   58 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788899999999999999988776543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.55  E-value=0.0077  Score=46.10  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.|+|.|.||||||+..+.+...|.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            4678899999999999999999988775

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.55  E-value=0.0046  Score=40.29  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|+|-+|||||+.++.+.+.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999987644

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.54  E-value=0.0062  Score=41.98  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=25.4

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ....+.++|+|++|+|||+.++.+.+.+..
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            455789999999999999999998876643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.51  E-value=0.0062  Score=42.07  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .....+++|+|++|+|||..++.+.+.+..
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999887744

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.50  E-value=0.0019  Score=46.09  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...+.+.|.|+||||||+..+.++.++...
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~  107 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYDIS  107 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence            567889999999999999999998876543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.49  E-value=0.0071  Score=41.13  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+...+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46899999999999999999887654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.49  E-value=0.0066  Score=38.87  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.1

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|.|+|.+|||||+.++.+.+.|
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            68999999999999999887643

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.49  E-value=0.011  Score=40.29  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=25.7

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+....|+|.|++|+|||..++.+.+.+...
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~   94 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL   94 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3455679999999999999999988887543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.48  E-value=0.0055  Score=42.56  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+..
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p   76 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLEDF   76 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence            46788999999999999999998776543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.47  E-value=0.0061  Score=38.90  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +...|.|+|.+|||||+.++.+.+.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4467899999999999999987653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.47  E-value=0.0027  Score=43.66  Aligned_cols=29  Identities=21%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+..
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p   59 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFLKA   59 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35778899999999999999998776543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.46  E-value=0.0045  Score=41.68  Aligned_cols=28  Identities=21%  Similarity=0.186  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3567889999999999999998876554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.45  E-value=0.0027  Score=44.07  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+..
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p   63 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSP   63 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            45788899999999999999998876543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.45  E-value=0.0088  Score=43.51  Aligned_cols=29  Identities=28%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.+.|.|.|.+|+|||+.++.+..++...
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            46789999999999999999999887643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.45  E-value=0.0057  Score=41.39  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|.+|||||+.++.+.+.+
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            35678999999999999999988765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.42  E-value=0.0064  Score=41.57  Aligned_cols=28  Identities=18%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+ +.+.|.|++|||||+..|.+.-.+..
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p   50 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45 78899999999999999998876543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.42  E-value=0.006  Score=42.13  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4677899999999999999998876553

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.42  E-value=0.0069  Score=38.76  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-|+|.|-+|||||+.++.+.+.|
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998876

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.41  E-value=0.0028  Score=44.37  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+..
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            45788999999999999999998876543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.41  E-value=0.0028  Score=42.84  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3577899999999999999999876654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.39  E-value=0.0045  Score=38.50  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ..+..|+|.|++|+|||..++.+...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            45677999999999999999887654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.38  E-value=0.0072  Score=41.73  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|.+|||||+..+.+...|
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            6789999999999999999987743

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.38  E-value=0.0082  Score=40.48  Aligned_cols=27  Identities=33%  Similarity=0.346  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|.|++|+|||..++.+...+
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            467789999999999999999887654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.37  E-value=0.0072  Score=40.38  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|++|+|||+.++.+...+
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999887654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.36  E-value=0.0064  Score=42.01  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+.
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999998876554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.35  E-value=0.014  Score=40.71  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...++|+|++|.|||..++.+.+.+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36899999999999999999988774

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.35  E-value=0.0077  Score=39.65  Aligned_cols=27  Identities=19%  Similarity=0.080  Sum_probs=23.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..|+|+|.+|||||+.+..++..|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            468999999999999999999988643

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.35  E-value=0.0088  Score=38.40  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=21.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ....|+|+|-+|||||+.++.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999988776

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.34  E-value=0.0059  Score=40.09  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|.|-+|||||+.++.+.+.|
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999988765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.34  E-value=0.0083  Score=38.61  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=21.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|+|-+|||||+.++.+.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34568999999999999999887654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.34  E-value=0.017  Score=40.04  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=25.9

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+....++|+|+.|.|||..++.+.+.+.+
T Consensus        34 ~~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3455678999999999999999999887754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.31  E-value=0.011  Score=43.77  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.++....-.+++|.|++|+|||+.++.+.+.+
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            344556666666899999999999999999988765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.011  Score=42.48  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=30.5

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..+...+..+|+|+|.+|.|||..++.+++-|..
T Consensus        36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345556788999999999999999999999988854

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.30  E-value=0.0064  Score=40.85  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+..|+|.|++|+|||..++.+.+.+
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence            456789999999999999999887654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.29  E-value=0.0058  Score=41.26  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+.-.+.
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3567889999999999999999876553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.28  E-value=0.0062  Score=42.26  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=21.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      .+.|.|+||+|||+..+.+...+...++
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G   31 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA   31 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            5788999999999999999987655443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.26  E-value=0.0069  Score=41.18  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+..
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   58 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35678899999999999999998776543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.25  E-value=0.011  Score=45.17  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+.|.|.|.+|+|||++++.+..++...
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            56789999999999999999999887644

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.22  E-value=0.016  Score=39.21  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=26.3

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.++.......++|+|+.|.|||..++.+.+.+.
T Consensus        38 ~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           38 KHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3444445555699999999999999999887763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.20  E-value=0.0072  Score=42.52  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.++|+|.+|||||+..+.++...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            568999999999999999988753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.20  E-value=0.014  Score=40.08  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..+.......++|.|++|+|||..++.+.+.+..
T Consensus        49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~   84 (353)
T 1sxj_D           49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG   84 (353)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            334444443344999999999999999999888753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.20  E-value=0.0072  Score=40.81  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....|+|+|.||+|||+.+..+++
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999887775

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.19  E-value=0.006  Score=39.31  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|.|+|.+|||||+.++.+..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999998876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.18  E-value=0.011  Score=38.77  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|-.|||||+.++.+.+.|
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999987765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.17  E-value=0.0037  Score=43.00  Aligned_cols=28  Identities=14%  Similarity=0.275  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567889999999999999998876654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.16  E-value=0.018  Score=40.20  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+..++-..++|.|++|+|||+.++.+.+.+.
T Consensus        40 ~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           40 FVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            33444333489999999999999999988775

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.16  E-value=0.0077  Score=40.35  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=22.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|.|++|+|||..++.+...+
T Consensus        42 ~~~~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           42 KIPKGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            345679999999999999999887754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.16  E-value=0.0038  Score=43.66  Aligned_cols=30  Identities=23%  Similarity=0.241  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+...
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~   74 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYEPAT   74 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            357788999999999999999988766433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.15  E-value=0.0055  Score=43.65  Aligned_cols=28  Identities=21%  Similarity=0.561  Sum_probs=24.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.++|.|.+|||||+..+.++.++..
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            4567999999999999999999988754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.15  E-value=0.01  Score=41.06  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=23.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|.|++|+|||..++.+...+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            456789999999999999999887654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.14  E-value=0.0097  Score=40.47  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..|+|+|-+|||||+.++.+.+.|.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999988754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.13  E-value=0.0059  Score=46.20  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.|+|+|.+|||||+..+.++.++.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            455699999999999999999988774

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.13  E-value=0.013  Score=40.94  Aligned_cols=26  Identities=31%  Similarity=0.350  Sum_probs=19.2

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .-.|.|+|-+|||||+.++.+.+.|-
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34689999999999999999887654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.12  E-value=0.011  Score=40.45  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=26.5

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      -...+.++|.|.+|+|||+.++.+...++..
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            3577889999999999999999988877654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.12  E-value=0.0088  Score=40.74  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|+|.+|||||+.++.+.+.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            47899999999999999987654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.12  E-value=0.012  Score=39.75  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=23.7

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+....++|+|++|+|||..++.+.+.+.
T Consensus        35 ~~~~~~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           35 RKNIPHLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             TTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence            34444599999999999999999988763

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.07  E-value=0.0083  Score=41.27  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3567889999999999999999876653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.06  E-value=0.0082  Score=39.27  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|-+|||||+.++.+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999988754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.04  E-value=0.011  Score=40.48  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|+|++|+|||..++.+.+.+
T Consensus        36 ~~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           36 EPLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999887755

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.96  E-value=0.011  Score=40.19  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|++|+|||+.++.+...+
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHc
Confidence            4469999999999999999887654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.96  E-value=0.011  Score=39.27  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|-+|||||+.++.+.+.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999988765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.94  E-value=0.033  Score=42.34  Aligned_cols=28  Identities=7%  Similarity=0.059  Sum_probs=24.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ....|+|+|-+|||||+..+.+-+.|-.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4468999999999999999999888764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.91  E-value=0.027  Score=38.09  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=25.1

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.......++|+|++|.|||..++.+.+.+.
T Consensus        35 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           35 QIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             HHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            334444433499999999999999999988764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.91  E-value=0.0086  Score=39.11  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|+|.+|||||+.++.+-.
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.91  E-value=0.019  Score=39.67  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|+|++|+|||..++.+.+.+
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            455689999999999999999886553

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.90  E-value=0.013  Score=37.72  Aligned_cols=33  Identities=15%  Similarity=-0.034  Sum_probs=25.4

Q ss_pred             HHHHhHh--cCCCceEEecCCCCCccchhhhhhHH
Q psy17856         27 PDQVYLS--DREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        27 Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +...++.  -...+.++|.|++|+|||+.++.++.
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3444553  24677899999999999999988876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.012  Score=43.91  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=28.7

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      -...+.+.|.|.+|||||+.+|.+..++...++
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            357788999999999999999999998876665

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.88  E-value=0.012  Score=43.32  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+...
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~   56 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLETIT   56 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence            457788999999999999999988766433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.82  E-value=0.016  Score=39.00  Aligned_cols=28  Identities=29%  Similarity=0.321  Sum_probs=24.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...-|+|.|.+|||||+.++.+.+.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4567999999999999999999998863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.82  E-value=0.016  Score=40.71  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....++|.|.+|+|||+.++.+...+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34679999999999999999998876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.80  E-value=0.011  Score=38.23  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|.|+|.+|||||+.++.+..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.79  E-value=0.022  Score=36.90  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=25.7

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.+........|+|.|.+|+|||+....++..+
T Consensus        30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            334444556778999999999999999888764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.78  E-value=0.027  Score=39.43  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=24.7

Q ss_pred             CCCceEEe--cCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILC--TGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvi--sGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.++|  +|+.|.|||..++.+.+.+..
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            46778999  999999999999998876643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.77  E-value=0.0062  Score=42.30  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.5

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.+.|.|++|||||+..|.+.-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6788999999999999999988766

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.76  E-value=0.024  Score=41.65  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...++|.|++|+|||+.++.+...+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~  156 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ  156 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999887753

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.73  E-value=0.015  Score=40.09  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=22.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|.|++|+|||..++.+.+.+.
T Consensus        44 ~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           44 GIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCceEEEECCCCccHHHHHHHHHHhCc
Confidence            445699999999999999999887664

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.70  E-value=0.0092  Score=45.20  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|+||||||+..+.+...+...+
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~  397 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDS  397 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            5678899999999999999999998775443

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.70  E-value=0.024  Score=43.13  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=33.0

Q ss_pred             CCCCccccccc---cchHHHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         12 IPDEHIHYEVD---LTGGPDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        12 ~~~phi~~~ya---ia~~Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+|+.   |.   ++......+. ..+....|+|+|-+|||||+.++.+.+.|.
T Consensus       346 ~~~p~~---~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          346 RKLPEW---FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             CCCCTT---TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcc---ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            356777   76   5543333331 223456789999999999999999888764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.69  E-value=0.011  Score=41.64  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+.
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4677889999999999999999876654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.69  E-value=0.015  Score=41.22  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=22.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+.+.+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999999988765

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.69  E-value=0.02  Score=40.58  Aligned_cols=28  Identities=25%  Similarity=0.372  Sum_probs=24.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ....|+|.|.+|+|||+.++.+..++..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            4567899999999999999999988764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.68  E-value=0.011  Score=41.98  Aligned_cols=29  Identities=14%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.|.|.||||||+.++.+...+....
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            67889999999999999999988765443

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.64  E-value=0.018  Score=44.07  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....|+|+|-+|||||+.++.+-+.|.
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            3456789999999999999999887765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.62  E-value=0.015  Score=37.92  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=25.9

Q ss_pred             HHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         27 PDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        27 Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ....++..  .+.+.++|.|++|+|||+.++.++..
T Consensus        12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34445533  46778999999999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.60  E-value=0.015  Score=42.54  Aligned_cols=29  Identities=28%  Similarity=0.142  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+..
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence            46778899999999999999988766543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.59  E-value=0.018  Score=42.74  Aligned_cols=44  Identities=18%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             cccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         19 YEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        19 ~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.|.....+...++.-.+.|.+.|.|.||+|||+..+.+..++.
T Consensus       139 ~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          139 HVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            33543457888887778999999999999999999999888763

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.58  E-value=0.014  Score=40.78  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=23.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+..|+|.||+|+|||..++.+....
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            567889999999999999998887643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.58  E-value=0.026  Score=41.20  Aligned_cols=38  Identities=13%  Similarity=0.087  Sum_probs=29.0

Q ss_pred             chHHHHHhH-hcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         24 TGGPDQVYL-SDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        24 a~~Ay~~m~-~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.+. .-.....|+|.|.+|+|||+.++.+...+
T Consensus       155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            344555543 34667899999999999999999988754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.56  E-value=0.026  Score=40.15  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=26.2

