Psyllid ID: psy17862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MSDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMGPH
Secondary Structure (PSIPRED)
cccHHHHHHHHccccHHHHHHHcccccHHHHcccccHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MSDDEDSNELTEKMQQLQESIRdgsfnigqvsawdddvvgiedsrnpqdknKRNILEAAEHNDSKTLEALLDHdstlvdavdkdgysplhracyndkNKRKILEAAEHNDSKTLEALLDLDSTLvdavdkdgysplhracYNGHANIVELLIQWgadtqkttidgwtplhsackwnnTECVIVLLNYGvdvnaqtnggltplhlaashshSRDVLMILLshpnvdphilstsNESAREIATRSgihyglfetiepcfnnlsmgph
Flexible Loop (DISEMBL)
MSDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVvgiedsrnpqdknkRNILEAAEHNDSKTLEALLDHDSTLvdavdkdgysplhracyndkNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIepcfnnlsmgph
Low Complexity Region (SEG)
MSDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMGPH
Disordered region (IsUnstruct)
*************************FNIGQVSAWDDDVV***********************************STLVDAVDKDGYSPLHRACYNDK****IL*********TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHIL********EIATRSGIHYGLFETIEPCFNN******
Disordered Region (DISOPRED)
**DDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF*N******
Disordered Region (DISEMBL)
*************MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMGPH
Disordered Region (DISPRO)
MSDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMGPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q5EA33	238	Ankyrin repeat domain-con	yes	N/A	0.592	0.659	0.503	4e-38
Q8WVL7	239	Ankyrin repeat domain-con	yes	N/A	0.603	0.669	0.5	5e-38
Q8VE42	238	Ankyrin repeat domain-con	yes	N/A	0.596	0.663	0.487	9e-38
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.641	0.043	0.331	1e-17
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.754	0.045	0.312	1e-17
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.641	0.042	0.331	2e-17
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.569	0.080	0.337	3e-17
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.762	0.103	0.297	6e-17
Q2IBB2	1663	Cortactin-binding protein	N/A	N/A	0.664	0.105	0.336	2e-16
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.641	0.091	0.320	2e-16

>sp|Q5EA33|ANR49_BOVIN Ankyrin repeat domain-containing protein 49 OS=Bos taurus GN=ANKRD49 PE=2 SV=1

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 104/157 (66%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +L AAE N   T++ LL   +T V+  D+D Y+PLHRA YNGH ++V  LI  GAD    
Sbjct: 77  LLWAAEKNRLTTVQRLLSERATHVNTRDEDKYTPLHRAAYNGHLDVVRELIAHGADVHAV 136

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           T+DGWTPLHSACKWNN      LL +  DVNAQT G LTPLHLAA +  S+D L +LL +
Sbjct: 137 TVDGWTPLHSACKWNNARVASFLLQHDADVNAQTKGLLTPLHLAAGNRDSKDTLELLLMN 196

Query: 222 PNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN 258
             + P + ++  E+A +IA R+GI++ LFE +E C N
Sbjct: 197 RYIKPGLKNSLEETAFDIARRTGIYHYLFEIVEGCTN 233

Bos taurus (taxid: 9913)

>sp|Q8WVL7|ANR49_HUMAN Ankyrin repeat domain-containing protein 49 OS=Homo sapiens GN=ANKRD49 PE=1 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 105/160 (65%)

Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           R +L AAE N   T+  LL   +T V+  D+D Y+PLHRA Y+GH +IV+ LI  GAD  
Sbjct: 76  RLLLWAAEKNRLTTVRRLLSEKATHVNTRDEDEYTPLHRAAYSGHLDIVQELIAQGADVH 135

Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
             T+DGWTPLHSACKWNNT     LL +  D+NAQT G LTPLHLAA +  S+D L +LL
Sbjct: 136 AVTVDGWTPLHSACKWNNTRVASFLLQHDADINAQTKGLLTPLHLAAGNRDSKDTLELLL 195

Query: 220 SHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN 259
            +  V P + +   E+A +IA R+ I++ LFE +E C N+
Sbjct: 196 MNRYVKPGLKNNLEETAFDIARRTSIYHYLFEIVEGCTNS 235

Homo sapiens (taxid: 9606)

>sp|Q8VE42|ANR49_MOUSE Ankyrin repeat domain-containing protein 49 OS=Mus musculus GN=Ankrd49 PE=1 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 104/158 (65%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +L AAE N   T++ LL   +  V+  D+D Y+PLHRA Y+GH ++V  L+  GAD    
Sbjct: 77  LLWAAEKNRLATVQRLLSEKAAEVNTRDEDEYTPLHRAAYSGHIDVVRELVAKGADVHAV 136

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           T+DGWTPLHSACKWNNT+    LL +  D+NAQT G LTPLHLAA +  SRD L +LL +
Sbjct: 137 TVDGWTPLHSACKWNNTKVASFLLQHDADINAQTKGLLTPLHLAAGNRDSRDTLELLLMN 196

Query: 222 PNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN 259
             + P + + S E+A +IA R+ I++ LFE  E C N+
Sbjct: 197 RYIKPELKNNSQETASDIARRTSIYHYLFEIAEGCTNS 234

Mus musculus (taxid: 10090)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 17/187 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA     + +E LL+  + L+ A  K+G SPLH A   D      +E  +H        L
Sbjct: 306 AARSGHDQVVELLLERKAPLL-ARTKNGLSPLHMAAQGDH-----VECVKH--------L 351

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +  VD V  D  + LH A + GH  + +LL+   A+     ++G+TPLH ACK N 
Sbjct: 352 LQYKAP-VDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNR 410

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
            + + +L+ YG  + A T  GLTP+H+AA   H   VL++L +     P + +   E+A 
Sbjct: 411 IKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQN--GASPDVTNIRGETAL 468

Query: 238 EIATRSG 244
            +A R+G
Sbjct: 469 HMAARAG 475

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 27/227 (11%)

Query: 41  IEDSRNPQDKNKRNI--LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN 98
           ++ S +P    K  +  L  A H D++ +  LL        A  K+GY+PLH A    KN
Sbjct: 585 LQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAA--KKN 642

Query: 99  KRKI----LEAAEHNDSKTLEAL-----------LDLDSTL------VDAVDKDGYSPLH 137
           +  I    LE     ++ T + +           +D+ S L      V+  +K G +PLH
Sbjct: 643 QMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLH 702

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
            A      N+ E+L+  GA     T  G+TPLH  C + N + V  LL +   VNA+T  
Sbjct: 703 LAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKN 762

Query: 198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           G TPLH AA   H+  ++ +LL + N  P+ L+ +  +A  IA R G
Sbjct: 763 GYTPLHQAAQQGHTH-IINVLLQN-NASPNELTVNGNTALGIARRLG 807

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 17/187 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA     + +E LL+  + L+ A  K+G SPLH A   D      +E  +H        L
Sbjct: 306 AARSGHDQVVELLLERGAPLL-ARTKNGLSPLHMAAQGDH-----VECVKH--------L 351

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +  VD V  D  + LH A + GH  + +LL+   A+     ++G+TPLH ACK N 
Sbjct: 352 LQHKAP-VDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNR 410

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
            + + +L+ YG  + A T  GLTP+H+AA   H   VL++L +     P + +   E+A 
Sbjct: 411 IKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQN--GASPDVTNIRGETAL 468

Query: 238 EIATRSG 244
            +A R+G
Sbjct: 469 HMAARAG 475

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 15/166 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA     +T+ ALL+ +++    + K G++PLH A             A++   +  E L
Sbjct: 510 AAREGHVETVLALLEKEASQA-CMTKKGFTPLHVA-------------AKYGKVRVAELL 555

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L+ D+   +A  K+G +PLH A ++ + +IV+LL+  G        +G+TPLH A K N 
Sbjct: 556 LERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 614

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
            E    LL YG   NA++  G+TPLHLAA   H+  V ++L    N
Sbjct: 615 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 660

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 23/225 (10%)

Query: 41  IEDSRNPQDKNKRNI--LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN 98
           ++ S +P    K  +  L  A H D++ +  LL        A  K+GY+PLH A   ++ 
Sbjct: 568 LQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQM 627

Query: 99  --KRKILEAAEHNDSKTLEAL-----------LDLDSTL------VDAVDKDGYSPLHRA 139
                +LE     ++ T + +           +D+ S L      V+  +K G +PLH A
Sbjct: 628 DIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNLSNKSGLTPLHLA 687

Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
                 N+ E+L+  GA     T  G+TPLH  C + N + V  LL +   VNA+T  G 
Sbjct: 688 AQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGY 747

Query: 200 TPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           T LH AA   H+  ++ +LL + N  P+ L+ +  +A  IA R G
Sbjct: 748 TALHQAAQQGHTH-IINVLLQN-NASPNELTVNGNTALAIARRLG 790

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q2IBB2|CTTB2_RHIFE Cortactin-binding protein 2 OS=Rhinolophus ferrumequinum GN=CTTNBP2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 17/193 (8%)

Query: 31  VSAWDDDVVGIEDSRNPQDKNKRNIL--EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSP 88
            S W   +  +  S  P     R  L  +AA   +   L  LL+ +   ++   +DG+S 
Sbjct: 688 ASGWSPSLTFLLMSGGPAPLAGRPTLLQQAAAQGNVTLLSMLLNEEGLDINYSCEDGHSA 747

Query: 89  LHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV 148
           L+ A  N            H D   L  LL+ ++  VDA DK+G++PL  A   GH   V
Sbjct: 748 LYSAAKNG-----------HTDCVRL--LLNAEAQ-VDAADKNGFTPLCAAAAQGHFKCV 793

Query: 149 ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
           ELL  + AD   T   G TPL+ ACK  N EC+ +LL  G D + +T+ G TPLH AA  
Sbjct: 794 ELLTAYDADINHTADGGQTPLYLACKNGNKECIKLLLEAGSDRSVKTSDGWTPLH-AAVD 852

Query: 209 SHSRDVLMILLSH 221
           + + D + +L+ H
Sbjct: 853 TGNVDSVKLLMYH 865

Rhinolophus ferrumequinum (taxid: 59479)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 17/187 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA +   +  E LLDH +  + A  K+G SP+H A   D           H D   L  L
Sbjct: 275 AARNGHVRISEILLDHGAP-IQAKTKNGLSPIHMAAQGD-----------HLDCVRL--L 320

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L  ++  +D +  D  +PLH A + GH  + ++L+  GA      ++G+TPLH ACK N+
Sbjct: 321 LQYNAE-IDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNH 379

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
              + +LL  G  ++A T  GLTPLH+A+   H   V  +L       P++ +   E+  
Sbjct: 380 IRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLL--QRGASPNVSNVKVETPL 437

Query: 238 EIATRSG 244
            +A R+G
Sbjct: 438 HMAARAG 444

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
307201174	213	Ankyrin repeat domain-containing protein	0.8	0.995	0.356	4e-41
350403022	214	PREDICTED: ankyrin repeat domain-contain	0.773	0.957	0.374	4e-40
340728203	214	PREDICTED: ankyrin repeat domain-contain	0.773	0.957	0.374	1e-39
48095483	214	PREDICTED: ankyrin repeat domain-contain	0.769	0.953	0.365	2e-38
380011910	214	PREDICTED: ankyrin repeat domain-contain	0.769	0.953	0.361	4e-38
149716421	238	PREDICTED: ankyrin repeat domain-contain	0.596	0.663	0.506	1e-37
332030960	215	Ankyrin repeat domain-containing protein	0.784	0.967	0.362	3e-37
301620811	259	PREDICTED: ankyrin repeat domain-contain	0.603	0.617	0.493	9e-37
383865985	214	PREDICTED: ankyrin repeat domain-contain	0.796	0.985	0.339	2e-36
62460624	238	ankyrin repeat domain-containing protein	0.592	0.659	0.503	2e-36

>gi|307201174|gb|EFN81080.1| Ankyrin repeat domain-containing protein 49 [Harpegnathos saltator]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 144/261 (55%), Gaps = 49/261 (18%)

Query: 1   MSDDEDSNELTEKMQQLQESIRDGSFN-IGQVSAWDDDVVGIEDSRNPQDKNKRNILEAA 59
           MS +E+++ELT  ++ +++ I   S +   QVSAW+DD  G+E  RN ++ + +      
Sbjct: 1   MSSEEENDELT-NLEDIRDKILSQSHSERMQVSAWEDDDDGVEAERNAREPDAK------ 53

Query: 60  EHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLD 119
                                                     +L AAE  D + ++ LL 
Sbjct: 54  -----------------------------------------AVLNAAEEGDLEKIKELLS 72

Query: 120 LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTE 179
            +  L+++ DKDGY+PLHRACY  H  +VE L++ GA     T+D W PLHSAC WNNTE
Sbjct: 73  KNQFLLESTDKDGYTPLHRACYGNHVKVVEYLLEIGARLDAKTLDEWQPLHSACCWNNTE 132

Query: 180 CVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREI 239
           C  +L+  G D+NA++ G  TPLHL ++ SH+   L +LL HP+ +PHI+++S ++A +I
Sbjct: 133 CADILIANGADINAKSKGDQTPLHLVSASSHNSPALQLLLMHPDTNPHIVNSSGDTADKI 192

Query: 240 ATRSGIHYGLFETIEPCFNNL 260
           A R+  +Y ++E IEPC N +
Sbjct: 193 ARRTTKYYPMYEIIEPCLNEI 213

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403022|ref|XP_003486678.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Bombus impatiens]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 141/262 (53%), Gaps = 57/262 (21%)

Query: 2   SDDEDSNELTEKMQQLQESIRDGSFNIG-----QVSAWDDDVVGIEDSRNPQDKNKRNIL 56
           S  E+S++LT+      E+IRD   +       QVSAW+DD  G+E  RN          
Sbjct: 3   SSGEESDQLTD-----LEAIRDRMLSQPRSERMQVSAWEDDDDGVEAERN---------- 47

Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
             A+  D+K                                   +IL AAE+ +   ++ 
Sbjct: 48  --AKEPDAK-----------------------------------EILTAAENGELDKVQK 70

Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
           LL  +  L++  DKDGY+PLHRACY  H  IVE L+Q GA     T+D W PLHSAC WN
Sbjct: 71  LLMENPLLLECTDKDGYTPLHRACYGNHVAIVEYLLQAGAKIDAKTMDEWQPLHSACCWN 130

Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA 236
           N EC +VL+  G D+NA++ G  TPLHL ++ SH+   L +LL HP+++P ++++S ++A
Sbjct: 131 NVECAMVLIANGADINARSKGDQTPLHLVSASSHNSPALQLLLLHPDINPRLVNSSGDTA 190

Query: 237 REIATRSGIHYGLFETIEPCFN 258
            +IA R+G +Y +FE IE C N
Sbjct: 191 EQIAKRTGKYYPMFEIIEDCLN 212

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728203|ref|XP_003402417.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Bombus terrestris]

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 139/262 (53%), Gaps = 57/262 (21%)

Query: 2   SDDEDSNELTEKMQQLQESIRDGSFNIG-----QVSAWDDDVVGIEDSRNPQDKNKRNIL 56
           S  E+S++LT+      E+IRD   +       QVSAW+DD  G+E  RN          
Sbjct: 3   SSGEESDQLTD-----LEAIRDRMLSQPRSERMQVSAWEDDDDGVEAERN---------- 47

Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
             A+  D+K                                   +IL AAE+     ++ 
Sbjct: 48  --AKEPDAK-----------------------------------EILTAAENGKLDKVQK 70

Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
           LL  +  L++  DKDGY+PLHRACY  H  IVE L+Q GA     T+D W PLHSAC WN
Sbjct: 71  LLMENPLLLECTDKDGYTPLHRACYGNHVGIVEYLLQAGAKIDAKTMDEWQPLHSACCWN 130

Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA 236
           N EC +VL+  G D+NA++ G  TPLHL ++ SH+   L +LL HP+ +P ++++S ++A
Sbjct: 131 NVECAMVLIANGADINARSKGDQTPLHLVSASSHNSPTLQLLLLHPDTNPRLVNSSGDTA 190

Query: 237 REIATRSGIHYGLFETIEPCFN 258
            ++A R+G +Y LFE IE C N
Sbjct: 191 EQVAKRTGKYYPLFEIIEDCLN 212

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48095483|ref|XP_392305.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Apis mellifera]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 133/257 (51%), Gaps = 53/257 (20%)

Query: 7   SNELTEKMQQLQESIRDGSFNIG-----QVSAWDDDVVGIEDSRNPQDKNKRNILEAAEH 61
           S E ++++  L E+IRD   N       QVSAW+DD  G+E  RN ++ + +        
Sbjct: 4   SEEESDQLMNL-EAIRDKMLNQPRSERMQVSAWEDDDDGVEAERNAKEPDAK-------- 54

Query: 62  NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
                                                  +IL AAE+ D   ++ LL  +
Sbjct: 55  ---------------------------------------EILAAAENGDLDKIKKLLTKN 75

Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
             L++  DKDGY+PLHRACY  H  IVE L+Q GA     T D W PLHSA  WNN ECV
Sbjct: 76  HRLLECTDKDGYTPLHRACYGNHVEIVEYLLQAGAKIDAKTQDEWQPLHSASCWNNVECV 135

Query: 182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT 241
             L+  G D+NA++ G  TPLHL ++ SH+   L +LL HP+ +P ++++S ++A  IA 
Sbjct: 136 ATLIANGADINAKSKGDQTPLHLVSASSHNSPALQLLLLHPDTNPKLINSSGDTAEHIAR 195

Query: 242 RSGIHYGLFETIEPCFN 258
           R+G +Y +FE IE C N
Sbjct: 196 RTGKYYPMFEIIEDCLN 212

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011910|ref|XP_003690036.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Apis florea]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 133/257 (51%), Gaps = 53/257 (20%)

Query: 7   SNELTEKMQQLQESIRDGSFNIG-----QVSAWDDDVVGIEDSRNPQDKNKRNILEAAEH 61
           S E ++++  L E+IRD   N       QVSAW+DD  G+E  RN ++ + +        
Sbjct: 4   SEEESDQLMNL-EAIRDKMLNQPRGERMQVSAWEDDDDGVEAERNAKEPDAK-------- 54

Query: 62  NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
                                                  +IL AAE+ D   ++ LL  +
Sbjct: 55  ---------------------------------------EILAAAENGDLDKVKKLLTKN 75

Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
             L++  DKDGY+PLHRACY  H  IVE L+Q GA     T D W PLHSA  WNN EC+
Sbjct: 76  HRLLECTDKDGYTPLHRACYGNHVEIVEYLLQAGAKISAKTQDEWQPLHSASCWNNVECI 135

Query: 182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT 241
             L+  G D+NA++ G  TPLHL ++ SH+   L +LL HP+ +P ++++S ++A  IA 
Sbjct: 136 ATLIANGADINAKSKGDQTPLHLVSASSHNSPALQLLLLHPDTNPKLINSSGDTAEHIAR 195

Query: 242 RSGIHYGLFETIEPCFN 258
           R+G +Y +FE IE C N
Sbjct: 196 RTGKYYPMFEIIEDCLN 212

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149716421|ref|XP_001498431.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Equus caballus]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 105/158 (66%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +L AAE N   T++ LL   +  V+  D+D Y+PLHRA Y GH ++V  LI  GAD    
Sbjct: 77  LLWAAEKNRLATVQRLLSEKAAHVNTRDEDEYTPLHRAAYGGHLDVVRELIAQGADVHAV 136

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           T+DGWTPLHSACKWNNT     LL +  D+NAQT G LTPLHLAA +   +D L +LL++
Sbjct: 137 TVDGWTPLHSACKWNNTRVASFLLQHDADINAQTKGLLTPLHLAAGNRDGKDTLELLLTN 196

Query: 222 PNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN 259
             V P + S+S E+A +IA R+GIH+ LFE +E C N+
Sbjct: 197 RYVKPGLKSSSEETALDIARRTGIHHYLFEIVEDCTNS 234

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332030960|gb|EGI70586.1| Ankyrin repeat domain-containing protein 49 [Acromyrmex echinatior]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 139/265 (52%), Gaps = 57/265 (21%)

Query: 1   MSDDEDSNELTEKMQQLQESIRDGSFNIG-----QVSAWDDDVVGIEDSRNPQDKNKRNI 55
           MS DE+++EL     Q  E+IRD   +       QVSAW+DD  G+E  RN         
Sbjct: 3   MSSDEENDEL-----QDLEAIRDKVLSSPHSKRMQVSAWEDDDDGVEAERN--------- 48

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
              A   D+K +                                   L AAE  + + ++
Sbjct: 49  ---AREPDAKAM-----------------------------------LNAAEEGNLENIK 70

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
            LL+ +  L++  DKDGY+PLHRACY  +  +VE L++ GA     T D W PLHSAC W
Sbjct: 71  NLLNKNRHLLNCTDKDGYTPLHRACYGNNVEVVEYLLEAGARIDAKTQDEWQPLHSACCW 130

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNES 235
           NNT+C   L+  G DVNA + G  TPLHL A+ S++   L +LL HP+ +P+++++S ++
Sbjct: 131 NNTKCAEALIANGADVNATSKGDQTPLHLIAASSYNSPALQLLLLHPDTNPYLVNSSGDT 190

Query: 236 AREIATRSGIHYGLFETIEPCFNNL 260
           A +IA R+  +Y +FE IEPC N +
Sbjct: 191 ADQIARRTTKNYPMFEIIEPCLNEI 215

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301620811|ref|XP_002939759.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Xenopus (Silurana) tropicalis]

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 4/164 (2%)

Query: 99  KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
           K  IL AAE+N   T++ +L     LV+AVD D Y+PLHRA YNGH  I   LI  GAD 
Sbjct: 95  KELILFAAENNRLSTVQTVLSNHPNLVNAVDDDHYTPLHRAAYNGHLGIARELIGHGADV 154

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
              T+DGWTPLHSACKWNNT     LL +G D+NAQT G LTPLHLA+ +  SR++L +L
Sbjct: 155 HAITVDGWTPLHSACKWNNTSVASFLLQHGADINAQTKGLLTPLHLASGNRGSREILELL 214

Query: 219 LSHPNVDPHILSTSNESAREIATRSGIHYGLFET----IEPCFN 258
           L +  ++PH+ + + E+A EIA R+ +++ LFE     I+P ++
Sbjct: 215 LMNRYINPHLKNKAGETAFEIAQRTDVYHYLFEICDYWIKPSYD 258

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383865985|ref|XP_003708452.1| PREDICTED: ankyrin repeat domain-containing protein 49-like [Megachile rotundata]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 48/259 (18%)

Query: 1   MSDDEDSNELTEKMQQLQESI-RDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAA 59
           MS  E+ N+    ++ +++ I         QVSAW+DD  GIE  RN ++ + +      
Sbjct: 1   MSSSEEENDQLMDLETIRDKILSQPRSERMQVSAWEDDDDGIEAERNAKEPDAK------ 54

Query: 60  EHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLD 119
                                                    +IL AAE+ +   ++ L+ 
Sbjct: 55  -----------------------------------------EILNAAENGELDKIKKLVT 73

Query: 120 LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTE 179
            +  L+++ DKDGY+ LHRACY  H  +VE L+Q GA     T+D W PLH AC WNN E
Sbjct: 74  QNPCLLNSTDKDGYTALHRACYGNHVEVVEYLLQAGAKIDAKTMDEWQPLHCACCWNNVE 133

Query: 180 CVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREI 239
           C  VL+  G D+NA++ G  TPLHL ++ SH+   L +LL HP+ +PHI+++S ++A +I
Sbjct: 134 CAAVLIANGADINAKSKGDQTPLHLVSASSHNSPALQLLLLHPDTNPHIVNSSGDTAEDI 193

Query: 240 ATRSGIHYGLFETIEPCFN 258
           A R+G +Y +FE I    N
Sbjct: 194 AKRTGKYYPMFEIIRDYLN 212

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62460624|ref|NP_001014965.1| ankyrin repeat domain-containing protein 49 [Bos taurus] gi|75060959|sp|Q5EA33.1|ANR49_BOVIN RecName: Full=Ankyrin repeat domain-containing protein 49 gi|59857837|gb|AAX08753.1| fetal globin inducing factor [Bos taurus] gi|74356511|gb|AAI04575.1| Ankyrin repeat domain 49 [Bos taurus] gi|296480377|tpg|DAA22492.1| TPA: ankyrin repeat domain-containing protein 49 [Bos taurus]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 104/157 (66%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +L AAE N   T++ LL   +T V+  D+D Y+PLHRA YNGH ++V  LI  GAD    
Sbjct: 77  LLWAAEKNRLTTVQRLLSERATHVNTRDEDKYTPLHRAAYNGHLDVVRELIAHGADVHAV 136

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           T+DGWTPLHSACKWNN      LL +  DVNAQT G LTPLHLAA +  S+D L +LL +
Sbjct: 137 TVDGWTPLHSACKWNNARVASFLLQHDADVNAQTKGLLTPLHLAAGNRDSKDTLELLLMN 196

Query: 222 PNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN 258
             + P + ++  E+A +IA R+GI++ LFE +E C N
Sbjct: 197 RYIKPGLKNSLEETAFDIARRTGIYHYLFEIVEGCTN 233

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
RGD|1311759	239	Ankrd49 "ankyrin repeat domain	0.841	0.933	0.399	8.9e-38
UNIPROTKB|Q8WVL7	239	ANKRD49 "Ankyrin repeat domain	0.833	0.924	0.416	1.1e-37
UNIPROTKB|F1STJ8	239	ANKRD49 "Uncharacterized prote	0.841	0.933	0.408	1.9e-37
UNIPROTKB|Q5EA33	238	ANKRD49 "Ankyrin repeat domain	0.781	0.869	0.421	1.9e-37
MGI|MGI:1930842	238	Ankrd49 "ankyrin repeat domain	0.841	0.936	0.391	3e-37
UNIPROTKB|F1NYL1	232	ANKRD49 "Uncharacterized prote	0.615	0.702	0.475	1.7e-36
FB|FBgn0261881	236	l(2)35Be "lethal (2) 35Be" [Dr	0.603	0.677	0.425	7.7e-32
ZFIN|ZDB-GENE-050417-46	218	ankrd49 "ankyrin repeat domain	0.618	0.752	0.424	9.8e-32
UNIPROTKB|F1NJR5	1895	Gga.55799 "Uncharacterized pro	0.641	0.089	0.336	3.4e-18
RGD|1311691	786	Ripk4 "receptor-interacting se	0.833	0.281	0.321	7.3e-18

RGD|1311759 Ankrd49 "ankyrin repeat domain 49" [Rattus norvegicus (taxid:10116)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 91/228 (39%), Positives = 132/228 (57%)

Query:    35 DDDVVGIEDSRNPQDK-NKRNILEAAEH---NDSKTLEALLDHDSTLVDAVDKDGYSPLH 90
             DD+   +E S +  ++ N+  +LE   H     +++L A    D    +  +++ Y    
Sbjct:     8 DDENPDLESSVDFSEQFNQLELLETHGHLIPTGTQSLWAGNSDDDDEQEEKNEEWYQLQE 67

Query:    91 RACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVEL 150
             +    + +K  +L AAE N   T++ LL   +  V+  D+D Y+PLHRA Y+GH ++V  
Sbjct:    68 KKLEKEPSKL-LLWAAEKNRLATVQRLLSEKAAEVNTRDEDEYTPLHRAAYSGHLDVVRE 126

Query:   151 LIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
             L+  GAD    TIDGWTPLHSACKWNNT     LL +  D+NAQT G LTPLHLAA +  
Sbjct:   127 LVAQGADVHAVTIDGWTPLHSACKWNNTRVASFLLQHDADINAQTKGLLTPLHLAAGNRD 186

Query:   211 SRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN 258
             SRD L +LL +  + P + + S E+A +IA R+ I++ LFE  E C N
Sbjct:   187 SRDTLELLLMNRYIKPELKNNSRETASDIARRTSIYHYLFEIAEGCTN 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

UNIPROTKB|Q8WVL7 ANKRD49 "Ankyrin repeat domain-containing protein 49" [Homo sapiens (taxid:9606)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 97/233 (41%), Positives = 132/233 (56%)

Query:    35 DDDVVGIEDSRNPQDK----NKRNILEAAEHNDSKTLEALL----DHDSTLVDAVDKDGY 86
             +DD  GI D  N  D     N+  +LE   H      ++L     D D    D  +++ Y
Sbjct:     7 NDD--GIPDQENSLDFSEHFNQLELLETHGHLIPTGTQSLWVGNSDEDEEQDDK-NEEWY 63

Query:    87 SPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
                 +    D + R +L AAE N   T+  LL   +T V+  D+D Y+PLHRA Y+GH +
Sbjct:    64 RLQEKKMEKDPS-RLLLWAAEKNRLTTVRRLLSEKATHVNTRDEDEYTPLHRAAYSGHLD 122

Query:   147 IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
             IV+ LI  GAD    T+DGWTPLHSACKWNNT     LL +  D+NAQT G LTPLHLAA
Sbjct:   123 IVQELIAQGADVHAVTVDGWTPLHSACKWNNTRVASFLLQHDADINAQTKGLLTPLHLAA 182

Query:   207 SHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN 259
              +  S+D L +LL +  V P + +   E+A +IA R+ I++ LFE +E C N+
Sbjct:   183 GNRDSKDTLELLLMNRYVKPGLKNNLEETAFDIARRTSIYHYLFEIVEGCTNS 235

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|F1STJ8 ANKRD49 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 94/230 (40%), Positives = 129/230 (56%)

Query:    35 DDDVVGIEDSRNPQDK-NKRNILEAAEHNDSKTLEALL----DHDSTLVDAVDKDGYSPL 89
             DD     EDS +  +  N+  +LE   H      ++L     D D    D   ++ Y   
Sbjct:     8 DDGKPDPEDSLDFSEHFNQLELLETHGHLIPTGTQSLWVGNSDEDEEQ-DEKTEEWYQLQ 66

Query:    90 HRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
              +    D +K  +L AAE N   T+  LL   +T V+  D+D Y+PLHRA Y+GH ++V 
Sbjct:    67 EKKMEQDPSKL-LLWAAEKNRLSTVRRLLSEKATHVNTRDEDEYTPLHRAAYSGHLDVVR 125

Query:   150 LLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS 209
              LI  GAD    T+DGWTPLHSACKWNNT     LL +  D+NAQT G LTPLHLAA + 
Sbjct:   126 ELIANGADVHAVTVDGWTPLHSACKWNNTRVASFLLQHDADINAQTKGLLTPLHLAAGNR 185

Query:   210 HSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN 259
              S+D L +LL +  + P + +   E+A +IA R+ IH+ LFE +E C N+
Sbjct:   186 DSKDTLELLLMNRYIKPGLKNNLEETAFDIARRTSIHHYLFEIVEGCTNS 235

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5EA33 ANKRD49 "Ankyrin repeat domain-containing protein 49" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 89/211 (42%), Positives = 123/211 (58%)

Query:    51 NKRNILEAAEH---NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE 107
             N+  +LE   H     +++L      D    D   ++ Y    +    D +K  +L AAE
Sbjct:    24 NQLELLETHGHLIPTGTQSLWIGNSDDDEEQDEKTEEWYQLQEKKMEKDPSKL-LLWAAE 82

Query:   108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWT 167
              N   T++ LL   +T V+  D+D Y+PLHRA YNGH ++V  LI  GAD    T+DGWT
Sbjct:    83 KNRLTTVQRLLSERATHVNTRDEDKYTPLHRAAYNGHLDVVRELIAHGADVHAVTVDGWT 142

Query:   168 PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPH 227
             PLHSACKWNN      LL +  DVNAQT G LTPLHLAA +  S+D L +LL +  + P 
Sbjct:   143 PLHSACKWNNARVASFLLQHDADVNAQTKGLLTPLHLAAGNRDSKDTLELLLMNRYIKPG 202

Query:   228 ILSTSNESAREIATRSGIHYGLFETIEPCFN 258
             + ++  E+A +IA R+GI++ LFE +E C N
Sbjct:   203 LKNSLEETAFDIARRTGIYHYLFEIVEGCTN 233

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

MGI|MGI:1930842 Ankrd49 "ankyrin repeat domain 49" [Mus musculus (taxid:10090)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 90/230 (39%), Positives = 134/230 (58%)

Query:    35 DDDVVGIEDSRNPQDK-NKRNILEAAEHNDSKTLEALL----DHDSTLVDAVDKDGYSPL 89
             DD+   +E+S +  ++ N+  +L+   H      ++L     D D    +  +++ Y   
Sbjct:     7 DDEKPDLENSVDFSEQFNQLELLKTHGHLIPTGTQSLWVGNSDEDEEQEEK-NEEWYQLQ 65

Query:    90 HRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
              +    D +K  +L AAE N   T++ LL   +  V+  D+D Y+PLHRA Y+GH ++V 
Sbjct:    66 EKKMEKDPSKL-LLWAAEKNRLATVQRLLSEKAAEVNTRDEDEYTPLHRAAYSGHIDVVR 124