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ......+.|.|.+|+|||+..+.++..+..
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            467788999999999999999999987754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.56  E-value=0.014  Score=42.62  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|+||||||+..|.+.-.+...
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~   57 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFEQPD   57 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence            456788999999999999999988766443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.55  E-value=0.016  Score=42.11  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.||||||+..|.+.-.+..
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence            45778899999999999999998876543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.54  E-value=0.018  Score=38.78  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...|.|+|-+|||||+.++.+.+.|-
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35689999999999999998877543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.51  E-value=0.017  Score=42.10  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.+.|.|.||||||+..|.+.-.+..
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence            45778899999999999999998876543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.51  E-value=0.014  Score=36.93  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=19.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+|.|++|+|||+..+.+.-.|
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999988766544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.48  E-value=0.022  Score=37.77  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|-.|||||+.++.+.+.|
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999987765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.43  E-value=0.011  Score=45.09  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ++.+.+.|.|+||||||+..+.++..+...
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~  408 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVD  408 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence            567899999999999999999998776543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.43  E-value=0.018  Score=40.58  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=22.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+.+.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999987765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.41  E-value=0.015  Score=38.27  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|.|-.|||||+.++.+.+.|
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999987765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.41  E-value=0.018  Score=42.05  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.||||||+..|.+.-.+..
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            45778899999999999999998876543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.41  E-value=0.024  Score=39.50  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+.+.+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35689999999999999998887653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.37  E-value=0.025  Score=37.56  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|.|+|.+|||||+.++.+...|
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345679999999999999999887643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.36  E-value=0.0072  Score=45.80  Aligned_cols=31  Identities=16%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||||||+..+.++..+...+
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~  395 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTS  395 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence            5678899999999999999999888765433

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.35  E-value=0.018  Score=41.86  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.||||||+..|.+.-.+..
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            35678899999999999999998766543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.33  E-value=0.0084  Score=45.43  Aligned_cols=31  Identities=16%  Similarity=0.342  Sum_probs=26.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||||||+..+.+...+...+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~  397 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYDIDE  397 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccCCCC
Confidence            5678899999999999999999988765433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.33  E-value=0.021  Score=40.50  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....|+|.|++|+|||..++.+...+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            457789999999999999999887654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.32  E-value=0.018  Score=39.52  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=21.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-.|.|.|.+|||||+.++.+.+.|
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999887654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.30  E-value=0.043  Score=40.53  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=27.0

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .++..+....++|.|++|.|||..++.+.+.+.
T Consensus       194 ~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            344456677899999999999999999888764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.28  E-value=0.042  Score=42.41  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=27.8

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .++..+....++|.|++|+|||..++.+.+.+..
T Consensus       200 ~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          200 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             HHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3444567788999999999999999998887743

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.27  E-value=0.039  Score=36.62  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      +.+-+.+...+..   ++.+++.|.+|+|||+....++
T Consensus        63 ~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           63 KKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             GGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence            4444555555543   4679999999999998766544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.27  E-value=0.017  Score=39.39  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ..|+|.|-+|||||+.++.+.+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998763

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.27  E-value=0.02  Score=41.77  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|+|-+|||||+.++.+.+.+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            45678999999999999999987654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.25  E-value=0.022  Score=37.11  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....++|.|++|+|||+.+..++..++
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~   48 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999877766554

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.25  E-value=0.019  Score=41.79  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.||||||+..|.+.-.+.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            3567889999999999999999876654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.19  E-value=0.014  Score=42.17  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+.+.+.|.|.||||||+..|.+.-.+..
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p   52 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFHVP   52 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence            45678899999999999999998766543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.17  E-value=0.021  Score=38.32  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..-|+|.|-+|||||+.++.+.++|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=94.17  E-value=0.027  Score=40.32  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|.|.|.||||||+.++.+...+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999877664

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.16  E-value=0.015  Score=42.73  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.||||||+..+.+.-.+.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            4678899999999999999999887664

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.15  E-value=0.027  Score=36.39  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...-.|+|.|.+|+|||+.+..++..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345578999999999999999988765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.14  E-value=0.023  Score=39.31  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +....|+|.|++|+|||..++.+.+.+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345688999999999999999888765

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.14  E-value=0.034  Score=39.01  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .++-...++|+|+.|.|||+.++.+.+.+.+..
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            345677899999999999999999999886543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.13  E-value=0.032  Score=39.63  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=24.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+.|+|+|.+|+|||+.+..+..++...
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            45689999999999999999998888643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.08  E-value=0.028  Score=39.43  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=23.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.|+|.|++|+|||..++.+...+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            58899999999999999998887766

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.03  E-value=0.0095  Score=45.34  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ++.+.+.|.|+||||||+..+.++..+...+
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~  397 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPER  397 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence            5678899999999999999999988765433

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.02  E-value=0.021  Score=38.89  Aligned_cols=29  Identities=28%  Similarity=0.251  Sum_probs=22.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +..-|+|.|-+|+|||+.++.+.+.|...
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            45579999999999999999999998654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.01  E-value=0.026  Score=38.41  Aligned_cols=27  Identities=19%  Similarity=0.148  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.+.++|.|.+|+|||+.++.++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            567899999999999999999887554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.99  E-value=0.031  Score=39.26  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.|+|.|.+|+|||+.+..+..++..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999988764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=93.97  E-value=0.056  Score=37.13  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+....+++.|++|.|||..++.+.+.+
T Consensus        44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           44 KGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             TTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            34556778999999999999999887665

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.96  E-value=0.021  Score=41.14  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=20.9

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...|+|.|+||+|||+.+..+++
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHh
Confidence            57899999999999999988876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=93.94  E-value=0.028  Score=39.99  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+...+
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHh
Confidence            35679999999999999999888765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.93  E-value=0.029  Score=39.36  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+...+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            34789999999999999999988765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.88  E-value=0.033  Score=38.95  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=26.0

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..++..-..+.+.|.|.||+|||+..+.++ .+.
T Consensus       157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          157 DELVDYLEGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             HHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            344444567889999999999999999988 443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.81  E-value=0.027  Score=42.62  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+.
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999886553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.80  E-value=0.025  Score=40.68  Aligned_cols=43  Identities=19%  Similarity=-0.016  Sum_probs=35.6

Q ss_pred             ccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         20 EVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        20 ~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|.....|...++.-.+.|.+.|.|.+|+|||+..+.+...+.
T Consensus        54 ~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           54 PFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3544557888887778999999999999999999999887753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.80  E-value=0.025  Score=36.73  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|+|.+|||||+.++.+.+.|
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999998877643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.78  E-value=0.016  Score=47.97  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=26.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..|.|-|.|+||||||+..+.+++++-..+
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1133 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSSCCSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCccCCC
Confidence            5688999999999999999999998875443

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.77  E-value=0.028  Score=37.58  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|..||||++.++.+.+.+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999988765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.75  E-value=0.015  Score=42.13  Aligned_cols=28  Identities=25%  Similarity=0.251  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|.||||||+..|.+.-.+.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4567889999999999999999876654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.75  E-value=0.028  Score=37.09  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .-.|.|+|-+|||||+.++.+.+.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999988775

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.74  E-value=0.025  Score=38.98  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|.+|+|||+.++.+...+
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHc
Confidence            4559999999999999999887643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.72  E-value=0.026  Score=35.99  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=18.8

Q ss_pred             eEEecCCCCCccchhhhhhHHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .|+|.|.+|+|||+..+.++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4688999999999999888753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.68  E-value=0.028  Score=38.50  Aligned_cols=26  Identities=35%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|+|.||+|||+.+..+.+.+
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            45779999999999999998877654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.68  E-value=0.023  Score=40.93  Aligned_cols=24  Identities=38%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....|+|+|+||+|||+.+-.+++
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999876654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.67  E-value=0.046  Score=41.22  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=23.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....++|.|++|+|||+.++.+...+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999988776

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.63  E-value=0.019  Score=36.69  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +.-.....|+|.|.+|+|||+..+.++..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34456678999999999999999988753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=93.61  E-value=0.036  Score=39.56  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=22.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+|+|.|++|.|||..++.+...+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            46799999999999999998886543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.60  E-value=0.035  Score=39.60  Aligned_cols=27  Identities=19%  Similarity=0.191  Sum_probs=23.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+..++|.|.+|+|||+..+.++..+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence            577889999999999999999886654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.59  E-value=0.029  Score=42.40  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=23.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +.+.|.|+||||||+..+.+.-.+...+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~   57 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDL   57 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            7889999999999999999887765443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.52  E-value=0.024  Score=36.16  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.0

Q ss_pred             eEEecCCCCCccchhhhhhHHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .|+|.|.+|+|||+..+.++..
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999988753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.52  E-value=0.036  Score=40.07  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=24.2

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |........|+|+|.+|+|||+.+..+.+.+-
T Consensus         4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            4 ISKASLPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             ---CCCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cccCCCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            33344556789999999999999999887764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.51  E-value=0.027  Score=37.86  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .-|+|.|-.|||||+.++.+.++|....
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~   31 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLG   31 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4589999999999999999999987543

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.48  E-value=0.089  Score=35.69  Aligned_cols=37  Identities=19%  Similarity=0.048  Sum_probs=26.7

Q ss_pred             chHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         24 TGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        24 a~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -+.....+.. -.++.++|+|+.|.|||...+.+.+.+
T Consensus        18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence            3444444444 333789999999999999998887653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.47  E-value=0.027  Score=42.02  Aligned_cols=32  Identities=25%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             HHHHhHh--cCCCceEEecCCCCCccchhhhhhH
Q psy17856         27 PDQVYLS--DREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        27 Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      +...+.-  -.+.+.++|.|++|||||+.++.++
T Consensus        27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence            4444443  2578899999999999999999963

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.47  E-value=0.028  Score=38.52  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=24.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..-|+|.|-+|||||+.++.+.++|...
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4679999999999999999999988654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.42  E-value=0.039  Score=41.12  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...++|+|++|+|||..++.+.+.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999888765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.41  E-value=0.073  Score=41.24  Aligned_cols=32  Identities=31%  Similarity=0.419  Sum_probs=26.3

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++..+....++|.|++|.|||..++.+.+.+.
T Consensus       195 ~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence            34446667899999999999999999888774

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.37  E-value=0.022  Score=38.44  Aligned_cols=28  Identities=21%  Similarity=0.181  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++..-|+|.|-.|||||+.++.+.+.|.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456789999999999999999988873

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.37  E-value=0.047  Score=37.16  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..-|+|.|-+|+|||+.++.+.+.|..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45667999999999999999999998876

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=93.37  E-value=0.028  Score=42.70  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....++|.|++|+|||+.++.+...+.
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            346899999999999999999988764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.37  E-value=0.031  Score=37.16  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .-|+|.|-.|||||+.++.+.+.|.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4589999999999999999998873

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.34  E-value=0.027  Score=35.53  Aligned_cols=21  Identities=24%  Similarity=0.604  Sum_probs=18.5

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||+..+.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999988875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.31  E-value=0.052  Score=37.93  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=24.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+.|.+.|.+|+|||+.+..+...+...
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~  125 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            45688899999999999999998887643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.24  E-value=0.036  Score=33.55  Aligned_cols=21  Identities=14%  Similarity=0.400  Sum_probs=18.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||+..+.++.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999988774

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.24  E-value=0.058  Score=42.07  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...|+|+|-+|||||+.++.+-+.|.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999988773

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.18  E-value=0.041  Score=35.24  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .++.-.|++.|.+|+|||...+.++.
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34455689999999999999888774

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.13  E-value=0.036  Score=42.12  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -++.+.+.|.|++|||||+..|.+.-.+.
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35678899999999999999999887553

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.06  E-value=0.027  Score=38.91  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...|+|+|-+|||||+.++.+..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.00  E-value=0.055  Score=36.63  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.-.|+|.|..||||++.++.+.+.+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44567889999999999999988765

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=93.00  E-value=0.074  Score=38.99  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             cchHHHHHhH---hcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         23 LTGGPDQVYL---SDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        23 ia~~Ay~~m~---~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +++.+...+-   ...+-.+|+|.|.+|+|||+..+.+...|
T Consensus         7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A            7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3455544442   23444569999999999999998877654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=92.99  E-value=0.038  Score=40.11  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..|+|+|.+|||||+.++.+.+.|-
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3689999999999999999888764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.97  E-value=0.042  Score=33.13  Aligned_cols=21  Identities=14%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999888774

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.96  E-value=0.048  Score=40.71  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=22.6

Q ss_pred             cCCCce--EEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQS--ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~Qs--IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -+....  |.|.|++|+|||+..+.++...
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            356666  8999999999999999987653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.87  E-value=0.044  Score=32.96  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999888763

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=92.85  E-value=0.056  Score=40.55  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ..+..|+|.|++|+|||..++.+...
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            56778999999999999999887654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=92.81  E-value=0.04  Score=37.25  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..-|+|.|-+|+|||+.++.+.+.|..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            457899999999999999999998864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.80  E-value=0.042  Score=33.99  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=18.5

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||+..+.+..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999988864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.79  E-value=0.058  Score=40.68  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|++.|-+|||||+.++.+.++|-
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346789999999999999999988773

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.77  E-value=0.034  Score=42.97  Aligned_cols=29  Identities=24%  Similarity=0.227  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++.+.+.|.|++|||||+..|.+.-.+..
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            57889999999999999999988876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.74  E-value=0.047  Score=32.81  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999877764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.73  E-value=0.047  Score=32.98  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999887763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.72  E-value=0.044  Score=34.13  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||+..+.++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999988874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=92.71  E-value=0.058  Score=39.70  Aligned_cols=27  Identities=33%  Similarity=0.397  Sum_probs=23.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|++.|.+|+|||+.++.+.+.|-
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456799999999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.65  E-value=0.041  Score=32.96  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999887764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.64  E-value=0.049  Score=33.39  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999888764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.63  E-value=0.045  Score=34.33  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....|+|.|.+|+|||+..+.+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345689999999999999988875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.63  E-value=0.048  Score=38.98  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=27.7

Q ss_pred             HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....++..  ...+.+.|.|++|+|||+.++.++-.+
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344455543  467888999999999999999888665

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.59  E-value=0.051  Score=32.84  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478899999999999888764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.56  E-value=0.026  Score=42.86  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ++.+.+.|.|++|||||+..+.+...+...
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~  321 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITAD  321 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            356788999999999999999988765433

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.54  E-value=0.1  Score=33.92  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.++|.|++|+|||..+-.++..
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            46778999999999999988765543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.53  E-value=0.042  Score=38.27  Aligned_cols=28  Identities=21%  Similarity=0.185  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.||+|||+..+.+...+.
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhccccc
Confidence            3467889999999999999998876554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.50  E-value=0.052  Score=32.97  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999887764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.46  E-value=0.063  Score=33.61  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....-.|++.|.+|+|||...+.++.
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence            34455789999999999999888764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.43  E-value=0.054  Score=32.81  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVE   28 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999888764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=92.39  E-value=0.094  Score=35.56  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +.++|+|+.|.|||...+.+.+.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            78999999999999999888753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.38  E-value=0.055  Score=33.17  Aligned_cols=21  Identities=19%  Similarity=0.525  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999888763

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=92.37  E-value=0.08  Score=41.73  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=26.8

Q ss_pred             hHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++..+....++|.|++|+|||..++.+.+.+..
T Consensus       185 ~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          185 ILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             HHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            334566678999999999999999999887754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.36  E-value=0.055  Score=33.48  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|++.|.+|+|||...+.++.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4588999999999999888775

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.35  E-value=0.052  Score=32.85  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999888764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.34  E-value=0.046  Score=33.45  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||...+.++.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3588999999999999888775

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.30  E-value=0.037  Score=42.65  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=23.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|++|||||+..|.+.-.+.
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            4678899999999999999998876554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.25  E-value=0.057  Score=33.80  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=19.5

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999888764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.23  E-value=0.055  Score=33.02  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            588999999999999888763

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.20  E-value=0.06  Score=33.25  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999887764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.18  E-value=0.052  Score=41.67  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .+.+.+.|.|.||||||+..+.++
T Consensus       346 ~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          346 PLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cCCCEEEEEeeCCCCHHHHHHHHH
Confidence            367888999999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.18  E-value=0.061  Score=33.09  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||...+.++.
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4589999999999999888763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.17  E-value=0.061  Score=32.83  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999888764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=92.15  E-value=0.069  Score=39.15  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....|+|.|++|+|||..++.+...+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999888765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.13  E-value=0.063  Score=32.43  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999888764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.10  E-value=0.027  Score=46.72  Aligned_cols=32  Identities=22%  Similarity=0.431  Sum_probs=27.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhhc
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVAA   66 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~   66 (79)
                      +..+.+.|.|+||||||+..+.+++++...++
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G  473 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG  473 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence            57788999999999999999999988765443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.04  E-value=0.048  Score=33.87  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999888764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.04  E-value=0.11  Score=38.79  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|++.|.+|+|||+.+..+..+|..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            567899999999999999999988864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.03  E-value=0.057  Score=35.64  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|.|.+|+|||+..+.++.
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHcC
Confidence            4689999999999999988874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=92.03  E-value=0.12  Score=36.23  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|++.|.+|+|||+.+..+..++..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~  124 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK  124 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            567889999999999999999888764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.01  E-value=0.066  Score=32.54  Aligned_cols=22  Identities=36%  Similarity=0.377  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||...+.++.
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999888753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.00  E-value=0.055  Score=32.78  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            478899999999999888763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.98  E-value=0.065  Score=33.08  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999888764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.97  E-value=0.064  Score=33.94  Aligned_cols=24  Identities=13%  Similarity=0.259  Sum_probs=19.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +.--|+|.|.+|+|||...++++.
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            445689999999999999887664

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.96  E-value=0.057  Score=38.88  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|+|.+|+|||+.++.+.+.+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999888765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=91.95  E-value=0.068  Score=32.34  Aligned_cols=20  Identities=40%  Similarity=0.361  Sum_probs=17.7

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...+.++.
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78899999999999988763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.94  E-value=0.07  Score=38.84  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.||+|||++.+.++..+.
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhcccc
Confidence            3567899999999999999999886554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.93  E-value=0.031  Score=46.20  Aligned_cols=30  Identities=20%  Similarity=0.391  Sum_probs=25.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +..+.+.|.|+||||||+..+.++.++...
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~  443 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPL  443 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            568889999999999999999998876543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.91  E-value=0.064  Score=32.62  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=17.6

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      -|++.|.+|+|||...+.++
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37889999999999988875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=91.90  E-value=0.074  Score=35.00  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.6

Q ss_pred             EEecCCCCCccchhhhhhHHhHhhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      |+|-|--|||||+.++.+.++|...
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~   27 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKR   27 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            7889999999999999999999754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.87  E-value=0.064  Score=33.20  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|.|.+|+|||...+.++.
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999888773

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=91.86  E-value=0.095  Score=41.32  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=22.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..++|.|++|.|||+.++.+.+.+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5899999999999999999988774

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.83  E-value=0.15  Score=37.22  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..++|.|..|+|||..++.++.+|....
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~   73 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALISTG   73 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999887543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.77  E-value=0.072  Score=32.71  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            578999999999999887764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.77  E-value=0.079  Score=39.53  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             HHHhHhc--CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         28 DQVYLSD--REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        28 y~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...++..  .+...++|.|++|+|||+.++.++..+.
T Consensus       270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3445543  4678899999999999999999887655

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=91.75  E-value=0.062  Score=38.95  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=21.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..|+|+|.+|+|||+.+..+.+.+-
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            4689999999999999999887664

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=91.74  E-value=0.11  Score=34.32  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.-.++++|..|+|||+.+..+..+|+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3456678999999999999999998876

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=91.73  E-value=0.072  Score=33.24  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||+..+.++.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            4689999999999999888764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.71  E-value=0.043  Score=41.51  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.+.|.|.+|||||+..|.+.-.+.
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3568889999999999999999876553

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.71  E-value=0.073  Score=32.71  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||...+.++.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            3578999999999999888764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.66  E-value=0.072  Score=32.64  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||...+.++.
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            3578999999999999988763

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.64  E-value=0.054  Score=33.14  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999887763

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.64  E-value=0.077  Score=33.01  Aligned_cols=31  Identities=26%  Similarity=0.243  Sum_probs=20.2

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +.+...+..-.|++.|.+|+|||...+.++.
T Consensus        10 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           10 KKMKQKERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -------CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             HhhcccCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3344324556789999999999999888764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.63  E-value=0.094  Score=33.11  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...-.|++.|.+|+|||...+.++.
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3445689999999999999888764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.63  E-value=0.076  Score=33.30  Aligned_cols=21  Identities=33%  Similarity=0.552  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            578999999999999887764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.63  E-value=0.075  Score=33.42  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|+|.|.+|+|||...+.++.
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3588999999999999888763

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=91.60  E-value=0.15  Score=35.81  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             chHHHHHhHhcC--CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         24 TGGPDQVYLSDR--EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        24 a~~Ay~~m~~~~--~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-.+....+..+  +..+|+|.|..|+|||..++.+..++
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            334445555543  24589999999999999999888763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.57  E-value=0.076  Score=33.27  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=19.2

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            34689999999999999888763

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.57  E-value=0.065  Score=33.18  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|.+|+|||...+.++.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999888763

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.55  E-value=0.072  Score=33.79  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +.-.|++.|.+|+|||...+.+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999888764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.54  E-value=0.078  Score=33.08  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            579999999999999888764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.53  E-value=0.046  Score=42.10  Aligned_cols=28  Identities=29%  Similarity=0.299  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...+.+.|.|.+|||||+..|.+.-.+.
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3578899999999999999999887554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.52  E-value=0.063  Score=39.66  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-+-.|+|.|+||+|||+..+.++...
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence            344567999999999999998887543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.51  E-value=0.062  Score=32.80  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.2

Q ss_pred             ceEEecCCCCCccchhhhhhH
Q psy17856         38 QSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l   58 (79)
                      -.|++.|.+|+|||...+.++
T Consensus        15 ~~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            358899999999999988776

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=91.49  E-value=0.06  Score=33.68  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||+..+.++.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45688999999999999988874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=91.47  E-value=0.11  Score=40.17  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.7

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..++|.|++|+|||+.++.+.+.+
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh
Confidence            479999999999999999988776

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=91.46  E-value=0.028  Score=40.02  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .-.+.+.+.|.|.||+|||+..+.++..+..
T Consensus       169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~  199 (307)
T 1t9h_A          169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGL  199 (307)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHhcccccc
Confidence            3345788999999999999999998866543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=91.45  E-value=0.11  Score=38.55  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ....|++.|.+|+|||+.+..+..++..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3567889999999999999999988864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.45  E-value=0.061  Score=33.32  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378899999999999888764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.42  E-value=0.05  Score=33.02  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=17.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|.+|+|||...+.++.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            378899999999999887753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.39  E-value=0.074  Score=39.03  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=24.5

Q ss_pred             HHHHHhHhc--CCCceEEecCCCCCccchhhhhhH
Q psy17856         26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .....++..  .....++|.|++|+|||+.++.++
T Consensus       165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            334445533  367789999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.38  E-value=0.083  Score=33.22  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            478999999999999888764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=91.38  E-value=0.059  Score=37.63  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -+-.|+|.|++|+|||+..+.+..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            345678999999999999999764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=91.35  E-value=0.09  Score=40.74  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .++|.|++|.|||+.++.+.+.+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            699999999999999999988773

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.33  E-value=0.11  Score=31.81  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=19.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +.-.|++.|.+|+|||...+.++.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345688999999999999888764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=91.33  E-value=0.1  Score=38.24  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|.+|+|||..++.+.+.+
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHh
Confidence            4689999999999999999888776

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=91.30  E-value=0.057  Score=37.27  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...++|.|++|.|||..++.+.+.+
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3579999999999999999887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.28  E-value=0.087  Score=32.41  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999877763

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=91.28  E-value=0.11  Score=38.95  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+..|+|.|++|+|||..++.+...+
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999998887543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=91.27  E-value=0.093  Score=34.84  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=21.3

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|-|--|||||+.++.+.++|.
T Consensus         5 I~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999884

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=91.25  E-value=0.078  Score=35.94  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-.|+|+|.+||||++.++.+.+.+
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHc
Confidence            3468999999999999999988744

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.23  E-value=0.12  Score=33.08  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..-.|+|.|.+|+|||...+.++.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345689999999999999888775

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.15  E-value=0.091  Score=32.29  Aligned_cols=23  Identities=17%  Similarity=0.085  Sum_probs=19.0

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34588899999999999887763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.14  E-value=0.14  Score=31.96  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             cCCCceEEecCCCCCccchhhhhhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .++.-.|++.|.+|+|||...+.++
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHh
Confidence            3556678999999999999998877

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.13  E-value=0.089  Score=33.17  Aligned_cols=22  Identities=27%  Similarity=0.518  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|.|.+|+|||...+.++.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            3578999999999999888764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.05  E-value=0.094  Score=32.59  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999888764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=91.00  E-value=0.093  Score=38.13  Aligned_cols=27  Identities=15%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|+|+|.+|+|||+.+..+.+.|-
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            345799999999999999999888764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=90.89  E-value=0.12  Score=39.05  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +..|+|.|++|+|||..++.+...+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999887653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.88  E-value=0.092  Score=33.17  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999887763

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=90.87  E-value=0.099  Score=32.72  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999888764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.85  E-value=0.079  Score=32.73  Aligned_cols=20  Identities=25%  Similarity=0.307  Sum_probs=17.9

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      .|+|.|.+|+|||...+.++
T Consensus         8 ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            57899999999999988876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.81  E-value=0.062  Score=33.19  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      ++.-.|++.|.+|+|||+..+.++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            455678999999999999988776

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=90.80  E-value=0.051  Score=44.99  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +..+.+.|.|+||||||+..+.+...+...+
T Consensus      1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A         1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp             CSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence            5688899999999999999999998765443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=90.80  E-value=0.093  Score=34.58  Aligned_cols=24  Identities=25%  Similarity=0.170  Sum_probs=20.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -.|.|+|..|||||+..+.+-+.|
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHh
Confidence            479999999999999999876643

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=90.76  E-value=0.09  Score=37.82  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..++.++|.|.+|+|||+..+.++..+..
T Consensus        51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~   79 (437)
T 1e9r_A           51 AEPRHLLVNGATGTGKSVLLRELAYTGLL   79 (437)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cCcceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35788999999999999998888876654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.76  E-value=0.11  Score=40.04  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=22.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      +.+.|.|.+|||||+..+.+.-.+...+
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~  406 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDE  406 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            5688999999999999998887654433

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=90.75  E-value=0.089  Score=39.22  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|+|+|.||+|||+.+..+.+.+-
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCC
Confidence            589999999999999999887764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=90.75  E-value=0.092  Score=36.06  Aligned_cols=37  Identities=16%  Similarity=0.385  Sum_probs=27.8

Q ss_pred             HHHHHhHhcC-CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLSDR-EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~~~-~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.++..- +..+|+|.|..|+|||..+..+++++.
T Consensus        46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455555542 235799999999999999988888763

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.71  E-value=0.084  Score=32.66  Aligned_cols=20  Identities=35%  Similarity=0.443  Sum_probs=9.0

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      .|++.|.+|+|||...+.++
T Consensus        10 ki~v~G~~~~GKssl~~~l~   29 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFS   29 (183)
T ss_dssp             EEEEECCCCC----------
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999988876

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=90.70  E-value=0.17  Score=36.02  Aligned_cols=27  Identities=22%  Similarity=0.206  Sum_probs=23.5

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|.|.|.+|+|||+..+.++..+..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            567899999999999999999987643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.69  E-value=0.088  Score=32.90  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|++.|.+|+|||...+.++.
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3478899999999999888764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=90.68  E-value=0.078  Score=33.15  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=19.2

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .--|+|.|.+|+|||...+.++.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34589999999999999888764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.67  E-value=0.1  Score=32.87  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..--|++.|.+|+|||...+.++.
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHh
Confidence            344689999999999999887764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=90.66  E-value=0.2  Score=35.36  Aligned_cols=30  Identities=23%  Similarity=0.172  Sum_probs=25.6

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ......|.|.|.+|+|||+..+.+...+..
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            456788999999999999999999877653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=90.65  E-value=0.16  Score=35.55  Aligned_cols=35  Identities=14%  Similarity=0.094  Sum_probs=26.1

Q ss_pred             HHHhHh-cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         28 DQVYLS-DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        28 y~~m~~-~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...++. -...+.++|.|.+|+|||..+..+...++
T Consensus        58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            334443 25678899999999999999887776554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=90.63  E-value=0.081  Score=35.26  Aligned_cols=23  Identities=22%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|+|.|.+|+|||+....++.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999988874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.63  E-value=0.11  Score=32.69  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            44588999999999999888764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=90.49  E-value=0.089  Score=40.30  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |.|.|++|||||+..+.+...+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            8899999999999999988765