Query:   150 LLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS 209
              L+  GAD    T+DGWTPLHSACKWNNT+    LL +  D+NAQT G LTPLHLAA + 
Sbjct:   125 ELVAKGADVHAVTVDGWTPLHSACKWNNTKVASFLLQHDADINAQTKGLLTPLHLAAGNR 184

Query:   210 HSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN 259
              SRD L +LL +  + P + + S E+A +IA R+ I++ LFE  E C N+
Sbjct:   185 DSRDTLELLLMNRYIKPELKNNSQETASDIARRTSIYHYLFEIAEGCTNS 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

UNIPROTKB|F1NYL1 ANKRD49 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 78/164 (47%), Positives = 108/164 (65%)

Query:    96 DKNKRKILE-AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
             +KN  K+L  AAE+N   T+  LL      V+A D+D Y+PLHRA Y+GH ++   L+  
Sbjct:    68 EKNPEKLLLWAAENNRLTTVRRLLSEKLAPVNARDEDQYTPLHRASYSGHLDMARELVAQ 127

Query:   155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
             GAD    T+DGWTPLHSACKWNNT+    LL  G D+NAQTNG LTPLH+AA + +SR+ 
Sbjct:   128 GADIHAQTVDGWTPLHSACKWNNTKVAAFLLQQGADINAQTNGLLTPLHIAAGNKNSRET 187

Query:   215 LMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN 258
             L +LL +  +   + +  +E+A +IA R+ I++ LFE +E C N
Sbjct:   188 LELLLMNRYIKADLKNNLDETAFDIARRTDIYHYLFEIVEDCIN 231

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

FB|FBgn0261881 l(2)35Be "lethal (2) 35Be" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 68/160 (42%), Positives = 100/160 (62%)

Query:    99 KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
             +R IL A   N    +  +L LD+  V+A D DGY+PLHRA YN   ++ +LL+Q+ A+ 
Sbjct:    70 ERMILWAVNENRISEVREILKLDADTVNAKDNDGYTPLHRAAYNNFVDMAKLLLQYHANP 129

Query:   159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
                T  GWTPLHSACKWNN +C  +LL +G DVNA+++G  TPLH+ A+ S+ R+   +L
Sbjct:   130 NARTELGWTPLHSACKWNNADCAHLLLQFGADVNAESDGKQTPLHITATVSNCRNTATVL 189

Query:   219 LSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN 258
             L    + P   + S E A  IA R+G+ + +FE+ E  ++
Sbjct:   190 LLDRYIQPRKENNSEELASVIARRTGMSFPIFESGEEAYD 229

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-050417-46 ankrd49 "ankyrin repeat domain 49" [Danio rerio (taxid:7955)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 70/165 (42%), Positives = 103/165 (62%)

Query:    96 DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
             D     +L AAE N   T+E L+ LD TLV+  D DGY+PLHRA Y+GH ++   L++ G
Sbjct:    54 DTPSELMLWAAERNRCATVERLIALDPTLVNCHDSDGYTPLHRAAYSGHHDVASALLKAG 113

Query:   156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL 215
             A+    T D W PLHSAC+W +     +LL +G +VNA T G LTPL LAA ++ +   +
Sbjct:   114 ANLHARTADDWMPLHSACRWGHANVASLLLQWGSEVNAMTAGRLTPLQLAAGNAAAGKTI 173

Query:   216 MILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNL 260
              +LLS   ++  + +++ E+A +IA R+   + LFE +EPC NN+
Sbjct:   174 ELLLSQRTLEAGLKNSAGETAYDIAHRTSELHRLFEIVEPC-NNV 217

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NJR5 Gga.55799 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 236 (88.1 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 63/187 (33%), Positives = 94/187 (50%)

Query:    58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
             AA +   +  E LLDH +  + A  K+G SP+H A   D           H D   L  L
Sbjct:   312 AARNGHVRIAEILLDHGAP-IQAKTKNGLSPIHMAAQGD-----------HLDCVRL--L 357

Query:   118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
             L   S  +D +  D  +PLH A + GH  + +LL++ GA      ++G+TPLH ACK N+
Sbjct:   358 LQY-SAEIDDITLDHLTPLHVAAHCGHHRVAKLLVEKGAKPNSRALNGFTPLHIACKKNH 416

Query:   178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
                + +LL  G  ++A T  GLTPLH+AA   H   ++  LL      P++ +   E+  
Sbjct:   417 IRVMELLLKTGASIDAVTESGLTPLHVAAFMGHL-PIVKTLLQR-GASPNVSNVKVETPL 474

Query:   238 EIATRSG 244
              +A R+G
Sbjct:   475 HMAARAG 481

GO:0007165 "signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

RGD|1311691 Ripk4 "receptor-interacting serine-threonine kinase 4" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 7.3e-18, P = 7.3e-18
 Identities = 80/249 (32%), Positives = 123/249 (49%)

Query:     6 DSNELTEKMQ-QLQESIRDGSFNIGQ--VSAWDDDVVG--IEDSRNPQDKNKRN---ILE 57
             D+N+L + +Q Q  + + D S ++    V A  ++ V   + ++ NP   NK+    +  
Sbjct:   420 DTNKLMKILQPQDVDLVLDSSASLLHLAVEAGQEECVKWLLLNNANPNLTNKKGSTPLHM 479

Query:    58 AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
             A E      +E LL    T V+A D+D ++ LH A             A++ D  +   L
Sbjct:   480 AVERRGRGIVELLLAR-KTSVNAKDEDQWTALHFA-------------AQNGDEASTRLL 525

Query:   118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
             L+ +++ V+ VD +G +P+H AC +G  NIV  L++ G D      D W PLH A  W  
Sbjct:   526 LEKNAS-VNEVDFEGRTPMHVACQHGQENIVRTLLRRGVDVGLQGKDAWLPLHYAA-WQG 583

Query:   178 TECVIVLL--NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNES 235
                ++ LL    GV VNAQT  G TPLHLAA   H R V  IL+   + D +I S   ++
Sbjct:   584 HLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYR-VARILIDLSS-DINICSLQAQT 641

Query:   236 AREIATRSG 244
                +A  +G
Sbjct:   642 PLHVAAETG 650

GO:0002009 "morphogenesis of an epithelium" evidence=IEA;ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WVL7	ANR49_HUMAN	No assigned EC number	0.5	0.6037	0.6694	yes	N/A
Q5EA33	ANR49_BOVIN	No assigned EC number	0.5031	0.5924	0.6596	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-20
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	6e-06
smart00248	30	smart00248, ANK, ankyrin repeats	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	2e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	5e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	6e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	0.002
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  119 bits (300), Expect = 5e-34
 Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 15/141 (10%)

Query: 79  DAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHR 138
           +A D+DG +PLH A               +   + ++ LL+  +  V+A D DG +PLH 
Sbjct: 1   NARDEDGRTPLHLAA-------------SNGHLEVVKLLLENGAD-VNAKDNDGRTPLHL 46

Query: 139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
           A  NGH  IV+LL++ GAD      DG TPLH A +  N + V +LL +G DVNA+   G
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106

Query: 199 LTPLHLAASHSHSRDVLMILL 219
            TPLHLAA + H  +V+ +LL
Sbjct: 107 RTPLHLAAKNGH-LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (263), Expect = 1e-28
 Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL 185
           +A D+DG +PLH A  NGH  +V+LL++ GAD      DG TPLH A K  + E V +LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
             G DVNA+   G TPLHLAA + +  DV+ +LL H   D +       +   +A ++G
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNL-DVVKLLLKH-GADVNARDKDGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 96.3 bits (240), Expect = 3e-25
 Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 16/141 (11%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N +D++ R  L  AA +   + ++ LL++ +  V+A D DG +PLH A  N         
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKN--------- 50

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                  + ++ LL+  +  V+A DKDG +PLH A  NG+ ++V+LL++ GAD      D
Sbjct: 51  ----GHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

Query: 165 GWTPLHSACKWNNTECVIVLL 185
           G TPLH A K  + E V +LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.8 bits (208), Expect = 6e-21
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
           LH A  NG+  +V+LL++ GAD      D  T LH A +  N E V +LL +G DVNA+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV--NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 196 NGGLTPLHLAASHSHSRDVLMILLSH 221
             G T LHLAA + +  +++ +LL H
Sbjct: 59  KDGNTALHLAARNGN-LEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +  AA++ + + ++ LL+  +  V+  D D  + LH A  NG+  IV+LL++ GAD    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD-VNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
             DG T LH A +  N E V +LL +G D+N +
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 62  NDSKTLEALLDHDSTLVDAVDKDGYSPLH---RACYNDKNKRKILEAAEHN---DSKT-L 114
           N    +E LLD+ +  V+  + DG + LH    +   D    K+L   +     ++K  +
Sbjct: 119 NSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLL--IDKGVDINAKNRV 175

Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
             LL      ++  D  G++PLH A YN +   V+ L+  GA+       G TPLH A  
Sbjct: 176 NYLLSYGV-PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Query: 175 WNNTECVIVLLNYGVDVNA 193
            NN E   +LLN G  +  
Sbjct: 235 NNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 30/183 (16%)

Query: 62  NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
            D K +  LL      V+A D +G +PL  A     N   I+E    N +          
Sbjct: 83  TDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN--------- 133

Query: 122 STLVDAVDKDGYSPLHRACYNGHA--NIVELLIQWGAD-TQKTTID-------------- 164
              V+  + DG + LH    +      I++LLI  G D   K  ++              
Sbjct: 134 ---VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDV 190

Query: 165 -GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
            G+TPLH A   NN E V  LL+ G + N     G TPLH+A  +++     ++L + P+
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Query: 224 VDP 226
           +  
Sbjct: 251 IKT 253

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 68.3 bits (166), Expect = 1e-13
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 15/198 (7%)

Query: 36  DDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN 95
           D ++         D +  +  +   + +   L A    +  L   VD+   +        
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRL- 75

Query: 96  DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN-----IVEL 150
                 +  AA   D K ++ LL   +  V+A D DG +PLH A  NG+       + +L
Sbjct: 76  -----PLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 151 LIQWGADTQKTTI---DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
           L++ GAD     +   DG TPLH A    + + V +LL  G D N++ + G+T L  AA 
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAK 189

Query: 208 HSHSRDVLMILLSHPNVD 225
           +     V ++L    ++ 
Sbjct: 190 NGRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 24/191 (12%)

Query: 63  DSKTLEALLDHDSTLVDAVDKD-GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
           +++  + LL + +  ++  D+  G + LH A              E+ D +  E LL   
Sbjct: 146 EAEITKLLLSYGAD-INMKDRHKGNTALHYA-------------TENKDQRLTELLL-SY 190

Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH-SACKWNNTEC 180
              V+  DK   SPLH A  + +  IV +L++ GA T      G TPLH S     + + 
Sbjct: 191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDI 250

Query: 181 VIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREI 239
           + +LL +GVDVNA++   GLT LH +     S   L +LL +   D + L++   +    
Sbjct: 251 LKLLLEHGVDVNAKSYILGLTALHSSI---KSERKLKLLLEY-GADINSLNSYKLTPLSS 306

Query: 240 A--TRSGIHYG 248
           A      I+ G
Sbjct: 307 AVKQYLCINIG 317

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 40/218 (18%)

Query: 49  DKNKRNILEAA--------EHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKR 100
           D++   I+EAA         +   + +  LL   +  V+   + G +PLH          
Sbjct: 4   DESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLH---------- 52

Query: 101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN---IVELLIQWGAD 157
             L  +       +  LL+  +  V+A ++ G++PLH   Y  +A    +++LLI+ GAD
Sbjct: 53  LYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPLH--LYLYNATTLDVIKLLIKAGAD 109

Query: 158 TQKTTIDGWTPLHSAC--KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL 215
                  G TPLH        N + + +LL  G DVNA    G+TPL             
Sbjct: 110 VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA------------ 157

Query: 216 MILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETI 253
            +LL   N +  +L    ++  ++         L    
Sbjct: 158 -VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHH 194

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A +  DS+ ++ L+ H   + D    D  S LH             +A E  D K +E L
Sbjct: 42  AMKFRDSEAIKLLMKHG-AIPDVKYPDIESELH-------------DAVEEGDVKAVEEL 87

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           LDL     D   KDG +PLH A      +I++LLI  GAD      D ++PLH A    +
Sbjct: 88  LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGD 147

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
            + + +L+++   ++ +   G TPL +A +        M+L S  N+D
Sbjct: 148 IKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 55/239 (23%), Positives = 88/239 (36%), Gaps = 54/239 (22%)

Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRAC-----------YNDKNK------ 99
           +A E  +   +++LL      V+  D    +PLH  C               NK      
Sbjct: 43  QAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYT 101

Query: 100 -RKILEAAEHNDSKTLEALL--------DLDSTLVDAVDKD------------------- 131
              I +A  + + +  + +L         +D   +D   KD                   
Sbjct: 102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADIN 161

Query: 132 ------GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL 185
                 G + LH A  N    + ELL+ +GA+         +PLH A K  N   V +LL
Sbjct: 162 MKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL 221

Query: 186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILST-SNESAREIATRS 243
             G   +A+   G TPLH++  +    D+L +LL H  VD +  S     +A   + +S
Sbjct: 222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAKSYILGLTALHSSIKS 279

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 21/180 (11%)

Query: 46  NPQDKNKRN--ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL 103
           N +D++K N  +  A E+ D +  E LL + +  V+  DK   SPLH             
Sbjct: 161 NMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLH------------- 206

Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC-YNGHANIVELLIQWGADTQ-KT 161
            A +H +   +  LL+  ++  DA DK G +PLH +  Y    +I++LL++ G D   K+
Sbjct: 207 HAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            I G T LHS+ K  +   + +LL YG D+N+  +  LTPL  A       ++  IL+S+
Sbjct: 266 YILGLTALHSSIK--SERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
           G T LH A      E V  LL  GVD+N     G T LH+AA + +   + ++L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 40/262 (15%)

Query: 8   NELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIED--SRNPQDKNKRNILEAAEHNDSK 65
           NE  E M+ ++E I+     I ++       V  +D     P       I  AAE  ++K
Sbjct: 140 NESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITP-------IHYAAERGNAK 192

Query: 66  TLEALLDHDSTLVDAVDKDGYSPLHRACYN----------------DKNKRKILEAAEHN 109
            +  LL + +  V+ +  D  S L  A  +                +KN   +L+A  + 
Sbjct: 193 MVNLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNE 251

Query: 110 DSKTLEALLDLDSTL-VDAVDKDGYSPLHRACYNGH-ANIVELLIQWGADTQKTTIDGWT 167
           D +T  +LL  D+   V+++D    +PLH A      + +V  L++ GAD     I G T
Sbjct: 252 DLET--SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGET 309

Query: 168 PLHSACKWN-NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP 226
           PL+   K   +TE +  L+  G DVNA     +TPLH A++   ++D+++ LL       
Sbjct: 310 PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLE------ 363

Query: 227 HILSTSNESAREIATRSGIHYG 248
                +N +AR+   ++ IHY 
Sbjct: 364 ---LGANVNARDYCDKTPIHYA 382

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
           LL+     ++A D +G +PLH A   G   +V+ L++ G D      DG T L 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 33/210 (15%)

Query: 46  NPQDKNKRNILEAAEHNDS---KTLEALLDHDSTLVDAVDKDGYSPLH------------ 90
           N +DK  R  L       +   K +  LL   +  V+A+D  G +PL             
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVEL 169

Query: 91  ---------RACYNDKNKRKILEA-AE--HNDSKTLEALLDLDSTLVDAVDKDGYSPLHR 138
                         D   R +L    +     ++ +  L+        A D  G +PLH 
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHS 228

Query: 139 A---CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
                    + ++ LLI  G         G TPLH A  +NN      L+  G D+NA +
Sbjct: 229 MATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVS 287

Query: 196 NGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
           + G TPL L   +++ R V   L  +P+ +
Sbjct: 288 SDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
           +A E  D K +E LLD      D   KDG +PLH A    K     L  A   D      
Sbjct: 74  DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP----- 128

Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
             D+ +T       D +SPLH A   G    +ELLI   A        G TPL  A    
Sbjct: 129 --DIPNT-------DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG 179

Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILST 231
           +     +LL+ G +++     G       A  ++  D++ + +     D +I+  
Sbjct: 180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMFM 233

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 8e-09
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL 185
           G + LH+A  +G   +V+ L++ G D  +T  DG T LH A +  N E + +LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
           + + K  +  A +  D ++++ L +  +  V+  D +G  P+H A  +   +I++LL++ 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GA       +G +PLH+A ++ +  C+ +L+++G  +  +   G TPLH A  H+ S   
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE 239

Query: 215 LMI 217
           L+I
Sbjct: 240 LLI 242

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 19/198 (9%)

Query: 46  NPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N +D   +  L  A +  D ++++ L ++ +  V+  D +G  P+H A            
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIA------------ 164

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
             +HN    ++ LL+      +  D +G SPLH A   G    ++LLI  G        +
Sbjct: 165 -IKHNFFDIIKLLLE-KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN 222

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNV 224
           G+TPLH+A   N +   I LL     +N Q   G TPLH A +     D++ ILL H   
Sbjct: 223 GFTPLHNAIIHNRS--AIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYH-KA 279

Query: 225 DPHILSTSNESAREIATR 242
           D  I     E+  + A +
Sbjct: 280 DISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW-----NNT 178
           L D   K    PL+ A    + ++V++L+  GAD   +T +  TPLH          +  
Sbjct: 27  LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK 86

Query: 179 ECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI-LLSHPNVDPHILSTSNESAR 237
           E V +LL YG +VNA  N G+TPL  A S   S    ++  L     + +I ++  E+  
Sbjct: 87  EIVKLLLEYGANVNAPDNNGITPLLYAIS-KKSNSYSIVEYLLDNGANVNIKNSDGENLL 145

Query: 238 EIATRSG 244
            +   S 
Sbjct: 146 HLYLESN 152

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
           +G A    +L+  GAD      DG TPLH AC   + + V VLL +G D       G TP
Sbjct: 92  SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151

Query: 202 LHLAASHSHSRDVLMILLSHPNVD 225
           L LA   +  R+V+ +L  H    
Sbjct: 152 LELAE-ENGFREVVQLLSRHSQCH 174

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
           DG TPLH A +  + E V +LL  G DVNA+  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL 185
           +  D DG +PLH AC NGH  +V +L+++GAD      DG TPL  A +    E V +L 
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Query: 186 NYGV-DVNAQTNG 197
            +         N 
Sbjct: 169 RHSQCHFELGANA 181

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
            D   T  +G TPLH A K+   E V  LL  GVD+N + + GLT L LA
Sbjct: 7   IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 22/181 (12%)

Query: 49  DKNKRNI-------LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRK 101
           D N +NI       L A    D++ +  L+   +  V+A D+   +PLH+A   D+NK  
Sbjct: 299 DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDI 357

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           ++             LL+L +  V+A D    +P+H A    +  I+  L+ +GAD +  
Sbjct: 358 VI------------TLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404

Query: 162 TIDGWTPLHSA-CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
           +    T LH A C  N    V  L++ G +VN++     TPLH A   +   DV+ +LL 
Sbjct: 405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464

Query: 221 H 221
           +
Sbjct: 465 N 465

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 27/194 (13%)

Query: 36  DDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTL-VDAVDKDGYSPLHRACY 94
           D +  I D+R+  +KN  ++L+A  + D +T  +LL +D+   V+++D    +PLH A  
Sbjct: 225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLET--SLLLYDAGFSVNSIDDCKNTPLHHASQ 282

Query: 95  N---------------DKNKRKI-------LEAAEHNDSKTLEALLDLDSTLVDAVDKDG 132
                           D N + I       L A    D++ +  L+ L +  V+A D+  
Sbjct: 283 APSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLY 341

Query: 133 YSPLHRA-CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
            +PLH+A   + + +IV  L++ GA+         TP+H A   NN   +  LL+YG D+
Sbjct: 342 ITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401

Query: 192 NAQTNGGLTPLHLA 205
            A +    T LH A
Sbjct: 402 EALSQKIGTALHFA 415

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
           + +AA     + ++ LL+     ++  D+DG + LH A  NG+  +++LL+
Sbjct: 5   LHKAAISGRLELVKYLLEKGV-DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 49/100 (49%)

Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
           V+  D +  + LH A   G    +++L ++GAD      +G  P+H A K N  + + +L
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNV 224
           L  G   N + N G +PLH AA +     + +++    ++
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/180 (18%), Positives = 57/180 (31%), Gaps = 28/180 (15%)

Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
           +    L+  C +   +  +  AA  N++  L  LL   S         G + LH      
Sbjct: 38  EEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV----GDTLLHAISLEY 93

Query: 144 HANIVELLIQWGADTQKTTIDGW--------------TPLHSACKWNNTECVIVLLNYGV 189
             + VE ++       + +                  T LH A    N E V +LL  G 
Sbjct: 94  V-DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA 152

Query: 190 DVNAQTNGGL---TPLHLAASHSHSRDVLMILLSHPNV------DPHILSTSNESAREIA 240
            V A+  G     +    +  H  S       L  P++      DP  + T++     + 
Sbjct: 153 SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLL 212

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGAD 157
           DG +PLH A  NGH  +V+LL++ GAD
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLH---SACKWNNTECVIVLLNYGVDVNAQTNG 197
           Y    +IV++LI+ GAD  K   DG TPL+   S    NN E ++ ++  G D       
Sbjct: 85  YKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD 144

Query: 198 GLTPLHLAASHSHSRDVLMI-LLSHPNVDPHILS 230
           G T L +    +H  D+ +I LL    VD +  +
Sbjct: 145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN 178

Length = 489

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
           DG TPLH A +  N E V +LL+ G D+NA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
           DG TPLH A +  N E V +LL +G D+NA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 184 LLNYG-VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIA 240
           LL +G +D+NA    G TPLHLAA +     V  +L   P VD ++  +   +A ++A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL--KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 118 LDLDSTLVDAVDKDG-YSPLHRAC--YNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
           LD+   ++ A++  G Y  LH  C         VE L+  G    +T  DG  PLH A K
Sbjct: 22  LDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASK 81

Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
            NN   V +LL +G D NA      TPL+
Sbjct: 82  INNNRIVAMLLTHGADPNACDKQHKTPLY 110

Length = 446

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGAD 157
           DG +PLH A  NG+  +V+LL++ GAD
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 141 YNGHANIVELLIQWGADTQKTTIDG-WTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
            +       LLI++GAD  +   +   TPL+ +      +C+ +LL+YG D+N QTN  +
Sbjct: 80  CDNDDAAK-LLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMV 138

Query: 200 TPLHLA 205
           TP+ LA
Sbjct: 139 TPIELA 144

Length = 300

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVE---LLIQWGADTQ-KTTIDGWTPLHS 171
           A+ D +  LV   ++ G   +H       A+  E   LL++WGAD   K  + G TPLH 
Sbjct: 39  AISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHI 98

Query: 172 ACKWNNTECVIVLLNY-GVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
           A    N E    L N  GV++        TP ++A     ++  +M +L
Sbjct: 99  AVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK--MMNIL 145

Length = 154

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH-PN 223
           G T LH A ++N    V +LL  G DVN ++N G T + +A + S + ++L +LL H P 
Sbjct: 452 GETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPT 511

Query: 224 VDPHILSTSNES 235
           +D  I S    S
Sbjct: 512 LDCVIDSLREIS 523

Length = 661

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
           G+A ++E L++   D       G TPLH A      +CV+VLL +  +V+ +   G T L
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Query: 203 HLAASHSHSRDVLMILLSHPNV-DPHI 228
             A S  H + +  IL    ++ DPH 
Sbjct: 596 WNAISAKHHK-IFRILYHFASISDPHA 621

Length = 823

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 25/187 (13%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEA---LLDHDSTLVDAVDKDGYSPLHRACYNDKNK--R 100
           N  DK  +  L      D + +E    L+ + + + ++VD++G  PL  AC +   +  +
Sbjct: 99  NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFK 157

Query: 101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY--NGHANIVELLIQWGADT 158
           KI+       S   EA +         VDK G + +HR     N  A+ +  +++ G   
Sbjct: 158 KIM-------SIGFEARI---------VDKFGKNHIHRHLMSDNPKASTISWMMKLGISP 201

Query: 159 QKTTIDGWTPLHSAC-KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
            K   DG TPLH  C K      +I LL    DVN Q   G +PL L         ++  
Sbjct: 202 SKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINK 261

Query: 218 LLSHPNV 224
           LLS  NV
Sbjct: 262 LLSTSNV 268

Length = 446

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 161 TTIDGWTPLHSAC----KWNNTECVIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVL 215
           T   G   +H A          E +  L+  G D+NAQ    G T LHLAA H    D+ 
Sbjct: 56  TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAA-HRRDHDLA 114

Query: 216 MILLSHPNVDPHILSTSNESAREIA 240
             L   P +D H  +  N+S  E+A
Sbjct: 115 EWLCCQPGIDLHFCNADNKSPFELA 139

Length = 169

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
            AA+ ND   ++ LL      VD+ D  G + L  A    H ++V LLI  GAD  K   
Sbjct: 628 TAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANT 686

Query: 164 D 164
           D
Sbjct: 687 D 687

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 25/147 (17%)

Query: 96  DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
           D+    +++A    D+K +E  +   +  ++ ++     PL  A   G  +I++LLI  G
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKLLIDNG 91

Query: 156 ADTQ------------KTTIDGW-----------TPLHSACKWNNTECVIVLLNYGVDVN 192
            DT             KT +D             T LH A K  + E + +L  YG DVN
Sbjct: 92  VDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN 151

Query: 193 AQTNGGLTPLHLAASHSHSRDVLMILL 219
            + + G  P+H+A  H+   D++ +LL
Sbjct: 152 IEDDNGCYPIHIAIKHN-FFDIIKLLL 177

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
           DG SP+  A     +  ++LL++ GA       D  + LH A +  + + V  LL+ G  
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 191 VN-AQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
            +      G+TPLHL A+     D++ +L++    DP I +T   S   +A   G
Sbjct: 94  ADDVFYKDGMTPLHL-ATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMG 146

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 94  YNDKNK-----RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV 148
           Y+  N+     + I E  + ++    E LL+     V+A D    +P+H A   G+A +V
Sbjct: 136 YDKINESIEYMKLIKERIQQDELLIAEMLLE-GGADVNAKDIYCITPIHYAAERGNAKMV 194

Query: 149 ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN 192
            LL+ +GAD     +D  + L  A    N + +  +++   ++N
Sbjct: 195 NLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN 238

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 131 DGYSPLHRACYNGHANIVELLIQ 153
           DG +PLH A  NG+  +V+LL+ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLD 23

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 144 HANIVELLIQWGADTQ----KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN-GG 198
           + +I++ +++ GAD +     +      PL  A   +N +   +L+ YG DVN       
Sbjct: 45  YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK 104

Query: 199 LTPLHLAASHSHSRDVLMILLSHPNVD 225
           +TPL+++  H   + + ++L    +++
Sbjct: 105 ITPLYISVLHGCLKCLEILLSYGADIN 131

Length = 300

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 41 IEDSRNPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN 95
          +E   +    +    L  AA + + + ++ LL+H +  V+A DKDG + LH A  N
Sbjct: 17 LEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD-VNAKDKDGNTALHLAARN 71

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG4412|consensus	226		100.0
KOG4412|consensus	226		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0510|consensus	929		99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510|consensus	929		99.97
KOG0508|consensus	615		99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG4177|consensus	1143		99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0502|consensus	296		99.94
KOG0512|consensus	228		99.94
KOG0508|consensus	615		99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.92
KOG0514|consensus	452		99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
KOG4177|consensus	1143		99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
KOG0502|consensus	296		99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0514|consensus	452		99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0505|consensus	527		99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0512|consensus	228		99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0507|consensus	854		99.85
KOG3676|consensus	782		99.85
KOG0195|consensus	448		99.83
KOG0507|consensus	854		99.82
KOG0195|consensus	448		99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG0505|consensus	527		99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG4214|consensus	117		99.68
KOG4369|consensus	2131		99.67
KOG4369|consensus	2131		99.65
KOG3676|consensus	782		99.65
KOG4214|consensus	117		99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
KOG1710|consensus	396		99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
KOG0515|consensus	752		99.44
KOG1710|consensus	396		99.44
KOG0515|consensus	752		99.37
KOG0783|consensus	1267		99.07
KOG0783|consensus	1267		99.06
KOG0818|consensus	669		98.91
KOG0506|consensus	622		98.89
KOG0782|consensus	1004		98.81
KOG0818|consensus	669		98.8
KOG0506|consensus	622		98.79
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.77
PF13606	30	Ank_3: Ankyrin repeat	98.77
KOG0782|consensus	1004		98.74
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
KOG0522|consensus	560		98.59
KOG3609|consensus	822		98.53
KOG0705|consensus	749		98.52
KOG0522|consensus	560		98.51
KOG0705|consensus	749		98.49
KOG0521|consensus	785		98.32
KOG0511|consensus	516		98.29
KOG0521|consensus	785		98.27
KOG3609|consensus	822		98.23
KOG2384|consensus	223		98.21
KOG0520|consensus	975		98.01
KOG0511|consensus	516		97.96
KOG2384|consensus	223		97.93
KOG0520|consensus	975		97.85
KOG2505|consensus	591		97.15
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.95
KOG2505|consensus	591		96.91
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.9
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.26
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.53
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.08
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.9
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.22
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.16

>KOG4412|consensus

Probab=100.00  E-value=1.7e-37  Score=221.44  Aligned_cols=178  Identities=28%  Similarity=0.391  Sum_probs=166.8

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      .+++|||||+..|+.+++++|++..+..+|.+|..|+||||+|             +..|+.++|+.|+...+.+++..+
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia-------------~s~g~~evVk~Ll~r~~advna~t  103 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIA-------------ASNGNDEVVKELLNRSGADVNATT  103 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhh-------------hhcCcHHHHHHHhcCCCCCcceec
Confidence            5789999999999999999999887888999999999999999             678999999999998799999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      ..|.|+||+|+..|..+++++|++.|+.++.+|..|.||||-|+..|..+++++|+..|+.+|.+|+.|+||||.|.--|
T Consensus       104 n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  104 NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEG  183 (226)
T ss_pred             CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997777


Q ss_pred             ChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhc
Q psy17862        210 HSRDVLMILLSHPNVDPHILSTSNESAREIATRS  243 (265)
Q Consensus       210 ~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~  243 (265)
                      +. ++-.+|.++ |+++...|++| ||+.+|+-.
T Consensus       184 ~~-d~a~lLV~~-gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  184 HP-DVAVLLVRA-GADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             Cc-hHHHHHHHh-ccceeeccccC-chHHHHHHH
Confidence            76 677778777 79999999999 999888543

>KOG4412|consensus

Probab=100.00  E-value=8.4e-37  Score=217.93  Aligned_cols=191  Identities=27%  Similarity=0.298  Sum_probs=175.3

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCC-CCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDK-DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      .++.+.++.......|+.++++.+-.++.++. +|+||||||             |+.|+.+++.+|+.+.++.++.+|.
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa-------------~S~g~~eiv~fLlsq~nv~~ddkDd   70 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWA-------------CSFGHVEIVYFLLSQPNVKPDDKDD   70 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeee-------------eecCchhHHHHHHhcCCCCCCCccc
Confidence            34566777777888899999987767787776 999999999             6789999999999888999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQW-GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      .|+||||+|+..|+.++++.|+.+ |+++|..++.|.|+||+|+..++.+++.+|+++|+.++.+|+.|.||||.|+..|
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavG  150 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVG  150 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhcc
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        210 HSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       210 ~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      .. .++++|+.. ++-+|..|+.|.||||.|...|+.+..+.|++...
T Consensus       151 kl-kvie~Li~~-~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA  196 (226)
T KOG4412|consen  151 KL-KVIEYLISQ-GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA  196 (226)
T ss_pred             ch-hhHHHHHhc-CCCCCcccccCccHHHHHHhccCchHHHHHHHhcc
Confidence            99 799999987 79999999999999999988888888887777653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=242.40  Aligned_cols=222  Identities=23%  Similarity=0.308  Sum_probs=169.3

Q ss_pred             HHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHc
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN   95 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~   95 (265)
                      .+..++..|+++.......    .+........+.+.|||+.|+..|+.++|++|++. |++++..+..|.||||+|+..
T Consensus         4 ~l~~ai~~gd~~~v~~ll~----~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIK----NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKI   78 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHH----cCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHc
Confidence            5677777877643211110    01111122345678999999999999999999987 889999999999999999866


Q ss_pred             Cc-------------------------------------------CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCC
Q psy17862         96 DK-------------------------------------------NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDG  132 (265)
Q Consensus        96 ~~-------------------------------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  132 (265)
                      ++                                           +..++|.|+..|+.+++++|+. .|.+++.++..|
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g  157 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNG  157 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCC
Confidence            43                                           2468999999999999999998 578888899999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC-----------------
Q psy17862        133 YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-----------------  195 (265)
Q Consensus       133 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-----------------  195 (265)
                      .||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.++                 
T Consensus       158 ~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~  237 (434)
T PHA02874        158 CYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA  237 (434)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHH
Confidence            999999999999999999999999999999999999999999999999999999887655544                 