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=90.46  E-value=0.16  Score=34.46  Aligned_cols=26  Identities=27%  Similarity=0.158  Sum_probs=20.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....++++|+.|+|||+.+-.++.-+
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            45678999999999999876555433

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.45  E-value=0.094  Score=33.07  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|.|.+|+|||...+.++.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            3589999999999999888764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.43  E-value=0.095  Score=33.28  Aligned_cols=32  Identities=16%  Similarity=0.063  Sum_probs=19.8

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..+.|.. .+.-.|+|.|.+|+|||...+.++.
T Consensus        15 ~~q~~~~-~~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           15 YFQGMPL-VRYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             ---------CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCC-CCcEEEEEECCCCcCHHHHHHHHHh
Confidence            3344433 3345688999999999999888774

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=90.41  E-value=0.085  Score=32.48  Aligned_cols=22  Identities=14%  Similarity=0.303  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|++.|.+|+|||...++++.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3478999999999999888764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.35  E-value=0.098  Score=32.88  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...+.++.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~   45 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYAD   45 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999887764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=90.34  E-value=0.15  Score=38.16  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=24.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|+++|.+|+|||+.+..+..+|..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            568899999999999999999988864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=90.31  E-value=0.27  Score=37.47  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=24.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..++|+|..|+|||+..+.++..|..
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~  230 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAES  230 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999887764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.24  E-value=0.11  Score=32.68  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=19.2

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34588999999999999888763

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.19  E-value=0.11  Score=32.65  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=20.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...-.|++.|.+|+|||...+.++.
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhc
Confidence            3345689999999999999888764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.18  E-value=0.11  Score=33.13  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...+.++.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            479999999999999887763

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.15  E-value=0.091  Score=33.23  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||...+.++.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999888763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.13  E-value=0.13  Score=42.17  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .+.+.+.|.|++|||||+..|.+.
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            467889999999999999999987

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.12  E-value=0.13  Score=31.87  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=18.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      --|++.|.+|+|||...+.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHhh
Confidence            35789999999999998655443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.10  E-value=0.099  Score=33.34  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|.|.+|+|||...+.++.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3578999999999999988763

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.08  E-value=0.11  Score=38.31  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=21.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.|.|++|+|||+..+.++..+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p   95 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNE   95 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence            37889999999999999998875543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.08  E-value=0.15  Score=32.27  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...-.|+|.|.+|+|||...+.++.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHh
Confidence            3445689999999999999888763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.07  E-value=0.13  Score=32.83  Aligned_cols=33  Identities=18%  Similarity=0.078  Sum_probs=23.5

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .+++.+-...+.--|++.|.+|+|||...+.+.
T Consensus        14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence            344444223344568999999999999998876

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.03  E-value=0.11  Score=33.00  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999887764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.01  E-value=0.11  Score=33.62  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.5

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            579999999999999988764

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=89.98  E-value=0.25  Score=34.68  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=26.6

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ..+..+..++...++|+|+.|.|||+.++.+.+.
T Consensus         8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~   41 (305)
T 2gno_A            8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY   41 (305)
T ss_dssp             HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3444555555789999999999999999888774

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=89.97  E-value=0.1  Score=33.30  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=17.7

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      -|+|.|.+|+|||...+.++
T Consensus        25 ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999998874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.95  E-value=0.13  Score=32.50  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|+|.|.+|+|||...+.++.
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999887763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=89.91  E-value=0.22  Score=35.31  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ......|+|+|..|+|||+.+..+...+..
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            345567899999999999999999887753

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=89.91  E-value=0.19  Score=36.80  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .....++|.|.+|+|||+.+..+...++.
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~  229 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVAT  229 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999888877764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=89.89  E-value=0.082  Score=33.20  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..--|++.|.+|+|||...+.+..
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            344688999999999999888763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.85  E-value=0.13  Score=32.82  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...++++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999888763

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=89.83  E-value=0.14  Score=40.71  Aligned_cols=26  Identities=15%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ...+.++|+|.+|+|||+..|.+.-.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            35678999999999999999997653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=89.80  E-value=0.21  Score=36.90  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=23.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..|+|.|.+|+|||+.+..+..+++.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999888764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.77  E-value=0.11  Score=33.13  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            34689999999999999887764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=89.77  E-value=0.086  Score=33.09  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=4.2

Q ss_pred             eEEecCCCCCccchhhhhhHHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~   60 (79)
                      -|++.|.+|+|||...+.++.-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999887643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=89.75  E-value=0.11  Score=33.84  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|+|.|.+|+|||...+.++.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44689999999999999888764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=89.70  E-value=0.051  Score=38.63  Aligned_cols=21  Identities=33%  Similarity=0.302  Sum_probs=18.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .++|.|++|||||+..+.+.-
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999987643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.61  E-value=0.16  Score=35.49  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=17.9

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..+|.|++|||||.....+.-
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            678999999999999887553

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=89.61  E-value=0.17  Score=34.23  Aligned_cols=25  Identities=28%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +-.|.|+|.+|||||+..+.+-+.|
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            4578999999999999998876644

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=89.54  E-value=0.1  Score=32.55  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999888764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=89.45  E-value=0.087  Score=33.01  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|++.|.+|+|||...+.++.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999888764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=89.40  E-value=0.1  Score=33.04  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=17.7

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      .|+|.|.+|+|||...+.++
T Consensus        35 ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSB
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999988765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.37  E-value=0.13  Score=32.23  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=18.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|.+|+|||...+.++.
T Consensus        20 ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999888774

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=89.32  E-value=0.15  Score=32.58  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=19.5

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..+.=.|++.|.+|+|||...+.++.
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence            34455789999999999999877763

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=89.30  E-value=0.16  Score=36.33  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.+|+|++|||||+....+.-
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999866553

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=89.30  E-value=0.13  Score=33.23  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=19.6

Q ss_pred             hHHHHHhHhc-CCCceEEecCCCCCccchhhhhhHH
Q psy17856         25 GGPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        25 ~~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..+-..|-.. ...--|+|.|.+|+|||...+.++.
T Consensus        15 ~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           15 VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             ------------CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhc
Confidence            3333445432 2234589999999999999888764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=89.28  E-value=0.12  Score=33.30  Aligned_cols=22  Identities=23%  Similarity=0.367  Sum_probs=19.1

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|++.|.+|+|||...+.++.
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4689999999999999988763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=89.24  E-value=0.21  Score=36.19  Aligned_cols=39  Identities=13%  Similarity=0.052  Sum_probs=29.5

Q ss_pred             hHHHHHhHh-c--CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         25 GGPDQVYLS-D--REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        25 ~~Ay~~m~~-~--~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      -.....++. .  .....++|.|++|+|||+.+..++..+..
T Consensus        46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            355556665 3  35678899999999999999888876653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.12  E-value=0.16  Score=32.83  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             CceEEecCCCCCccchhhhhhHH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.|+|.|.+|+|||...+.++.
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            34689999999999999888764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=89.11  E-value=0.24  Score=36.63  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=24.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ...|++.|.+|+|||+.+-.+..+|...
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4578889999999999999999888754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=89.07  E-value=0.19  Score=35.93  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=27.5

Q ss_pred             HHHHHhHh-c--CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLS-D--REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~-~--~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....++. .  .....++|.|++|+|||+.+..++..++
T Consensus        47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34445554 2  3567789999999999999888876554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=89.03  E-value=0.13  Score=32.53  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=19.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ...--|++.|.+|+|||...+.+..
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3445689999999999999876554

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=89.00  E-value=0.19  Score=35.55  Aligned_cols=35  Identities=17%  Similarity=0.057  Sum_probs=25.5

Q ss_pred             HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .....++..  .....++|.|++|+|||..+..+...
T Consensus       109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            334455532  45677899999999999998876654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=88.98  E-value=0.1  Score=35.38  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=18.4

Q ss_pred             CceEEecCCCCCccchhhhhhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      +-.|++.|++|+|||+..+.++
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            3468999999999999998754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=88.94  E-value=0.17  Score=40.11  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+.++|+|.+|+|||+..|.+.-..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            5789999999999999999987543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=88.90  E-value=0.15  Score=32.46  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|++.|.+|+|||...+.+..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3588999999999999877764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.75  E-value=0.18  Score=32.62  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...+.++.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            578999999999999887764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=88.74  E-value=0.15  Score=32.41  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|+|.|.+|+|||...+.++.
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999887763

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=88.70  E-value=0.23  Score=32.15  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=17.6

Q ss_pred             CceEEecCCCCCccchhhhhhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .+.++++|..|+|||+.+-.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            3568999999999999974444

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=88.61  E-value=0.16  Score=32.48  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||...+.++.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            478999999999999888763

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=88.56  E-value=0.24  Score=37.86  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+..++|+|..|+|||+....++..|...
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~  191 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAALIQM  191 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            35679999999999999999998888754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=88.42  E-value=0.12  Score=33.31  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.0

Q ss_pred             ceEEecCCCCCccchhhhhhH
Q psy17856         38 QSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l   58 (79)
                      -.|++.|.+|+|||...+.++
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~   36 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHL   36 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999998855

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=88.29  E-value=0.2  Score=33.30  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|.|||....+++.
T Consensus        15 KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCcCHHHHHHHHHh
Confidence            488899999999999988763

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=88.22  E-value=0.16  Score=41.16  Aligned_cols=20  Identities=30%  Similarity=0.533  Sum_probs=18.0

Q ss_pred             CCCceEEecCCCCCccchhh
Q psy17856         35 REDQSILCTGESGAGKTENT   54 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~   54 (79)
                      .+|+-++|+|-||||||..+
T Consensus        22 p~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           22 PKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             ETTSEEEEEESTTSSSHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHH
Confidence            36889999999999999887

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=88.21  E-value=0.19  Score=37.97  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +..|+|.|++|.|||..++.+-..+
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHH
Confidence            4579999999999999999887755

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=88.16  E-value=0.21  Score=34.92  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=25.9

Q ss_pred             HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .....++..  .....++|.|++|+|||..+..+....
T Consensus        94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            334445532  356788999999999999988776543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=88.15  E-value=0.13  Score=32.65  Aligned_cols=37  Identities=24%  Similarity=0.212  Sum_probs=24.2

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      |......++.+.. ++.-.|++.|.+|+|||...+.++
T Consensus        14 ~~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           14 LVPRGSLFSRIFG-KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             ---CCCGGGGTTT-TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             cchHHHHHHHhcc-CCccEEEEECCCCCCHHHHHHHHH
Confidence            3444444444443 344568999999999999988775

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.07  E-value=0.24  Score=36.85  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...-.|+|.|.+|+|||..++.+...+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            346689999999999999998877654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=88.03  E-value=0.39  Score=36.06  Aligned_cols=42  Identities=26%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....-++-..+..-.+.|.+.|.|.+|+|||+.++.+.+++.
T Consensus       158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            555667777777778999999999999999999999888764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=88.01  E-value=0.067  Score=34.32  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      -.|+|.|.+|+|||+..+.++.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHhC
Confidence            4688999999999999888764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=87.95  E-value=0.2  Score=33.05  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=17.7

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      -|+|.|.+|+|||...++++
T Consensus        39 kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47999999999999988776

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=87.88  E-value=0.32  Score=39.47  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             CCceEEecCCCCCccchhhhhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKV   57 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~   57 (79)
                      ..+.++|+|.+|+|||+..|.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4578999999999999999987

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=87.87  E-value=0.33  Score=32.72  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=20.1

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..-.|++.|++|+|||+..+.++.
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Confidence            345789999999999999888774

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=87.87  E-value=0.17  Score=34.20  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.5

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||+..+.+..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999988864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=87.87  E-value=0.2  Score=35.78  Aligned_cols=28  Identities=21%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHH
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      +....+-.|+|.|++|+|||+..+.++.
T Consensus        32 ~~~~~~~~I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           32 VKKGFEFTLMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             HHHCCEECEEECCCTTSCHHHHHHHHTT
T ss_pred             ecCCCCEEEEEEcCCCCCHHHHHHHHhC
Confidence            3344556689999999999999988643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=87.82  E-value=0.13  Score=42.16  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+.+.|.|.+|||||+..|.+.-.+
T Consensus       697 ~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          697 SLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             ETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999887544

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=87.57  E-value=0.21  Score=35.27  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=18.9

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|++.|.+|+|||+..+.++.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            678889999999999998886

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=87.55  E-value=0.2  Score=40.23  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=17.9

Q ss_pred             CCceEEecCCCCCccchhhh
Q psy17856         36 EDQSILCTGESGAGKTENTK   55 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k   55 (79)
                      .++-++|+|-||||||.++-
T Consensus        35 ~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           35 RDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             SSSEEEEESSTTSSHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHH
Confidence            68889999999999998873

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=87.53  E-value=0.25  Score=31.00  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=17.7

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .-.+|.|++|+|||.....+.-
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999776554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.53  E-value=0.27  Score=36.66  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...-.|+|.|.+|+|||..++.+...+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            346789999999999999998877554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=87.42  E-value=0.34  Score=34.90  Aligned_cols=37  Identities=22%  Similarity=0.101  Sum_probs=27.6

Q ss_pred             HHHHHhHh---cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLS---DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~---~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .....++.   -.....++|.|++|+|||..+..++..++
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34445554   23567899999999999999988776655

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.30  E-value=0.11  Score=32.97  Aligned_cols=24  Identities=17%  Similarity=0.154  Sum_probs=19.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      ++.-.|++.|.+|+|||...+.++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~   51 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYT   51 (204)
Confidence            445568999999999999987765

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=87.30  E-value=0.24  Score=34.30  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=25.6

Q ss_pred             HHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         26 GPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        26 ~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .....++..  .....++|.|++|+|||..+..+...
T Consensus        85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            444455533  35678899999999999998776653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=87.27  E-value=0.14  Score=32.69  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             CCceEEecCCCCCccchhhhhhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      ..=.|+|.|.+|+|||...+.++
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~   32 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVL   32 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCT
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            34468899999999999988876

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=87.26  E-value=0.31  Score=35.54  Aligned_cols=36  Identities=14%  Similarity=0.081  Sum_probs=26.8

Q ss_pred             HHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         28 DQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        28 y~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...++.+ .....++|.|.+|+|||..+..+....+.
T Consensus       190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~  226 (444)
T 2q6t_A          190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL  226 (444)
T ss_dssp             HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3344432 45678999999999999998887776653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.13  E-value=0.29  Score=36.43  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=22.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...-.|+|.|.+|+|||..++.+...+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            346789999999999999998877644

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=87.12  E-value=0.34  Score=36.69  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...|+|.|..|+|||+.+..+..+|..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~  127 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQR  127 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            447889999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	2e-17
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	4e-17
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	6e-17
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	4e-16
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	4e-16
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	2e-15

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 72.5 bits (177), Expect = 2e-17
 Identities = 34/43 (79%), Positives = 35/43 (81%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           L DREDQSILCTGESGAGKTENTKKVIQYLA VA+S      T
Sbjct: 86  LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDT 128

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 71.7 bits (175), Expect = 4e-17
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSS 73
           L+DRE+QSIL TGESGAGKT NTK+VIQY A +AAS  K   
Sbjct: 118 LTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKE 159

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 71.3 bits (174), Expect = 6e-17
 Identities = 29/48 (60%), Positives = 34/48 (70%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSSTAPHSE 79
           ++DRE+QS L TGESGAGKTENTKKVI YLA VA +  K    A   +
Sbjct: 116 VTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKK 163

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 68.6 bits (167), Expect = 4e-16
 Identities = 16/43 (37%), Positives = 30/43 (69%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
              +E+Q ++ +GESGAGKTE +KK++Q+L +V++++      
Sbjct: 81  RQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGER 123

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 68.6 bits (167), Expect = 4e-16
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGSST 74
           L DR++QS+L TGESGAGKTENTKKVIQYLA VA       S 
Sbjct: 120 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 162

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 66.7 bits (162), Expect = 2e-15
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 32  LSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKGS 72
             D  +QSI+ +GESGAGKT + K  ++Y A V+ S  + +
Sbjct: 89  ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEAN 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	99.76
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	99.76
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	99.75
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	99.73
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	99.73
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	99.72
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.49
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.32
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.31
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.3
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.29
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.22
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.2
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.15
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.13
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.07
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.04
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.03
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.94
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.89
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.87
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.83
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.83
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.62
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.61
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.59
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.46
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.44
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.43
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.41
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.39
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.38
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.37
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.34
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.32
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.29
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.29
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.28
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.25
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.23
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.23
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.19
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.17
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.16
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.14
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.08
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.05
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.01
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.97
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.94
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.93
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.92
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.88
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.86
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.85
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.85
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.84
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.83
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.82
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.81
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.74
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.74
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.66
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.65
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.58
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.57
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.53
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.51
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.45
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.44
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.41
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.32
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.3
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.29
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.26
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.24
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.23
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.23
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.22
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.16
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.13
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.09
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.97
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.85
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.82
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.81
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.8
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.73
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.67
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.61
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.47
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.47
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.46
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.44
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.44
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.42
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.22
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.21
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.17
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.16
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.11
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.1
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.89
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.87
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.87
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.77
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.71
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.7
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.68
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.66
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.62
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.51
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.48
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.44
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.36
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.31
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.28
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.23
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.18
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.15
d1okkd2	207	GTPase domain of the signal recognition particle r	93.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.99
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.92
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.79
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.76
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.75
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.75
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.69
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.64
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.63
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.63
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.62
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.61
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.6
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.59
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.57
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.56
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.54
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.53
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.44
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.38
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.37
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.32
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.24
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.18
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.18
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.09
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.06
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.04
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.01
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.94
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.9
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.85
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.8
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.79
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.76
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.74
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.74
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.72
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.67
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.65
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.6
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.56
d1ls1a2	207	GTPase domain of the signal sequence recognition p	91.54
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.37
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.32
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.27
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.27
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.25
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.08
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	90.76
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.75
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.62
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.47
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.31
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.31
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.28
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.23
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.23
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.13
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	89.99
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.98
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.54
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.12
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.11
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	88.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.56
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.38
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	88.36
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.26
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.11
d1tuea_	205	Replication protein E1 helicase domain {Human papi	87.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	87.92
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.79
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	87.72
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	87.63
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	87.56
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	87.32
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.91
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.6
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.99
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.76
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	85.7
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	84.65
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.64
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	84.52
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	84.35
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	84.1
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	84.0
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	83.96
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	83.92
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	83.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.8
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	83.18
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	82.8
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	82.66
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	82.27
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.84
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.59
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.38

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.76  E-value=9.2e-20  Score=140.78  Aligned_cols=65  Identities=55%  Similarity=0.670  Sum_probs=54.8

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPKG   71 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~~   71 (79)
                      +..|+.+.  ..||||   |++|++||+.|+..++||||||+|||||||||++|.+++||+.++++..++
T Consensus        59 ~~~y~~~~~~~~~PHi---f~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~~~~~~~~~~  125 (710)
T d1br2a2          59 IDMYKGKKRHEMPPHI---YAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK  125 (710)
T ss_dssp             HHHTTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHcCCCCCCCCChH---HHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCc
Confidence            45666443  479999   999999999999999999999999999999999999999999998776543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.76  E-value=1.4e-19  Score=140.09  Aligned_cols=64  Identities=47%  Similarity=0.574  Sum_probs=56.4

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKPK   70 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~~   70 (79)
                      +.+|+.+.  +.||||   |++|+.||+.|+..++||||||+|||||||||++|.+++||+.++++...
T Consensus        93 ~~~y~~~~~~~~~PHi---faiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~~~s~~~~~  158 (712)
T d1d0xa2          93 VDIFKGRRRNEVAPHI---FAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQA  158 (712)
T ss_dssp             HHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHcCCCcCCCCCcH---HHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhCCCcc
Confidence            56777544  479999   99999999999999999999999999999999999999999999876543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.75  E-value=2.5e-19  Score=139.86  Aligned_cols=64  Identities=52%  Similarity=0.625  Sum_probs=57.1

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASKP   69 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~~   69 (79)
                      .+..|+.+.  +.||||   |++|+.||+.|+..++||||||+|||||||||++|.+++||+.++.+..
T Consensus        90 ~~~~y~~~~~~~~pPHi---faiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~~~~~~~~  155 (794)
T d2mysa2          90 VVLAYRGKKRQEAPPHI---FSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGE  155 (794)
T ss_dssp             HHHHTTTCCTTSSCSCH---HHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHcCCCCCCCCCcH---HHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            356777544  468999   9999999999999999999999999999999999999999999986654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.73  E-value=6e-19  Score=137.62  Aligned_cols=62  Identities=48%  Similarity=0.568  Sum_probs=55.6

Q ss_pred             hhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+...  +.||||   |++|++||++|+..++||||||+|||||||||++|.+++||+.++...
T Consensus        89 ~~~y~~~~~~~~~PHi---yavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~~~~~~~  152 (789)
T d1kk8a2          89 IAKYRGKRKTEIPPHL---FSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAV  152 (789)
T ss_dssp             HHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHcCCCCCCCCCcH---HHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhccc
Confidence            56676443  468999   999999999999999999999999999999999999999999988654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=99.73  E-value=6.2e-19  Score=135.76  Aligned_cols=62  Identities=32%  Similarity=0.527  Sum_probs=55.1

Q ss_pred             hhhhhc--ccCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          4 RSAYQV--YLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         4 ~~~y~~--~~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      +..|+.  ....||||   |++|+.||++|+..++||||||+|||||||||++|.+++||+.++...
T Consensus        54 ~~~y~~~~~~~~~PHi---f~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~s~~~  117 (684)
T d1lkxa_          54 IKAYNGRYKYEMPPHM---YALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ  117 (684)
T ss_dssp             HHHHSSCCGGGSCCCH---HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHcCCCCCCCCChH---HHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence            456754  34579999   999999999999999999999999999999999999999999887543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=99.72  E-value=1.4e-18  Score=134.28  Aligned_cols=63  Identities=35%  Similarity=0.431  Sum_probs=56.0

Q ss_pred             hhhhhhccc--CCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhhcCC
Q psy17856          3 TRSAYQVYL--IPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVAASK   68 (79)
Q Consensus         3 ~~~~y~~~~--~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s~~~   68 (79)
                      .+.+|+.+.  +.||||   |++|+.||+.|+..++||||||+|||||||||++|.+++||+.++++.
T Consensus        61 ~~~~y~~~~~~~~~PHi---f~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~~~s~~~  125 (730)
T d1w7ja2          61 IINAYSGQNMGDMDPHI---FAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSA  125 (730)
T ss_dssp             HHHHHTTCCGGGSCCCH---HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHcCCCcCCCCCcH---HHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCC
Confidence            356676543  479999   999999999999999999999999999999999999999999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.49  E-value=2.7e-05  Score=46.96  Aligned_cols=29  Identities=21%  Similarity=0.231  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+...|+|+|-+|||||+.++.+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45677999999999999999999888753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=3.9e-05  Score=46.26  Aligned_cols=26  Identities=35%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .|+|+|.+|||||+.++.++++|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            57899999999999999999988754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.00013  Score=46.44  Aligned_cols=56  Identities=18%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             hhhhcccCCCCccccccccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856          5 SAYQVYLIPDEHIHYEVDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus         5 ~~y~~~~~~~phi~~~yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +.|++..--+--.   ..-.-+..+.++.......++|+|.+|+|||+.++.+++.+..
T Consensus         4 ~ky~P~~~~diig---~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~   59 (237)
T d1sxjd2           4 EKYRPKNLDEVTA---QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG   59 (237)
T ss_dssp             HHTCCSSTTTCCS---CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             hhhCCCCHHHccC---cHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcC
Confidence            4566544433211   2223466677777777777999999999999999999987643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.30  E-value=9.5e-05  Score=48.14  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+-|.....++...|+|+|.||||||+.++.+.+.|.
T Consensus        13 ~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          13 RSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             HHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3345567778889999999999999999999887664

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.29  E-value=0.00014  Score=46.64  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.++....-..++|+|.+|+|||+.++.+.+.+.
T Consensus        34 ~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          34 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            4455666667777899999999999999999987664

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=7.2e-05  Score=44.98  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+|+|+|++|+|||+.++.+++.|...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            468999999999999999999988654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.20  E-value=6.8e-05  Score=45.80  Aligned_cols=25  Identities=44%  Similarity=0.635  Sum_probs=22.5

Q ss_pred             EEecCCCCCccchhhhhhHHhHhhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      |+|+|++|+|||+.++.++..|...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7899999999999999999888653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.15  E-value=8.3e-05  Score=44.72  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++.|+|+|-+|||||+.++.+.+.|-
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46799999999999999999888653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=7.1e-05  Score=44.11  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +|+|+|.+|+|||+.+|.+.+.|
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999988765

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00014  Score=43.95  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+-|+|+|.+|||||+.++.+.+.|-
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4556789999999999999999988763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=6.5e-05  Score=46.29  Aligned_cols=28  Identities=36%  Similarity=0.476  Sum_probs=24.0

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +...|+|+|-+|||||+.++.+-+.|-.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4568899999999999999999887643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.03  E-value=0.00012  Score=44.05  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|+|.+|||||+.++.+.+-|
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999987755

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.94  E-value=0.00016  Score=43.04  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +.|+|+|-+|||||+.++.+++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999987653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.91  E-value=0.0002  Score=43.12  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |.-|+|.|.+|||||+.++.+.+.|-
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999988774

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.00014  Score=43.62  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-|+|+|.+|+|||+.++.+.+.|
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999988765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.87  E-value=0.00016  Score=43.07  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|+|.+|+|||+.++.+.+.+
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00046  Score=43.91  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=28.6

Q ss_pred             HHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.++....-..++|+|..|+|||+.++.+.+.+.
T Consensus        24 ~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          24 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            3344555556666799999999999999999987654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.83  E-value=0.00021  Score=44.66  Aligned_cols=28  Identities=14%  Similarity=0.410  Sum_probs=24.2

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..+.+.|+|.|.+|||||+.++.+.+.+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999998765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.62  E-value=0.00032  Score=42.26  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=20.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      =.|+|+|.+|+|||+.++.+-+.|
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            348999999999999999987654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.61  E-value=0.0005  Score=42.03  Aligned_cols=27  Identities=19%  Similarity=0.078  Sum_probs=23.8

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .|.|+|-+|||||+....++..|...+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            467999999999999999999998653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.59  E-value=0.00034  Score=42.75  Aligned_cols=26  Identities=27%  Similarity=0.188  Sum_probs=21.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      -|-|+|.+|||||+.++.+...|...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccc
Confidence            35599999999999999998877643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.46  E-value=0.00047  Score=41.68  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|+|.|-+|+|||+.++.+.+.|.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999988875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00025  Score=47.57  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ...+.|.|.|+||||||+..+.++..+...+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~   57 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN   57 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCCCCC
Confidence            4578899999999999999999998776443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.43  E-value=0.00078  Score=42.69  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....+++|+|++|.|||..++.+.+.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3457899999999999999999988774

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.42  E-value=0.00063  Score=41.83  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +.|+|.|-+|+|||+.++.+-+.|
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            568899999999999999987655

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.001  Score=42.43  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=25.1

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..++++|+|.+|.|||..++.+.+.+-.
T Consensus        32 ~~~~~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          32 GEVLDHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             TCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHhccCC
Confidence            445678999999999999999998877643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.39  E-value=0.0008  Score=41.56  Aligned_cols=26  Identities=35%  Similarity=0.525  Sum_probs=23.0