Q ss_pred             --------------CCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        196 --------------NGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       196 --------------~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                                    ..|+||||+|+..+...+++++|+.+ |++++.+|..|.|||++|++.+
T Consensus       238 i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~-gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        238 IELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYH-KADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHhC
Confidence                          44555555555554333566666665 5666666666666666666655

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=225.93  Aligned_cols=189  Identities=19%  Similarity=0.181  Sum_probs=160.7

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      .+..+.||||+|+..|+.++++.|+.. +++++..+  |.||||+|             +..|+.++++.|+. .|.+++
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d--~~TpLh~A-------------a~~g~~eiV~lLL~-~Gadvn   88 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQA-------------ATLEDTKIVKILLF-SGMDDS   88 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC--CCCHHHHH-------------HHCCCHHHHHHHHH-CCCCCC
Confidence            345688999999999999999999988 77777764  68999999             66888999999988 578888


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-hHHHHHHhcCCHHHHHHHHhcCCCccccC-CCCCcHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW-TPLHSACKWNNTECVIVLLNYGVDVNAQT-NGGLTPLHL  204 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~  204 (265)
                      ..|..|.||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..++.+++++|++++.+.  .+ ..|.||||+
T Consensus        89 ~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~  166 (284)
T PHA02791         89 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHI  166 (284)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHH
Confidence            8888999999999999999999999999999888887774 8999999999999999999886543  23 247899999


Q ss_pred             HHhCCChHHHHHHHhhCCCCCCcccCCCCccH-HHHHhhcCCchhhhhcchhh
Q psy17862        205 AASHSHSRDVLMILLSHPNVDPHILSTSNESA-REIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       205 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~ll~~~  256 (265)
                      |+..|+. +++++|+++ |++++.+|..|.|| ||+|+..|+.+.++.||+.-
T Consensus       167 Aa~~g~~-eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G  217 (284)
T PHA02791        167 TIKNGHV-DMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD  217 (284)
T ss_pred             HHHcCCH-HHHHHHHHC-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence            9999987 788888887 88999998888877 99999999888888888763

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=240.71  Aligned_cols=220  Identities=25%  Similarity=0.263  Sum_probs=161.7

Q ss_pred             HHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHc
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN   95 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~   95 (265)
                      .|..|++.|+++......     ....+.......+.||||+|+..|+.+++++|++. |++++..+..+.||||+|   
T Consensus         5 ~L~~A~~~g~~~iv~~Ll-----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~~A---   75 (413)
T PHA02875          5 ALCDAILFGELDIARRLL-----DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELHDA---   75 (413)
T ss_pred             HHHHHHHhCCHHHHHHHH-----HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHHHH---
Confidence            356677777654422221     11111222233567888888888888888888877 667777777788888888   


Q ss_pred             CcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc
Q psy17862         96 DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW  175 (265)
Q Consensus        96 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  175 (265)
                                +..|+.+.++.|+..+....+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        76 ----------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~  145 (413)
T PHA02875         76 ----------VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM  145 (413)
T ss_pred             ----------HHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence                      6678888888888754444444566788888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCC-ccHHHHHhhcCCchhhhhcch
Q psy17862        176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSN-ESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       176 ~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      ++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|++. |++++..+..| .||+++|+..|+.+.+..|++
T Consensus       146 ~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~-eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        146 GDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI-AICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            888888888888888888888888888888888876 677777776 78888877766 477777888887777777776


Q ss_pred             hh
Q psy17862        255 PC  256 (265)
Q Consensus       255 ~~  256 (265)
                      ..
T Consensus       224 ~g  225 (413)
T PHA02875        224 RG  225 (413)
T ss_pred             CC
Confidence            53

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-33  Score=242.06  Aligned_cols=187  Identities=27%  Similarity=0.378  Sum_probs=131.9

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcC------------------chHHHHHHhhCCH
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN------------------KRKILEAAEHNDS  111 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~------------------~~~l~~a~~~~~~  111 (265)
                      .+.+|||+|+..|+.++|++|++. |++++.+|..|.||||+||..++.                  ..+++.|+..++.
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            467899999999999999999998 899999999999999999976542                  2244455555544


Q ss_pred             HHHHH---------------------------------HHhcCCCCcccCCCC-CChHHHHHHHcCCHHHHHHHHHcCCC
Q psy17862        112 KTLEA---------------------------------LLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQWGAD  157 (265)
Q Consensus       112 ~~~~~---------------------------------ll~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~  157 (265)
                      ++++.                                 |+. .|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~-~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLS-YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHH-cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence            43333                                 333 35555666666 77777777777777777777777777


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC-CChHHHHHHHhhCCCCCCcccCC-CCcc
Q psy17862        158 TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH-SHSRDVLMILLSHPNVDPHILST-SNES  235 (265)
Q Consensus       158 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~-~~~~~~~~~L~~~~~~~~~~~~~-~g~t  235 (265)
                      ++..+..|.||||.|+..++.+++++|++.|++++.+|..|.||||+|+.. ++. +++++|+++ |++++..+. .|.|
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~-~iv~~Ll~~-gadvn~~~~~~g~T  271 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDY-DILKLLLEH-GVDVNAKSYILGLT  271 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCH-HHHHHHHHc-CCCCCccCCCCCCC
Confidence            777777777777777777777777777777777777777777777777754 333 566666655 566655554 4566


Q ss_pred             HHHHH
Q psy17862        236 AREIA  240 (265)
Q Consensus       236 ~l~~a  240 (265)
                      |||+|
T Consensus       272 pLh~A  276 (477)
T PHA02878        272 ALHSS  276 (477)
T ss_pred             HHHHH
Confidence            66665

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-33  Score=243.00  Aligned_cols=234  Identities=24%  Similarity=0.347  Sum_probs=198.5

Q ss_pred             HHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHH-----HHhcCChHHHHHhhccCCCccccCCCCCCcH
Q psy17862         14 MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILE-----AAEHNDSKTLEALLDHDSTLVDAVDKDGYSP   88 (265)
Q Consensus        14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tp   88 (265)
                      ...|-.|++.+..++....     +..+.+.......+.+||+.     |+..|+.++++.|++. |++++..|..|.||
T Consensus        36 ~t~L~~A~~~~~~~ivk~L-----l~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~d~~g~tp  109 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKIL-----LDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAPDNNGITP  109 (480)
T ss_pred             chhhhhhhccCCHHHHHHH-----HHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCCCCCCCch
Confidence            4555666666664322211     11222222333456799999     9999999999999998 88899999999999


Q ss_pred             HHHHH--HcCc--------------------CchHHHHHHhhC--CHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCC
Q psy17862         89 LHRAC--YNDK--------------------NKRKILEAAEHN--DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH  144 (265)
Q Consensus        89 l~~A~--~~~~--------------------~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  144 (265)
                      ||+|+  ..++                    +..++|.|+..+  +.+++++|++ .|++++..+..|.||||+|+..|+
T Consensus       110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~  188 (480)
T PHA03100        110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYGYTPLHIAVEKGN  188 (480)
T ss_pred             hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCC
Confidence            99999  5543                    357999999999  9999999998 578889999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCC------ChHHHHHHhcCC--HHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHH
Q psy17862        145 ANIVELLIQWGADTQKTTIDG------WTPLHSACKWNN--TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLM  216 (265)
Q Consensus       145 ~~~~~~Ll~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~  216 (265)
                      .+++++|+++|++++..+..|      .||+|.|+..+.  .+++++|++.|++++.+|..|.||||+|+..|+. ++++
T Consensus       189 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~-~iv~  267 (480)
T PHA03100        189 IDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP-EFVK  267 (480)
T ss_pred             HHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHH
Confidence            999999999999999988888      899999999999  9999999999999999999999999999999997 7889


Q ss_pred             HHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        217 ILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       217 ~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      +|++. |++++.+|..|.||+++|+..++.+.+..+++..
T Consensus       268 ~Ll~~-gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g  306 (480)
T PHA03100        268 YLLDL-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG  306 (480)
T ss_pred             HHHHc-CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence            99887 8899999999999999999999888888887653

>KOG0509|consensus

Probab=100.00  E-value=5.6e-33  Score=232.97  Aligned_cols=189  Identities=28%  Similarity=0.389  Sum_probs=138.2

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      ....-++.|+++|+++.|+.+++..+.+++..|.+|.|+||||             +.+++.+++++|++ .|.++|..+
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWA-------------AiNNrl~v~r~li~-~gadvn~~g  108 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWA-------------AINNRLDVARYLIS-HGADVNAIG  108 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHH-------------HHcCcHHHHHHHHH-cCCCccccC
Confidence            3345566777777777777777776777777777777777777             55677777777777 456666665


Q ss_pred             -CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        130 -KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       130 -~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                       .-+.||||||+++|+..++.+|+++|++++.+|..|.+|+|.|+++++..++-+|+.+|++++.+|.+|+||||||+.+
T Consensus       109 G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  109 GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh
Confidence             4567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CChHHHHHHHhhCCCCCCcccC-CCCccHHHHHhhcCCchhhhhcchh
Q psy17862        209 SHSRDVLMILLSHPNVDPHILS-TSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      |+... +..|+.. ++++..+| ..|.||||.|+..|+...+. +|.+
T Consensus       189 g~~~~-v~~LL~f-~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~  233 (600)
T KOG0509|consen  189 GFALF-VRRLLKF-GASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLE  233 (600)
T ss_pred             cccHH-HHHHHHh-cccccccccccCCchHHHHHhcCCcceEe-hhhh
Confidence            77533 5555554 66667766 67777777777777777777 4443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.5e-32  Score=232.00  Aligned_cols=205  Identities=22%  Similarity=0.281  Sum_probs=168.2

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc-----------------------CchHH
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK-----------------------NKRKI  102 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~-----------------------~~~~l  102 (265)
                      ..+..+.||||+|+..|+.++|++|++. |++++.+|..|.||||+|+..+.                       ...++
T Consensus        67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL  145 (446)
T PHA02946         67 ETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL  145 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHH
Confidence            3445688999999999999999999998 89999999999999999876432                       12355


Q ss_pred             HHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcC--CH
Q psy17862        103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG--HANIVELLIQWGADTQKTTIDGWTPLHSACKWN--NT  178 (265)
Q Consensus       103 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~--~~  178 (265)
                      + |+..++.++++.|+. .|.+++..|..|.||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..+  +.
T Consensus       146 ~-aa~~~~~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~  223 (446)
T PHA02946        146 L-ACTDPSERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV  223 (446)
T ss_pred             H-HHHCCChHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcH
Confidence            4 667788899998887 57888889999999999987754  468899999999999999999999999999875  78


Q ss_pred             HHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCC--------------------ccc-CCCCccHH
Q psy17862        179 ECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP--------------------HIL-STSNESAR  237 (265)
Q Consensus       179 ~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~--------------------~~~-~~~g~t~l  237 (265)
                      +++++|+. |++++.+|..|.||||+|+..++..+++++|+++ |.+.                    +.. +..|.|||
T Consensus       224 ~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~-g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpL  301 (446)
T PHA02946        224 DIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST-SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDF  301 (446)
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC-CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHH
Confidence            88988885 8999999999999999999988766788888876 3321                    111 13567999


Q ss_pred             HHHhhcCCchhhhhcchh
Q psy17862        238 EIATRSGIHYGLFETIEP  255 (265)
Q Consensus       238 ~~a~~~~~~~~~~~ll~~  255 (265)
                      |+|+..|+.+.++.||+.
T Consensus       302 h~Aa~~g~~eivk~Ll~~  319 (446)
T PHA02946        302 KMAVEVGSIRCVKYLLDN  319 (446)
T ss_pred             HHHHHcCCHHHHHHHHHC
Confidence            999999988888888875

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=233.01  Aligned_cols=202  Identities=25%  Similarity=0.256  Sum_probs=128.3

Q ss_pred             CcccHHHHHhcC-ChHHHHHhhccCCCccccCCCCCCcHHHHHHHcC--c--------------------CchHHHHHHh
Q psy17862         51 NKRNILEAAEHN-DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYND--K--------------------NKRKILEAAE  107 (265)
Q Consensus        51 ~~~~l~~A~~~g-~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~--~--------------------~~~~l~~a~~  107 (265)
                      +.||||+|+..| ..+++++|++. |++++.+|..|.||||+|+...  +                    +..+++.++.
T Consensus        83 g~TpLh~A~~~~~~~~iv~lLl~~-ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~  161 (471)
T PHA03095         83 GFTPLHLYLYNATTLDVIKLLIKA-GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK  161 (471)
T ss_pred             CCCHHHHHHHcCCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            444455444444 24444444444 4444444444555555544110  0                    1234444443


Q ss_pred             hC--CHHHHHHHHhcCCCCcccCCCCCChHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCH--HHH
Q psy17862        108 HN--DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYN--GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNT--ECV  181 (265)
Q Consensus       108 ~~--~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~--~~v  181 (265)
                      .+  +.++++.|++ .|.+++..+..|.||||+++..  +..++++.|++.|++++.+|..|.||||+|+..+..  .++
T Consensus       162 ~~~~~~~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v  240 (471)
T PHA03095        162 SRNANVELLRLLID-AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV  240 (471)
T ss_pred             cCCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHH
Confidence            33  3444555544 2344444455555555555543  445566666666666677777777777777777653  467


Q ss_pred             HHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       182 ~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      ..|+..|++++.+|..|+||||+|+..|+. .++++|++. |++++++|..|.|||++|+..|+.+.+..+|...
T Consensus       241 ~~ll~~g~din~~d~~g~TpLh~A~~~~~~-~~v~~LL~~-gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        241 LPLLIAGISINARNRYGQTPLHYAAVFNNP-RACRRLIAL-GADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            778888888888888888999999888887 677777776 8888888999999999999888888888877654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-32  Score=215.68  Aligned_cols=185  Identities=18%  Similarity=0.157  Sum_probs=164.1

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      +.||||+|+..|+.++++.|+.. |++++.+|..|+||||+|             +..|+.++++.|+. .+.+++..+.
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~-Gadvn~~d~~G~TpLh~A-------------a~~g~~eivk~Ll~-~gadin~~~~  125 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFS-GMDDSQFDDKGNTALYYA-------------VDSGNMQTVKLFVK-KNWRLMFYGK  125 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-CCCCcCccCC
Confidence            57999999999999999999987 899999999999999999             66899999999998 5778888888


Q ss_pred             CC-ChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcH-HHHHHh
Q psy17862        131 DG-YSPLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP-LHLAAS  207 (265)
Q Consensus       131 ~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp-L~~a~~  207 (265)
                      .| .||||+|+..|+.+++++|+++++..  .+ ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+.
T Consensus       126 ~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        126 TGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID  203 (284)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHH
Confidence            87 48999999999999999999987543  23 258999999999999999999999999999999999987 999999


Q ss_pred             CCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhhccC
Q psy17862        208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLS  261 (265)
Q Consensus       208 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  261 (265)
                      .|+. +++++|+++ |++++.+|.+| |++      ++.+.++.||++..+.-.
T Consensus       204 ~~~~-e~v~lLl~~-Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        204 NKDL-EMLQALFKY-DINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             cCCH-HHHHHHHHC-CCCCccCcccC-ccC------CCHHHHHHHHHhhhhhcc
Confidence            9998 789999988 99999999865 655      677888888888766543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-31  Score=232.38  Aligned_cols=238  Identities=19%  Similarity=0.164  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcC---ChHHHHHhhccCCCccccCCCCCCc
Q psy17862         11 TEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHN---DSKTLEALLDHDSTLVDAVDKDGYS   87 (265)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~d~~g~t   87 (265)
                      .+.+.+...+..+++++.....     +....+-......+.||||+|+..+   +.++++.|++. |++++.++..|.|
T Consensus        12 ~~~l~~~~~~~~~~~~~~v~~L-----l~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~T   85 (471)
T PHA03095         12 EAALYDYLLNASNVTVEEVRRL-----LAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFT   85 (471)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHH-----HHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCC
Confidence            4555566566666654332221     1222222233445789999999998   99999999998 8999999999999


Q ss_pred             HHHHHHHcCc---------------------CchHHHHHH--hhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcC-
Q psy17862         88 PLHRACYNDK---------------------NKRKILEAA--EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG-  143 (265)
Q Consensus        88 pl~~A~~~~~---------------------~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~-  143 (265)
                      |||+|+..++                     +..++|.|+  ..++.++++.|++ .|.+++..+..|.||||+|+..+ 
T Consensus        86 pLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095         86 PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             HHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCC
Confidence            9999998763                     347899998  4567899999998 57889999999999999998866 


Q ss_pred             -CHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc--CCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChH-HHHHHHh
Q psy17862        144 -HANIVELLIQWGADTQKTTIDGWTPLHSACKW--NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR-DVLMILL  219 (265)
Q Consensus       144 -~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~--~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~-~~~~~L~  219 (265)
                       +.+++++|+++|++++..+..|.||||+++..  +..+++++|++.|++++.+|..|.||||+|+..|+.. .++..|+
T Consensus       165 ~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll  244 (471)
T PHA03095        165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL  244 (471)
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH
Confidence             68899999999999998899999999998875  6789999999999999999999999999999998753 4566677


Q ss_pred             hCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        220 SHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       220 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      .. |++++.+|..|.||||+|+..|+...+..||+..
T Consensus       245 ~~-g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g  280 (471)
T PHA03095        245 IA-GISINARNRYGQTPLHYAAVFNNPRACRRLIALG  280 (471)
T ss_pred             Hc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            66 8999999999999999999999999999988764

>KOG0509|consensus

Probab=100.00  E-value=1.2e-32  Score=230.99  Aligned_cols=209  Identities=26%  Similarity=0.328  Sum_probs=185.4

Q ss_pred             HHHHHHHHhhcCceeeeeeecccCcccc-cccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCC-CCCCcHHH
Q psy17862         13 KMQQLQESIRDGSFNIGQVSAWDDDVVG-IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD-KDGYSPLH   90 (265)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~tpl~   90 (265)
                      -+..+..|.+.|++     +...+.+.+ ....+++++.+-+.||||+.+++.+++++|+++ |+++|..+ .-+.||||
T Consensus        44 ~~~~~v~A~q~G~l-----~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLH  117 (600)
T KOG0509|consen   44 SLDDIVKATQYGEL-----ETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLH  117 (600)
T ss_pred             hhhhhhhHhhcchH-----HHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcch
Confidence            35777888888875     333334444 666677777888999999999999999999999 89999998 56899999


Q ss_pred             HHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHH
Q psy17862         91 RACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH  170 (265)
Q Consensus        91 ~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  170 (265)
                      ||             +++|+..++..|++ .|+++..+|.+|.+|+|.|++.|+.-.+-+|+.++++++.+|..|+||||
T Consensus       118 WA-------------ar~G~~~vv~lLlq-hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLm  183 (600)
T KOG0509|consen  118 WA-------------ARNGHISVVDLLLQ-HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLM  183 (600)
T ss_pred             HH-------------HHcCcHHHHHHHHH-cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHH
Confidence            99             77999999999999 69999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhc
Q psy17862        171 SACKWNNTECVIVLLNYGVDVNAQT-NGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS  243 (265)
Q Consensus       171 ~a~~~~~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~  243 (265)
                      +|+..+....+..|++.|+.+...| ..|.||||||+..|+.. ++.++++ .|.+.+..|.+|+||+++|...
T Consensus       184 wAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~-~v~Ll~~-g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  184 WAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLT-AVKLLLE-GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcc-eEehhhh-cCCcccccccCCCCHHHHHHHh
Confidence            9999999888999999999999988 88999999999999994 5555555 5899999999999999999766

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.4e-32  Score=234.58  Aligned_cols=205  Identities=27%  Similarity=0.295  Sum_probs=190.1

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHH-----HHHcCc--------------------CchHHH
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHR-----ACYNDK--------------------NKRKIL  103 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~-----A~~~~~--------------------~~~~l~  103 (265)
                      ..+.+|||.|+..|+.++|++|++. |++++..+..|.||+|+     |+..+.                    +..+++
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~  111 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLL  111 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHc-CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhh
Confidence            4567999999999999999999998 89999999999999999     876543                    357999


Q ss_pred             HHH--hhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHH
Q psy17862        104 EAA--EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG--HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTE  179 (265)
Q Consensus       104 ~a~--~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  179 (265)
                      .|+  ..|+.++++.|++ .|.+++..+..|.||||+|+..+  +.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus       112 ~A~~~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~  190 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID  190 (480)
T ss_pred             HHHhcccChHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence            999  9999999999999 58889999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCC------CcHHHHHHhCCC--hHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhh
Q psy17862        180 CVIVLLNYGVDVNAQTNGG------LTPLHLAASHSH--SRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFE  251 (265)
Q Consensus       180 ~v~~Ll~~g~~~~~~~~~g------~tpL~~a~~~~~--~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  251 (265)
                      ++++|+++|++++..+..|      .||||+|+..|+  . +++++|++. |++++.+|..|.||||+|+..|+.+.++.
T Consensus       191 iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~-~iv~~Ll~~-g~din~~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        191 VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITL-EVVNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcH-HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999988      899999999988  7 788999987 89999999999999999999999999988


Q ss_pred             cchhhh
Q psy17862        252 TIEPCF  257 (265)
Q Consensus       252 ll~~~~  257 (265)
                      |++...
T Consensus       269 Ll~~ga  274 (480)
T PHA03100        269 LLDLGA  274 (480)
T ss_pred             HHHcCC
Confidence            887644

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-31  Score=239.52  Aligned_cols=206  Identities=25%  Similarity=0.273  Sum_probs=170.8

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcC----------------chHHHHHHhhCC
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN----------------KRKILEAAEHND  110 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~----------------~~~l~~a~~~~~  110 (265)
                      .+..+.||||+|+..|+.++|++|++. |++++..+..|.||||+|+..++.                ..+++.|+..++
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~  252 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNED  252 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence            344578999999999999999999998 899999999999999999987652                346777888888


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCChHHHHHHhcC-CHHHHHHHHhcC
Q psy17862        111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA-NIVELLIQWGADTQKTTIDGWTPLHSACKWN-NTECVIVLLNYG  188 (265)
Q Consensus       111 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~-~~~~v~~Ll~~g  188 (265)
                      .+.++.|+. .|.+++..+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+..+ ..+++++|+..|
T Consensus       253 ~~~~~~Ll~-~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g  331 (682)
T PHA02876        253 LETSLLLYD-AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG  331 (682)
T ss_pred             HHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence            888888877 5777778888888888888888875 5788888888888888888888888888887 588888888888


Q ss_pred             CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       189 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ++++..+..|.||||+|+..+....++.+|+.. |++++.+|..|.||||+|+..|+.+.+..|++.
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~  397 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNARDYCDKTPIHYAAVRNNVVIINTLLDY  397 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            888888888888888888876655777777776 788888888888888888888887777777764

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-31  Score=205.45  Aligned_cols=178  Identities=16%  Similarity=0.169  Sum_probs=156.3

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      +...+||++|+..|+.+.|+.|+..    ++..|..|.||||+|+.++           .++.++++.|++ .|.+++.+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~-----------~~~~eiv~~Ll~-~gadvn~~   82 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKD-----------KVNVEILKFLIE-NGADVNFK   82 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcC-----------CCCHHHHHHHHH-CCCCCCcc
Confidence            4568999999999999999999964    5678899999999995421           358999999999 58888888


Q ss_pred             C-CCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHh--cCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy17862        129 D-KDGYSPLHRACYN---GHANIVELLIQWGADTQKTTIDGWTPLHSACK--WNNTECVIVLLNYGVDVNAQTNGGLTPL  202 (265)
Q Consensus       129 ~-~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~--~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  202 (265)
                      + ..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+.  .++.+++++|++.|++++.+|..|.|||
T Consensus        83 ~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~L  162 (209)
T PHA02859         83 TRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNIL  162 (209)
T ss_pred             CCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHH
Confidence            6 5899999998764   47999999999999999999999999999876  4689999999999999999999999999


Q ss_pred             HHH-HhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        203 HLA-ASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       203 ~~a-~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      |.+ +..++. +++++|+++ |++++.+|..|+||+++|...+
T Consensus       163 h~~a~~~~~~-~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        163 YSYILFHSDK-KIFDFLTSL-GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHhcCCH-HHHHHHHHc-CCCCCCCCCCCCCHHHHHhhhh
Confidence            964 555665 888999987 8999999999999999998876

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-31  Score=225.37  Aligned_cols=179  Identities=25%  Similarity=0.330  Sum_probs=161.7

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..+.+|||.|+..|+.+.|+.|++.+....+..+..|.||||+|             +..|+.+++++|++ .|++++..
T Consensus        66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A-------------~~~~~~~iv~~Ll~-~gad~~~~  131 (413)
T PHA02875         66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA-------------TILKKLDIMKLLIA-RGADPDIP  131 (413)
T ss_pred             CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH-------------HHhCCHHHHHHHHh-CCCCCCCC
Confidence            45679999999999999999999984444455677899999999             66899999999999 58899999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCC-CcHHHHHHh
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG-LTPLHLAAS  207 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g-~tpL~~a~~  207 (265)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++..+..| .||+|+|+.
T Consensus       132 ~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~  211 (413)
T PHA02875        132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIE  211 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988887 489999999


Q ss_pred             CCChHHHHHHHhhCCCCCCccc---CCCCccHHHHHhhc
Q psy17862        208 HSHSRDVLMILLSHPNVDPHIL---STSNESAREIATRS  243 (265)
Q Consensus       208 ~~~~~~~~~~L~~~~~~~~~~~---~~~g~t~l~~a~~~  243 (265)
                      .|+. +++++|+++ |+++++.   +..+.||+++++..
T Consensus       212 ~~~~-~iv~~Ll~~-gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        212 NNKI-DIVRLFIKR-GADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             cCCH-HHHHHHHHC-CcCcchHhhcCCCchHHHHHHHhh
Confidence            9998 799999988 8999875   67889999987644

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=8.2e-31  Score=227.72  Aligned_cols=163  Identities=30%  Similarity=0.353  Sum_probs=139.6

Q ss_pred             CCccccCCCC-CCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHH
Q psy17862         75 STLVDAVDKD-GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ  153 (265)
Q Consensus        75 ~~~~~~~d~~-g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  153 (265)
                      |++++..+.. |.||||+|             +..|+.++++.|+. .|++++..+..|.||||+|+..++.+++++|++
T Consensus       157 gadin~~~~~~g~tpLh~A-------------~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~  222 (477)
T PHA02878        157 GADINMKDRHKGNTALHYA-------------TENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE  222 (477)
T ss_pred             CCCCCccCCCCCCCHHHHH-------------HhCCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            4555555555 66666666             77899999999999 688999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCChHHHHHHhc-CCHHHHHHHHhcCCCccccCC-CCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCC
Q psy17862        154 WGADTQKTTIDGWTPLHSACKW-NNTECVIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSHPNVDPHILST  231 (265)
Q Consensus       154 ~~~~~~~~~~~g~t~l~~a~~~-~~~~~v~~Ll~~g~~~~~~~~-~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~  231 (265)
                      +|++++.++..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|+  ++. .++++|+++ |+|++..|.
T Consensus       223 ~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~~~-~~v~~Ll~~-gadin~~d~  298 (477)
T PHA02878        223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--KSE-RKLKLLLEY-GADINSLNS  298 (477)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc--cCH-HHHHHHHHC-CCCCCCcCC
Confidence            9999999999999999999976 789999999999999999886 7999999994  344 789999987 999999999


Q ss_pred             CCccHHHHHhhcCC-chhhhhcchh
Q psy17862        232 SNESAREIATRSGI-HYGLFETIEP  255 (265)
Q Consensus       232 ~g~t~l~~a~~~~~-~~~~~~ll~~  255 (265)
                      .|.||||+|+..+. ...++.++..
T Consensus       299 ~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        299 YKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCCHHHHHHHHcCccchHHHHHHH
Confidence            99999999998643 3344444443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.7e-31  Score=228.36  Aligned_cols=196  Identities=17%  Similarity=0.281  Sum_probs=162.9

Q ss_pred             cCCCCcccHHHHHhc-----CChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcC
Q psy17862         47 PQDKNKRNILEAAEH-----NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD  121 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~-----g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  121 (265)
                      .+..+.||||.|+..     +..++++.|++. |+++|.+|..|.||||+|+.++.          .++.++++.|++ .
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a~~~~~----------~~~~~iv~~Ll~-~  134 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCLLSNGY----------INNLEILLFMIE-N  134 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHHHHcCC----------cChHHHHHHHHH-c
Confidence            445678999988754     668999999988 89999999999999999965432          247788888888 5


Q ss_pred             CCCcccCCCCCChHHHHHHHcCC---HHHHHHHHHcCCCCCCCC-CCCChHHHHHHhc----CCHHHHHHHHhcCCC---
Q psy17862        122 STLVDAVDKDGYSPLHRACYNGH---ANIVELLIQWGADTQKTT-IDGWTPLHSACKW----NNTECVIVLLNYGVD---  190 (265)
Q Consensus       122 ~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~----~~~~~v~~Ll~~g~~---  190 (265)
                      |++++..+..|.||||+|+..++   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|++   
T Consensus       135 Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        135 GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            78888888899999999988887   889999999998888774 4678899887654    367788888777654   


Q ss_pred             ------------------------------------ccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCc
Q psy17862        191 ------------------------------------VNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNE  234 (265)
Q Consensus       191 ------------------------------------~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~  234 (265)
                                                          ++.+|..|+||||+|+.+|+. +++++|++. |+|++.+|..|.
T Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~-~~v~~LL~~-GAdin~~d~~G~  292 (489)
T PHA02798        215 ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNR-KIFEYLLQL-GGDINIITELGN  292 (489)
T ss_pred             CCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcH-HHHHHHHHc-CCcccccCCCCC
Confidence                                                455677899999999999987 788999887 999999999999


Q ss_pred             cHHHHHhhcCCchhhhhcchhh
Q psy17862        235 SAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       235 t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      |||++|+..|+...+..+++..
T Consensus       293 TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        293 TCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             cHHHHHHHcCcHHHHHHHHccC
Confidence            9999999999888888887653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=222.06  Aligned_cols=197  Identities=20%  Similarity=0.253  Sum_probs=171.4

Q ss_pred             cHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhhCCHHH
Q psy17862         54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEHNDSKT  113 (265)
Q Consensus        54 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~~~~~~  113 (265)
                      -|..|+..|+.+.|+.|+...+..++..+..|.||||+|+..|+                    ...+++.|+..|+.++
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~i   83 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI   83 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            57889999999999999998788889999999999999998765                    2468999999999999


Q ss_pred             HHHHHhcC----------------------CCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHH
Q psy17862        114 LEALLDLD----------------------STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHS  171 (265)
Q Consensus       114 ~~~ll~~~----------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  171 (265)
                      +++|+..+                      |.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        84 v~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~  163 (434)
T PHA02874         84 IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI  163 (434)
T ss_pred             HHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence            99998742                      33456677889999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhh
Q psy17862        172 ACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFE  251 (265)
Q Consensus       172 a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  251 (265)
                      |+..++.+++++|++.|++++..+..|.||||+|+..|+. +++++|++. |++++..+..|.||||+|+..+ ...+..
T Consensus       164 A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~-~iv~~Ll~~-g~~i~~~~~~g~TpL~~A~~~~-~~~i~~  240 (434)
T PHA02874        164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDY-ACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHN-RSAIEL  240 (434)
T ss_pred             HHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHhC-CCCCcCCCCCCCCHHHHHHHCC-hHHHHH
Confidence            9999999999999999999999999999999999999987 788888887 7888899999999999999876 455554


Q ss_pred             cc
Q psy17862        252 TI  253 (265)
Q Consensus       252 ll  253 (265)
                      ++
T Consensus       241 Ll  242 (434)
T PHA02874        241 LI  242 (434)
T ss_pred             HH
Confidence            44

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=226.16  Aligned_cols=193  Identities=20%  Similarity=0.289  Sum_probs=143.6

Q ss_pred             CCcccHHHHHhcC------ChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCC
Q psy17862         50 KNKRNILEAAEHN------DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDST  123 (265)
Q Consensus        50 ~~~~~l~~A~~~g------~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  123 (265)
                      .+.|||+.|+..+      ..++++.|++. |+++|.+|..|.||||.|+..          ...++.++++.|++ .|+
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~tpL~~a~~~----------~~~~~~eiv~~Ll~-~Ga  135 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKF-GADINLKTFNGVSPIVCFIYN----------SNINNCDMLRFLLS-KGI  135 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHh----------cccCcHHHHHHHHH-CCC
Confidence            4456666665543      24566666665 666666666666776666432          12366778888887 467