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .-|++.|-+|+|||+.++.+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999988854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.00063  Score=42.99  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |||+|.||+||++..+.+++.+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            88999999999999999988654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.37  E-value=0.0013  Score=41.80  Aligned_cols=38  Identities=21%  Similarity=0.089  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCc----eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         27 PDQVYLSDREDQ----SILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        27 Ay~~m~~~~~~Q----sIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .++.+.......    .++|+|.+|.|||..++.+.+.|...
T Consensus        32 l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~   73 (287)
T d1w5sa2          32 YLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEA   73 (287)
T ss_dssp             HHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhh
Confidence            344444443333    35778999999999999999887543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0017  Score=41.25  Aligned_cols=37  Identities=22%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             HHHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         27 PDQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        27 Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+.++.......++|+|.+|+|||+.++.+.+-+..
T Consensus        26 ~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          26 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             HHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            3445555666667999999999999999998876653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.32  E-value=0.00033  Score=47.17  Aligned_cols=30  Identities=17%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|+||||||+.++.++.++...
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~   68 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYDID   68 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccCCC
Confidence            568899999999999999999998876543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.29  E-value=0.00046  Score=46.16  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|+||||||+..+.++..+...+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~   56 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTA   56 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhCCCC
Confidence            5688999999999999999999988775444

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00064  Score=42.67  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|+|.||+||++..+.+++-+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999987653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.00067  Score=42.12  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .-|+|+|.||+||++.++.+++.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4589999999999999999887654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.25  E-value=0.00065  Score=40.79  Aligned_cols=25  Identities=20%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-|+|+|.+|||||+.++.+.+-|
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999998886543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.00046  Score=46.40  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|+||||||+..+.++..+...+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~   68 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQPTG   68 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccCCCc
Confidence            5788999999999999999999988765433

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.23  E-value=0.00075  Score=41.98  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -.|+|.|.+|||||+.++.+.+.+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            358999999999999999988776

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0027  Score=40.63  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=29.6

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+...+-.++++|.|..|.|||+.++.+.+.|.+..
T Consensus        17 ~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~   52 (207)
T d1a5ta2          17 SYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (207)
T ss_dssp             HHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             HHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccc
Confidence            334456688999999999999999999999887543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0022  Score=41.51  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+...+-.++++|+|++|.|||..++.+.+.|...
T Consensus        27 ~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          27 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             HHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             HHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            34445668889999999999999999998887643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.16  E-value=0.001  Score=40.83  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.9

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|.+|||||+..|.+-+.|
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8888999999999999987766

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.14  E-value=0.0011  Score=40.49  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|.+|||||+.++.+.+.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999987765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.11  E-value=0.0012  Score=45.64  Aligned_cols=32  Identities=19%  Similarity=0.485  Sum_probs=25.0

Q ss_pred             HHhHhcCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         29 QVYLSDREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        29 ~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.+++.+.|  |+|+|..|||||+..+.++.++.
T Consensus       160 ~~~v~~~~n--ili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         160 KDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHHHTCC--EEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHhCCC--EEEEeeccccchHHHHHHhhhcc
Confidence            344444554  99999999999999998887763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0011  Score=41.37  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-..|+|.|.+|||||+.++.+.+.+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998876

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.05  E-value=0.0012  Score=40.60  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|.+|||||+.++.+.+.|
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999988776

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.04  E-value=0.00049  Score=46.50  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=25.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|+||||||+..+.++..+...
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~   71 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYDVT   71 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCCcc
Confidence            578899999999999999999988766543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.01  E-value=0.0032  Score=40.13  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+|.|.+|+|||+.++.+...+
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3469999999999999999887654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0012  Score=41.55  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             eEEecCCCCCccchhhhhhHHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~   60 (79)
                      -|||+|.||+||++..+.+++-
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998853

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0017  Score=40.93  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .|-|+|.+|||||+.++.+.+.|.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            467999999999999999988764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0015  Score=40.84  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .....||++|-+|||||+.++.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999987754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.92  E-value=0.0027  Score=43.03  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=23.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...+|+|.|.+|+|||+.+|.+.+.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            56889999999999999999988765

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.88  E-value=0.0018  Score=40.87  Aligned_cols=40  Identities=18%  Similarity=-0.041  Sum_probs=29.0

Q ss_pred             cccchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         21 VDLTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        21 yaia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |-.-+..-..+... ..++|+|.|++|+|||...+.+++-+
T Consensus        14 f~GR~~el~~l~~~-~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          14 FFDREKEIEKLKGL-RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SCCCHHHHHHHHHT-CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhc-cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            33444455555543 56889999999999999998877644

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.86  E-value=0.0017  Score=39.60  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|-+|+|||+..+.+-+.|
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6777999999999999887665

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.85  E-value=0.00054  Score=44.39  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|.+|||||+..+.++..+-..+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~   55 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLK   55 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccccCC
Confidence            4678899999999999999999987665433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.85  E-value=0.0015  Score=40.49  Aligned_cols=29  Identities=24%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..+.--|+|.|-.|||||+.++.+.+.|-
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44556799999999999999999988774

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.84  E-value=0.0017  Score=40.91  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      |+|+|-.|||||+.++.+++++.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            78999999999999999998774

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.83  E-value=0.0018  Score=39.94  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|..|||||+.++.+.+.|
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999988776

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0015  Score=40.11  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|.+|||||+.++.+.+.+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0018  Score=40.05  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|.+|||||+.++.+.+.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999988755

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.74  E-value=0.002  Score=40.35  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|.|.|.+|||||+.++.+.+.|-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            366889999999999999987663

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.001  Score=45.29  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=26.0

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|+||||||+..+.++..+...+
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~   90 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELEASE   90 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCSE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCcCCC
Confidence            4788899999999999999999987665433

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0024  Score=41.11  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-|+|+|.||+||++..+.+++-.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            458999999999999999988653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.65  E-value=0.0036  Score=43.74  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..--+|++.|.+|.||||.+|.+-+++
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhc
Confidence            355679999999999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0027  Score=39.34  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|.+||||++.++.+.+.|
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999988766

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.57  E-value=0.0013  Score=44.06  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|+||||||+..+.+...+...+
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~s   60 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE   60 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Confidence            4678899999999999999999887665433

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.53  E-value=0.0027  Score=42.25  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+...+.|.|+||||||+..+.+.-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            467889999999999999988665543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0033  Score=40.06  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ....++|+|.+|+|||+.++.+.+.+
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.45  E-value=0.0029  Score=39.07  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -|+|.|..|||||+.++.+.+.+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999988765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.44  E-value=0.0028  Score=39.42  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=22.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +...|+|.|.+||||++.++.+.+.+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999987654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0033  Score=39.92  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+.++|+|..|+|||..++.+.+.+.
T Consensus        31 ~~~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          31 RDLPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             TCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHhhc
Confidence            3466799999999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.004  Score=37.22  Aligned_cols=34  Identities=18%  Similarity=0.064  Sum_probs=24.8

Q ss_pred             HHHhHhc--CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         28 DQVYLSD--REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        28 y~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...++..  ...+.++|+|++|+|||..+-.++-..
T Consensus        12 LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3445553  468899999999999998876655433

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.30  E-value=0.0078  Score=34.33  Aligned_cols=20  Identities=25%  Similarity=0.328  Sum_probs=17.2

Q ss_pred             CCCceEEecCCCCCccchhh
Q psy17856         35 REDQSILCTGESGAGKTENT   54 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~   54 (79)
                      +++|..+|..++|+|||..+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            45788999999999999775

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0019  Score=43.09  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|+||||||+..+.+.-.+...
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~   53 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLETIT   53 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence            467889999999999999999887655433

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.26  E-value=0.0029  Score=40.74  Aligned_cols=24  Identities=38%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....|+|+|+||+|||+.+-.+++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999866654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.24  E-value=0.0033  Score=40.09  Aligned_cols=24  Identities=38%  Similarity=0.619  Sum_probs=19.8

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .++.|+|+|+||+|||+.+-.+++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999988755543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0032  Score=42.13  Aligned_cols=28  Identities=29%  Similarity=0.184  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+...+.|.|+||||||+..+.+.-.+.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            4567889999999999999988876443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.23  E-value=0.0032  Score=42.10  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.+.|.|+||||||+..+.+.-.+.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            3577889999999999999998876554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.22  E-value=0.0052  Score=44.06  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=21.7

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|++.|.+|+|||+.+|.+-+.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHh
Confidence            3369999999999999999988755

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.21  E-value=0.0039  Score=38.66  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |+|.|--|||||+.++.+.++|..
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999998864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.16  E-value=0.0042  Score=39.87  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....|+|+|+||+|||+.+-.+++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            457899999999999998766553

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0043  Score=38.20  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.5

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      |+|.|..|||||+.++.+.+.+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7788999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.09  E-value=0.004  Score=41.80  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ++.+.+.|.|+||||||+..+.+.-.+
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            467889999999999999999887654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.97  E-value=0.0046  Score=36.15  Aligned_cols=20  Identities=40%  Similarity=0.361  Sum_probs=17.7

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |+|.|++|+|||+..+++..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999988753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.85  E-value=0.0046  Score=38.83  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEecCCCCCccchhhhhhHHhH
Q psy17856         39 SILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .|+|.|..|||||+.++.+.+.+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            47788999999999999988754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.0056  Score=38.95  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.0

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      -..++|+|.+|.|||+.++.+.+.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999988755

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.81  E-value=0.0021  Score=42.87  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+.|.|+||||||+..+.+.-.+...
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~   53 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHVPD   53 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence            467889999999999999999987765433

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.80  E-value=0.013  Score=37.73  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=20.9

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ..++|.|.+|+|||..++.+.+.+.
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhc
Confidence            4589999999999999887776654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.73  E-value=0.008  Score=37.94  Aligned_cols=28  Identities=29%  Similarity=0.430  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..-.|++.|+-|||||+.+|-+++.|.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3444678899999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.67  E-value=0.0071  Score=39.77  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-+|+|.|.+|+|||..++.+.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcc
Confidence            3579999999999999998877543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.61  E-value=0.01  Score=40.69  Aligned_cols=28  Identities=29%  Similarity=0.318  Sum_probs=20.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +.-.|-|+|-||||||+.++.+.+.|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            3446899999999999999998887754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.47  E-value=0.0035  Score=42.06  Aligned_cols=28  Identities=18%  Similarity=0.157  Sum_probs=22.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      ..+.|.|+||||||+..+.+...+...+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~   52 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDR   52 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCc
Confidence            3567789999999999999887665433

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.0049  Score=38.77  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|+|-|-.|||||+.++.+.++|-
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.0058  Score=37.68  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=17.3

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |-|+|-+|||||+.++.+-+
T Consensus         6 IgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999987755

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.44  E-value=0.0042  Score=41.66  Aligned_cols=29  Identities=24%  Similarity=0.206  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ++.+.+.|.|+||||||+..+.+.-.+..
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCcCC
Confidence            46788999999999999999988775543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.0067  Score=39.83  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ++.+.+.|.|++|||||+..+.+.-
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4678899999999999999887765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.42  E-value=0.013  Score=37.30  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      -+.+...+...+++|+|++|+||++.++.+.+++...
T Consensus         6 l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~   42 (198)
T d2gnoa2           6 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKF   42 (198)
T ss_dssp             HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            3567778889999999999999999999988877533

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.22  E-value=0.0036  Score=41.57  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      .+.+.+.|.|.+|||||+..+.+.-.+...+
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~   60 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQK   60 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence            4578899999999999999999887665433

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.21  E-value=0.02  Score=40.02  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....=.|+|+|..|||||++...+++++.
T Consensus       155 ~~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         155 KRPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            34556689999999999999999999874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.0083  Score=37.61  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             eEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      =|+|.|--|||||+.++.+.++|...
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            48899999999999999999988654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.0076  Score=37.32  Aligned_cols=32  Identities=16%  Similarity=0.111  Sum_probs=23.7

Q ss_pred             HHHHhHhc--CCCceEEecCCCCCccchhhhhhH
Q psy17856         27 PDQVYLSD--REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        27 Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      ....++..  .+.+.++|+|++|+|||..+-.++
T Consensus        22 ~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          22 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             HHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            33445554  478899999999999998765544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.011  Score=36.97  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=25.8

Q ss_pred             HHHHhHhc--CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         27 PDQVYLSD--REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        27 Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ....++..  ...+.++|.|++|+|||..+-.++..
T Consensus        25 ~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          25 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            33445553  47888999999999999998776643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.10  E-value=0.0091  Score=34.94  Aligned_cols=21  Identities=38%  Similarity=0.411  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||+..++++.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999887653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.89  E-value=0.011  Score=35.57  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      +|+|.|.+|+|||+..+.++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.87  E-value=0.0046  Score=41.24  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ++.+.+.|.|++|||||+..+.+.-.+...
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~   57 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLKAD   57 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCcCC
Confidence            456788999999999999999988765433

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.87  E-value=0.011  Score=36.98  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=25.5

Q ss_pred             HHHhHhc--CCCceEEecCCCCCccchhhhhhHHhH
Q psy17856         28 DQVYLSD--REDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        28 y~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ...|+..  ...+.++|.|++|+|||..+-.++...
T Consensus        25 LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3445554  478889999999999999886665444

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.017  Score=36.81  Aligned_cols=28  Identities=25%  Similarity=0.419  Sum_probs=24.2

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~~s   65 (79)
                      --|+|.|--|||||+.++.+.++|....
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g   31 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAG   31 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            3588899999999999999999987643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.71  E-value=0.013  Score=38.43  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..-+|+|.|.+|+|||..++.+...+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHh
Confidence            45679999999999999998877654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.018  Score=38.17  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.+-+|++.|.+|+|||..++.+.+.+.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            3467899999999999999998887653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.013  Score=33.83  Aligned_cols=20  Identities=30%  Similarity=0.323  Sum_probs=17.9

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |+|.|.+|+|||....+++.
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.018  Score=38.97  Aligned_cols=26  Identities=38%  Similarity=0.478  Sum_probs=22.6

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -.++++.|.+|.|||+.++.+-+.+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            34789999999999999999888763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.62  E-value=0.0068  Score=40.17  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .+.+.+-|.|.+|||||+..+.+.-.+...
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~p~   55 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS   55 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            457788899999999999999888766443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.51  E-value=0.015  Score=35.80  Aligned_cols=56  Identities=14%  Similarity=0.032  Sum_probs=34.2