Q ss_pred             Cc-ccCCCCCChHHHHHHHc--CCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHhcC----CHHHHHHHHhcCCCcc---
Q psy17862        124 LV-DAVDKDGYSPLHRACYN--GHANIVELLIQWGADTQK-TTIDGWTPLHSACKWN----NTECVIVLLNYGVDVN---  192 (265)
Q Consensus       124 ~~-~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~a~~~~----~~~~v~~Ll~~g~~~~---  192 (265)
                      ++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++   
T Consensus       136 din~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        136 NVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             CcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            77 67777788888877653  567888888888887776 4667788888776543    6777777777776554   


Q ss_pred             -----------------------------------ccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHH
Q psy17862        193 -----------------------------------AQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR  237 (265)
Q Consensus       193 -----------------------------------~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l  237 (265)
                                                         .+|..|+||||+|+..|+. +++++|++. |+|++.+|..|.|||
T Consensus       216 ~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~-~~v~~LL~~-Gadin~~d~~G~TpL  293 (494)
T PHA02989        216 NGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNY-EAFNYLLKL-GDDIYNVSKDGDTVL  293 (494)
T ss_pred             CccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCH-HHHHHHHHc-CCCccccCCCCCCHH
Confidence                                               4556699999999999987 788999887 899999999999999


Q ss_pred             HHHhhcCCchhhhhcchhh
Q psy17862        238 EIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       238 ~~a~~~~~~~~~~~ll~~~  256 (265)
                      |+|+..|+.+.+..+|+..
T Consensus       294 ~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        294 TYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             HHHHHcCCHHHHHHHHhcC
Confidence            9999999999888888754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.5e-30  Score=227.87  Aligned_cols=46  Identities=9%  Similarity=0.118  Sum_probs=39.4

Q ss_pred             cCCCCcccHHHHHhcCC--hHHHHHhhccCCCccccCCCCCCcHHHHHH
Q psy17862         47 PQDKNKRNILEAAEHND--SKTLEALLDHDSTLVDAVDKDGYSPLHRAC   93 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~--~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~   93 (265)
                      .+..+.||||+|+..|+  .++|+.|++. |++++.+|..|.||||+|+
T Consensus       208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai  255 (764)
T PHA02716        208 QNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYI  255 (764)
T ss_pred             CCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            34467899999999995  4899999988 8999999999999999875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.3e-29  Score=224.19  Aligned_cols=191  Identities=20%  Similarity=0.137  Sum_probs=161.0

Q ss_pred             CCCCcccHHHHHh--cCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCC--HHHHHHHHhcCCC
Q psy17862         48 QDKNKRNILEAAE--HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND--SKTLEALLDLDST  123 (265)
Q Consensus        48 ~~~~~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~  123 (265)
                      ++.+.+|||+|+.  +++.+++++|++. |++++.+|..|.||||+|             +..|+  .++++.|++ .|+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~A-------------a~~g~~~~eIVklLLe-~GA  238 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTY-------------LITGNVCASVIKKIIE-LGG  238 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-------------HHcCCCCHHHHHHHHH-cCC
Confidence            4567889998764  4678999999988 899999999999999999             55564  589999998 688


Q ss_pred             CcccCCCCCChHHHHH-------------------------------------HHcCCHHHHHHHHHcCCCCCCCCCCCC
Q psy17862        124 LVDAVDKDGYSPLHRA-------------------------------------CYNGHANIVELLIQWGADTQKTTIDGW  166 (265)
Q Consensus       124 ~~~~~~~~g~t~l~~a-------------------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~g~  166 (265)
                      +++.++..|.||||+|                                     +..|+.+++++|++.|++++.+|..|+
T Consensus       239 DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~  318 (764)
T PHA02716        239 DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGR  318 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCC
Confidence            9999999999999975                                     345778999999999999999999999


Q ss_pred             hHHHHHHh--cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC--------------CChHHHHHHHhhCCCCCCcccC
Q psy17862        167 TPLHSACK--WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH--------------SHSRDVLMILLSHPNVDPHILS  230 (265)
Q Consensus       167 t~l~~a~~--~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~--------------~~~~~~~~~L~~~~~~~~~~~~  230 (265)
                      ||||+|+.  .++.+++++|++.|++++.+|..|+||||+|+..              ++. +++++|+++ |++++.+|
T Consensus       319 TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~-eVVklLL~~-GADIn~kn  396 (764)
T PHA02716        319 TCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRL-DVIQCLISL-GADITAVN  396 (764)
T ss_pred             CHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChH-HHHHHHHHC-CCCCCCcC
Confidence            99998764  4678999999999999999999999999998652              444 889999988 89999999


Q ss_pred             CCCccHHHHH----hhcCCchhhhhcchh
Q psy17862        231 TSNESAREIA----TRSGIHYGLFETIEP  255 (265)
Q Consensus       231 ~~g~t~l~~a----~~~~~~~~~~~ll~~  255 (265)
                      ..|.||||.+    ...++.+.+..|+..
T Consensus       397 ~~G~TPLh~y~~~a~n~~~~dIvklLis~  425 (764)
T PHA02716        397 CLGYTPLTSYICTAQNYMYYDIIDCLISD  425 (764)
T ss_pred             CCCCChHHHHHHHHHhcChHHHHHHHHhC
Confidence            9999999942    234555666666553

>KOG0510|consensus

Probab=99.97  E-value=6.2e-30  Score=219.22  Aligned_cols=205  Identities=26%  Similarity=0.329  Sum_probs=156.7

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc-------------------------CchHHH
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK-------------------------NKRKIL  103 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~-------------------------~~~~l~  103 (265)
                      +.+.||||.|+..++.+..+.|+.. ++++-..|.+|++|+|.|++++.                         ...++|
T Consensus       152 e~~~TpLh~A~~~~~~E~~k~Li~~-~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLh  230 (929)
T KOG0510|consen  152 ENGFTPLHLAARKNKVEAKKELINK-GADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLH  230 (929)
T ss_pred             cCCCchhhHHHhcChHHHHHHHHhc-CCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchh
Confidence            3345677777777777755555555 66666677777777777766543                         246888


Q ss_pred             HHHhhCCHHHHHHHHhcCCC--------------CcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHH
Q psy17862        104 EAAEHNDSKTLEALLDLDST--------------LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPL  169 (265)
Q Consensus       104 ~a~~~~~~~~~~~ll~~~~~--------------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  169 (265)
                      .|+..|+.++++.+|..+..              .++..|++|.||||+|++.|+.+++..|+..|++++.++.++.|||
T Consensus       231 lAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spL  310 (929)
T KOG0510|consen  231 LAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPL  310 (929)
T ss_pred             hhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCch
Confidence            88888888888888875322              1334577888899999888888888888888888888888888899


Q ss_pred             HHHHhcCCHHHHHHHHh-cC-CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCc---ccCCCCccHHHHHhhcC
Q psy17862        170 HSACKWNNTECVIVLLN-YG-VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPH---ILSTSNESAREIATRSG  244 (265)
Q Consensus       170 ~~a~~~~~~~~v~~Ll~-~g-~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~---~~~~~g~t~l~~a~~~~  244 (265)
                      |.|+.+|+..+++-|++ .| ...+..|..|.||||.|+..||. .++++|+.. |++..   ..|.+|.||||.|+.+|
T Consensus       311 H~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~-~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  311 HFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD-RVVQLLLNK-GALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             HHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH-HHHHHHHhc-ChhhhcccccccCCchhhhHHHHhc
Confidence            98888888888888887 55 45666778888999988888886 788888877 66655   45888899999999998


Q ss_pred             Cchhhhhcchhh
Q psy17862        245 IHYGLFETIEPC  256 (265)
Q Consensus       245 ~~~~~~~ll~~~  256 (265)
                      +...|..+|..-
T Consensus       389 ~~~av~~Li~~G  400 (929)
T KOG0510|consen  389 NTSAVQKLISHG  400 (929)
T ss_pred             cHHHHHHHHHcC
Confidence            888888887753

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=215.24  Aligned_cols=199  Identities=18%  Similarity=0.287  Sum_probs=158.3

Q ss_pred             CcccHHHHH--hcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhh
Q psy17862         51 NKRNILEAA--EHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEH  108 (265)
Q Consensus        51 ~~~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~  108 (265)
                      +.++||.++  ..++.++|++|++. |++++.+|..|.||||+|+..++                    ...|+|.|+..
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHR-GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHC-cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            356777654  44578899999998 89999999999999999987654                    34678877765


Q ss_pred             C--CHHHHHHHHhcCCCCccc-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcC--CHHHHHH
Q psy17862        109 N--DSKTLEALLDLDSTLVDA-VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN--NTECVIV  183 (265)
Q Consensus       109 ~--~~~~~~~ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~v~~  183 (265)
                      +  ..++++.|+. .|.+++. .+..|.|||| |+..++.+++++|++.|++++.++..|.||||+|+..+  ..+++++
T Consensus       116 ~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~  193 (446)
T PHA02946        116 DDEVIERINLLVQ-YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISW  193 (446)
T ss_pred             CCchHHHHHHHHH-cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHH
Confidence            5  3677888877 5666664 5778888886 55668888888888888888888888999999887655  4688999


Q ss_pred             HHhcCCCccccCCCCCcHHHHHHhCC--ChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCc-hhhhhcchh
Q psy17862        184 LLNYGVDVNAQTNGGLTPLHLAASHS--HSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIH-YGLFETIEP  255 (265)
Q Consensus       184 Ll~~g~~~~~~~~~g~tpL~~a~~~~--~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~ll~~  255 (265)
                      |++.|++++.+|..|.||||+|+..+  +. +++++|+.  +++++.+|..|.||||+|++.++. +.++.++..
T Consensus       194 Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~-~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNV-DIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCCcH-HHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence            99999999999999999999999876  44 67777774  689999999999999999998875 444455544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.1e-29  Score=225.15  Aligned_cols=203  Identities=23%  Similarity=0.249  Sum_probs=173.6

Q ss_pred             cCCCCcccHHHHHhcCChH-HHHHhhccCCCccccCCCCCCcHHHHHHHcCc---------------------CchHHHH
Q psy17862         47 PQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDK---------------------NKRKILE  104 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~-~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~---------------------~~~~l~~  104 (265)
                      .+..+.||||+|+..|+.. +++.|+.. |++++..|..|.||||+|+..+.                     +..++|.
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~  347 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQ  347 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHH
Confidence            3446789999999999974 67777776 89999999999999999998763                     3478999


Q ss_pred             HHhhC-CHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC-HHHHH
Q psy17862        105 AAEHN-DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN-TECVI  182 (265)
Q Consensus       105 a~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~v~  182 (265)
                      |+..+ +.++++.|+. .|.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+. ..+++
T Consensus       348 A~~~~~~~~iv~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk  426 (682)
T PHA02876        348 ASTLDRNKDIVITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK  426 (682)
T ss_pred             HHHhCCcHHHHHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHH
Confidence            98865 5666666666 688999999999999999999999999999999999999999999999999987665 56789


Q ss_pred             HHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        183 VLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       183 ~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      +|++.|++++.+|..|+||||+|+..|...+++++|++. |++++.+|..|.||+++|+..+  ..+..++.
T Consensus       427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~  495 (682)
T PHA02876        427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINIQNQYPLLIALEYH--GIVNILLH  495 (682)
T ss_pred             HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhC--CHHHHHHH
Confidence            999999999999999999999999987544899999987 8999999999999999998765  33444443

>KOG0510|consensus

Probab=99.97  E-value=1e-29  Score=217.85  Aligned_cols=209  Identities=24%  Similarity=0.312  Sum_probs=180.8

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhhC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEHN  109 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~~  109 (265)
                      ....|+|.|+..|+.++++.|++. ++++|..|+.|.||||.||..++                    ...++|.|++.|
T Consensus       120 ~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~  198 (929)
T KOG0510|consen  120 NKNAPLHLAADSGNYSCLKLLLDY-GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSG  198 (929)
T ss_pred             hccCchhhccccchHHHHHHHHHh-cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhc
Confidence            456889999999999999999998 69999999999999999998765                    235789999999


Q ss_pred             CHHHHHHHHhcCC----CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC---------------CCCCCCCCChHHH
Q psy17862        110 DSKTLEALLDLDS----TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD---------------TQKTTIDGWTPLH  170 (265)
Q Consensus       110 ~~~~~~~ll~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~---------------~~~~~~~g~t~l~  170 (265)
                      ..++.+.++.+.|    ..++..+..+.||||.|+..|++++++.+++.|..               ++..|++|.||||
T Consensus       199 s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH  278 (929)
T KOG0510|consen  199 SKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLH  278 (929)
T ss_pred             chhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHH
Confidence            9999999998544    34667788899999999999999999999998753               3467889999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhh
Q psy17862        171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLF  250 (265)
Q Consensus       171 ~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  250 (265)
                      +|++.|..++++.|+..|++++.+++++.||||.|+.+|.+..+.++|.+......+..|..|+||||+|++.||..+++
T Consensus       279 ~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~q  358 (929)
T KOG0510|consen  279 YAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQ  358 (929)
T ss_pred             HHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHH
Confidence            99999999999999999999999999999999999999999777777764445567888999999999999999888888


Q ss_pred             hcchhhhhc
Q psy17862        251 ETIEPCFNN  259 (265)
Q Consensus       251 ~ll~~~~~~  259 (265)
                      -||.+-...
T Consensus       359 lLl~~GA~~  367 (929)
T KOG0510|consen  359 LLLNKGALF  367 (929)
T ss_pred             HHHhcChhh
Confidence            887764443

>KOG0508|consensus

Probab=99.97  E-value=3.1e-30  Score=209.09  Aligned_cols=192  Identities=26%  Similarity=0.362  Sum_probs=170.3

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccC--------CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHH
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAV--------DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL  117 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--------d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~l  117 (265)
                      .....+++||..|+++|+.++|++|+++.++++...        ...|-+||-.|             +..|++++|+.|
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaA-------------saAGHl~vVk~L  103 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAA-------------SAAGHLEVVKLL  103 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHH-------------hccCcHHHHHHH
Confidence            444567899999999999999999999777765543        23466676555             778999999999


Q ss_pred             HhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCC
Q psy17862        118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG  197 (265)
Q Consensus       118 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~  197 (265)
                      +.. |+.+|.....+.|||-.||.-|+.+++++|+++|+++++.|+.|.|.||+||..|+.+|+++|++.|+|++.++..
T Consensus       104 ~~~-ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k  182 (615)
T KOG0508|consen  104 LRR-GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK  182 (615)
T ss_pred             HHh-cCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc
Confidence            995 6899998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       198 g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      |.|+||-|+..|+. +++++|+.+ |+.+ .+|..|+|||..|+..|+.+.|..|+.
T Consensus       183 GNTALH~caEsG~v-divq~Ll~~-ga~i-~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  183 GNTALHDCAESGSV-DIVQLLLKH-GAKI-DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CchHHHhhhhcccH-HHHHHHHhC-Ccee-eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999 789999987 6654 456669999999999998888888875

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=210.49  Aligned_cols=184  Identities=16%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             CCCCcccHHHHHhc---CChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC
Q psy17862         48 QDKNKRNILEAAEH---NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL  124 (265)
Q Consensus        48 ~~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  124 (265)
                      +..+.||||+|+..   |+.++|+.|++. |++++..+..|.||||+|+..++..         ...++++.|++..+. 
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~~---------v~~~~~~~Ll~~~~~-   97 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHVK---------VNKDIAMALLEATGY-   97 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCChh---------HHHHHHHHHHhccCC-
Confidence            45678999997555   889999999987 8999999999999999996644310         001223344432221 


Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHH--HhcCCHHHHHHHHhcCCCccccCC---CC-
Q psy17862        125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA--CKWNNTECVIVLLNYGVDVNAQTN---GG-  198 (265)
Q Consensus       125 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a--~~~~~~~~v~~Ll~~g~~~~~~~~---~g-  198 (265)
                      .+..+  ..++++.|+..++.+++++|+++|++++.++..|.||||.+  +..++.+++++|+++|++++.+|.   .| 
T Consensus        98 ~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~  175 (661)
T PHA02917         98 SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGY  175 (661)
T ss_pred             CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccc
Confidence            11111  11344445555555555555555555555555555555532  233455555555555555543322   12 


Q ss_pred             ----------CcHHHHHHh-----------CCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCc
Q psy17862        199 ----------LTPLHLAAS-----------HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIH  246 (265)
Q Consensus       199 ----------~tpL~~a~~-----------~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~  246 (265)
                                .||||+|+.           .++. +++++|+++ |+|++.+|..|.||||+|+..|+.
T Consensus       176 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~-eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        176 AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP-EVVKCLINH-GIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             ccccccccccccHHHHHHhhcccccccccccCcH-HHHHHHHHC-CCCcccCCCCCCcHHHHHHHcCCC
Confidence                      255555543           1222 455555554 455555555555555555555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7.6e-28  Score=209.86  Aligned_cols=197  Identities=17%  Similarity=0.211  Sum_probs=162.0

Q ss_pred             CCCCcccHHHHHhc--CChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         48 QDKNKRNILEAAEH--NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        48 ~~~~~~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      ...+.++|++++..  ++.++|+.|++. |+++|.++ .+.||||.|+.++.-       ...+..++++.|++ .|+++
T Consensus        32 ~~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~tpL~~a~~~~~~-------~~~~~~~iv~~Ll~-~Gadi  101 (494)
T PHA02989         32 EYRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIETPLCAVLRNREI-------TSNKIKKIVKLLLK-FGADI  101 (494)
T ss_pred             ccCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCCcHHHHHhccCc-------chhhHHHHHHHHHH-CCCCC
Confidence            35677888765544  368999999998 99999886 679999999654431       12456789999998 68999


Q ss_pred             ccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCChHHHHHHhc--CCHHHHHHHHhcCCCccc-cCCCC
Q psy17862        126 DAVDKDGYSPLHRACYN---GHANIVELLIQWGADT-QKTTIDGWTPLHSACKW--NNTECVIVLLNYGVDVNA-QTNGG  198 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~--~~~~~v~~Ll~~g~~~~~-~~~~g  198 (265)
                      +.++..|.||||.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|
T Consensus       102 n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g  181 (494)
T PHA02989        102 NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG  181 (494)
T ss_pred             CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence            99999999999988765   6799999999999999 78999999999998764  589999999999999998 67889


Q ss_pred             CcHHHHHHhCC----ChHHHHHHHhhCCCCC--------------------------------------CcccCCCCccH
Q psy17862        199 LTPLHLAASHS----HSRDVLMILLSHPNVD--------------------------------------PHILSTSNESA  236 (265)
Q Consensus       199 ~tpL~~a~~~~----~~~~~~~~L~~~~~~~--------------------------------------~~~~~~~g~t~  236 (265)
                      .||||+|+..+    +. +++++|++. |++                                      ++.+|..|.||
T Consensus       182 ~tpL~~a~~~~~~~~~~-~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~Tp  259 (494)
T PHA02989        182 LTPMNIYLRNDIDVISI-KVIKYLIKK-GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNP  259 (494)
T ss_pred             CChHHHHHhcccccccH-HHHHHHHhC-CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCH
Confidence            99999997764    44 677777665 554                                      44556779999


Q ss_pred             HHHHhhcCCchhhhhcchhh
Q psy17862        237 REIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       237 l~~a~~~~~~~~~~~ll~~~  256 (265)
                      ||+|+..|+.+.++.||+.-
T Consensus       260 L~~Aa~~~~~~~v~~LL~~G  279 (494)
T PHA02989        260 LLISAKVDNYEAFNYLLKLG  279 (494)
T ss_pred             HHHHHHhcCHHHHHHHHHcC
Confidence            99999999999998888764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.4e-27  Score=205.53  Aligned_cols=196  Identities=18%  Similarity=0.213  Sum_probs=161.5

Q ss_pred             CcccHHHHH--hcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         51 NKRNILEAA--EHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        51 ~~~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      +.++++.+.  ..++.++|++|++. |++++..|..|.||||+|+.+-        +...+..++++.|++ .|++++..
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpL~~~~~n~--------~~~~~~~~iv~~Ll~-~GadiN~~  105 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINL-GANVNGLDNEYSTPLCTILSNI--------KDYKHMLDIVKILIE-NGADINKK  105 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCCCCCCCChHHHHHHhH--------HhHHhHHHHHHHHHH-CCCCCCCC
Confidence            345555333  34579999999998 8999999999999999986431        122456899999998 68999999


Q ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC---HHHHHHHHhcCCCccccC-CCCCcH
Q psy17862        129 DKDGYSPLHRACYNG---HANIVELLIQWGADTQKTTIDGWTPLHSACKWNN---TECVIVLLNYGVDVNAQT-NGGLTP  201 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~v~~Ll~~g~~~~~~~-~~g~tp  201 (265)
                      +..|.||||+|+..+   +.+++++|+++|++++.++..|.||||+|+..+.   .+++++|++.|++++.++ ..|.||
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~  185 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDT  185 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcH
Confidence            999999999999876   6899999999999999999999999999999987   999999999999999875 578999


Q ss_pred             HHHHHhCC----ChHHHHHHHhhCC--------------------------------------CCCCcccCCCCccHHHH
Q psy17862        202 LHLAASHS----HSRDVLMILLSHP--------------------------------------NVDPHILSTSNESAREI  239 (265)
Q Consensus       202 L~~a~~~~----~~~~~~~~L~~~~--------------------------------------~~~~~~~~~~g~t~l~~  239 (265)
                      ||.++..+    +. +++++|++++                                      ++|++.+|..|.||||+
T Consensus       186 Lh~~~~~~~~~~~~-~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~  264 (489)
T PHA02798        186 LHCYFKYNIDRIDA-DILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYY  264 (489)
T ss_pred             HHHHHHhccccCCH-HHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHH
Confidence            99887643    33 4555554431                                      35667788899999999


Q ss_pred             HhhcCCchhhhhcchhhh
Q psy17862        240 ATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       240 a~~~~~~~~~~~ll~~~~  257 (265)
                      |+..|+...++.||+.-.
T Consensus       265 A~~~~~~~~v~~LL~~GA  282 (489)
T PHA02798        265 SVSHNNRKIFEYLLQLGG  282 (489)
T ss_pred             HHHcCcHHHHHHHHHcCC
Confidence            999999999998887643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.5e-27  Score=195.84  Aligned_cols=172  Identities=16%  Similarity=0.150  Sum_probs=153.3

Q ss_pred             HHHhcCChHHHHHhhccCCCccc------cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         57 EAAEHNDSKTLEALLDHDSTLVD------AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        57 ~A~~~g~~~~v~~ll~~~~~~~~------~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      .|+..+..++++.|+.+ |++++      ..+..++|+||+++.+           ..++.++++.|++ .|++++..  
T Consensus        83 ~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~~~~~~~~L~~~~~n-----------~~n~~eiV~~LI~-~GADIn~~--  147 (437)
T PHA02795         83 LFAYITYKDIISALVSK-NYMEDIFSIIIKNCNSVQDLLLYYLSN-----------AYVEIDIVDFMVD-HGAVIYKI--  147 (437)
T ss_pred             HHhhcchHHHHHHHHhc-ccccchhhhhhhccccccHHHHHHHHh-----------cCCCHHHHHHHHH-CCCCCCCC--
Confidence            89999999999999998 88888      6788899999999552           2699999999998 68888774  


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKT------TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL  204 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~------~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  204 (265)
                      .+.||+|+|+..++.+++++|+++|++....      +..+.+++|.|...+..+++++|+.+|++++.+|..|.||||+
T Consensus       148 ~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~  227 (437)
T PHA02795        148 ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYR  227 (437)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHH
Confidence            4589999999999999999999999743222      1347889999999999999999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCC
Q psy17862        205 AASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGI  245 (265)
Q Consensus       205 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~  245 (265)
                      |+..|+. +++++|+++ |++++.++..|.||||+|+..|+
T Consensus       228 Aa~~g~~-eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        228 AIYAGYI-DLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHcCCH-HHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999998 789999988 89999999999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=4.1e-26  Score=209.22  Aligned_cols=176  Identities=25%  Similarity=0.322  Sum_probs=161.3

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      ...++|+.||..|+.+.++.|++. |.++|..|..|.||||+|             +..|+.++++.|+. .|++++.+|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~A-------------a~~g~~~~v~~Ll~-~gadin~~d  588 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIA-------------ASKGYEDCVLVLLK-HACNVHIRD  588 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-------------HHcChHHHHHHHHh-cCCCCCCcC
Confidence            456889999999999999999988 899999999999999999             77899999999998 688999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      ..|.||||+|+..|+.+++++|++.++..+.  ..+.++||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            9999999999999999999999988766543  45779999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhCCCCCCcccCCCC-ccHHHHHhhcC
Q psy17862        210 HSRDVLMILLSHPNVDPHILSTSN-ESAREIATRSG  244 (265)
Q Consensus       210 ~~~~~~~~L~~~~~~~~~~~~~~g-~t~l~~a~~~~  244 (265)
                      +. +++++|+++ |++++..|..| .||++++....
T Consensus       667 ~~-~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        667 HV-DMVRLLIMN-GADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             cH-HHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHHH
Confidence            98 789999887 89999999988 99999885543

>KOG4177|consensus

Probab=99.94  E-value=1.2e-26  Score=209.56  Aligned_cols=153  Identities=29%  Similarity=0.405  Sum_probs=121.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHH
Q psy17862        100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTE  179 (265)
Q Consensus       100 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  179 (265)
                      .+++.|+..|+.+.+..+++ .+++.+.....+.+++|.|...+...+++.++++|+.++.++..|.||||.|+.+|+..
T Consensus       476 T~Lhlaaq~Gh~~~~~llle-~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~  554 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLE-GGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVD  554 (1143)
T ss_pred             cchhhhhccCCchHHHHhhh-cCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCch
Confidence            45555555555555555555 33444444455555555555555555666666667777778888999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        180 CVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       180 ~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +|++|+++|++++.+++.|+||||.|+..|+. +++++|+++ |+++|..+.+|.|||++|.+.|+.+.+..++..
T Consensus       555 ~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~-~i~~LLlk~-GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  555 LVKFLLEHGADVNAKDKLGYTPLHQAAQQGHN-DIAELLLKH-GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             HHHHhhhCCccccccCCCCCChhhHHHHcChH-HHHHHHHHc-CCCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            99999999999999999999999999999987 899999998 999999999999999999999988877766554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1e-25  Score=174.55  Aligned_cols=176  Identities=19%  Similarity=0.226  Sum_probs=145.8

Q ss_pred             HHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcC--ChHHHHHhhccCCCccccCC-CCCCcHHH
Q psy17862         14 MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHN--DSKTLEALLDHDSTLVDAVD-KDGYSPLH   90 (265)
Q Consensus        14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g--~~~~v~~ll~~~~~~~~~~d-~~g~tpl~   90 (265)
                      -..|..|++.|++......  ..   ..   ...+..+.||||+|+..+  +.+++++|++. |++++.++ ..|.||||
T Consensus        22 ~~pL~~A~~~~~~~~vk~L--i~---~~---n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKW--IK---FV---NDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALH   92 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHH--HH---hh---hccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHH
Confidence            3567888888876433221  11   11   223456889999999854  89999999998 89999997 48999999


Q ss_pred             HHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCChH
Q psy17862         91 RACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY--NGHANIVELLIQWGADTQKTTIDGWTP  168 (265)
Q Consensus        91 ~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~g~t~  168 (265)
                      +|+..+          ..++.++++.|++ .|++++.++..|.||||+|+.  .++.+++++|+++|++++.+|..|.||
T Consensus        93 ~a~~~~----------~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~  161 (209)
T PHA02859         93 HYLSFN----------KNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNI  161 (209)
T ss_pred             HHHHhC----------ccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcH
Confidence            985421          1357899999998 689999999999999999976  468999999999999999999999999


Q ss_pred             HHH-HHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        169 LHS-ACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       169 l~~-a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      ||. ++..++.+++++|++.|++++.+|..|+|||++|+..+
T Consensus       162 Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        162 LYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            995 56788999999999999999999999999999998763

>KOG0502|consensus

Probab=99.94  E-value=7.2e-27  Score=172.24  Aligned_cols=192  Identities=24%  Similarity=0.263  Sum_probs=169.0

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      ++...+...++.|+-.+..+.+...+.+ +...|..+-.+.+|++++             +.+.+.+.+..+.+   ..+
T Consensus        91 ~t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnevs~~p~s~~sls-------------Vhql~L~~~~~~~~---n~V  153 (296)
T KOG0502|consen   91 ETDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEVSLMPWSPLSLS-------------VHQLHLDVVDLLVN---NKV  153 (296)
T ss_pred             CCCchhhhhhhhcCCCCCcceeeeeecc-cccCCccccccCChhhHH-------------HHHHHHHHHHHHhh---ccc
Confidence            3444577888888889988888888887 788888888899999999             44556666665554   467


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a  205 (265)
                      |..|+.|.|||.||+.+|+++++++|++.|+++....+...++|.+|++.|..++|++|+.++.|+|..|.+|-|||.||
T Consensus       154 N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyA  233 (296)
T KOG0502|consen  154 NACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYA  233 (296)
T ss_pred             cCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        206 ASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       206 ~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      ++-|+. ++++.|+.. |++++..+..|.++++.|+..|+. .|+.+|++..
T Consensus       234 vrgnhv-kcve~Ll~s-GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  234 VRGNHV-KCVESLLNS-GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA  282 (296)
T ss_pred             ecCChH-HHHHHHHhc-CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence            999887 788888876 999999999999999999999955 8887777643

>KOG0512|consensus

Probab=99.94  E-value=1.3e-25  Score=159.71  Aligned_cols=156  Identities=47%  Similarity=0.737  Sum_probs=149.0

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +..+....|+.||+.....++.+|.+|.||||-|+++|+.++++.|+..|++++.+...|+||||.||..++.+|+-+|+
T Consensus        71 ae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL  150 (228)
T KOG0512|consen   71 AEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL  150 (228)
T ss_pred             HhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHH
Confidence            77899999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhhccC
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLS  261 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  261 (265)
                      ++|+|++.......||||.|+...+......+|+..+++++..++..+.||+++|-+.+-..-+++.++.|+++-+
T Consensus       151 qhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e~~~~~~~  226 (228)
T KOG0512|consen  151 QHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVEGCMNSSP  226 (228)
T ss_pred             hccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999889999999999999999999999999999999999999999999988743

>KOG0508|consensus

Probab=99.93  E-value=3.9e-26  Score=185.46  Aligned_cols=186  Identities=27%  Similarity=0.284  Sum_probs=162.4

Q ss_pred             HHHhcCChHHHHHhhccCC-Cc---cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc-----
Q psy17862         57 EAAEHNDSKTLEALLDHDS-TL---VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA-----  127 (265)
Q Consensus        57 ~A~~~g~~~~v~~ll~~~~-~~---~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-----  127 (265)
                      .|++.|..-.+..|+.... .+   +--...+|.|||-+|             +++|+.+++++|+++.++.+..     
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~ia-------------aRnGH~~vVeyLle~~~a~~e~~GsV~   76 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIA-------------ARNGHADVVEYLLEHCRASPEQGGSVR   76 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeee-------------hhcCcHHHHHHHHHHhcCCccCCceEE
Confidence            6788888887777776522 11   112246788999999             7799999999999976665543     


Q ss_pred             ---CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy17862        128 ---VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL  204 (265)
Q Consensus       128 ---~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  204 (265)
                         ....|.+||..|+..||+++++.|+++|+++|.......|||-.||.-|+.+++++|+++|+|+++.|..|.|.||+
T Consensus        77 FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmI  156 (615)
T KOG0508|consen   77 FDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMI  156 (615)
T ss_pred             eCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEe
Confidence               33568899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        205 AASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       205 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      |+..|+. ++.++|++. |+|++.++.+|.|+||.++..|+.+.++.|++...
T Consensus       157 a~ykGh~-~I~qyLle~-gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  157 ACYKGHV-DIAQYLLEQ-GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             eeccCch-HHHHHHHHh-CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            9999998 788888887 99999999999999999999999999999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.6e-25  Score=182.93  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=144.0

Q ss_pred             cCCCCcccHHHHHh--cCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC
Q psy17862         47 PQDKNKRNILEAAE--HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL  124 (265)
Q Consensus        47 ~~~~~~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  124 (265)
                      .....+++||.|+.  .|+.++|++|+++ |++++..  ++.||+|+|             +..++.+++++|+..+...
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn~~--~~~t~lh~A-------------~~~~~~eIVk~Lls~Ga~~  175 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIYKI--ECLNAYFRG-------------ICKKESSVVEFILNCGIPD  175 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCCCC--CCCCHHHHH-------------HHcCcHHHHHHHHhcCCcc
Confidence            34557899999999  8999999999998 9999885  458999999             6689999999999964323