Q ss_pred             chhhhhhcccCCCCccccccccchHHHHHhHhc--CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856          2 STRSAYQVYLIPDEHIHYEVDLTGGPDQVYLSD--REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus         2 ~~~~~y~~~~~~~phi~~~yaia~~Ay~~m~~~--~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ||...|...... +-|+.++.--|    .++..  ...+.++|.|++|+|||..+-.++-.++
T Consensus         2 ~~~~~~~~~~~~-~~i~TG~~~LD----~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2           2 SGIDLLKQRSTV-WKLSTSSSELD----SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             CTHHHHHHHTTC-CEECCSCHHHH----HHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CHHHHHHhhCCC-ceecCCCHHHH----HhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            455555553222 33444443333    34443  3678899999999999998777665444

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.48  E-value=0.016  Score=38.25  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-.|+|.|.+|+|||..++.+...+
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4569999999999999999887654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.44  E-value=0.031  Score=32.48  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=17.1

Q ss_pred             CCCceEEecCCCCCccchhh
Q psy17856         35 REDQSILCTGESGAGKTENT   54 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~   54 (79)
                      .+.|..+|.+..|+|||+..
T Consensus         6 ~~~~~~ll~apTGsGKT~~~   25 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKV   25 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHH
T ss_pred             cCCCEEEEEeCCCCCHHHHH
Confidence            45688999999999999764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.40  E-value=0.013  Score=36.87  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=17.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|-|+|..|||||+.++.+-+
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999887643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.36  E-value=0.019  Score=36.09  Aligned_cols=27  Identities=33%  Similarity=0.528  Sum_probs=22.6

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....++|.|++|+|||..+..++..++
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            567889999999999999877776654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.01  Score=40.63  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+++.++|.|.+|+|||+..+.++..+..
T Consensus        47 ~~~~~H~~I~G~tGsGKT~~l~~li~~~~~   76 (433)
T d1e9ra_          47 DAEPRHLLVNGATGTGKSVLLRELAYTGLL   76 (433)
T ss_dssp             GGGGGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CcccceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence            345677899999999999998877766553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.28  E-value=0.016  Score=34.93  Aligned_cols=20  Identities=35%  Similarity=0.385  Sum_probs=17.8

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|++|+|||...++++.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78899999999999988764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.23  E-value=0.018  Score=37.91  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             CceEEecCCCCCccchhhhhhHHhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .-.|+|.|.+|+|||..++.+.+.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc
Confidence            4579999999999999999888654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.015  Score=35.41  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=16.7

Q ss_pred             EEecCCCCCccchhhhhh
Q psy17856         40 ILCTGESGAGKTENTKKV   57 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~   57 (79)
                      |+|.|++|+|||...+++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            788999999999999887

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.034  Score=37.37  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=25.7

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +..+..+.+++.|++|.|||....-+.+-+..
T Consensus        34 L~r~~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          34 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            44566678999999999999998887776654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.017  Score=34.65  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |+|.|.+|+|||...++++.
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999988763

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.11  E-value=0.029  Score=36.38  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=22.3

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +...|++.|.+|+|||+++-++-.++.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999887776664

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.023  Score=38.95  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..-.|-|+|.+|||||+.++.+...|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3445778999999999999999888775

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.019  Score=36.27  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=17.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|.|+|-.|||||+.++.+-+
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            467999999999999986643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.016  Score=34.90  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...++++.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999888764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.021  Score=34.18  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|++|+|||...++++.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999887764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.76  E-value=0.026  Score=38.33  Aligned_cols=24  Identities=42%  Similarity=0.512  Sum_probs=21.8

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++++.|.+|.|||+.++.+-+.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            689999999999999999988873

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.016  Score=36.53  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=23.3

Q ss_pred             ceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      +-|+|-|--|||||+.++.+.++|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            46899999999999999999998864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.75  E-value=0.022  Score=34.09  Aligned_cols=20  Identities=15%  Similarity=0.418  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|++|+|||...++++.
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999987764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.024  Score=35.08  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.7

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      +|+|.|..|+|||...++++.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999888774

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.033  Score=37.81  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .--|-|+|-+|||||+.+..++..|...
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~   54 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEK   54 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            3355689999999999999998887553

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.69  E-value=0.04  Score=35.37  Aligned_cols=28  Identities=25%  Similarity=0.337  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +..+-++|.|.+|+|||..+..++..++
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a   60 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhh
Confidence            5678999999999999988777765554

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.023  Score=34.18  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.1

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|++|+|||....+++.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999888764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.63  E-value=0.023  Score=33.79  Aligned_cols=20  Identities=35%  Similarity=0.441  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.023  Score=34.33  Aligned_cols=20  Identities=20%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|++|+|||...++++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78889999999999888763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.025  Score=34.54  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..|+|.|.+++|||+....++.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999888864

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.61  E-value=0.038  Score=33.59  Aligned_cols=31  Identities=6%  Similarity=0.076  Sum_probs=25.8

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .++.-+|+++|.||+||++.++-++.-|...
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~   33 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQF   33 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTS
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            3566789999999999999999888777654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.023  Score=34.01  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999888764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.019  Score=34.37  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|++|+|||...++++.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378889999999999888764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.57  E-value=0.018  Score=34.28  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=20.6

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ++.--|++.|.+|+|||+...++..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4456789999999999999987753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.56  E-value=0.039  Score=35.87  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=17.4

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|++.|.+|+|||+++-++-.++.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455578899999999999877766554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.54  E-value=0.02  Score=36.48  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|+|.|--|||||+.++.+.++|.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            489999999999999999998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.53  E-value=0.02  Score=35.11  Aligned_cols=20  Identities=30%  Similarity=0.410  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|++|+|||...++++.
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999887764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.022  Score=34.13  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=17.2

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78889999999999877653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.025  Score=34.48  Aligned_cols=20  Identities=20%  Similarity=0.207  Sum_probs=17.7

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78899999999999888764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.38  E-value=0.025  Score=34.15  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=17.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|++.|++|+|||...++++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478889999999999887763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.38  E-value=0.032  Score=32.88  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=21.4

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHH
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      .++.--|+|.|.+|+|||+...++..
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            35566799999999999999887753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.37  E-value=0.025  Score=34.39  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|++|+|||...++++.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999887763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.032  Score=36.38  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +....|++.|.+|+|||++.-++-.++.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455688999999999999877765553

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.022  Score=33.89  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=17.7

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|+.|+|||...++++.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.022  Score=34.27  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999887764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.28  E-value=0.021  Score=34.63  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             HHHhHhcCCCceEEecCCCCCccchhhhhhH
Q psy17856         28 DQVYLSDREDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        28 y~~m~~~~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      +..++..++.=-|++.|.+|+|||+..+++.
T Consensus         8 ~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_           8 FDKLWGSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             HGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             HHHHhCCCceEEEEEECCCCCCHHHHHHHHh
Confidence            4445556667778999999999999988764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.24  E-value=0.037  Score=36.00  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....|++.|.+|+|||+++-++-.++.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345589999999999999877776664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.18  E-value=0.028  Score=33.66  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=17.8

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.028  Score=33.89  Aligned_cols=20  Identities=20%  Similarity=0.549  Sum_probs=17.7

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.09  E-value=0.033  Score=36.76  Aligned_cols=25  Identities=20%  Similarity=0.189  Sum_probs=21.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHHh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +++..+|.|.||.|||+..+.++.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            5678899999999999999988753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.06  E-value=0.028  Score=34.03  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=18.4

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...+.++.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.04  E-value=0.025  Score=33.78  Aligned_cols=20  Identities=35%  Similarity=0.567  Sum_probs=17.5

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999987763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.01  E-value=0.072  Score=36.88  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=27.5

Q ss_pred             HHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         27 PDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        27 Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      +.+.++.+ .+..+++|.|..|.|||..++.+..++-
T Consensus       143 ~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         143 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            33444443 3445999999999999999999988774

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.024  Score=33.39  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=17.9

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|++++|||+..+.++.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999998887763

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.031  Score=33.45  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=17.6

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78899999999999888763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.94  E-value=0.031  Score=33.46  Aligned_cols=20  Identities=20%  Similarity=0.441  Sum_probs=17.2

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|++|+|||...++++.
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999998887663

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.90  E-value=0.032  Score=33.29  Aligned_cols=20  Identities=20%  Similarity=0.199  Sum_probs=16.9

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      -|+|.|.+|+|||...+++.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999887764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.011  Score=34.93  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=17.7

Q ss_pred             EEecCCCCCccchhhhhhHHhH
Q psy17856         40 ILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .+|.|++|||||.....+.-.|
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999987766444

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.82  E-value=0.033  Score=33.58  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999887653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.80  E-value=0.029  Score=33.31  Aligned_cols=20  Identities=40%  Similarity=0.390  Sum_probs=17.2

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      -|+|.|.+|+|||...+++.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48899999999999887764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.027  Score=34.05  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=17.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...++++.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999998877663

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.027  Score=34.46  Aligned_cols=19  Identities=21%  Similarity=0.226  Sum_probs=16.7

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      |+|.|.+|+|||...++++
T Consensus        12 i~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7889999999999887765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.033  Score=33.47  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=17.5

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78889999999999887764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.028  Score=33.56  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=17.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||...++++.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378889999999999887763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.028  Score=33.95  Aligned_cols=20  Identities=20%  Similarity=0.217  Sum_probs=17.0

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||....+++.
T Consensus         5 ivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999877654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.69  E-value=0.058  Score=32.85  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=19.5

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ....++|.|++|+|||..+-.++-
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            567789999999999988765443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.029  Score=33.75  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=17.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -||+.|.+|+|||...+++..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378899999999999887753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.035  Score=33.29  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=17.5

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...++++.
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999887654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.60  E-value=0.035  Score=33.19  Aligned_cols=19  Identities=32%  Similarity=0.630  Sum_probs=17.1

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      |++.|.+|+|||...++++
T Consensus         5 i~~vG~~~vGKSsLi~~~~   23 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7889999999999988876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.034  Score=33.78  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=16.9

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      |+|.|.+|+|||+..++++
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7889999999999988765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.076  Score=34.23  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=26.2

Q ss_pred             HhHhcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         30 VYLSDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        30 ~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ..+..+....++|.|++|.|||....-+.+-+..
T Consensus        36 ~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          36 QVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            3344556667899999999999999888776654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=91.54  E-value=0.054  Score=34.92  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=21.2

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ...|++.|.+|+|||+++-++-.++.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34578899999999999988777665

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.036  Score=33.31  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=16.9

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||...+++..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78889999999998877653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.036  Score=33.05  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=18.0

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |+|.|.+++|||+..+.+..
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67899999999999999874

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.27  E-value=0.041  Score=36.00  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      ..+.-|+|.||.|+||+..++.+-.+
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            45667999999999999998887653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.27  E-value=0.034  Score=33.32  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.5

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|+|.|.+|+|||+..+.+..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.08  E-value=0.041  Score=32.92  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=17.0

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      -|++.|..|+|||...+++.
T Consensus         4 KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37889999999999987754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.046  Score=32.96  Aligned_cols=20  Identities=25%  Similarity=0.546  Sum_probs=17.5

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||+..++++.
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999887754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=0.038  Score=34.06  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=17.5

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |+|.|..|+|||...++++.
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78889999999999887764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.036  Score=33.39  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=8.3

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||....+++.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999987763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.04  Score=33.08  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=17.1

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      |++.|.+|+|||...++++
T Consensus         8 I~lvG~~~vGKTsll~~~~   26 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999888765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=90.76  E-value=0.036  Score=33.87  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             eEEecCCCCCccchhhhhhH
Q psy17856         39 SILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l   58 (79)
                      .|+|.|.+|+|||+..+.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            48899999999999999887

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.048  Score=32.91  Aligned_cols=20  Identities=40%  Similarity=0.561  Sum_probs=17.4

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|..|+|||...++++.
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999887653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.042  Score=33.68  Aligned_cols=20  Identities=20%  Similarity=0.207  Sum_probs=17.1

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |++.|.+|+|||....+++.
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999877653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.47  E-value=0.048  Score=34.54  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=17.6

Q ss_pred             ceEEecCCCCCccchhhhhhH
Q psy17856         38 QSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .-|||.|.+|+|||...+++.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999887753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.31  E-value=0.042  Score=35.90  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=20.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ..-.|+|.|.+|+|||...+.++.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            445789999999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.052  Score=32.76  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=16.9

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      |++.|.+|+|||...+++.
T Consensus         6 v~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7889999999999988765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.05  Score=34.88  Aligned_cols=22  Identities=36%  Similarity=0.427  Sum_probs=18.8

Q ss_pred             eEEecCCCCCccchhhhhhHHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .++|+|=-|||||+..+++++.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4689999999999988888763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.23  E-value=0.077  Score=34.83  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhHHh
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      .....|.|.|..|.|||+.++.+++.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34556789999999999999998764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.21  Score=31.79  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=27.6

Q ss_pred             HhcCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         32 LSDREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        32 ~~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.+....-|+++|.-|.|||+.+-.+-..|+..
T Consensus        15 ~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~   47 (279)
T d1ihua2          15 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM   47 (279)
T ss_dssp             HHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            346677888999999999999998888888754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.17  E-value=0.042  Score=32.78  Aligned_cols=21  Identities=38%  Similarity=0.385  Sum_probs=17.9

Q ss_pred             ceEEecCCCCCccchhhhhhH
Q psy17856         38 QSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l   58 (79)
                      =-|++.|.+|+|||...+++.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.13  E-value=0.032  Score=33.60  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             CCCceEEecCCCCCccchhhhhhH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      ++.=-|++.|.+|+|||...++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHh
Confidence            344568999999999999988765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.99  E-value=0.059  Score=33.92  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      .|.|+|--||||++.++++..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.98  E-value=0.037  Score=32.76  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|+|.|.+++|||...+.+..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3489999999999999888754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.54  E-value=0.066  Score=32.17  Aligned_cols=21  Identities=14%  Similarity=0.347  Sum_probs=18.0

Q ss_pred             eEEecCCCCCccchhhhhhHH
Q psy17856         39 SILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~   59 (79)
                      -|+|.|.+|+|||+..+.++.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            478889999999999988763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.21  E-value=0.032  Score=32.75  Aligned_cols=20  Identities=15%  Similarity=0.461  Sum_probs=17.9