Q ss_pred             cccCC-----CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCC
Q psy17862        125 VDAVD-----KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL  199 (265)
Q Consensus       125 ~~~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~  199 (265)
                      .+..+     ..+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|+
T Consensus       176 ~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~  255 (437)
T PHA02795        176 ENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGY  255 (437)
T ss_pred             cccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            22221     2477899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhCCC-------hHHHHHHHhhCCCCCCcccC
Q psy17862        200 TPLHLAASHSH-------SRDVLMILLSHPNVDPHILS  230 (265)
Q Consensus       200 tpL~~a~~~~~-------~~~~~~~L~~~~~~~~~~~~  230 (265)
                      ||||+|+..|+       ..+++++|+++ |++++...
T Consensus       256 TpLh~Aa~~g~~~~~~~~~~eIvelLL~~-gadI~~~~  292 (437)
T PHA02795        256 TCLDVAVDRGSVIARRETHLKILEILLRE-PLSIDCIK  292 (437)
T ss_pred             CHHHHHHHcCCcccccccHHHHHHHHHhC-CCCCCchh
Confidence            99999999984       23788899887 77776544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=8.7e-25  Score=190.49  Aligned_cols=194  Identities=15%  Similarity=0.069  Sum_probs=155.7

Q ss_pred             CCCCcccHHHHHhcC---ChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcC-CC
Q psy17862         48 QDKNKRNILEAAEHN---DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD-ST  123 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~  123 (265)
                      +..|.||||+|+..|   +.++|++|+++ |++++.+|..|.||||+|+.++           .++.++++.|+..+ ++
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~-----------~~~~eIv~~Ll~~~~~~  105 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRK-----------YVKSQIVHLLISSYSNA  105 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcC-----------CCcHHHHHHHHhcCCCC
Confidence            346789999999997   59999999987 9999999999999999994321           23799999999853 34


Q ss_pred             CcccCCCCCChHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCC-----CCChHHHHHHhcCCHHHHHHHHhcCCCcc---
Q psy17862        124 LVDAVDKDGYSPLHRACY--NGHANIVELLIQ-WGADTQKTTI-----DGWTPLHSACKWNNTECVIVLLNYGVDVN---  192 (265)
Q Consensus       124 ~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~-----~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~---  192 (265)
                      ..+..+.-+.+||+.++.  +++.+++++|+. .+++++....     .|.+|++++...+..++|++|+++|++++   
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~  185 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYV  185 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccc
Confidence            446677678889999888  889999999997 6678775532     78999999999999999999999999985   


Q ss_pred             ----ccCCCCCcH-HHHHHhC-----CChHHHHHHHhhCCCCCCcccCCCCccHHHH--HhhcCCchhhhhcch
Q psy17862        193 ----AQTNGGLTP-LHLAASH-----SHSRDVLMILLSHPNVDPHILSTSNESAREI--ATRSGIHYGLFETIE  254 (265)
Q Consensus       193 ----~~~~~g~tp-L~~a~~~-----~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~--a~~~~~~~~~~~ll~  254 (265)
                          ..+..+.+| ||+++..     .+..+++++|+++ |++++.+|..|.||||+  |...|+.+.+..||+
T Consensus       186 ~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~-GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        186 FRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDN-NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence                234444444 5533332     2234899999999 89999999999999994  666777888888887

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.3e-23  Score=181.47  Aligned_cols=187  Identities=11%  Similarity=0.074  Sum_probs=155.5

Q ss_pred             CCcccHHHHHhcC-------ChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc-------------------------
Q psy17862         50 KNKRNILEAAEHN-------DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK-------------------------   97 (265)
Q Consensus        50 ~~~~~l~~A~~~g-------~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~-------------------------   97 (265)
                      .++||||+|+..+       ..++++.|+.+ |++++..|..|.||||+|+.+..                         
T Consensus       174 ~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~-g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~  252 (631)
T PHA02792        174 MGKTVLYYYIITRSQDGYATSLDVINYLISH-EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSN  252 (631)
T ss_pred             CCCchHHHHHhhCCcccccCCHHHHHHHHhC-CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHH
Confidence            4789999999999       89999999998 89999999999999999986541                         


Q ss_pred             -----------------------------------------------------CchHHHHHHhhC--CHHHHHHHHhcCC
Q psy17862         98 -----------------------------------------------------NKRKILEAAEHN--DSKTLEALLDLDS  122 (265)
Q Consensus        98 -----------------------------------------------------~~~~l~~a~~~~--~~~~~~~ll~~~~  122 (265)
                                                                           -+..++.-...+  +.++++.|++. |
T Consensus       253 y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~-G  331 (631)
T PHA02792        253 YLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE-G  331 (631)
T ss_pred             HHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC-C
Confidence                                                                 001222233333  56788888884 5


Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--ChHHHHHHhcCCH---HHHHHHHhcCCCccccCCC
Q psy17862        123 TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG--WTPLHSACKWNNT---ECVIVLLNYGVDVNAQTNG  197 (265)
Q Consensus       123 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~v~~Ll~~g~~~~~~~~~  197 (265)
                      +....  ....++++.|+..|+.+++++|+++|++++.++..|  .||||+|+.....   +++++|+++|++++.+|..
T Consensus       332 a~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~  409 (631)
T PHA02792        332 ATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH  409 (631)
T ss_pred             Ccccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc
Confidence            55431  225567899999999999999999999999988775  6999988776654   4689999999999999999


Q ss_pred             CCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhh
Q psy17862        198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATR  242 (265)
Q Consensus       198 g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~  242 (265)
                      |.||||+|+..++. +++++|+++ |++++.++..|.|||++|+.
T Consensus       410 G~TPLh~Aa~~~n~-eivelLLs~-GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        410 GRSILYYCIESHSV-SLVEWLIDN-GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             CcchHHHHHHcCCH-HHHHHHHHC-CCCCCCcCCCCCCHHHHHHH
Confidence            99999999999887 789999998 99999999999999999976

>KOG0514|consensus

Probab=99.92  E-value=5.6e-25  Score=173.41  Aligned_cols=178  Identities=29%  Similarity=0.413  Sum_probs=153.4

Q ss_pred             CChHHHHHhhccCC--------CccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCC
Q psy17862         62 NDSKTLEALLDHDS--------TLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGY  133 (265)
Q Consensus        62 g~~~~v~~ll~~~~--------~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  133 (265)
                      -+.+.|...|...+        .-||..|.+|+|+||||             +...|+++|+.||+.+-++++..++.|.
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYs-------------VSHaNF~VV~~LLDSgvC~VD~qNrAGY  303 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYA-------------VSHANFDVVSILLDSGVCDVDQQNRAGY  303 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeee-------------ecccchHHHHHHhccCcccccccccccc
Confidence            35777777665432        24788899999999999             7789999999999988889999999999


Q ss_pred             hHHHHHHHc-----CCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        134 SPLHRACYN-----GHANIVELLIQWGADTQKT-TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       134 t~l~~a~~~-----~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      ||+++++..     .+..+|..|...| ++|.+ ...|.|+|++|+.+|+.++++.|+..|+|+|++|.+|.|+|++|+.
T Consensus       304 tpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~E  382 (452)
T KOG0514|consen  304 TPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAE  382 (452)
T ss_pred             cHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhh
Confidence            999998754     3567888888875 45654 4679999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       208 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +||. +++++|+..++||....|.+|-|+|.+|...|+.+ |-.||--
T Consensus       383 HGhk-EivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e-Ia~mlYa  428 (452)
T KOG0514|consen  383 HGHK-EIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE-IAVMLYA  428 (452)
T ss_pred             hChH-HHHHHHhccCcccceeecCCCchhhhhHHhcCchH-HHHHHHH
Confidence            9998 89999999999999999999999999999999554 4444433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.6e-24  Score=197.49  Aligned_cols=229  Identities=20%  Similarity=0.177  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHhhcCceeeeeeecccCcccccccCCC-cCCCCcccHH-HHHhcCChHHHHHhhccCCCccccCCCCCC
Q psy17862          9 ELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRN-PQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGY   86 (265)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~   86 (265)
                      .++..-..+..|++.|+.......  .+...  ..+.+ .+..+.|||| .|+..++.++++.|+.. +.    .+..|.
T Consensus        13 ~~~~~~~~~l~A~~~g~~~~v~~l--L~~~~--~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~~G~   83 (743)
T TIGR00870        13 PLSDEEKAFLPAAERGDLASVYRD--LEEPK--KLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGAVGD   83 (743)
T ss_pred             CCCHHHHHHHHHHHcCCHHHHHHH--hcccc--ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCCcCh
Confidence            455667888999999986433211  11111  22222 3456789999 77788888888888877 44    567899


Q ss_pred             cHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCC---------CcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy17862         87 SPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDST---------LVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD  157 (265)
Q Consensus        87 tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~---------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  157 (265)
                      ||||.|+..+.          .+...++..+......         ........|.||||+|+..|+.+++++|+++|++
T Consensus        84 T~Lh~A~~~~~----------~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd  153 (743)
T TIGR00870        84 TLLHAISLEYV----------DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS  153 (743)
T ss_pred             HHHHHHHhccH----------HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Confidence            99999964211          1112223333322111         0111234699999999999999999999999999


Q ss_pred             CCCCC--------------CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCC--------hHHHH
Q psy17862        158 TQKTT--------------IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH--------SRDVL  215 (265)
Q Consensus       158 ~~~~~--------------~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~--------~~~~~  215 (265)
                      ++..+              ..|.||||.|+..++.+++++|+++|+|++.+|..|+||||+|+..+.        ...+.
T Consensus       154 v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~  233 (743)
T TIGR00870       154 VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMY  233 (743)
T ss_pred             CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            98643              248899999999999999999999999999999999999999999862        11233


Q ss_pred             HHHhhCC--CCCC----cccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        216 MILLSHP--NVDP----HILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       216 ~~L~~~~--~~~~----~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      .+++...  ..+.    ++.|.+|.||||+|+..|+.+.++.++...
T Consensus       234 ~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       234 NFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             HHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            4444331  2233    678999999999999999999999998854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.2e-23  Score=187.11  Aligned_cols=192  Identities=17%  Similarity=0.102  Sum_probs=150.9

Q ss_pred             CcCCCCcccHHHHHhcCChH----HHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcC
Q psy17862         46 NPQDKNKRNILEAAEHNDSK----TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD  121 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~----~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  121 (265)
                      ..+..+.||||+|+..|+.+    +++.|++..+. ++..+  ..+++++|             +..++.++++.|++ .
T Consensus        63 ~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~--~~~~~~~a-------------~~~~~~e~vk~Ll~-~  125 (661)
T PHA02917         63 HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND--FNIFSYMK-------------SKNVDVDLIKVLVE-H  125 (661)
T ss_pred             ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC--cchHHHHH-------------hhcCCHHHHHHHHH-c
Confidence            44456789999999999854    55677766443 34433  23566666             67889999999998 6


Q ss_pred             CCCcccCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC---CC-----------ChHHHHHHh-----------
Q psy17862        122 STLVDAVDKDGYSPLHRAC--YNGHANIVELLIQWGADTQKTTI---DG-----------WTPLHSACK-----------  174 (265)
Q Consensus       122 ~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~---~g-----------~t~l~~a~~-----------  174 (265)
                      |++++.+|..|.||||+|+  ..|+.+++++|+++|++++..+.   .|           .||||+|+.           
T Consensus       126 Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  205 (661)
T PHA02917        126 GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA  205 (661)
T ss_pred             CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence            9999999999999999654  57899999999999999986543   23           599999986           


Q ss_pred             cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChH-HHHHHHhhCCCCCCc----ccCCCCccHHHHHhhcC-----
Q psy17862        175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR-DVLMILLSHPNVDPH----ILSTSNESAREIATRSG-----  244 (265)
Q Consensus       175 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~-~~~~~L~~~~~~~~~----~~~~~g~t~l~~a~~~~-----  244 (265)
                      +++.+++++|++.|++++.+|..|.||||+|+..|+.+ +++++|+.  |++++    ..+..|.||+++|+..+     
T Consensus       206 ~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~  283 (661)
T PHA02917        206 YVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRY  283 (661)
T ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccc
Confidence            46899999999999999999999999999999999863 68888875  66654    46677889899998422     


Q ss_pred             ----Cchhhhhcchhh
Q psy17862        245 ----IHYGLFETIEPC  256 (265)
Q Consensus       245 ----~~~~~~~ll~~~  256 (265)
                          +.+.++.||+..
T Consensus       284 ~~~v~~~iv~~Li~~G  299 (661)
T PHA02917        284 NKDVDLDLVKLFLENG  299 (661)
T ss_pred             cccchHHHHHHHHhCC
Confidence                345666666654

>KOG4177|consensus

Probab=99.92  E-value=3e-24  Score=194.25  Aligned_cols=191  Identities=28%  Similarity=0.394  Sum_probs=165.2

Q ss_pred             CCcccHHHHHhcC-ChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcC--------------------chHHHHHHhh
Q psy17862         50 KNKRNILEAAEHN-DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN--------------------KRKILEAAEH  108 (265)
Q Consensus        50 ~~~~~l~~A~~~g-~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~--------------------~~~l~~a~~~  108 (265)
                      .+.|++|.|+..| ..+....++.. +.++|..-..|.||||+|.+.|+.                    -.++|.+...
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh
Confidence            4567777777777 44444444444 777788778888888888776652                    2588889999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q psy17862        109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG  188 (265)
Q Consensus       109 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g  188 (265)
                      +....++.++. .|++.+.++..|.||||.||..|+.++|++|+++|++++.++..|+||||.|+..|+.+|+.+|+++|
T Consensus       518 ~~v~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G  596 (1143)
T KOG4177|consen  518 DTVKVAKILLE-HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG  596 (1143)
T ss_pred             hhHHHHHHHhh-cCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence            99999999998 68999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCC-----CcccCCCCccHHHHHhhcC
Q psy17862        189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD-----PHILSTSNESAREIATRSG  244 (265)
Q Consensus       189 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~-----~~~~~~~g~t~l~~a~~~~  244 (265)
                      +++|..|.+|.|||++|+..|+. .++++|+.. +.+     +...+..|.+|..++...-
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~-~~~k~l~~~-~~~~~~~~~~~e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYL-SVVKLLKVV-TATPAATDPVKENRKGAVPEDVAEELD  655 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhccc-chhhHHHhc-cCccccccchhhhhcccChhhHHHHhh
Confidence            99999999999999999999998 788888876 666     7777889999999986653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.9e-23  Score=181.01  Aligned_cols=143  Identities=17%  Similarity=0.132  Sum_probs=121.3

Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCC----HHHHHHHHHcCC--CCCCCCCCCChHHHH---HHhcC---
Q psy17862        109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH----ANIVELLIQWGA--DTQKTTIDGWTPLHS---ACKWN---  176 (265)
Q Consensus       109 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~--~~~~~~~~g~t~l~~---a~~~~---  176 (265)
                      -+.++++.|++ .|++++.. ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||.   +...+   
T Consensus       357 v~ieIvelLIs-~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        357 VSIPILRCMLD-NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             CcHHHHHHHHH-CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            35788999998 58899975 789999999988875    899999999997  688899999999984   33222   


Q ss_pred             ------CHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCC-CCccHHHHHhhc--CCch
Q psy17862        177 ------NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILST-SNESAREIATRS--GIHY  247 (265)
Q Consensus       177 ------~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~-~g~t~l~~a~~~--~~~~  247 (265)
                            ..+++++|+.+|++++.+|..|.||||+|+..++. +++++|+++ |++++.++. .|.||+|+|+..  ++.+
T Consensus       435 ~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~-eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~~~~~~~e  512 (672)
T PHA02730        435 HCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNI-QFARRLLEY-GASVNTTSRSIINTAIQKSSYRRENKTK  512 (672)
T ss_pred             cccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCH-HHHHHHHHC-CCCCCCCCCcCCcCHHHHHHHhhcCcHH
Confidence                  23579999999999999999999999999999887 789999998 999999997 699999999874  5566


Q ss_pred             hhhhcchh
Q psy17862        248 GLFETIEP  255 (265)
Q Consensus       248 ~~~~ll~~  255 (265)
                      .+..+|+.
T Consensus       513 Iv~~LLs~  520 (672)
T PHA02730        513 LVDLLLSY  520 (672)
T ss_pred             HHHHHHHc
Confidence            66666654

>KOG0502|consensus

Probab=99.91  E-value=2.3e-24  Score=159.04  Aligned_cols=173  Identities=25%  Similarity=0.280  Sum_probs=152.7

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      .+.-.+.+++.+++.+.+.+.+..+.+.   .+|..|+.|.|||.||             +++|++..+++|+. .|+++
T Consensus       124 evs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWA-------------aa~G~i~vV~fLL~-~GAdp  186 (296)
T KOG0502|consen  124 EVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWA-------------AAKGHIPVVQFLLN-SGADP  186 (296)
T ss_pred             ccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHH-------------HhcCchHHHHHHHH-cCCCh
Confidence            3444567899999999999888877765   6899999999999999             78999999999999 68899


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a  205 (265)
                      +...+...++|.+|++.|..+++++|+.++.++|..|..|.|||-+|++.++.+|++.|+..|++++..+..|++++..|
T Consensus       187 ~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlA  266 (296)
T KOG0502|consen  187 DALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLA  266 (296)
T ss_pred             hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHhhCCCCCCcccCCCCccHHH
Q psy17862        206 ASHSHSRDVLMILLSHPNVDPHILSTSNESARE  238 (265)
Q Consensus       206 ~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~  238 (265)
                      +..|+. .+...+.++  +.....|+.-+||+|
T Consensus       267 ValGyr-~Vqqvie~h--~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  267 VALGYR-IVQQVIEKH--ALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHhhhH-HHHHHHHHH--HHHHhhcccCCCCCC
Confidence            999986 565555554  445566666666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=154.82  Aligned_cols=145  Identities=23%  Similarity=0.207  Sum_probs=124.6

Q ss_pred             CCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHH----HHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHH---
Q psy17862         75 STLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK----TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI---  147 (265)
Q Consensus        75 ~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~---  147 (265)
                      +++++..+.++.+++|.|             ++.|+.+    ++++|+. .+..++..|..|.||||+|+..|+.+.   
T Consensus        10 ~~~~~~~~~~~~~~l~~a-------------~~~g~~~~l~~~~~~l~~-~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~   75 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRI-------------CRTGNIYELMEVAPFISG-DGHLLHRYDHHGRQCTHMVAWYDRANAVMK   75 (166)
T ss_pred             chHHhhhccCCCcHHHHH-------------HHcCCHHHHHHHHHHHhh-cchhhhccCCCCCcHHHHHHHhCccCHHHH
Confidence            566777888888999999             6678774    4445555 577788889999999999999988654   


Q ss_pred             HHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCC
Q psy17862        148 VELLIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLN-YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD  225 (265)
Q Consensus       148 ~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~  225 (265)
                      +++|+++|++++.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..++. +++++|+.+ |++
T Consensus        76 i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~-~iv~~Ll~~-ga~  153 (166)
T PHA02743         76 IELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDR-RMMEILRAN-GAV  153 (166)
T ss_pred             HHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCC
Confidence            899999999999988 589999999999999999999995 7999999999999999999999987 788999887 899


Q ss_pred             CcccCCCCcc
Q psy17862        226 PHILSTSNES  235 (265)
Q Consensus       226 ~~~~~~~g~t  235 (265)
                      ++.++..|.+
T Consensus       154 ~~~~~~~~~~  163 (166)
T PHA02743        154 CDDPLSIGLS  163 (166)
T ss_pred             CCCcccCCcc
Confidence            9998887753

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=8.4e-23  Score=176.47  Aligned_cols=201  Identities=12%  Similarity=0.014  Sum_probs=149.7

Q ss_pred             cccHHHHHh-cCChHHHHHhhccCCCccccCCCCCCcHHHHHHHc-----------------------CcCchHHHHHHh
Q psy17862         52 KRNILEAAE-HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN-----------------------DKNKRKILEAAE  107 (265)
Q Consensus        52 ~~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~-----------------------~~~~~~l~~a~~  107 (265)
                      .+++++|+. .++.+++++|++. |+++...+..|.||++.-+..                       ..+..++|.++.
T Consensus       106 ~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~  184 (631)
T PHA02792        106 NIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII  184 (631)
T ss_pred             CcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence            455566544 4666666666666 666666666666666554321                       114578999999


Q ss_pred             hC-------CHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcC--CHHHHHHHHHcCC----------------------
Q psy17862        108 HN-------DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG--HANIVELLIQWGA----------------------  156 (265)
Q Consensus       108 ~~-------~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~----------------------  156 (265)
                      .+       +.++++.|+. .|+.++..|..|.||||+|+.+.  ..+++++|+...-                      
T Consensus       185 ~~s~~~~~~~~~v~k~Li~-~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~  263 (631)
T PHA02792        185 TRSQDGYATSLDVINYLIS-HEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNH  263 (631)
T ss_pred             hCCcccccCCHHHHHHHHh-CCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCcc
Confidence            98       8999999998 57888888999999999999988  7788888876210                      


Q ss_pred             CCC----------------------------------------------------------------CC---CCCCChHH
Q psy17862        157 DTQ----------------------------------------------------------------KT---TIDGWTPL  169 (265)
Q Consensus       157 ~~~----------------------------------------------------------------~~---~~~g~t~l  169 (265)
                      +++                                                                ..   ...+..++
T Consensus       264 ~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~  343 (631)
T PHA02792        264 KIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKY  343 (631)
T ss_pred             CccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHH
Confidence            000                                                                00   00134557


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCccccCCCC--CcHHHHHHhCCCh--HHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCC
Q psy17862        170 HSACKWNNTECVIVLLNYGVDVNAQTNGG--LTPLHLAASHSHS--RDVLMILLSHPNVDPHILSTSNESAREIATRSGI  245 (265)
Q Consensus       170 ~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g--~tpL~~a~~~~~~--~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~  245 (265)
                      +.|+..++.+++++|+++|++++.+|..|  .||||+|+.....  ..++++|+++ |++++.+|..|.||||+|+..++
T Consensus       344 ~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~-GADIN~kD~~G~TPLh~Aa~~~n  422 (631)
T PHA02792        344 FQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY-IDDINKIDKHGRSILYYCIESHS  422 (631)
T ss_pred             HHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc-CCccccccccCcchHHHHHHcCC
Confidence            88888999999999999999999998875  6999998776543  2357778887 89999999999999999999998


Q ss_pred             chhhhhcchh
Q psy17862        246 HYGLFETIEP  255 (265)
Q Consensus       246 ~~~~~~ll~~  255 (265)
                      .+.+..|++.
T Consensus       423 ~eivelLLs~  432 (631)
T PHA02792        423 VSLVEWLIDN  432 (631)
T ss_pred             HHHHHHHHHC
Confidence            8888777765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.5e-22  Score=185.91  Aligned_cols=147  Identities=19%  Similarity=0.176  Sum_probs=135.2

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +..|+.+.++.|+. .|.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+
T Consensus       533 a~~g~~~~l~~Ll~-~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~  611 (823)
T PLN03192        533 ASTGNAALLEELLK-AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY  611 (823)
T ss_pred             HHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            77899999999998 68899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      ..++..+.  ..|.+|||+|+..|+. +++++|+++ |++++.+|.+|.||||+|+..|+.+.+..|++.-.
T Consensus       612 ~~~~~~~~--~~~~~~L~~Aa~~g~~-~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        612 HFASISDP--HAAGDLLCTAAKRNDL-TAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             hcCcccCc--ccCchHHHHHHHhCCH-HHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            88765543  4577999999999998 788888887 89999999999999999999999999999887543

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=5.5e-23  Score=154.20  Aligned_cols=130  Identities=26%  Similarity=0.276  Sum_probs=114.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCCccccC
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQ------WGADTQKTTIDGWTPLHSACKWNN----TECVIVLLNYGVDVNAQT  195 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~------~~~~~~~~~~~g~t~l~~a~~~~~----~~~v~~Ll~~g~~~~~~~  195 (265)
                      +.++..|.|+||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..++    .+++++|+..|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3467889999999999999999998864      357889999999999999999998    588999999999999988


Q ss_pred             C-CCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        196 N-GGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       196 ~-~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      . .|+||||+|+..++. +++++|+...+++++..|..|.|||++|+..|+...+..|++..
T Consensus        95 ~~~g~TpLh~A~~~~~~-~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         95 MLEGDTALHLAAHRRDH-DLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             cCCCCCHHHHHHHcCCH-HHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            5 899999999999998 78888887668999999999999999999999777777766654

>KOG0514|consensus

Probab=99.90  E-value=3e-23  Score=163.75  Aligned_cols=163  Identities=26%  Similarity=0.393  Sum_probs=139.6

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      +..|.|+||||+..+++++|+.||+.+-.+|+.+|.-|+||+|+|+-..        .-...+..+|..|+.- | ++|.
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~--------lk~~~d~~vV~~LF~m-g-nVNa  334 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAK--------LKQPADRTVVERLFKM-G-DVNA  334 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHh--------hcchhhHHHHHHHHhc-c-Ccch
Confidence            3457789999999999999999999988999999999999999995310        0123556778888874 3 4455


Q ss_pred             C-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCcHHHHH
Q psy17862        128 V-DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY-GVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       128 ~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~a  205 (265)
                      + ...|.|+|++|+.+|..++++.||..|+++|.+|.+|.|+|++|+++|+.+++++|+.. ++|+...|.+|.|+|.+|
T Consensus       335 KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  335 KASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             hhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence            4 35699999999999999999999999999999999999999999999999999999987 599999999999999999


Q ss_pred             HhCCChHHHHHHHhhC
Q psy17862        206 ASHSHSRDVLMILLSH  221 (265)
Q Consensus       206 ~~~~~~~~~~~~L~~~  221 (265)
                      ...|+. ++-.+|..+
T Consensus       415 leagh~-eIa~mlYa~  429 (452)
T KOG0514|consen  415 LEAGHR-EIAVMLYAH  429 (452)
T ss_pred             HhcCch-HHHHHHHHH
Confidence            999998 565555544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=150.30  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=118.7

Q ss_pred             CCCCcccHHHHHhcCChH----HHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHH---HHHHHHhc
Q psy17862         48 QDKNKRNILEAAEHNDSK----TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK---TLEALLDL  120 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~----~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~---~~~~ll~~  120 (265)
                      .+.+++++|+|++.|+.+    ++++|++. +..++..|..|+||||+|+             ..++.+   ++++|+. 
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa-------------~~g~~~~~~~i~~Ll~-   81 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVA-------------WYDRANAVMKIELLVN-   81 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHH-------------HhCccCHHHHHHHHHH-
Confidence            345678999999999985    44455554 7889999999999999995             455543   4778887 


Q ss_pred             CCCCcccCC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCC
Q psy17862        121 DSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQ-WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG  198 (265)
Q Consensus       121 ~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g  198 (265)
                      .|.+++.++ ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        82 ~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         82 MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            688999988 589999999999999999999995 799999999999999999999999999999999999999988777


Q ss_pred             Cc
Q psy17862        199 LT  200 (265)
Q Consensus       199 ~t  200 (265)
                      .+
T Consensus       162 ~~  163 (166)
T PHA02743        162 LS  163 (166)
T ss_pred             cc
Confidence            53

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=4.1e-22  Score=149.48  Aligned_cols=130  Identities=22%  Similarity=0.314  Sum_probs=115.9

Q ss_pred             cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhc-----CCCCcccCCCCCChHHHHHHHcCC----HHHH
Q psy17862         78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL-----DSTLVDAVDKDGYSPLHRACYNGH----ANIV  148 (265)
Q Consensus        78 ~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~-----~~~~~~~~~~~g~t~l~~a~~~~~----~~~~  148 (265)
                      ++.+|..|.||||+|             ++.|+.++++.|+..     .+..++.+|..|.||||+|+..|+    .+++
T Consensus        14 ~~~~~~~g~t~Lh~A-------------a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii   80 (169)
T PHA02741         14 IAEKNSEGENFFHEA-------------ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEII   80 (169)
T ss_pred             hhccccCCCCHHHHH-------------HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHH
Confidence            445678999999999             778999999988542     256788899999999999999998    5899


Q ss_pred             HHHHHcCCCCCCCCC-CCChHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        149 ELLIQWGADTQKTTI-DGWTPLHSACKWNNTECVIVLLN-YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       149 ~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      ++|++.|++++.++. .|.||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..++. +++++|++.
T Consensus        81 ~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~-~iv~~L~~~  154 (169)
T PHA02741         81 DHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV-AMMQILREI  154 (169)
T ss_pred             HHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH-HHHHHHHHH
Confidence            999999999999885 89999999999999999999997 5999999999999999999999987 788888875

>KOG0505|consensus

Probab=99.89  E-value=5.3e-23  Score=169.84  Aligned_cols=174  Identities=32%  Similarity=0.457  Sum_probs=149.1

Q ss_pred             ccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCC
Q psy17862         53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDG  132 (265)
Q Consensus        53 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  132 (265)
                      -.++.|+..|+.+.|..|+.. +...+..+.+|.|++|-+             +...+.++|++|++ .+..++..|..|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~-------------~id~~~e~v~~l~e-~ga~Vn~~d~e~  106 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQA-------------CIDDNLEMVKFLVE-NGANVNAQDNEG  106 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHH-------------HhcccHHHHHHHHH-hcCCcccccccc
Confidence            345678888888888888887 667788888888888888             66788888888888 678888888888


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------------------------
Q psy17862        133 YSPLHRACYNGHANIVELLIQWGADTQ-----------------------------------------------------  159 (265)
Q Consensus       133 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~-----------------------------------------------------  159 (265)
                      +||+|.|+..|+..++++|++.|+++-                                                     
T Consensus       107 wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~  186 (527)
T KOG0505|consen  107 WTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN  186 (527)
T ss_pred             CCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh
Confidence            889988888888888888888776432                                                     


Q ss_pred             ------CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCC
Q psy17862        160 ------KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSN  233 (265)
Q Consensus       160 ------~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g  233 (265)
                            ..+..|.|.||.|+..|..++.++|++.|.+++.+|.+||||||.|+.+|.. +++++|..+ |++.++.+..|
T Consensus       187 ~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~-~~~elL~~~-ga~~d~~t~~g  264 (527)
T KOG0505|consen  187 AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQE-DACELLVEH-GADMDAKTKMG  264 (527)
T ss_pred             ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhH-hHHHHHHHh-hcccchhhhcC
Confidence                  2222378999999999999999999999999999999999999999999987 788899888 89999999999


Q ss_pred             ccHHHHHhhc
Q psy17862        234 ESAREIATRS  243 (265)
Q Consensus       234 ~t~l~~a~~~  243 (265)
                      .||+++|...
T Consensus       265 ~~p~dv~dee  274 (527)
T KOG0505|consen  265 ETPLDVADEE  274 (527)
T ss_pred             CCCccchhhh
Confidence            9999999654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=5.1e-22  Score=181.22  Aligned_cols=175  Identities=24%  Similarity=0.255  Sum_probs=142.2

Q ss_pred             CCcccHHHHHhcCChHHHHHhhcc-CCCccccCCCCCCcHHH-HHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDH-DSTLVDAVDKDGYSPLH-RACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~tpl~-~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      .....++.|+..|+.+.|+.+++. .+.++|..|..|+|||| .|             +..++.++++.|+.. +.    
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A-------------~~~~~~eiv~lLl~~-g~----   77 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA-------------IENENLELTELLLNL-SC----   77 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHH-------------HhcChHHHHHHHHhC-CC----
Confidence            446789999999999999999976 25788999999999999 66             667888999988884 43    


Q ss_pred             CCCCCChHHHHHHHcC---CHHHHHHHHHcCCC------CC----CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCcccc
Q psy17862        128 VDKDGYSPLHRACYNG---HANIVELLIQWGAD------TQ----KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ  194 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~------~~----~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~  194 (265)
                      .+..|.||||.|+..+   ...++..+...+..      .+    .....|.||||+|+..++.+++++|+++|++++.+
T Consensus        78 ~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~  157 (743)
T TIGR00870        78 RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR  157 (743)
T ss_pred             CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC
Confidence            5778999999998732   22344444443321      11    12346999999999999999999999999999865


Q ss_pred             C--------------CCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        195 T--------------NGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       195 ~--------------~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      +              ..|.||||+|+..|+. +++++|+++ |+|++..|..|.||||+|+..+
T Consensus       158 ~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~-~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       158 ACGDFFVKSQGVDSFYHGESPLNAAACLGSP-SIVALLSED-PADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cCCchhhcCCCCCcccccccHHHHHHHhCCH-HHHHHHhcC-CcchhhHhhhhhHHHHHHHhhh
Confidence            3              2589999999999987 899999987 7899999999999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512|consensus

Probab=99.88  E-value=3e-21  Score=137.60  Aligned_cols=175  Identities=31%  Similarity=0.391  Sum_probs=144.7

Q ss_pred             eeeecccCcccccccCC-CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHh
Q psy17862         29 GQVSAWDDDVVGIEDSR-NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE  107 (265)
Q Consensus        29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~  107 (265)
                      .....|.......+... +........+.+|+..+....|+.||+.....||.+|.+|+||||-|             +.
T Consensus        40 mfvS~W~ddsdeleE~dk~me~dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRA-------------aY  106 (228)
T KOG0512|consen   40 MFVSLWVDDSEELEEQDKNMEKDPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRA-------------AY  106 (228)
T ss_pred             ceeeeecCCcHHHHhhccCcccCHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHH-------------Hh
Confidence            45667777666664333 23223345677999999999999999997778999999999999999             66


Q ss_pred             hCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH-HHHHH-
Q psy17862        108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC-VIVLL-  185 (265)
Q Consensus       108 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~-v~~Ll-  185 (265)
                      +|+.+++..|+. .|++.+.+...|+||||.||.-.+.+++.+|+++|+++|.......||||.|+...+... +.+|+ 
T Consensus       107 n~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  107 NGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             cCchHHHHHHHH-ccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence            899999999998 688999999999999999999999999999999999999999889999999998876554 55555 


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHH
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI  217 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~  217 (265)
                      ..++++..++..+.||+.+|-+.+-..-+.+.
T Consensus       186 dryi~pg~~nn~eeta~~iARRT~~s~~lfe~  217 (228)
T KOG0512|consen  186 DRYIHPGLKNNLEETAFDIARRTSMSHYLFEI  217 (228)
T ss_pred             ccccChhhhcCccchHHHHHHHhhhhHHHHHH
Confidence            44688989999999999999887544333333

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=5.7e-21  Score=153.55  Aligned_cols=156  Identities=21%  Similarity=0.258  Sum_probs=125.9

Q ss_pred             ccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC----CCCCChHHHHHHHcCCHHHHHHHHHc
Q psy17862         79 DAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV----DKDGYSPLHRACYNGHANIVELLIQW  154 (265)
Q Consensus        79 ~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~Ll~~  154 (265)
                      ..+|..|.|++++++            +..++.++++.|++ .|++++..    +..|.||||+|+..++.+++++|+++
T Consensus        26 ~~~d~~~~~~lL~~A------------~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~   92 (300)
T PHA02884         26 KKKNKICIANILYSS------------IKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY   92 (300)
T ss_pred             hccCcCCCCHHHHHH------------HHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            345777887655552            66789999999998 57888886    45899999999999999999999999


Q ss_pred             CCCCCCC-CCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCC
Q psy17862        155 GADTQKT-TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSN  233 (265)
Q Consensus       155 ~~~~~~~-~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g  233 (265)
                      |++++.+ +..|.||||+|+..++.+++++|+..|++++.+|..|.||||+|+..++. .+..++.   |.   ..+..+
T Consensus        93 GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~-~~~~~~~---~~---~~~~~~  165 (300)
T PHA02884         93 GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNN-FLAFMIC---DN---EISNFY  165 (300)
T ss_pred             CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCh-hHHHHhc---CC---cccccc
Confidence            9999986 46799999999999999999999999999999999999999999998776 4444443   32   246667


Q ss_pred             ccHHHHHhhcCCchhhhhcchhhh
Q psy17862        234 ESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       234 ~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      .+|++++.   +.+.++.|+....
T Consensus       166 ~~~~~~~~---n~ei~~~Lish~v  186 (300)
T PHA02884        166 KHPKKILI---NFDILKILVSHFI  186 (300)
T ss_pred             cChhhhhc---cHHHHHHHHHHHH
Confidence            78888752   3556665555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=9.3e-22  Score=145.52  Aligned_cols=135  Identities=26%  Similarity=0.330  Sum_probs=103.5

Q ss_pred             cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHh----cCCCCcccCCCCCChHHHHHHHcCCH---HHHHH
Q psy17862         78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLD----LDSTLVDAVDKDGYSPLHRACYNGHA---NIVEL  150 (265)
Q Consensus        78 ~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~  150 (265)
                      .+..|..|.||||+|+.             .|+...+..+..    ..+......|..|.||||+|+..|+.   +++++
T Consensus        10 ~~~~d~~g~tpLh~A~~-------------~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~   76 (154)
T PHA02736         10 ASEPDIEGENILHYLCR-------------NGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL   76 (154)
T ss_pred             HHhcCCCCCCHHHHHHH-------------hCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHH
Confidence            45567889999999954             555322211111    01112334678899999999999876   46889


Q ss_pred             HHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCc
Q psy17862        151 LIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLN-YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPH  227 (265)
Q Consensus       151 Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~  227 (265)
                      |++.|++++.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..|+. .++++|+.. |++++
T Consensus        77 Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~-~i~~~Ll~~-ga~~~  153 (154)
T PHA02736         77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA-KMMNILRAK-GAQCK  153 (154)
T ss_pred             HHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCC
Confidence            999999999887 489999999999999999999997 4899999999999999999999887 677888776 66654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=144.26  Aligned_cols=129  Identities=23%  Similarity=0.269  Sum_probs=106.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHcCC--C-----CCCCCCCCChHHHHHHhcCCH---HHHHHHHhcCCCcccc
Q psy17862        125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGA--D-----TQKTTIDGWTPLHSACKWNNT---ECVIVLLNYGVDVNAQ  194 (265)
Q Consensus       125 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~--~-----~~~~~~~g~t~l~~a~~~~~~---~~v~~Ll~~g~~~~~~  194 (265)
                      .+..|..|.||||+|++.|+.  +.++...+.  +     ++.+|..|.||||+|+..+..   +++++|++.|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            345678899999999999984  333333322  1     234688999999999999986   4689999999999999


Q ss_pred             C-CCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        195 T-NGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       195 ~-~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      + ..|.||||+|+..|+. +++++|+.+.+++++..|..|.||||+|+..|+...+..|+..-
T Consensus        88 ~~~~g~T~Lh~A~~~~~~-~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNY-ELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCCCcHHHHHHHhCCH-HHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            8 4899999999999998 78888887668999999999999999999999888887776643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.7e-20  Score=149.70  Aligned_cols=148  Identities=20%  Similarity=0.236  Sum_probs=125.1

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCC----CCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD----KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d----~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      ...++|+.|++.|+.+++++|++. |++++.++    ..|.||||+|             +..++.++++.|++ .|+++
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~A-------------a~~~~~eivklLL~-~GADV   96 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYA-------------IDCDNDDAAKLLIR-YGADV   96 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCc
Confidence            334567788888999999999998 89999874    5899999999             67899999999998 68899


Q ss_pred             ccC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy17862        126 DAV-DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL  204 (265)
Q Consensus       126 ~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  204 (265)
                      +.. +..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++..++..+.  |..   .+..+.+|+++
T Consensus        97 N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~  171 (300)
T PHA02884         97 NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKI  171 (300)
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhh
Confidence            986 467999999999999999999999999999999999999999999998888876554  332   35667788887


Q ss_pred             HHhCCChHHHHHHHhhC
Q psy17862        205 AASHSHSRDVLMILLSH  221 (265)
Q Consensus       205 a~~~~~~~~~~~~L~~~  221 (265)
                      +.   +. +++++|.++
T Consensus       172 ~~---n~-ei~~~Lish  184 (300)
T PHA02884        172 LI---NF-DILKILVSH  184 (300)
T ss_pred             hc---cH-HHHHHHHHH
Confidence            53   33 677787776

>KOG0507|consensus

Probab=99.85  E-value=8.5e-21  Score=162.43  Aligned_cols=191  Identities=26%  Similarity=0.282  Sum_probs=163.6

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      .+.|.||+|+..|+..+++.|++. .+.++..|..|.+|||+|             +-.|+.++++.++.+ +...+...
T Consensus        48 ~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg~~plhla-------------aw~g~~e~vkmll~q-~d~~na~~  112 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKGILPLHLA-------------AWNGNLEIVKMLLLQ-TDILNAVN  112 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccCcceEEeh-------------hhcCcchHHHHHHhc-ccCCCccc
Confidence            567999999999999999999998 667888889999999999             668889999999986 46778888


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCC--------ccccCCCCCcH
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD--------VNAQTNGGLTP  201 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~--------~~~~~~~g~tp  201 (265)
                      -.|.||||.|+.+|+.+++.+|+.+|+++-..+..+.|++-.|++.|..++++.|++...+        ...++..+-+|
T Consensus       113 ~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~p  192 (854)
T KOG0507|consen  113 IENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYP  192 (854)
T ss_pred             ccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCC
Confidence            8999999999999999999999999999999999999999999999999999988876221        22345567789


Q ss_pred             HHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhh
Q psy17862        202 LHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       202 L~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      ||.|+.+|+. +++..|+.. |++++....+ -|+||.|+.+|..++|+.++..-.+
T Consensus       193 lHlaakngh~-~~~~~ll~a-g~din~~t~~-gtalheaalcgk~evvr~ll~~gin  246 (854)
T KOG0507|consen  193 LHLAAKNGHV-ECMQALLEA-GFDINYTTED-GTALHEAALCGKAEVVRFLLEIGIN  246 (854)
T ss_pred             cchhhhcchH-HHHHHHHhc-CCCccccccc-chhhhhHhhcCcchhhhHHHhhccc
Confidence            9999999998 677788776 8998887766 4899999999999999888876443

>KOG3676|consensus

Probab=99.85  E-value=1.2e-20  Score=163.04  Aligned_cols=201  Identities=25%  Similarity=0.295  Sum_probs=163.9

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccC--------CCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHD--------STLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD  121 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~--------~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  121 (265)
                      .++.++..|...+....+..++...        ..+++.+...|.|+||.|.-+.          ..++.++++.|++..
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~----------~~~~n~la~~LL~~~  169 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNL----------SDGHNELARVLLEIF  169 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcC----------chhHHHHHHHHHHHh
Confidence            3447788888888888887777653        2467777888999999997653          367778888888755


Q ss_pred             CCCccc----CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC---------C--------------CCCChHHHHHHh
Q psy17862        122 STLVDA----VDKDGYSPLHRACYNGHANIVELLIQWGADTQKT---------T--------------IDGWTPLHSACK  174 (265)
Q Consensus       122 ~~~~~~----~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~---------~--------------~~g~t~l~~a~~  174 (265)
                      +-.++.    ..-.|.||||+|+.+.+.++|+.|++.|++++.+         |              -.|..||..|+.
T Consensus       170 p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC  249 (782)
T KOG3676|consen  170 PKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAAC  249 (782)
T ss_pred             HHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHH
Confidence            433333    2346999999999999999999999999998631         1              137789999999


Q ss_pred             cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCC--CcccCCCCccHHHHHhhcCCchhhhhc
Q psy17862        175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD--PHILSTSNESAREIATRSGIHYGLFET  252 (265)
Q Consensus       175 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~l  252 (265)
                      .++.+|+++|+++|+|++.+|..|+|.||.++.+-.. ++..+++++ |++  ..++|.+|.|||.+|++.|+...++.+
T Consensus       250 ~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~-~My~~~L~~-ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  250 TNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVT-EMYDLALEL-GANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             cCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHH-HHHHHHHhc-CCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999998544 677777777 778  899999999999999999999999999


Q ss_pred             chh-hhhccCC
Q psy17862        253 IEP-CFNNLSM  262 (265)
Q Consensus       253 l~~-~~~~~~~  262 (265)
                      |+. .+..-+.
T Consensus       328 le~~k~~~W~Y  338 (782)
T KOG3676|consen  328 LERRKFTDWAY  338 (782)
T ss_pred             HHhhcccceee
Confidence            988 5444333

>KOG0195|consensus

Probab=99.83  E-value=5.4e-21  Score=147.00  Aligned_cols=147  Identities=29%  Similarity=0.357  Sum_probs=125.6

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      |+.|+.-.++.-++....+.|..|..|.+|||||++.|+..+++.|+.+|+.+|..+....||||+|+..|+.++|..|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            45566555665566566788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +..+|+|..+..|.||||||+-+|.. .+.+-|+.. |+-+++.|++|+||++.|.-.- ...+.++.++
T Consensus        88 ~~kadvnavnehgntplhyacfwgyd-qiaedli~~-ga~v~icnk~g~tpldkakp~l-~~~l~e~aek  154 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWGYD-QIAEDLISC-GAAVNICNKKGMTPLDKAKPML-KNTLLEIAEK  154 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhcHH-HHHHHHHhc-cceeeecccCCCCchhhhchHH-HHHHHHHHHH
Confidence            99999999999999999999999875 777888775 8999999999999999884332 3334444433

>KOG0507|consensus

Probab=99.82  E-value=4.2e-20  Score=158.24  Aligned_cols=188  Identities=26%  Similarity=0.344  Sum_probs=163.7

Q ss_pred             ccHHHHHhcCChHHHHHhhccC------------CCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhc
Q psy17862         53 RNILEAAEHNDSKTLEALLDHD------------STLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL  120 (265)
Q Consensus        53 ~~l~~A~~~g~~~~v~~ll~~~------------~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~  120 (265)
                      +-+..|++.|+.+.+..||+..            ...+|..|.+|+|.||.|             +..|+.++++.|++ 
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha-------------~Lng~~~is~llle-   70 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHA-------------VLNGQNQISKLLLD-   70 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHH-------------HhcCchHHHHHHhc-
Confidence            3467899999999999999853            235778889999999999             66899999999998 


Q ss_pred             CCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCc
Q psy17862        121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT  200 (265)
Q Consensus       121 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  200 (265)
                      ....++..+..|.+|||+|+..|+.+++++++..+..+|..+..|.||||.|++.++.+++.+|+++|+++..+|..+.|
T Consensus        71 ~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t  150 (854)
T KOG0507|consen   71 YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKET  150 (854)
T ss_pred             chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCccccc
Confidence            56678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHhhCCCCC--------CcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        201 PLHLAASHSHSRDVLMILLSHPNVD--------PHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       201 pL~~a~~~~~~~~~~~~L~~~~~~~--------~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      +|..|++.|.. .++..|++. ...        -..++-.+-+|+|.|+++|+.+++..++.--
T Consensus       151 ~ldlA~qfgr~-~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag  212 (854)
T KOG0507|consen  151 VLDLASRFGRA-EVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG  212 (854)
T ss_pred             HHHHHHHhhhh-HHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC
Confidence            99999999998 566666654 222        1344567789999999999999988887653

>KOG0195|consensus

Probab=99.82  E-value=4.8e-20  Score=141.83  Aligned_cols=138  Identities=31%  Similarity=0.480  Sum_probs=126.7

Q ss_pred             HHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCCh
Q psy17862         55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYS  134 (265)
Q Consensus        55 l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t  134 (265)
                      ++.-++.|+--.|+..|+....++|.-|..|.+|||||             ++.|+..+++.|+. .|..+|..+....|
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhgfsplhwa-------------akegh~aivemll~-rgarvn~tnmgddt   69 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWA-------------AKEGHVAIVEMLLS-RGARVNSTNMGDDT   69 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccCcchhhhh-------------hhcccHHHHHHHHh-cccccccccCCCCc
Confidence            44556777777778888887889999999999999999             67899999999998 68899999888899


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        135 PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       135 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      |||+|+.+|+.++++.|+++.+++|..+..|+||||+||..|.-.+++-|+..|+.+++.+++|.|||..|-
T Consensus        70 plhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   70 PLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             chhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=1.4e-18  Score=116.31  Aligned_cols=89  Identities=39%  Similarity=0.570  Sum_probs=65.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHH
Q psy17862        136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL  215 (265)
Q Consensus       136 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~  215 (265)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..++.+++++|++.|++++.++..|+||||+|+.+|+. +++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNL-EIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH-HHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCH-HHH
Confidence            5777777777777777777766655    67777777777777777777777777777777777888777777776 677


Q ss_pred             HHHhhCCCCCCcccC
Q psy17862        216 MILLSHPNVDPHILS  230 (265)
Q Consensus       216 ~~L~~~~~~~~~~~~  230 (265)
                      ++|+++ |++++.+|
T Consensus        76 ~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHT-TT-TTSS-
T ss_pred             HHHHHc-CCCCCCcC
Confidence            777776 77776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505|consensus

Probab=99.79  E-value=3e-19  Score=147.85  Aligned_cols=161  Identities=28%  Similarity=0.458  Sum_probs=131.4

Q ss_pred             CCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCch------------------------
Q psy17862         45 RNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKR------------------------  100 (265)
Q Consensus        45 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~------------------------  100 (265)
                      ...+..+.|+||.++...+.++|+++++. +.+||..|..|+||+|.|+..++-..                        
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl  145 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDL  145 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccc
Confidence            45556678999999999999999999999 89999999999999999976544100                        


Q ss_pred             --------HH----------HHHHhhCC-H---HHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy17862        101 --------KI----------LEAAEHND-S---KTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT  158 (265)
Q Consensus       101 --------~l----------~~a~~~~~-~---~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  158 (265)
                              .+          +.+++.-. .   .-+...+. .|...+..+..|.|.||.|+..|..+++++|++.|.++
T Consensus       146 ~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~  224 (527)
T KOG0505|consen  146 AEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV  224 (527)
T ss_pred             ccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence                    00          11111110 0   11222222 46667777777999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       159 ~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      +.+|.+|+||||.|+.++..+++++|+++|++++.....|.||+.+|..
T Consensus       225 ~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  225 NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            9999999999999999999999999999999999999999999999866

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.6e-17  Score=118.02  Aligned_cols=124  Identities=40%  Similarity=0.556  Sum_probs=111.8

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      .+..|.||||+|+..++.+++++|++.+...+..+..|.+|+|.|+..+..+++++|+..|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999888889999999999999999999999999999888889999999999999


Q ss_pred             CCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcc
Q psy17862        208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETI  253 (265)
Q Consensus       208 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  253 (265)
                      .++. +++++|+.. +.+.+..+..|.||+++|...++.+.+..|+
T Consensus        83 ~~~~-~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNL-DVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcH-HHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9986 788888887 6788889999999999999998777666553

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=2.7e-17  Score=116.84  Aligned_cols=124  Identities=46%  Similarity=0.668  Sum_probs=112.2

Q ss_pred             cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy17862         80 AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ  159 (265)
Q Consensus        80 ~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  159 (265)
                      ..|..|.||||+|             +..++.+++++|+.. +...+..+..|.+|+|.|+..+..+++++|++.++.++
T Consensus         2 ~~~~~g~t~l~~a-------------~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~   67 (126)
T cd00204           2 ARDEDGRTPLHLA-------------ASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN   67 (126)
T ss_pred             CcCcCCCCHHHHH-------------HHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            3567899999999             678999999999984 55557788899999999999999999999999999888


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHH
Q psy17862        160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL  218 (265)
Q Consensus       160 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L  218 (265)
                      ..+..|.||+|+|+..++.+++++|+..|.+.+..+..|.||+++|...+.. .++++|
T Consensus        68 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~L  125 (126)
T cd00204          68 ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL-EVVKLL  125 (126)
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCH-HHHHHh
Confidence            8889999999999999999999999999999999999999999999999877 676665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=1.2e-17  Score=111.73  Aligned_cols=88  Identities=36%  Similarity=0.482  Sum_probs=78.2

Q ss_pred             HHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q psy17862        103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI  182 (265)
Q Consensus       103 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~  182 (265)
                      +.|+..++.+++++|+. .+..++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++
T Consensus         2 ~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            44588999999999999 5555554    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccC
Q psy17862        183 VLLNYGVDVNAQT  195 (265)
Q Consensus       183 ~Ll~~g~~~~~~~  195 (265)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214|consensus

Probab=99.68  E-value=2.6e-16  Score=100.63  Aligned_cols=102  Identities=24%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHH
Q psy17862        136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL  215 (265)
Q Consensus       136 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~  215 (265)
                      +.|++.+|.++-++-.+..|.++|..- .|++|||+|+-+|+.++++||+..|++++.+|+.|-|||..|++-||. ..+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~-~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR-DCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH-HHH
Confidence            456666666666666666665555433 566666666666666666666666666666666666666666666665 566


Q ss_pred             HHHhhCCCCCCcccCCCCccHHHHH
Q psy17862        216 MILLSHPNVDPHILSTSNESAREIA  240 (265)
Q Consensus       216 ~~L~~~~~~~~~~~~~~g~t~l~~a  240 (265)
                      ++|++. |++..+...+|.+.+..+
T Consensus        84 klLL~~-GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQN-GADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHc-CcccceeCCCchhHHhhc
Confidence            666665 666666666666655544

>KOG4369|consensus

Probab=99.67  E-value=1.2e-16  Score=142.16  Aligned_cols=194  Identities=26%  Similarity=0.363  Sum_probs=135.1

Q ss_pred             CCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC
Q psy17862         45 RNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL  124 (265)
Q Consensus        45 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  124 (265)
                      ........++|-.|++.|+.|.|.+|+.+ |+++..+|+.|.+||.+|             +..||...|+.|+.. .++
T Consensus       751 ~~Te~n~~t~LT~acaggh~e~vellv~r-ganiehrdkkgf~plIma-------------atagh~tvV~~llk~-ha~  815 (2131)
T KOG4369|consen  751 PLTEPNIKTNLTSACAGGHREEVELLVVR-GANIEHRDKKGFVPLIMA-------------ATAGHITVVQDLLKA-HAD  815 (2131)
T ss_pred             cccCccccccccccccCccHHHHHHHHHh-cccccccccccchhhhhh-------------cccCchHHHHHHHhh-hhh
Confidence            33344456889999999999999999998 899999999999999999             556777777777764 334


Q ss_pred             ccc-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC--CCCCcH
Q psy17862        125 VDA-VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT--NGGLTP  201 (265)
Q Consensus       125 ~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~--~~g~tp  201 (265)
                      ++. .|+.+.|+|.+||..|..+++.+|+..|++-..++....|||.+|...+..++++.|+..|+.++.+.  +.|-+|
T Consensus       816 veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisP  895 (2131)
T KOG4369|consen  816 VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISP  895 (2131)
T ss_pred             hhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcch
Confidence            433 56667777777777777777777777777766677777777777777777777777777776666543  456677


Q ss_pred             HHHHHhCCChHHHHHHHhhCCCCCCcccC-CCCccHHHHHhhcCCchhhhhcchh
Q psy17862        202 LHLAASHSHSRDVLMILLSHPNVDPHILS-TSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       202 L~~a~~~~~~~~~~~~L~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      |+.|..+|+. ...+.|++. |-|+|..- .+-+|+|-+|+-.|..+.++.||..
T Consensus       896 Lmlatmngh~-~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~  948 (2131)
T KOG4369|consen  896 LMLATMNGHQ-AATLSLLQP-GSDINAQIETNRNTALTLALFQGRPEVVFLLLAA  948 (2131)
T ss_pred             hhhhhhcccc-HHHHHHhcc-cchhccccccccccceeeccccCcchHHHHHHHH
Confidence            7777777776 344444443 44544422 2335666666666655555555544

>KOG4369|consensus

Probab=99.65  E-value=6.5e-17  Score=143.77  Aligned_cols=149  Identities=26%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             HHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCChHHHHHHhcCCHHHH
Q psy17862        104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT--TIDGWTPLHSACKWNNTECV  181 (265)
Q Consensus       104 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~g~t~l~~a~~~~~~~~v  181 (265)
                      +|+-.|..+.+..||. .......+.+.|.|||.-++..|.+++-++|+..|++.|..  -..-.|+|.+++..|+...+
T Consensus       932 la~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv 1010 (2131)
T KOG4369|consen  932 LALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFV 1010 (2131)
T ss_pred             eccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhh
Confidence            3334444444444443 22233333334444444444444444444444444443321  11122344444444444444


Q ss_pred             HHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       182 ~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ..|+...+.+.+++++|.|+|..|+.-|+. ..+.+|.++ ++|++..|..-.|+++.|.+.|+..+|++++..
T Consensus      1011 ~~lln~~atv~v~NkkG~T~Lwla~~Gg~l-ss~~il~~~-~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1011 PKLLNGDATVRVPNKKGCTVLWLASAGGAL-SSCPILVSS-VADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             HHhhCCccceecccCCCCcccchhccCCcc-ccchHHhhc-ccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            444444444566777788888877777776 667777776 778888888888888888888877777766543

>KOG3676|consensus

Probab=99.65  E-value=1.5e-15  Score=131.85  Aligned_cols=159  Identities=28%  Similarity=0.305  Sum_probs=134.0

Q ss_pred             CCCCcccHHHHHh---cCChHHHHHhhccCCCccccC----CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhc
Q psy17862         48 QDKNKRNILEAAE---HNDSKTLEALLDHDSTLVDAV----DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL  120 (265)
Q Consensus        48 ~~~~~~~l~~A~~---~g~~~~v~~ll~~~~~~~~~~----d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~  120 (265)
                      ...|.|.||.|.-   .+..++++.|++..+--+|..    ...|.||||+|             +.+.+.+.|..|+. 
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiA-------------Iv~~~~~~V~lLl~-  205 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIA-------------IVNRDAELVRLLLA-  205 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHH-------------HHhccHHHHHHHHH-
Confidence            3456788888776   455689999998766445443    25699999999             78899999999998 


Q ss_pred             CCCCcccC---------C--------------CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC
Q psy17862        121 DSTLVDAV---------D--------------KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN  177 (265)
Q Consensus       121 ~~~~~~~~---------~--------------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  177 (265)
                      .|++++++         |              -.|+.||.+|+--++.+++++|+++|++++.+|..|+|.||..+..-.
T Consensus       206 ~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~  285 (782)
T KOG3676|consen  206 AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFV  285 (782)
T ss_pred             cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHH
Confidence            46665531         1              147899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC--ccccCCCCCcHHHHHHhCCChHHHHHHHhh
Q psy17862        178 TECVIVLLNYGVD--VNAQTNGGLTPLHLAASHSHSRDVLMILLS  220 (265)
Q Consensus       178 ~~~v~~Ll~~g~~--~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~  220 (265)
                      .++.++++++|++  ...+|+.|-|||-.|+..|..+.+..+|..
T Consensus       286 ~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  286 TEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999  889999999999999999999666666655

>KOG4214|consensus

Probab=99.64  E-value=2.8e-15  Score=95.95  Aligned_cols=98  Identities=28%  Similarity=0.407  Sum_probs=87.6

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +.+|..+.++..+.. |.+++..- .|++|||+|+-.|+.+++.+|+..|++++.+|..|.|||..|++.|+.+||++|+
T Consensus        10 vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL   87 (117)
T KOG4214|consen   10 VKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLL   87 (117)
T ss_pred             hccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHH
Confidence            778999999998874 45555443 7899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHH
Q psy17862        186 NYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a  205 (265)
                      ++|++-..+..+|.+.+..+
T Consensus        88 ~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   88 QNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HcCcccceeCCCchhHHhhc
Confidence            99999998888888776544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=3.8e-14  Score=111.12  Aligned_cols=125  Identities=34%  Similarity=0.439  Sum_probs=80.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC-----HHHHHHHHhcCC---CccccCCCCC
Q psy17862        128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN-----TECVIVLLNYGV---DVNAQTNGGL  199 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~v~~Ll~~g~---~~~~~~~~g~  199 (265)
                      .+..+.++++.++..+..+++++++..|++++.++..|.||+|+|+..++     .+++++|+..|+   ..+.++..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            44455666666666666666666666666666666666666666666666     666666666666   4444466666


Q ss_pred             cHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        200 TPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       200 tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      ||||+|+..|+. .++.+|+.. +.+++..+..|.|+++.|+..++...+..++.
T Consensus       149 tpl~~A~~~~~~-~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         149 TPLHWAALNGDA-DIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             chhHHHHHcCch-HHHHHHHhc-CCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            666666666665 555555554 56666666666666666666665555555544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=2.2e-14  Score=112.47  Aligned_cols=130  Identities=37%  Similarity=0.511  Sum_probs=108.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCC-----HHHHHHH
Q psy17862         77 LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH-----ANIVELL  151 (265)
Q Consensus        77 ~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~L  151 (265)
                      .....+..+.++++.+             +..+....+..++. .+.+++..+..|.||||+|+..++     .+++++|
T Consensus        65 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~l  130 (235)
T COG0666          65 HLAARDLDGRLPLHSA-------------ASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL  130 (235)
T ss_pred             ccccCCccccCHHHHH-------------HHcCcHHHHHHHHH-cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHH
Confidence            3445566688888888             55777888877777 567778889999999999999998     8999999


Q ss_pred             HHcCC---CCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        152 IQWGA---DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       152 l~~~~---~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      ++.|+   ..+..+..|.||||+|+..++.+++.+|+..|++++.++..|.|++++|+..++. .++..+...
T Consensus       131 l~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~l~~~  202 (235)
T COG0666         131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRI-ELVKLLLDK  202 (235)
T ss_pred             HHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchH-HHHHHHHhc
Confidence            99998   5666688999999999999999999999999999999999999999999999887 677777664

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.56  E-value=3.9e-14  Score=127.22  Aligned_cols=102  Identities=30%  Similarity=0.424  Sum_probs=56.5

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHH
Q psy17862        136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL  215 (265)
Q Consensus       136 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~  215 (265)
                      |+.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+. +++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~-~iv  164 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR-EVV  164 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH-HHH
Confidence            4555555555555555555555555555555555555555555555555555555555555555555555555554 444


Q ss_pred             HHHhhC------CCCCCcccCCCCccHHH
Q psy17862        216 MILLSH------PNVDPHILSTSNESARE  238 (265)
Q Consensus       216 ~~L~~~------~~~~~~~~~~~g~t~l~  238 (265)
                      ++|+.+      .+++++..+..|.+|+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccc
Confidence            555443      23444444444544444

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=7.2e-15  Score=88.70  Aligned_cols=50  Identities=44%  Similarity=0.630  Sum_probs=16.6

Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy17862        156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       156 ~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a  205 (265)
                      ++++..|..|.||||+|+.+++.+++++|++.|++++.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            44444444444444444444444444444444444444444444444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=1.5e-14  Score=87.29  Aligned_cols=55  Identities=42%  Similarity=0.580  Sum_probs=31.0

Q ss_pred             HHhcC-CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHH
Q psy17862        184 LLNYG-VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIA  240 (265)
Q Consensus       184 Ll~~g-~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a  240 (265)
                      |+++| ++++.+|..|.||||+|+.+|+. +++++|+.. +++++++|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~-~~v~~Ll~~-g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHS-EVVRLLLQN-GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-H-HHHHHHHHC-T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcH-HHHHHHHHC-cCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999998 677777765 999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=3.1e-13  Score=121.47  Aligned_cols=105  Identities=30%  Similarity=0.425  Sum_probs=95.9

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy17862        101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC  180 (265)
Q Consensus       101 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  180 (265)
                      .++.|+..|+.+.++.|+. .|.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            4666688999999999998 678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-------CCCccccCCCCCcHHHHHH
Q psy17862        181 VIVLLNY-------GVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       181 v~~Ll~~-------g~~~~~~~~~g~tpL~~a~  206 (265)
                      +++|+.+       |++.+..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       8888888888887766543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=1.1e-13  Score=83.00  Aligned_cols=52  Identities=44%  Similarity=0.624  Sum_probs=23.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q psy17862        133 YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL  184 (265)
Q Consensus       133 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~L  184 (265)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4455555555555555555555555554455555555555555555555444

...

>KOG1710|consensus

Probab=99.48  E-value=3.4e-13  Score=104.19  Aligned_cols=119  Identities=32%  Similarity=0.417  Sum_probs=62.1

Q ss_pred             chHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHhcCC
Q psy17862         99 KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT-TIDGWTPLHSACKWNN  177 (265)
Q Consensus        99 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~  177 (265)
                      ..+++.++.+++.+....|+.. --.++..|..|+++|..|+..|+.+++++|++.|+++|.. +..+.||||.|+.+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            3455555555555555555542 1124445555555555555555555555555555555532 2344555555555555


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHh
Q psy17862        178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL  219 (265)
Q Consensus       178 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~  219 (265)
                      .++..+|++.|+.+...|.-|+|+-.+|+--|+. +.+..+-
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H-~CV~iIN  132 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHH-ECVAIIN  132 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcch-HHHHHHh
Confidence            5555555555555555555555555555555554 3344333

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.8e-13  Score=82.08  Aligned_cols=54  Identities=48%  Similarity=0.687  Sum_probs=40.4

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHh
Q psy17862        165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL  219 (265)
Q Consensus       165 g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~  219 (265)
                      |.||+|+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~-~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNI-DIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-H-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCH-HHHHHHC
Confidence            67888888888889999888888888888888888999998888887 6666664

...