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |+|.|.+++|||+..+.+..
T Consensus         3 I~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78899999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.12  E-value=0.023  Score=37.74  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=21.2

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      +++..+|.|.||.|||+..+.++.-+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            56777889999999999999988643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.04  Score=33.21  Aligned_cols=19  Identities=32%  Similarity=0.629  Sum_probs=16.5

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      |++.|.+|+|||...++++
T Consensus         6 i~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7888999999999987664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=0.15  Score=34.83  Aligned_cols=31  Identities=23%  Similarity=0.146  Sum_probs=26.9

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      ..+...|-|+|..|+|||+....+++++...
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            4567789999999999999999999888754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.087  Score=32.16  Aligned_cols=22  Identities=14%  Similarity=0.303  Sum_probs=18.5

Q ss_pred             ceEEecCCCCCccchhhhhhHH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      --|++.|.+|+|||...++++.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999887664

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.38  E-value=0.065  Score=33.12  Aligned_cols=30  Identities=20%  Similarity=0.179  Sum_probs=22.7

Q ss_pred             chHHHHHhHhcCCCceEEecCCCCCccchhhhh
Q psy17856         24 TGGPDQVYLSDREDQSILCTGESGAGKTENTKK   56 (79)
Q Consensus        24 a~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~   56 (79)
                      =.+|+..+..   ++++++...+|+|||+.+-.
T Consensus        30 Q~~ai~~l~~---~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          30 QAEAVEKVFS---GKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             CHHHHHHHTT---CSCEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCCEEEEcCCCCchhHHHHH
Confidence            4567777664   45689999999999987643

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.36  E-value=0.22  Score=33.16  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=26.6

Q ss_pred             ccccccch-HHHHHhHhc---CCCceEEecCCCCCccchhhhhhHH
Q psy17856         18 HYEVDLTG-GPDQVYLSD---REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        18 ~~~yaia~-~Ay~~m~~~---~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ||+.+-+| +|++.+..+   ...-.-+|.|..|||||+.+-..+.
T Consensus        81 PFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          81 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             cccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHH
Confidence            44455555 445544432   3333458899999999998766554

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.26  E-value=0.12  Score=33.01  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=16.5

Q ss_pred             CCCceEEecCCCCCccchhh
Q psy17856         35 REDQSILCTGESGAGKTENT   54 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~   54 (79)
                      ++.+.+++.+.+|+|||...
T Consensus         7 ~~~~~~lv~~~TGsGKT~~~   26 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKRY   26 (305)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             hcCCcEEEEECCCCCHHHHH
Confidence            35677899999999999753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.11  E-value=0.1  Score=34.01  Aligned_cols=36  Identities=19%  Similarity=0.420  Sum_probs=25.8

Q ss_pred             CCceEEecCCCCCccchhhhhhH--HhHhhhhcCCCCC
Q psy17856         36 EDQSILCTGESGAGKTENTKKVI--QYLAYVAASKPKG   71 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l--~~l~~~s~~~~~~   71 (79)
                      ..+.+||+|.+.+|||+..|.+.  .+|+..+.--+.+
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~   77 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ   77 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSS
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecC
Confidence            45678999999999999999854  5555554333433

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=87.93  E-value=0.2  Score=32.57  Aligned_cols=37  Identities=16%  Similarity=0.379  Sum_probs=29.8

Q ss_pred             HHHHHhHhc-CCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         26 GPDQVYLSD-REDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        26 ~Ay~~m~~~-~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+.+.++.+ .+-.||+|.|..++|||..+..++++|-
T Consensus        41 ~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            445555554 4568999999999999999999999874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.79  E-value=0.21  Score=33.06  Aligned_cols=38  Identities=13%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             HHHHHhHh--cCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         26 GPDQVYLS--DREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        26 ~Ay~~m~~--~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+...++.  ..+..|++|.|..++|||..+..++..+-.
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            45555553  356788999999999999999998887743

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.72  E-value=0.13  Score=34.70  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             hHhcCCCceEEecCCCCCccchhh
Q psy17856         31 YLSDREDQSILCTGESGAGKTENT   54 (79)
Q Consensus        31 m~~~~~~QsIvisGeSGsGKTe~~   54 (79)
                      .+....|.+|+..|.+|||||.+.
T Consensus        79 ~~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          79 LYENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             HHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HHhcCCCeEEEeeeccccccceee
Confidence            344588999999999999999885

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=87.63  E-value=0.092  Score=34.88  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             ceEEecCCCCCccchhhhhhHHhH
Q psy17856         38 QSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      ..|+|.|..|.|||..+|.+-.-|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            469999999999999999887654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.56  E-value=0.24  Score=33.62  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=26.0

Q ss_pred             hcCCCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         33 SDREDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        33 ~~~~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      ...+.-.|-|+|..|+|||+....+++++..
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            3455667899999999999999999988765

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=0.15  Score=34.12  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             cCCCceEEecCCCCCccchhh
Q psy17856         34 DREDQSILCTGESGAGKTENT   54 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~   54 (79)
                      ...|.+|+..|.+|||||...
T Consensus        73 ~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          73 EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             cCCCcceeeecccCCCCceec
Confidence            578999999999999999886

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.91  E-value=0.4  Score=28.84  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=17.0

Q ss_pred             EEecCCCCCccchhhhhhHHhHh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ++++..+|+|||..+-.++.+..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~   48 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRL   48 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHH
Confidence            56779999999987666655443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.60  E-value=0.13  Score=33.10  Aligned_cols=19  Identities=21%  Similarity=0.401  Sum_probs=15.5

Q ss_pred             eEEecCCCCCccchhhhhh
Q psy17856         39 SILCTGESGAGKTENTKKV   57 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~   57 (79)
                      --+|.|+.|+|||.....+
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            3478899999999987555

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.99  E-value=0.24  Score=33.99  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      +.-.+|+|..|+|||+....++..|...
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~  190 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQM  190 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHH
Confidence            4467999999999999998887777654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.76  E-value=0.21  Score=31.40  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             cchHHHHHhHhcCCCceEEecCCCCCccchhhhhhHHh
Q psy17856         23 LTGGPDQVYLSDREDQSILCTGESGAGKTENTKKVIQY   60 (79)
Q Consensus        23 ia~~Ay~~m~~~~~~QsIvisGeSGsGKTe~~k~~l~~   60 (79)
                      +=..+...++.   ..++++...+|+|||...-..+.+
T Consensus        47 ~Q~~~i~~~l~---g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          47 IQKMWAKRILR---KESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             HHHHHHHHHHT---TCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHC---CCCEEEEecCCChHHHHHHHHHHH
Confidence            33444455553   456899999999999876544433

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=0.2  Score=31.75  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=20.6

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      ....+|.|++|+|||..+-.+.-.++
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45788999999999998877665444

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.83  E-value=0.3  Score=30.98  Aligned_cols=28  Identities=25%  Similarity=0.236  Sum_probs=19.7

Q ss_pred             CCceEEecCCCCCccchhhhhhHHhHhh
Q psy17856         36 EDQSILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        36 ~~QsIvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      .+..++|.|-.|+|||+.+-..+.+++.
T Consensus        13 ~~~~~lI~g~aGTGKTt~l~~rv~~ll~   40 (306)
T d1uaaa1          13 VTGPCLVLAGAGSGKTRVITNKIAHLIR   40 (306)
T ss_dssp             CSSEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCCccHHHHHHHHHHHHHH
Confidence            3445778899999999876554555543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=84.65  E-value=0.15  Score=30.59  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=17.2

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |.|.|.+++|||+..+.+..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67889999999999888753

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=0.23  Score=29.81  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=23.4

Q ss_pred             eEEecCCC-CCccchhhhhhHHhHhhhh
Q psy17856         39 SILCTGES-GAGKTENTKKVIQYLAYVA   65 (79)
Q Consensus        39 sIvisGeS-GsGKTe~~k~~l~~l~~~s   65 (79)
                      .++|+|.. |.|||+.+-.+.+.|+..+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G   30 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAG   30 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            47899995 9999999999999988664

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=84.52  E-value=0.24  Score=34.56  Aligned_cols=29  Identities=28%  Similarity=0.406  Sum_probs=21.3

Q ss_pred             cCCCceEEecCCCCCccchhhhhhHHhHh
Q psy17856         34 DREDQSILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .+....++|.|++|.|||....-+.+-+.
T Consensus        40 r~~k~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCCCCCeEECCCCCCHHHHHHHHHHHHH
Confidence            44445577779999999998876665554

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=84.35  E-value=0.26  Score=33.40  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=18.7

Q ss_pred             cCCCceEEecCCCCCccchhh
Q psy17856         34 DREDQSILCTGESGAGKTENT   54 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~   54 (79)
                      ...|.+|+..|.+|||||.+.
T Consensus        77 ~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          77 NGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             ccCceeEEecccCCCCcceee
Confidence            578999999999999999774

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.10  E-value=0.19  Score=32.49  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             ceEEecCCCCCccchhhhhhH--HhHhhhh
Q psy17856         38 QSILCTGESGAGKTENTKKVI--QYLAYVA   65 (79)
Q Consensus        38 QsIvisGeSGsGKTe~~k~~l--~~l~~~s   65 (79)
                      +.+||+|.+.+|||+..|.+.  .+|+..+
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G   65 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVG   65 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhcc
Confidence            468999999999999999744  5555443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.00  E-value=0.14  Score=30.68  Aligned_cols=20  Identities=20%  Similarity=0.222  Sum_probs=17.4

Q ss_pred             EEecCCCCCccchhhhhhHH
Q psy17856         40 ILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~   59 (79)
                      |.|.|.+++|||+..+.+..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67889999999999988764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=83.96  E-value=0.49  Score=30.80  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=18.8

Q ss_pred             CCCceEEecCCCCCccchhhhhhHH
Q psy17856         35 REDQSILCTGESGAGKTENTKKVIQ   59 (79)
Q Consensus        35 ~~~QsIvisGeSGsGKTe~~k~~l~   59 (79)
                      ......+|.|..|||||+..-..+.
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHH
Confidence            3445668889999999998755543

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=83.92  E-value=0.29  Score=33.04  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             cCCCceEEecCCCCCccchhh
Q psy17856         34 DREDQSILCTGESGAGKTENT   54 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~   54 (79)
                      ...|.+|+..|.+|+|||.+.
T Consensus        84 ~G~n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          84 EGYNVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             hccCceeeeeccCCCCCceee
Confidence            578999999999999999886

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=83.88  E-value=0.2  Score=34.29  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             EEecCCCCCccchhhhhhHHhHhh
Q psy17856         40 ILCTGESGAGKTENTKKVIQYLAY   63 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l~~l~~   63 (79)
                      |+|-|--|+|||+.++.+.++|..
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999999988753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.80  E-value=0.17  Score=33.47  Aligned_cols=19  Identities=21%  Similarity=0.372  Sum_probs=15.8

Q ss_pred             EEecCCCCCccchhhhhhH
Q psy17856         40 ILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        40 IvisGeSGsGKTe~~k~~l   58 (79)
                      -+|.|++|||||.....+.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3788999999999887664

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=83.18  E-value=0.21  Score=34.25  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      -|+|-|--|+|||+.++.+.++|.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            378999999999999999988764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=82.80  E-value=0.36  Score=31.78  Aligned_cols=36  Identities=22%  Similarity=0.142  Sum_probs=26.7

Q ss_pred             HHHHHhHh-cC--CCceEEecCCCCCccchhhhhhHHhH
Q psy17856         26 GPDQVYLS-DR--EDQSILCTGESGAGKTENTKKVIQYL   61 (79)
Q Consensus        26 ~Ay~~m~~-~~--~~QsIvisGeSGsGKTe~~k~~l~~l   61 (79)
                      .++..++. ..  ..+.+.|.|++|+|||..+-.++...
T Consensus        40 ~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          40 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            56666664 43  67888999999999999975555443

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=82.66  E-value=0.24  Score=33.38  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.7

Q ss_pred             cCCCceEEecCCCCCccchhh
Q psy17856         34 DREDQSILCTGESGAGKTENT   54 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~   54 (79)
                      .+.|.+|+..|.+|||||...
T Consensus        78 ~G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          78 MGYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             TTCEEEEEEEECTTSSHHHHH
T ss_pred             ccCCceEEeeeeccccceEEe
Confidence            478999999999999999764

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.27  E-value=0.34  Score=33.13  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             cCCCceEEecCCCCCccchhh
Q psy17856         34 DREDQSILCTGESGAGKTENT   54 (79)
Q Consensus        34 ~~~~QsIvisGeSGsGKTe~~   54 (79)
                      ...|.+|+..|.+|||||...
T Consensus       122 ~G~n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         122 DGYNICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             TTCEEEEEEECSTTSSHHHHH
T ss_pred             cccceeEEeeccCCCccceEe
Confidence            578999999999999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.84  E-value=0.28  Score=31.57  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=17.4

Q ss_pred             eEEecCCCCCccchhhhhhHHhHh
Q psy17856         39 SILCTGESGAGKTENTKKVIQYLA   62 (79)
Q Consensus        39 sIvisGeSGsGKTe~~k~~l~~l~   62 (79)
                      .++|.|-.|+|||+.+-..+.+|.
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            477889999999987654444444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=0.56  Score=29.60  Aligned_cols=28  Identities=29%  Similarity=0.291  Sum_probs=23.2

Q ss_pred             CceEEecCCCCCccchhhhhhHHhHhhh
Q psy17856         37 DQSILCTGESGAGKTENTKKVIQYLAYV   64 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l~~l~~~   64 (79)
                      .--|+++|.-|.|||+.+-.+-..|+..
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~   35 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQ   35 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHC
Confidence            4457899999999999998888877654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.38  E-value=0.23  Score=34.37  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             CceEEecCCCCCccchhhhhhH
Q psy17856         37 DQSILCTGESGAGKTENTKKVI   58 (79)
Q Consensus        37 ~QsIvisGeSGsGKTe~~k~~l   58 (79)
                      .-.|.|.|++|+|||+..+.++
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            4559999999999999988876