>KOG0515|consensus

Probab=99.44  E-value=4e-13  Score=111.62  Aligned_cols=101  Identities=29%  Similarity=0.325  Sum_probs=69.6

Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHH
Q psy17862        139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL  218 (265)
Q Consensus       139 a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L  218 (265)
                      |+..|-+++|+-.+..--++...+..|.|+||-|+..|+.+||+||++.|+++|..|.+||||||+|+..++. .+++.|
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv-~~ckqL  635 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV-PMCKQL  635 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch-HHHHHH
Confidence            5566777777777766666667777777777777777777777777777777777777777777777777766 566666


Q ss_pred             hhCCCCCCcccCCCCccHHHHH
Q psy17862        219 LSHPNVDPHILSTSNESAREIA  240 (265)
Q Consensus       219 ~~~~~~~~~~~~~~g~t~l~~a  240 (265)
                      .+++++-+-.+-.++.||.+-+
T Consensus       636 Ve~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  636 VESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HhccceEEeeecccccchhhhc
Confidence            6664444444556666766533

>KOG1710|consensus

Probab=99.44  E-value=1.2e-12  Score=101.25  Aligned_cols=121  Identities=29%  Similarity=0.348  Sum_probs=108.1

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc-C
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA-V  128 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~  128 (265)
                      ....+|+.++..|+.+....||+. .-.+|.+|..|.|||..|             +..|+.+.++.|++ .|+++|. .
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahA-------------aykGnl~~v~lll~-~gaDvN~~q   75 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHA-------------AYKGNLTLVELLLE-LGADVNDKQ   75 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHH-------------HhcCcHHHHHHHHH-hCCCcCccc
Confidence            446889999999999999999987 556999999999999999             77999999999999 4667665 5


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +..+.|||++|+.+|+.++.++|++.|+.+...+.-|+|+-..|+.-|+.+||..+-
T Consensus        76 hg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   76 HGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            677999999999999999999999999999999999999999999999988876543

>KOG0515|consensus

Probab=99.37  E-value=2e-12  Score=107.58  Aligned_cols=104  Identities=31%  Similarity=0.445  Sum_probs=90.3

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy17862        101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC  180 (265)
Q Consensus       101 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  180 (265)
                      .|..|+..|.++.|+..+.+ -.+....+..|.|+||-|+..||.+||+||++.|+++|..|.+|+||||+|+.+++..+
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            44567889999999999884 45677788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccC-CCCCcHHHHH
Q psy17862        181 VIVLLNYGVDVNAQT-NGGLTPLHLA  205 (265)
Q Consensus       181 v~~Ll~~g~~~~~~~-~~g~tpL~~a  205 (265)
                      ++.|++.|+.+-... .++.|+..-|
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhc
Confidence            999999998775533 3466776554

>KOG0783|consensus

Probab=99.07  E-value=8e-11  Score=102.98  Aligned_cols=94  Identities=27%  Similarity=0.463  Sum_probs=70.9

Q ss_pred             HHHHHhc-CCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCCc
Q psy17862        114 LEALLDL-DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLNYGVDV  191 (265)
Q Consensus       114 ~~~ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~  191 (265)
                      ++-++.. ++...+.+|..|+|+||.++..+..+++++|+++|+++..+| ..|+||||-|+.+|+.+|+-+|+.+|+.+
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            4444432 233356677888888888888888888888888888887776 56788888888888888888888888888


Q ss_pred             cccCCCCCcHHHHHHh
Q psy17862        192 NAQTNGGLTPLHLAAS  207 (265)
Q Consensus       192 ~~~~~~g~tpL~~a~~  207 (265)
                      .++|++|.+||...++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            8888888888877766

>KOG0783|consensus

Probab=99.06  E-value=1.6e-10  Score=101.20  Aligned_cols=84  Identities=29%  Similarity=0.273  Sum_probs=76.8

Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCC-CCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccH
Q psy17862        158 TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG-GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA  236 (265)
Q Consensus       158 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~  236 (265)
                      .|++|..|+|+||+++..+..++++||+++|+++..+|+. |+||||.|+.+|++ +..-+|+++ |+...+.|++|.+|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~i-dca~lLL~~-g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNI-DCASLLLSK-GRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchH-HHHHHHHhc-CCceEEecccCCCH
Confidence            6788999999999999999999999999999999999975 99999999999999 666777777 89999999999999


Q ss_pred             HHHHhhc
Q psy17862        237 REIATRS  243 (265)
Q Consensus       237 l~~a~~~  243 (265)
                      |+..++.
T Consensus       123 lq~~~r~  129 (1267)
T KOG0783|consen  123 LQFLSRV  129 (1267)
T ss_pred             HHHHhhc
Confidence            9999884

>KOG0818|consensus

Probab=98.91  E-value=4.9e-09  Score=87.02  Aligned_cols=95  Identities=27%  Similarity=0.262  Sum_probs=64.6

Q ss_pred             CCCCCCCCChH------HHHHHhcCCHHHHHHHHhcCCCccccCC-CCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccC
Q psy17862        158 TQKTTIDGWTP------LHSACKWNNTECVIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSHPNVDPHILS  230 (265)
Q Consensus       158 ~~~~~~~g~t~------l~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~  230 (265)
                      +..+|.+|.+.      ||..++.++.+..--|+..|+++|..+. .|.||||+|++.|.. --+++|.-. |+|+...|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~-~Q~ElL~vY-GAD~~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQI-LQAELLAVY-GADPGAQD  197 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccch-hhhhHHhhc-cCCCCCCC
Confidence            34455555543      7777777777777777777777777664 477888888887776 445555554 77888888


Q ss_pred             CCCccHHHHHhhcCCchhhhhcch
Q psy17862        231 TSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       231 ~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      ..|+||+.+|-..||....--|++
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHHH
Confidence            888888888877776654444433

>KOG0506|consensus

Probab=98.89  E-value=1.9e-09  Score=89.06  Aligned_cols=91  Identities=25%  Similarity=0.252  Sum_probs=74.2

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD  131 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  131 (265)
                      ..++++|++.|++..++.+.-. +.|++.+|.+.+|+||+|             +..|+.+++++|++..+++++.+|++
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvA-------------AaEG~v~v~kfl~~~~kv~~~~kDRw  572 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVA-------------AAEGHVEVVKFLLNACKVDPDPKDRW  572 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheee-------------cccCceeHHHHHHHHHcCCCChhhcc
Confidence            3567788888888888888877 788888888888888888             66788888888888778888888888


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCC
Q psy17862        132 GYSPLHRACYNGHANIVELLIQWGA  156 (265)
Q Consensus       132 g~t~l~~a~~~~~~~~~~~Ll~~~~  156 (265)
                      |+|||--|...+|.+++++|-+...
T Consensus       573 ~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  573 GRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CCCcchHhHhcCcHHHHHHHHHHhc
Confidence            8888888888888888888877543

>KOG0782|consensus

Probab=98.81  E-value=2.9e-08  Score=84.00  Aligned_cols=119  Identities=24%  Similarity=0.260  Sum_probs=101.0

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHhcCCH
Q psy17862        101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD--TQKTTIDGWTPLHSACKWNNT  178 (265)
Q Consensus       101 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~g~t~l~~a~~~~~~  178 (265)
                      .+..|+..+++-.++.....+| .+-..+.+..+.||+|+..|+-+++++++++|+.  ++..+..|.|+||.|+..++.
T Consensus       869 eil~av~~~D~~klqE~h~~gg-~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGG-SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCC-ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            3566777888877777777555 4445677888999999999999999999999864  566788899999999999999


Q ss_pred             HHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        179 ECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       179 ~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      .+..+|++.|+.+...|..|.||-..|-+.|+. ++..+|...
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~-dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDP-DLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCc-hHHHHHhhh
Confidence            999999999999999999999999999999987 677777654

>KOG0818|consensus

Probab=98.80  E-value=3.3e-08  Score=82.25  Aligned_cols=78  Identities=31%  Similarity=0.401  Sum_probs=72.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChH
Q psy17862        135 PLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR  212 (265)
Q Consensus       135 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~  212 (265)
                      -||.+++.|+.+..-.|+.-|+++|..+ ..|.||||.|++.|+..-+++|+-+|+|+...|.+|.||+.+|-..||.+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            4899999999999999999999999876 67999999999999999999999999999999999999999999998863

>KOG0506|consensus

Probab=98.79  E-value=8.7e-09  Score=85.20  Aligned_cols=91  Identities=29%  Similarity=0.312  Sum_probs=79.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY-GVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      ..+...+.+|++.|++..++.+.-.|.+++.+|.+.+|+||.|+..|+.+++++|++. +++++.+|..|+|||.-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3455678899999999999988888999999999999999999999999999999876 588999999999999999999


Q ss_pred             CChHHHHHHHhhC
Q psy17862        209 SHSRDVLMILLSH  221 (265)
Q Consensus       209 ~~~~~~~~~L~~~  221 (265)
                      +|. +++++|.+.
T Consensus       584 ~h~-~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHK-EVVKLLEEA  595 (622)
T ss_pred             CcH-HHHHHHHHH
Confidence            887 788888764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=1.2e-08  Score=54.15  Aligned_cols=31  Identities=42%  Similarity=0.637  Sum_probs=17.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCccccC
Q psy17862        165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQT  195 (265)
Q Consensus       165 g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~  195 (265)
                      |.||||+|+.+++.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4555555555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.77  E-value=1.1e-08  Score=52.69  Aligned_cols=27  Identities=52%  Similarity=0.596  Sum_probs=12.4

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCc
Q psy17862        165 GWTPLHSACKWNNTECVIVLLNYGVDV  191 (265)
Q Consensus       165 g~t~l~~a~~~~~~~~v~~Ll~~g~~~  191 (265)
                      |+||||+|++.++.+++++|+++|+|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            344444444444444444444444443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.77  E-value=1.2e-08  Score=52.55  Aligned_cols=29  Identities=45%  Similarity=0.778  Sum_probs=27.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQ  159 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  159 (265)
                      +|+||||+|++.|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999887

>KOG0782|consensus

Probab=98.74  E-value=4.4e-08  Score=82.93  Aligned_cols=120  Identities=25%  Similarity=0.292  Sum_probs=106.4

Q ss_pred             cHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC-cccCCCCC
Q psy17862         54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL-VDAVDKDG  132 (265)
Q Consensus        54 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~g  132 (265)
                      .|..|+..+++-.++..-.. |-++-.++.+..+.||+|             +..|+-+++++++++.+.. ++..+..|
T Consensus       869 eil~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a-------------~~tg~~eivkyildh~p~elld~~de~g  934 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYA-------------AKTGNGEIVKYILDHGPSELLDMADETG  934 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHH-------------HhcCChHHHHHHHhcCCHHHHHHHhhhh
Confidence            36789999998888888877 556888899999999999             7789999999999976543 55678899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q psy17862        133 YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY  187 (265)
Q Consensus       133 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  187 (265)
                      .|+||.|+..++..+.++|++.|+.+...|..|.||-.-|-+.++.+++.||-.+
T Consensus       935 et~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  935 ETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999998755

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=3.6e-08  Score=52.27  Aligned_cols=32  Identities=47%  Similarity=0.803  Sum_probs=30.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTT  162 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  162 (265)
                      +|.||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            48999999999999999999999999998876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.59  E-value=1.8e-07  Score=78.68  Aligned_cols=82  Identities=33%  Similarity=0.494  Sum_probs=66.7

Q ss_pred             HhhCCHHHHHHHH-hcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q psy17862        106 AEHNDSKTLEALL-DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL  184 (265)
Q Consensus       106 ~~~~~~~~~~~ll-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~L  184 (265)
                      ....+.+.+..++ ..-...++.+|..|+||||+|+..|+.+.++.|+..|+++..+|..|++|||.|+.+|+.+++..+
T Consensus        28 ~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~v  107 (560)
T KOG0522|consen   28 VVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEV  107 (560)
T ss_pred             hhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHH
Confidence            4455555544433 334456778899999999999999999999999999999999999999999999999998887666


Q ss_pred             Hhc
Q psy17862        185 LNY  187 (265)
Q Consensus       185 l~~  187 (265)
                      +.+
T Consensus       108 lr~  110 (560)
T KOG0522|consen  108 LRH  110 (560)
T ss_pred             HHH
Confidence            543

>KOG3609|consensus

Probab=98.53  E-value=4.5e-07  Score=80.47  Aligned_cols=125  Identities=26%  Similarity=0.248  Sum_probs=100.5

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCC---CccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDS---TLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~---~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      .+......|+.+|+...|+..++...   .++|..|.-|+++++.|             +.+.+.++..+|++. +... 
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia-------------i~nenle~~eLLl~~-~~~~-   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA-------------IDNENLELQELLLDT-SSEE-   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc-------------cccccHHHHHHHhcC-cccc-
Confidence            34456778999999999999998643   46888999999999999             778999999999984 3222 


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQ----------KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT  195 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~----------~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~  195 (265)
                            ..+|.+|+..|..+++++++.+.....          ..-.-+.||+.+|+..++.||++.|+++|+++..+.
T Consensus        89 ------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   89 ------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             ------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence                  358999999999999999998743221          112346799999999999999999999998875543

>KOG0705|consensus

Probab=98.52  E-value=5.6e-07  Score=76.45  Aligned_cols=86  Identities=30%  Similarity=0.348  Sum_probs=55.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC----CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCC
Q psy17862        135 PLHRACYNGHANIVELLIQWGADTQ----KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH  210 (265)
Q Consensus       135 ~l~~a~~~~~~~~~~~Ll~~~~~~~----~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~  210 (265)
                      -|.-|+...+...+-+|+.+|....    ..+.+|+|+||+||+.+++.+.++|+=+|+|+..+|..|+|+|.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            4555666666666666776664321    223455677777777777777777777777777777777777777766666


Q ss_pred             hHHHHHHHhhC
Q psy17862        211 SRDVLMILLSH  221 (265)
Q Consensus       211 ~~~~~~~L~~~  221 (265)
                      . +++..|+.+
T Consensus       707 q-ec~d~llq~  716 (749)
T KOG0705|consen  707 Q-ECIDVLLQY  716 (749)
T ss_pred             H-HHHHHHHHc
Confidence            5 566666665

>KOG0522|consensus

Probab=98.51  E-value=4.1e-07  Score=76.59  Aligned_cols=87  Identities=29%  Similarity=0.404  Sum_probs=72.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCCh
Q psy17862        134 SPLHRACYNGHANIVELLIQ--WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS  211 (265)
Q Consensus       134 t~l~~a~~~~~~~~~~~Ll~--~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~  211 (265)
                      .|+|+++.....+-+..++.  .+..++..|.-|.||||.|+.-|+...++.|+..|+++..+|+.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            46899988887766555333  3456788899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhh
Q psy17862        212 RDVLMILLS  220 (265)
Q Consensus       212 ~~~~~~L~~  220 (265)
                      +.+..+|..
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            555555543

>KOG0705|consensus

Probab=98.49  E-value=4.6e-07  Score=76.96  Aligned_cols=91  Identities=27%  Similarity=0.350  Sum_probs=54.1

Q ss_pred             ccHHHHHhcCChHHHHHhhccCCCc--cc--cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         53 RNILEAAEHNDSKTLEALLDHDSTL--VD--AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        53 ~~l~~A~~~g~~~~v~~ll~~~~~~--~~--~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..|..|+...|...+..||.+ |..  +|  .-+.+|+|+||+|             ++.|+....+.|+- +|+++-.+
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa-------------~~~gnVvl~QLLiW-yg~dv~~r  690 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLA-------------ARKGNVVLAQLLIW-YGVDVMAR  690 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhh-------------hhhcchhHHHHHHH-hCccceec
Confidence            345556666666666666665 321  22  1234556666666             45666666666664 56666666


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADT  158 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  158 (265)
                      |..|+|+|+||-+.|..+++..|+++|+..
T Consensus       691 da~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  691 DAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            666666666666666666666666666543

>KOG0521|consensus

Probab=98.32  E-value=6e-07  Score=81.43  Aligned_cols=79  Identities=32%  Similarity=0.475  Sum_probs=53.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhc
Q psy17862        164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS  243 (265)
Q Consensus       164 ~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~  243 (265)
                      .|.|+||.|+.+++..++++|++.|++++..|..|+||+|.+...|+. ....+|++. ++++++.+.+|++|+++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~-~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHT-SIACLLLKR-GADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhccc-chhhhhccc-cccccccCccCcchhhHHhhh
Confidence            356777777777777777777777777777777777777777777666 455555553 677777777777777777555


Q ss_pred             C
Q psy17862        244 G  244 (265)
Q Consensus       244 ~  244 (265)
                      .
T Consensus       733 ~  733 (785)
T KOG0521|consen  733 A  733 (785)
T ss_pred             c
Confidence            3

>KOG0511|consensus

Probab=98.29  E-value=2.8e-06  Score=68.91  Aligned_cols=54  Identities=26%  Similarity=0.370  Sum_probs=27.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q psy17862        136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV  189 (265)
Q Consensus       136 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~  189 (265)
                      |..||+.|..+.++.|++.|.++|.+|....+||.+|+..|+..+|++|+++|+
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            444555555555555555555555555555555555555555555555555543

>KOG0521|consensus

Probab=98.27  E-value=9.9e-07  Score=80.07  Aligned_cols=82  Identities=38%  Similarity=0.454  Sum_probs=77.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      ..|.++||.|+..+..-+..+|++.|+++|..+..|.+|+|.+...|+...+..|+++|++.+..+..|.+|+.+|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998775


Q ss_pred             Ch
Q psy17862        210 HS  211 (265)
Q Consensus       210 ~~  211 (265)
                      +.
T Consensus       734 ~~  735 (785)
T KOG0521|consen  734 NA  735 (785)
T ss_pred             cc
Confidence            44

>KOG3609|consensus

Probab=98.23  E-value=6.9e-06  Score=73.20  Aligned_cols=119  Identities=25%  Similarity=0.241  Sum_probs=94.5

Q ss_pred             chHHHHHHhhCCHHHHHHHHhcCCC---CcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc
Q psy17862         99 KRKILEAAEHNDSKTLEALLDLDST---LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW  175 (265)
Q Consensus        99 ~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  175 (265)
                      ......|+..|+...++..++....   .+|..|.-|.++|+.|..+.+.++.++|++++...       ..+|-+|+..
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            3455666889999999999886544   46667888999999999999999999999986654       2488899999


Q ss_pred             CCHHHHHHHHhcCCCcc----------ccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCC
Q psy17862        176 NNTECVIVLLNYGVDVN----------AQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP  226 (265)
Q Consensus       176 ~~~~~v~~Ll~~g~~~~----------~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~  226 (265)
                      +..++|+.++.+.....          ..-.-+.|||..||..++. +++++|+.. |+++
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nny-Eil~~Ll~k-g~~i  157 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNF-EILQCLLTR-GHCI  157 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcch-HHHHHHHHc-CCCC
Confidence            99999999998743321          1223357999999999998 788888887 5654

>KOG2384|consensus

Probab=98.21  E-value=4.3e-06  Score=61.48  Aligned_cols=64  Identities=23%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q psy17862        124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWG-ADTQKTTIDGWTPLHSACKWNNTECVIVLLNY  187 (265)
Q Consensus       124 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  187 (265)
                      ++|.+|..|+|+++.|+..|+.+.+.+|+.+| +.+...+..+.+++.+|-+.|..+++..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            45555566666666666666666666666665 55555555566666666666666666555554

>KOG0520|consensus

Probab=98.01  E-value=7.5e-06  Score=74.49  Aligned_cols=124  Identities=23%  Similarity=0.342  Sum_probs=91.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHH-hcCCCccccCCCCCcHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQW-GADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGVDVNAQTNGGLTPLHL  204 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~g~tpL~~  204 (265)
                      ...-.|++.+|+++..+..-.++.+++. +-.....+..|...+|. |..+..+++-+++ -.|..++++|..|+|||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3455789999999999988888888886 55556667788888888 4555556655444 4578899999999999999


Q ss_pred             HHhCCChHHHHHHHhhCCCC------CCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        205 AASHSHSRDVLMILLSHPNV------DPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       205 a~~~~~~~~~~~~L~~~~~~------~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      |+..|+. .++..|... |.      |+...+..|.|+-.+|...|+ +.+..+|.
T Consensus       648 Aa~~G~e-~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la~s~g~-~gia~~ls  700 (975)
T KOG0520|consen  648 AAFRGRE-KLVASLIEL-GADPGAVTDPSPETPGGKTAADLARANGH-KGIAGYLS  700 (975)
T ss_pred             HhhcCHH-HHHHHHHHh-ccccccccCCCCCCCCCCchhhhhhcccc-cchHHHHh
Confidence            9999986 677776653 33      344445679999999999984 44444443

>KOG0511|consensus

Probab=97.96  E-value=3e-05  Score=63.04  Aligned_cols=54  Identities=31%  Similarity=0.445  Sum_probs=50.5

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK  160 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  160 (265)
                      |+.|+.+.++.|++ .|+++|..|....+||.+|+..||.+++++|+++|+-...
T Consensus        44 cR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   44 CRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             hhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            78999999999999 8999999999999999999999999999999999985543

>KOG2384|consensus

Probab=97.93  E-value=3.8e-05  Score=56.63  Aligned_cols=71  Identities=21%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             CCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy17862         75 STLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW  154 (265)
Q Consensus        75 ~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  154 (265)
                      +.++|.+|..|+||++.|             +..|+.+.+.+|+..+-+.+...|..+.+++.+|-..|..+.++.|.+.
T Consensus         2 e~~in~rD~fgWTalmca-------------a~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCA-------------AMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHH-------------hhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            357899999999999999             7789999999999965588889999999999999999999999999997


Q ss_pred             CCCC
Q psy17862        155 GADT  158 (265)
Q Consensus       155 ~~~~  158 (265)
                      -.+-
T Consensus        69 ~~et   72 (223)
T KOG2384|consen   69 DRET   72 (223)
T ss_pred             hccC
Confidence            5443

>KOG0520|consensus

Probab=97.85  E-value=2.6e-05  Score=71.07  Aligned_cols=124  Identities=26%  Similarity=0.279  Sum_probs=90.9

Q ss_pred             CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCC
Q psy17862         81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QWGADTQ  159 (265)
Q Consensus        81 ~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~  159 (265)
                      ....|.+.+|++             +..+..-.+..+++..+......|..|...+|+++ .++.+++-+++ -.|..++
T Consensus       570 ~~~r~~lllhL~-------------a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~  635 (975)
T KOG0520|consen  570 VNFRDMLLLHLL-------------AELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAID  635 (975)
T ss_pred             CCCcchHHHHHH-------------HHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccc
Confidence            345677777777             66777888888887434445556777777888854 45555554444 4578899


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCcc------ccCCCCCcHHHHHHhCCChHHHHHHHh
Q psy17862        160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN------AQTNGGLTPLHLAASHSHSRDVLMILL  219 (265)
Q Consensus       160 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~------~~~~~g~tpL~~a~~~~~~~~~~~~L~  219 (265)
                      .+|..|+||||||+.+|+..++..|+..|++..      ...-.|.|+-..|-..|+. .+--+|.
T Consensus       636 i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~-gia~~ls  700 (975)
T KOG0520|consen  636 IRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK-GIAGYLS  700 (975)
T ss_pred             cccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc-chHHHHh
Confidence            999999999999999999999999998876654      3344688998888888775 4444443

>KOG2505|consensus

Probab=97.15  E-value=0.00063  Score=57.49  Aligned_cols=62  Identities=26%  Similarity=0.258  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCCCCCC------CCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        145 ANIVELLIQWGADTQK------TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       145 ~~~~~~Ll~~~~~~~~------~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      ...+.+|.+++...|.      .+..-.|+||+|+..|..++|.+|++.|+|+..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4456666666655442      2333467788888888888888888888888888888888877765

>smart00248 ANK ankyrin repeats

Probab=96.95  E-value=0.0019  Score=31.79  Aligned_cols=24  Identities=46%  Similarity=0.574  Sum_probs=10.5

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCC
Q psy17862        166 WTPLHSACKWNNTECVIVLLNYGV  189 (265)
Q Consensus       166 ~t~l~~a~~~~~~~~v~~Ll~~g~  189 (265)
                      .||+|+++..++.++++.|++.|.
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            344444444444444444444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.91  E-value=0.0013  Score=55.70  Aligned_cols=63  Identities=16%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             CHHHHHHHHhcCCCccc------cCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHh
Q psy17862        177 NTECVIVLLNYGVDVNA------QTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT  241 (265)
Q Consensus       177 ~~~~v~~Ll~~g~~~~~------~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~  241 (265)
                      -...+.+|.+++++.|.      .+..-.|+||||+.+|..+ .+..|++. |+|+.++|..|.||.+++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k-~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARK-CVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHH-HHHHHHHh-cCCchhcccCCCCcccccc
Confidence            35567888888877653      2334569999999999984 55555565 6999999999999999886

>smart00248 ANK ankyrin repeats

Probab=96.90  E-value=0.0023  Score=31.46  Aligned_cols=29  Identities=48%  Similarity=0.777  Sum_probs=25.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQ  159 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  159 (265)
                      .|.||+|+|+..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36789999999999999999999887654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.26  E-value=0.16  Score=39.13  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             chHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----CChHHHHHH-
Q psy17862         99 KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID----GWTPLHSAC-  173 (265)
Q Consensus        99 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~----g~t~l~~a~-  173 (265)
                      ...+-.|+...+.+.+..++...+        ...+++.++..++..+++-+|++. ......|..    +.--+.++. 
T Consensus       154 ~isledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS  224 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLS  224 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHh
Confidence            345666777788887777765322        234677888877777788777774 111111111    111222222 


Q ss_pred             -hcCCHHHHHHHHhcC-CCccc---cCCCCCcHHHHHHhCCChHHHHHHHhhCCCC
Q psy17862        174 -KWNNTECVIVLLNYG-VDVNA---QTNGGLTPLHLAASHSHSRDVLMILLSHPNV  224 (265)
Q Consensus       174 -~~~~~~~v~~Ll~~g-~~~~~---~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~  224 (265)
                       ...+..++++++.+| +++|.   +-..|.|-|.-|+.+++. +++.+|+++ |+
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~-emi~~Llk~-GA  278 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNS-EMIAFLLKY-GA  278 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcH-HHHHHHHHc-Cc
Confidence             234677788888888 77764   345678888888888887 566666666 44

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.53  E-value=0.28  Score=37.84  Aligned_cols=115  Identities=20%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             cHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCC---CcccCCC
Q psy17862         54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDST---LVDAVDK  130 (265)
Q Consensus        54 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~  130 (265)
                      .|-.|+..-+.+.+..++...        ++..+++-+|             +..+..+++.+|+.....   ++- .-.
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~s-------------i~~~K~dva~~lls~f~ft~~dv~-~~~  213 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLS-------------IGNAKEDVALYLLSKFNFTKQDVA-SME  213 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHH-------------hcccHHHHHHHHHhhcceecchhh-hcC
Confidence            455688888888888777652        2345666666             445556666666653211   111 111


Q ss_pred             CCChHHHHHHH--cCCHHHHHHHHHcC-CCCCC---CCCCCChHHHHHHhcCCHHHHHHHHhcCCC
Q psy17862        131 DGYSPLHRACY--NGHANIVELLIQWG-ADTQK---TTIDGWTPLHSACKWNNTECVIVLLNYGVD  190 (265)
Q Consensus       131 ~g~t~l~~a~~--~~~~~~~~~Ll~~~-~~~~~---~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~  190 (265)
                      .+.--+.++..  +.+..+++.++++| +++|.   +-+.|.|.|--|..+++.+++.+|+++|+-
T Consensus       214 ~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  214 KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            12234445433  34578889999998 56663   356799999999999999999999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.08  E-value=0.85  Score=34.09  Aligned_cols=135  Identities=14%  Similarity=0.061  Sum_probs=70.6

Q ss_pred             HHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCCh
Q psy17862         55 ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYS  134 (265)
Q Consensus        55 l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t  134 (265)
                      +.+|++++-..+++++-+....   . -...++.+..|             |+..+.++|+|.-..-    ..  .+-.+
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~---~-~~~~q~LFElA-------------C~~qkydiV~WI~qnL----~i--~~~~~  106 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLEN---E-RYLNQELFELA-------------CEEQKYDIVKWIGQNL----HI--YNPED  106 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhc---c-hhHHHHHHHHH-------------HHHccccHHHHHhhcc----CC--CCchh
Confidence            4467777777777766554111   0 12345555666             5577777887773321    11  11234


Q ss_pred             HHHHHHHcCCHHHH----HHHHHcCCCCCCCCCC--CChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        135 PLHRACYNGHANIV----ELLIQWGADTQKTTID--GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       135 ~l~~a~~~~~~~~~----~~Ll~~~~~~~~~~~~--g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      .+-.|....+.+..    +++..+.......|..  =..-|..|+..|-...+...+++|.+++.      +.|..|+.+
T Consensus       107 iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y  180 (192)
T PF03158_consen  107 IFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY  180 (192)
T ss_pred             hhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh
Confidence            56666666665542    2333332211111100  01235567777777777777777665532      677777777


Q ss_pred             CChHHHHHHHh
Q psy17862        209 SHSRDVLMILL  219 (265)
Q Consensus       209 ~~~~~~~~~L~  219 (265)
                      ++. .+..+++
T Consensus       181 nhR-kIL~yfi  190 (192)
T PF03158_consen  181 NHR-KILDYFI  190 (192)
T ss_pred             hHH-HHHHHhh
Confidence            664 5555443

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.90  E-value=1.4  Score=32.92  Aligned_cols=108  Identities=15%  Similarity=0.072  Sum_probs=70.0

Q ss_pred             cHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHH---HHHhcCCCCcccCCC
Q psy17862         54 NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE---ALLDLDSTLVDAVDK  130 (265)
Q Consensus        54 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~---~ll~~~~~~~~~~~~  130 (265)
                      -+-.|++..+.++|+|+-..-..      .+-.+-+.+|             ...++.+...   .++......-...|.
T Consensus        79 LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA-------------~~~kDlsLyslGY~l~~~~~~~~~~~d~  139 (192)
T PF03158_consen   79 LFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIA-------------FAKKDLSLYSLGYKLLFNRMMSEHNEDP  139 (192)
T ss_pred             HHHHHHHHccccHHHHHhhccCC------CCchhhhhhh-------------hhccchhHHHHHHHHHHhhcccccccCH
Confidence            34479999999999999544222      2334556667             4455555422   122212111101111


Q ss_pred             C--CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy17862        131 D--GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN  186 (265)
Q Consensus       131 ~--g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~  186 (265)
                      .  -.--|..|+..|-...+...+++|.+++.      ++|..|+.+++..++.+++.
T Consensus       140 ~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  140 TSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            0  01246789999999999999999887764      79999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.22  E-value=0.8  Score=29.04  Aligned_cols=47  Identities=11%  Similarity=0.129  Sum_probs=28.2

Q ss_pred             ccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhc
Q psy17862         53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL  120 (265)
Q Consensus        53 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~  120 (265)
                      ..+..|+..|+.++++.+++....        ...++..|             +...+.+.+.+|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~A-------------I~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYA-------------IKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHH-------------HHHhhHHHHHHHHHh
Confidence            456667777777777777654211        13445556             556667777777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.16  E-value=0.65  Score=29.45  Aligned_cols=47  Identities=21%  Similarity=0.195  Sum_probs=29.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q psy17862        134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY  187 (265)
Q Consensus       134 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  187 (265)
                      ..+..|+.+|+.++++.+++.+ .++      ...+..|+.+.+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3566677777777777766543 111      2456777777777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-22
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-22
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-21
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-21
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-21
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-18
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-18
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-18
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-18
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-17
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-16
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-15
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-14
1uoh_A	226	Human Gankyrin Length = 226		2e-14
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-14
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-14
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-13
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-12
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-11
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		7e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		9e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-09
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-09
1ycs_B	239	P53-53bp2 Complex Length = 239		9e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		9e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-07
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		9e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		4e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		6e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		2e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		3e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		4e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-04

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 53  RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
           + +LEAA       +  L+ + +  V+A DKDGY+PLH              AA     +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHL-------------AAREGHLE 49
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
            +E LL   +  V+A DKDGY+PLH A   GH  IVE+L++ GAD      DG+TPLH A
Sbjct: 50  IVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
            +  + E V VLL  G DVNAQ   G TP  LA    H
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGH 146

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 4/157 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A DKDGY+PLH A   GH  IVE+L++ GAD  
Sbjct: 4   KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DG+TPLH A +  + E V VLL  G DVNA+   G TPLHLAA   H   V ++L 
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 220 SHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC 256
           +  +V+        ++  ++A R G H  + E ++  
Sbjct: 123 AGADVNAQ--DKFGKTPFDLAIREG-HEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 82/153 (53%), Gaps = 15/153 (9%)
Query: 53  RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
           + +LEAA       +  L+ + +  V+A DKDGY+PLH A             A     +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLA-------------AREGHLE 49
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
            +E LL   +  V+A DKDGY+PLH A   GH  IVE+L++ GAD      DG+TPLH A
Sbjct: 50  IVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
            +  + E V VLL  G DVNAQ   G TP  LA
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A DKDGY+PLH A   GH  IVE+L++ GAD  
Sbjct: 4   KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DG+TPLH A +  + E V VLL  G DVNA+   G TPLHLAA   H   V ++L 
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 220 SHPNVDPH 227
           +  +V+  
Sbjct: 123 AGADVNAQ 130

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A DKDGY+PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DG+TPLH A +  + E V VLL  G DVNA+   G TPLHLAA   H   V ++L 
Sbjct: 75  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 220 SHPNVDPH 227
           +  +V+  
Sbjct: 135 AGADVNAQ 142

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D DGY+PLH A  NGH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
            + + G TPLH A    + E V VLL +G DVNA  N G TPLHLAA + H  +++ +LL
Sbjct: 75  ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGH-LEIVEVLL 133
Query: 220 SH 221
            H
Sbjct: 134 KH 135

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G +PLH A + GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DGWTPLH A    + E V VLL YG DVNAQ   GLTPLHLAA   H  +++ +LL
Sbjct: 75  ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH-LEIVEVLL 133
Query: 220 SH 221
            H
Sbjct: 134 KH 135

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           ++++EAAE+ +   ++ LL+ +   V+A D DG +PLH A  NGH  +V+LL+  GAD  
Sbjct: 6   KRLIEAAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DG TPLH A +  + E V +LL+ G D NA+ + G TPLHLAA + H ++V+ +LL
Sbjct: 65  AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH-KEVVKLLL 123
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
           S    DP+   +   +  ++A   G
Sbjct: 124 SQ-GADPNTSDSDGRTPLDLAREHG 147

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           RK+LEAA       +  L+  +   V+A D  G +PLH A Y+GH  IVE+L++ GAD  
Sbjct: 16  RKLLEAARAGQDDEVRILM-ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
            + + G+TPLH A  W + E V VLL  G DVNA  + G+TPLHLAA   +  +++ +LL
Sbjct: 75  ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGY-LEIVEVLL 133
Query: 220 SH 221
            H
Sbjct: 134 KH 135

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           ++++EAAE+ +   ++ L++ +   V+A D DG +PLH A   GH  IV+LLI  GAD  
Sbjct: 6   KRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DG TPLH A K  + E V +L++ G DVNA+ + G TPLH AA   H ++++ +L+
Sbjct: 65  AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH-KEIVKLLI 123
Query: 220 S 220
           S
Sbjct: 124 S 124

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
           L  A  NG+ + V+ LI+ GAD   +  DG TPLH A K  + E V +L++ G DVNA+ 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 196 NGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFE 251
           + G TPLH AA   H ++++ +L+S           ++ +A++   R+ +HY   E
Sbjct: 68  SDGRTPLHYAAKEGH-KEIVKLLIS---------KGADVNAKDSDGRTPLHYAAKE 113

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 53  RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
           + ++EAAE+ +   ++ L+++ +  V+A D DG +PLH A  N                K
Sbjct: 6   KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENG--------------HK 50
Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
            +  LL      V+A D DG +PLH A  NGH  +V+LLI  GAD      DG TPLH A
Sbjct: 51  EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 110
Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
            +  + E V +L++ G DVN   + G TPL LA  H +   V ++
Sbjct: 111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           ++++EAAE+ +   ++ LL+ +    +A D DG +PLH A  NGH  IV+LL+  GAD  
Sbjct: 6   KRLIEAAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               DG TPLH A +  + E V +LL+ G D NA+ + G TPLH AA + H ++++ +LL
Sbjct: 65  AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH-KEIVKLLL 123
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
           S    DP+   +   +  ++A   G
Sbjct: 124 SK-GADPNTSDSDGRTPLDLAREHG 147

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+AVD  G +PLH A  +GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
              + G+TPLH A    + E V VLL YG DVNA    G TPLHLAA   H   V ++L
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA     +T+ ALL+ +++    + K G++PLH A             A++   +  E L
Sbjct: 120 AAREGHVETVLALLEKEASQA-CMTKKGFTPLHVA-------------AKYGKVRVAELL 165
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L+ D+   +A  K+G +PLH A ++ + +IV+LL+  G        +G+TPLH A K N 
Sbjct: 166 LERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
            E    LL YG   NA++  G+TPLHLAA   H+  V ++L
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
           +PLH A + GH  IV+ L+Q GA    + +   TPLH A +  +TE    LL     VNA
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 194 QTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           +     TPLH AA   H+  V ++L +  N +P++ +T+  +   IA R G
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREG 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 14/135 (10%)
Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
           +G +PLH A  N       LE  +      LEA  D     V+A DK+G +PLH A  NG
Sbjct: 1   NGRTPLHLAARNGH-----LEVVK----LLLEAGAD-----VNAKDKNGRTPLHLAARNG 46
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
           H  +V+LL++ GAD      +G TPLH A +  + E V +LL  G DVNA+   G TPLH
Sbjct: 47  HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 204 LAASHSHSRDVLMIL 218
           LAA + H   V ++L
Sbjct: 107 LAARNGHLEVVKLLL 121

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G +PLH    NGH  I+E+L+++ AD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
            +   GWTPLH A    + E V VLL YG DVNA    G TPLHLAA   H  +++ +LL
Sbjct: 75  ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGH-LEIVEVLL 133
Query: 220 SH 221
            +
Sbjct: 134 KY 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 48  QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE 107
           QD  K+ +LEAA       +  L+ + +  V+A D +G +PLH A  N   + +I+E   
Sbjct: 4   QDLGKK-LLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAAN--GQLEIVEVLL 59
Query: 108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWT 167
            N +             V+A D  G +PLH A Y+GH  IVE+L++ GAD       GWT
Sbjct: 60  KNGAD------------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT 107
Query: 168 PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
           PLH A      E V VLL +G DVNAQ   GLT  
Sbjct: 108 PLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 93  CYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
            +     +K+LEAA       +  L+  +   V+A D +G +PLH A  NG   IVE+L+
Sbjct: 1   AFGQDLGKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR 212
           + GAD   +   G TPLH A    + E V VLL +G DVNA    G TPLHLAA  S   
Sbjct: 60  KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL-SGQL 118
Query: 213 DVLMILLSH 221
           +++ +LL H
Sbjct: 119 EIVEVLLKH 127

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G++PLH A Y GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGRDDEVRILM-ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
                G TPLH A  + + E V VLL  G DVNA+ + G+TPLHLAA+  H  +++ +LL
Sbjct: 75  AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGH-LEIVEVLL 133
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
            +   D +      ++A +I+  +G
Sbjct: 134 KY-GADVNAQDKFGKTAFDISINNG 157

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G++PLH A Y GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
                G TPLH A    + E V VLL  G DVNA  + G TPLHLAA+  H  +++ +LL
Sbjct: 75  ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGH-LEIVEVLL 133
Query: 220 SH 221
            H
Sbjct: 134 KH 135

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
                G TPLH A K  + E V VLL YG DVNA    G TPLHLAA   H  +++ +LL
Sbjct: 75  ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGH-LEIVEVLL 133
Query: 220 SH 221
            +
Sbjct: 134 KY 135

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G++PLH A + GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
                G TPLH A +  + E V VLL  G DVNA  + G TPLHLAA   H   V ++L 
Sbjct: 75  AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 220 SHPNVDPH 227
           +  +V+  
Sbjct: 135 NGADVNAQ 142

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
              I G TPLH A    + E V VLL +G DVNA    G TPLHLAA   H  +++ +LL
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH-LEIVEVLL 133
Query: 220 SH 221
            H
Sbjct: 134 KH 135

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +    +A D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 4   KKLLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
               +G TPLH A    + E V VLL YG DVNA+   G+TPL+LAA   H  +++ +LL
Sbjct: 63  AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGH-LEIVEVLL 121
Query: 220 SH 221
            H
Sbjct: 122 KH 123

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
              I G TPLH A    + E V VLL +G DVNA    G TPLHLAA   H  +++ +LL
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH-LEIVEVLL 133
Query: 220 SH 221
            H
Sbjct: 134 KH 135

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G++PLH A +NGH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
                G TPL  A  + + E V VLL  G DVNA    G TPLHLAA   H   V ++L 
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 220 SHPNVDPH 227
           +  +V+  
Sbjct: 135 NGADVNAQ 142

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
                G TPLH A  + + E V VLL  G DVNA    G TPLHLAA   H  +++ +LL
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGH-LEIVEVLL 133
Query: 220 SH 221
            +
Sbjct: 134 KY 135

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D  G++PLH A   GH  IVE+L+++GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
                G TPLH A    + E V VLL +G DVNA+   G TPLHLAA   H   V ++L
Sbjct: 75  AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
           +G +PLH A  NGH  +V+LL++ GAD      +G TPLH A +  + E V +LL  G D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMIL 218
           VNA+   G TPLHLAA + H   V ++L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           D +L    D+D  + LH AC  GH  IVE L+Q G         GW+PLH A      E 
Sbjct: 30  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
           V  LL  G  VNA    G TPLH AAS +     +M+L   ++P+   H  +T+   A  
Sbjct: 90  VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 239 IATRSGIHYGLF 250
                 IH  L+
Sbjct: 150 KGNLKMIHILLY 161

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           D +L    D+D  + LH AC  GH  IVE L+Q G         GW+PLH A      E 
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
           V  LL  G  VNA    G TPLH AAS +     +M+L   ++P+   H  +T+   A  
Sbjct: 89  VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148
Query: 239 IATRSGIHYGLF 250
                 IH  L+
Sbjct: 149 KGNLKMIHILLY 160

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 98  NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
            K ++LEAA   + + L ALL   +    A D    +PLH A       IV+LL+Q GAD
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 158 TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
                  G  PLH+AC + + E   +LL +G  VNA      TPLH AAS +   +V  +
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV-EVCSL 142
Query: 218 LLSHPNVDPHILSTSNESAREIA 240
           LLSH   DP +++   +SA ++A
Sbjct: 143 LLSH-GADPTLVNCHGKSAVDMA 164

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           D +L    D+D  + LH AC  GH  IVE L+Q G         GW+PLH A      E 
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
           V  LL  G  VNA    G TPLH AAS +     +M+L   ++P+   H  +T+   A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 239 IATRSGIHYGLF 250
                 +H  LF
Sbjct: 149 KGNLKMVHILLF 160

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           D +L    D+D  + LH AC  GH  IVE L+Q G         GW+PLH A      E 
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL--SHPNVDPHILSTSNESARE 238
           V  LL  G  VNA    G TPLH AAS +     +M+L   ++P+   H  +T+   A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 239 IATRSGIHYGLF 250
                 +H  LF
Sbjct: 149 KGNLKMVHILLF 160

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 52/88 (59%)
Query: 130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
           KDG +PLH A  NGHA  V+ L+  GAD    + DG TPLH A K  + E V +LL  G 
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMI 217
           DVNA++  G TP HLA  + H   V ++
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
           DG TPLH+A K  + E V  LL+ G DVNA++  G TPLHLAA + H+  V ++L    +
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 224 VDPHILSTSNESAREIATRSGIH 246
           V+    S    +   +A ++G H
Sbjct: 68  VNAR--SKDGNTPEHLAKKNGHH 88

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A+D+DG +PLH A   GH  IVE+L+++GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
                G TPLH A    + E V VLL +G DVNAQ   G T  
Sbjct: 75  AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEA        +  L+  +   V+A+D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
            + I G TPLH A    + E V VLL YG DVNAQ   G T   ++
Sbjct: 75  ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEA        +  L+  +   V+A+D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
              I G TPLH A    + E V VLL YG DVNAQ   G T   ++
Sbjct: 75  ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
           V+   +DG SPLH A             A H  +  +  LL   +    A + D   PLH
Sbjct: 79  VNVTSQDGSSPLHVA-------------ALHGRADLIPLLLKHGAN-AGARNADQAVPLH 124
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
            AC  GH  +V+ L+   A   K  + G TPL  AC   + E V +LL +G  +NA  N 
Sbjct: 125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK 184
Query: 198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF 257
           G T LH A    H   V ++LL   +V   +L+    +A + A ++     L + +  C 
Sbjct: 185 GNTALHEAVIEKHVFVVELLLLHGASV--QVLNKRQRTAVDCAEQNSKIMELLQVVPSCV 242
Query: 258 NNL 260
            +L
Sbjct: 243 ASL 245

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A DK G +PLH A  N H  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
                G TPLH    + + E V VLL +G DVNAQ   G T   ++
Sbjct: 75  AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEA        +  L+  +   V+A+D  G +PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
            +   G TPLH A    + E V VLL YG DVNAQ   G T   ++
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
           N +  R++LEAA+  D +T++ L  + S     ++    +PLH A      ++VE L+Q 
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GAD       G  PLH+AC + + E   +L+ +G  VN       TPLH AA+     ++
Sbjct: 67  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEI 125
Query: 215 LMILLSHPNVDP 226
             +LL H   DP
Sbjct: 126 CKLLLQH-GADP 136

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
           N +  R++LEAA+  D +T++ L  + S     ++    +PLH A      ++VE L+Q 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GAD       G  PLH+AC + + E   +L+ +G  VN       TPLH AA+     ++
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEI 123
Query: 215 LMILLSHPNVDP 226
             +LL H   DP
Sbjct: 124 CKLLLQH-GADP 134

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
           N +  R++LEAA+  D +T++ L  + S     ++    +PLH A      ++VE L+Q 
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GAD       G  PLH+AC + + E   +L+ +G  VN       TPLH AA+     ++
Sbjct: 69  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEI 127
Query: 215 LMILLSHPNVDP 226
             +LL H   DP
Sbjct: 128 CKLLLQH-GADP 138

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D+ G +PLH A    H  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
               DG TPLH A  + + E V VLL +G DVNAQ   G T  
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V+A D+ G +PL+ A  +GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
                G+TPLH A    + E   VLL +G DVNAQ   G T  
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  +L  +   V+A D  G++PLH A   GH  IVE+L++ GAD  
Sbjct: 16  KKLLEAARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
            T   G TPLH A   ++ E V VLL +G DVNAQ   G T  
Sbjct: 75  ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
           EAA H    +L  L+      V+ +  D  SPLH AC  GH + V++L++ GA     T 
Sbjct: 9   EAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 67
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
           D  TPL +AC   + +CV +LL +G  V  +++   +P+H AA   H   V  ++    N
Sbjct: 68  DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGN 126
Query: 224 VD 225
           +D
Sbjct: 127 ID 128

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
           EAA H    +L  L+      V+ +  D  SPLH AC  GH + V++L++ GA     T 
Sbjct: 65  EAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123
Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
           D  TPL +AC   + +CV +LL +G  V  +++   +P+H AA   H   V  ++    N
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGN 182
Query: 224 VD 225
           +D
Sbjct: 183 ID 184

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+   +      D  G SPLH A   GH +  E+L++ G    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
             T    TPLH A    +   V VLL +G DVNA+    +T LH A  H+H ++V+ +L+
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH-QEVVELLI 120
Query: 220 SHPNVDPHILSTSNESAREIATRSG 244
            +   D H  S   ++A +I+  +G
Sbjct: 121 KY-GADVHTQSKFCKTAFDISIDNG 144

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 50  KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHN 109
           +NKR+ L AA       +  +L      +D   +D  +PL             +EAAE+N
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL-------------MEAAENN 55
Query: 110 DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG-ADTQKTTIDGWTP 168
             + ++ L+     LVD  D +G + LH A   GH  +V+ L+  G  D       GWTP
Sbjct: 56  HLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 169 LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHI 228
           +  A ++ + + V +LL+ G D+N + N     LH AA  S   D+  ILL+    D H 
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-FSGCVDIAEILLA-AKCDLHA 172
Query: 229 LSTSNESAREIATR 242
           ++   +S   IA R
Sbjct: 173 VNIHGDSPLHIAAR 186

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIV 183
           +++  D++G++PL  A  +G   +VE L+Q GAD Q       + L  AC    T+ V +
Sbjct: 44  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 103
Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS 243
           LL+ GVDVN     G TPL  A   +H + V M+L S    DP I + S  ++ ++A   
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVAL 161
Query: 244 G 244
           G
Sbjct: 162 G 162

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIV 183
           +++  D++G++PL  A  +G   +VE L+Q GAD Q       + L  AC    T+ V +
Sbjct: 28  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS 243
           LL+ GVDVN     G TPL  A   +H + V M+L S    DP I + S  ++ ++A   
Sbjct: 88  LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVAL 145
Query: 244 G 244
           G
Sbjct: 146 G 146

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIV 183
           +++  D++G++PL  A  +G   +VE L+Q GAD Q       + L  AC    T+ V +
Sbjct: 26  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 85
Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS 243
           LL+ GVDVN     G TPL  A   +H + V M+L S    DP I + S  ++ ++A   
Sbjct: 86  LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVAL 143
Query: 244 G 244
           G
Sbjct: 144 G 144

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
           D  G++PLH AC +GH  +VELL+Q  A    T     +PLH A K  + + V +LL+YG
Sbjct: 40  DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 189 VDVNAQTNGGLTPL 202
              NA    GL P+
Sbjct: 100 ASRNAVNIFGLRPV 113

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 113 TLEALLDLDSTLVDAVDK------DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
           +LE   DL   ++  VD       +G + LH A   GH  IV+ L+Q+G +      DGW
Sbjct: 45  SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQT 195
           TPLH A   NN +    L+  G  V A T
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 113 TLEALLDLDSTLVDAVDK------DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
           +LE   DL   ++  VD       +G + LH A   GH  IV+ L+Q+G +      DGW
Sbjct: 45  SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQT 195
           TPLH A   NN +    L+  G  V A T
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 96  DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQW 154
           DK    +L  A  N+   L         +VD +  D   +PLH A   GH ++V  L+++
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GAD      +G + +H A ++ +T  V  L+  G DV+     G+TPL  AA  +HS D 
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 215 LMILLS 220
             +LL+
Sbjct: 159 TRLLLT 164

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 54  NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
           +I       ++  +   LD+    ++  D  G+SPLH AC   +             S  
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------------SAV 54
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
           +E L+ +    ++ +++   +PLH A  +GH +IV+ L+Q+ AD       G  PLH AC
Sbjct: 55  VEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 113
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
            W   +    L+  G  V+     G  P+  A +
Sbjct: 114 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G++PLH AC+   +  V +L+  G  +N    G  TPLHLAASH H RD++  LL +
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH-RDIVQKLLQY 94

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 54  NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
           +I       ++  +   LD+    ++  D  G+SPLH AC   +             S  
Sbjct: 3   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------------SAV 49
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
           +E L+ +    ++ +++   +PLH A  +GH +IV+ L+Q+ AD       G  PLH AC
Sbjct: 50  VEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 108
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
            W   +    L+  G  V+     G  P+  A +
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G++PLH AC+   +  V +L+  G  +N    G  TPLHLAASH H RD++  LL +
Sbjct: 34  GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH-RDIVQKLLQY 89

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
           D  G +PLH AC     +  +        S T   L     +++ A + +G++ LH A  
Sbjct: 75  DFRGNTPLHLAC----EQGCLASVGVLTQSCTTPHL----HSILKATNYNGHTCLHLASI 126
Query: 142 NGHANIVELLIQWGADTQ-KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
           +G+  IVELL+  GAD   +   +G T LH A    N + V +LL  G DVN  T  G +
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 201 PLHLAASHSHSR 212
           P  L      +R
Sbjct: 187 PYQLTWGRPSTR 198

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
           D  G +PLH AC     +  +        S T   L     +++ A + +G++ LH A  
Sbjct: 72  DFRGNTPLHLAC----EQGCLASVGVLTQSCTTPHL----HSILKATNYNGHTCLHLASI 123
Query: 142 NGHANIVELLIQWGADT-QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
           +G+  IVELL+  GAD   +   +G T LH A    N + V +LL  G DVN  T  G +
Sbjct: 124 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Query: 201 PLHLAASHSHSR 212
           P  L      +R
Sbjct: 184 PYQLTWGRPSTR 195

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 85  GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
           G   L   C  D+    +  AA   D + +  LL  +    DA+++ G + L    +   
Sbjct: 1   GSMLLEEVCVGDR----LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP 56
Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
           A  +ELL Q GA        G +P+H A +    + + VL+ +G DVNA  + G  P+HL
Sbjct: 57  AVALELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 115
Query: 205 AASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           A    HS  V  +    P  D H    S  +  E+A + G
Sbjct: 116 AIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRG 152

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 89  LHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV 148
           L   C  D+    +  AA   D + +  LL  +    DA+++ G + L    +   A  +
Sbjct: 3   LEEVCVGDR----LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVAL 58
Query: 149 ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
           ELL Q GA        G +P+H A +    + + VL+ +G DVNA  + G  P+HLA   
Sbjct: 59  ELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
            HS  V  +    P  D H    S  +  E+A + G
Sbjct: 118 GHSSVVSFL---APESDLHHRDASGLTPLELARQRG 150

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 78  VDAVDKDGYSPL--------HRACYNDKNKRKI-LEAAEHNDSKTL--EALLDLDSTLVD 126
           V AV+ +G +PL             N+ N++ + +EAA   + + +  +A   L+S  ++
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 127 AVD--KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
            V   K G + LH A   G+  +++LLIQ   D      DGWTPLH+A  W   E   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 185 LNYGVDVNAQTNGGLTPLHLA 205
           +    D+ A    G T   +A
Sbjct: 252 VENLCDMEAVNKVGQTAFDVA 272

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 139 ACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
           AC +G    V  L++ GAD     +DG T LH AC  +N + V  L+  G ++N   N G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
             PLH AAS  +  D+   L+S 
Sbjct: 107 WIPLHAAASCGY-LDIAEYLISQ 128

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 22/165 (13%)
Query: 58  AAEHNDSKTLEALLDHDS--TL-VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           A EH     L ALLD  +  TL ++A + DG + LH A   +  +             T+
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE-------------TV 132
Query: 115 EALLDLDSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
           + LL+  +  +DAVD K G SPL  A  N   ++V+LL+Q GA+       G + LHSA 
Sbjct: 133 QLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
                  V  L+  G D + +     TPL +A     SR V+ IL
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA----RSRRVIDIL 232

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
             L  A   G  + V +L+  GAD      DG+TPLH A +  + E V VLL  G DVNA
Sbjct: 4   KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 194 QTNGGLTPLHLA 205
           Q   G T   ++
Sbjct: 64  QDKFGKTAFDIS 75

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID-GWTPLHSACKWNNTECVIV 183
           ++A + DG++PLH A  +  A +V LL   GAD  K     G TPLH A +      + +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 184 LLNYGVDVNAQTNGGLTPL 202
           LL  G D  A+  GG TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 54  NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
           +I + A   +   L+  L     LV+  D+ G++PL             + A+   + +T
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL-------------IWASAFGEIET 51
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
           +  LL+  +     + K+  S L  A   G+ +IV LL++   D      +G TPL  A 
Sbjct: 52  VRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           + N+ +CV  LL  G D+  + + G TP+ LA +  + R V  ++ +H
Sbjct: 111 RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQQVIENH 157

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA   D + +  LL  +    DA+++ G + L    +   +    LE  +   S  ++  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGASPNVQ-- 70
Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
                      D  G SP+H A   G  + +++L++ GAD       G  P+H A +  +
Sbjct: 71  -----------DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           T  V+  L    D++ +   GLTPL LA     ++D++ IL  H
Sbjct: 120 T-AVVSFLAAESDLHRRDARGLTPLELALQRG-AQDLVDILQGH 161

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
           AA   D + +  LL  +    DA+++ G + L    +   A  +ELL Q GA        
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ-GASPNVQDTS 67
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS 211
           G +P+H A +    + + VL+ +G DVN     G  P+HLA    H+
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +++A ++ D   ++ LL+  + +    ++ G++PLH A      +IVELL++ GAD    
Sbjct: 29  LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             +G TP   A    + + + + L+ G DVN     G T    AA +   + +  +    
Sbjct: 89  KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 222 PNVD 225
            NV+
Sbjct: 149 ANVN 152

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
           +A   N+   ++ LL    +L+   D+DG  PLH +          +    H  +  L +
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS----------VSFQAHEITSFLLS 57
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI--QWGADTQKTTIDGWTPLHSACK 174
            ++ +  L D  D  G++P H AC  G+  +V+ L       D  K T  G T LH A  
Sbjct: 58  KME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
               E    L+  G  V  +      PLH AAS
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
           +A   N+   ++ LL    +L+   D+DG  PLH +          +    H  +  L +
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS----------VSFQAHEITSFLLS 57
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI--QWGADTQKTTIDGWTPLHSACK 174
            ++ +  L D  D  G++P H AC  G+  +V+ L       D  K T  G T LH A  
Sbjct: 58  KME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
               E    L+  G  V  +      PLH AAS
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEA 116
           +A   N+   ++ LL    +L+   D+DG  PLH +          +    H  +  L +
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS----------VSFQAHEITSFLLS 57
Query: 117 LLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI--QWGADTQKTTIDGWTPLHSACK 174
            ++ +  L D  D  G++P H AC  G+  +V+ L       D  K T  G T LH A  
Sbjct: 58  KME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
               E    L+  G  V  +      PLH AAS
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 54  NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT 113
           +I + A   +   L+  L     LV+  D+ G++PL             + A+   + +T
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL-------------IWASAFGEIET 51
Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC 173
           +  LL+  +     + K+  S L  A   G+ +IV LL++   D      +G TPL  A 
Sbjct: 52  VRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             N+ +CV  LL  G D+  + + G TP+ LA +  + R V  ++ +H
Sbjct: 111 HGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQQVIENH 157

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +++A ++ D   ++ LL+  + +    ++ G++PLH A      +IVELL++ GAD    
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             +G TP   A    + + + + L+ G DVN     G T    AA +   + +  +    
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 222 PNVD 225
            NV+
Sbjct: 129 ANVN 132

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 55  ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           +LEAA   D+K ++ +L   +  VD VD +G +PL+ A +N             ND +  
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-------------NDIEIA 55
Query: 115 EALLD--LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHS 171
           +AL+D   D  L +++     SP   A   G   I+  +++    D  K    G   L  
Sbjct: 56  KALIDRGADINLQNSISD---SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112
Query: 172 ACKWNNTECVIVLLNYGV-DVNAQTNGGLTPL----HLAASHSHSRDVLMILLSHPNVDP 226
           A +  + + V +LL  G  D++ Q + G T L     L   +   +D++ +L+ +   D 
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQ 171
Query: 227 HILSTSNESAREIATRSG 244
            I   S  +A + A + G
Sbjct: 172 SIKDNSGRTAMDYANQKG 189

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
           A ++N     E LL   S  V+  D  G +PL  +   G++ +   L++ GA+     ++
Sbjct: 75  AVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
           G TPL  A K+  +E V  LL  G D++A+   GLT 
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
           D +G + L  A  N    I E L+  G++       G TPL  +  +  +E    LL +G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILS--TSNESAR 237
            +VN +   G TPL +A+ +  S  V  +L    ++    L+  T+  SAR
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 105 AAEHNDSKTLEALL-DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTT 162
           AA   D + L  LL D D   VDAVD++G + L      G    V LL + GAD   +  
Sbjct: 51  AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
             G T LH A  +   E V  L+  G D+  +   GLT L LA
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI-DGWTPLHSACKWNNTECVIVLLNY 187
           D  G +PLH A       + ++L++  A      + DG TPL  A +      V  L+  
Sbjct: 81  DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
             D+NA  N G T LH AA+ +++  V ++L+ H N D       +E+   +A R G
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ--DDKDETPLFLAAREG 195

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V A DK+G +PLH A  NGH  +V+LL++ GAD  
Sbjct: 26  KKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 160 KTTIDGWTPLHSACKWNNTECVIVL 184
                G T    +    N +   +L
Sbjct: 85  AQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
           +K+LEAA       +  L+  +   V A DK+G +PLH A  NGH  +V+LL++ GAD  
Sbjct: 8   KKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 160 KTTIDGWTPLHSACKWNNTECVIVL 184
                G T    +    N +   +L
Sbjct: 67  AQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 105 AAEHNDSKTLEALL-DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTT 162
           AA   D + L  LL D D   VDAVD++G + L      G    V LL + GAD   +  
Sbjct: 52  AARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
             G T LH A  +   E V  L+  G D+  +   GLT L LA
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
           +++G + LH A    + +IV+ LI  GA+       GWTPLH A   N+T   + L+ +G
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 189 VDVNAQT 195
             + A T
Sbjct: 111 AAIFATT 117

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
           ++A + DG++PLH A               H D++ +  L D  + L       G +PLH
Sbjct: 151 LEAENYDGHTPLHVAVI-------------HKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
            A     A+++ELL++ GAD       G TPL SA    N     +L  +G 
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 131 DGYSPLHRACYNGH--------------ANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
           DG++PL  A  +G               A I + + Q  +   +T   G T LH A +++
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
            ++    LL    D N Q N G TPLH A S + ++ V  IL+ +   D
Sbjct: 69  RSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD 116

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 70  LLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD 129
           LLD+   +V+  D +G + LH +               H +   ++ LLD     VD  +
Sbjct: 99  LLDY---VVNIADSNGNTALHYS-------------VSHANFPVVQQLLDSGVCKVDKQN 142
Query: 130 KDGYSPLHR---ACYNGHANI--VELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
           + GYSP+     A      +I  V  L + G    K +  G T L  A      + V  L
Sbjct: 143 RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL 202
Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           L    DVN Q + G T L  A  H H +++  +LL+ P+ D  +      +A  +A  +G
Sbjct: 203 LACEADVNVQDDDGSTALMCACEHGH-KEIAGLLLAVPSCDISLTDRDGSTALMVALDAG 261

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 125 VDAVDKDGYSPLHRACYNGH--------------ANIVELLIQWGADTQKTTIDGWTPLH 170
           V+    DG++PL  A  +G               A I + + Q  +   +T   G T LH
Sbjct: 4   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 63
Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
            A +++ ++    LL    D N Q N G TPLH A S + ++ V  IL+ +   D
Sbjct: 64  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD 117

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
           DG++PL  A  +           E +    +   +   ++L +  D+ G + LH A    
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGVDVNAQTNGGLTPL 202
            ++  + L++  AD       G TPLH+A   +      +L+ N   D++A+ + G TPL
Sbjct: 69  RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 203 HLAA 206
            LAA
Sbjct: 129 ILAA 132

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 131 DGYSPLHRACYNGH--------------ANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
           DG++PL  A  +G               A I + + Q  +   +T   G T LH A  ++
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
            ++    LL    D N Q N G TPLH A S + ++ V  IL+ +   D
Sbjct: 69  RSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD 116

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
           G  PLH A   G   I+E L+  GAD         TPL SA    +  CV +LL+ G D 
Sbjct: 35  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 192 NAQTNGGLTPL 202
             +   GLT L
Sbjct: 95  TVKGPDGLTAL 105

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
           +IV+ L+Q   +  K T  G T LH  C  +N EC+ +LL     +      G TPL +A
Sbjct: 186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Query: 206 A--SHSHSRDVLMILLS 220
               H H  ++L   LS
Sbjct: 246 KRLKHEHCEELLTQALS 262

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
           ++L +  D+ G + LH A     ++  + L++  AD       G TPLH+A   +     
Sbjct: 12  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVF 71
Query: 182 IVLL-NYGVDVNAQTNGGLTPLHLAA 206
            +LL N   D++A+ + G TPL LAA
Sbjct: 72  QILLRNRATDLDARMHDGTTPLILAA 97

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 55  ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           +L AA+ ND + L  LL  +   V      G + LH A   D      LEAA       +
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDN-----LEAA----MVLM 57
Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID---------- 164
           EA  +L    + +   +G + LH A  N + N+V  L+  GA                  
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 165 ---GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
              G  PL  A    + E V +L+ +G D+ AQ + G T LH+
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
           G+  I   L+  GA+       G+  +H A +    + +  LL +  DVN + N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
           HLAA   H R V+  L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 32/71 (45%)
Query: 132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV 191
           G  PLH A   G   I+E L+  GAD         TPL SA    +  CV +LL+ G D 
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 192 NAQTNGGLTPL 202
             +   GLT  
Sbjct: 100 TVKGPDGLTAF 110

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
           ++L +  D+ G + LH A     ++  + L++  AD       G TPLH+A   +     
Sbjct: 15  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74
Query: 182 IVLL-NYGVDVNAQTNGGLTPLHLAA 206
            +L+ N   D++A+ + G TPL LAA
Sbjct: 75  QILIRNRATDLDARMHDGTTPLILAA 100

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
           G+  I   L+  GA+       G+  +H A +    + +  LL +  DVN + N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
           HLAA   H R V+  L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 143 GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL 202
           G+  I   L+  GA+       G+  +H A +    + +  LL +  DVN + N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 203 HLAASHSHSRDVLMILLSH 221
           HLAA   H R V+  L+ H
Sbjct: 108 HLAAKEGHLR-VVEFLVKH 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-45
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-39
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-37
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-39
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-39
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-38
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-38
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-36
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-37
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-37
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-37
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-32
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-35
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-35
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-35
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	6e-35
2rfa_A	232	Transient receptor potential cation channel subfa	6e-30
2rfa_A	232	Transient receptor potential cation channel subfa	6e-24
2rfa_A	232	Transient receptor potential cation channel subfa	2e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-34
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-31
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-14
2etb_A	256	Transient receptor potential cation channel subfam	1e-29
2etb_A	256	Transient receptor potential cation channel subfam	6e-24
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-29
2pnn_A	273	Transient receptor potential cation channel subfa	3e-20
2pnn_A	273	Transient receptor potential cation channel subfa	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-29
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-17
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-09

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  148 bits (376), Expect = 6e-45
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 15/164 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
                ++  +   LD+    ++  D  G+SPLH AC                 S  +E L
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-------------GRSAVVEML 58

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           +   +  ++ +++   +PLH A  +GH +IV+ L+Q+ AD       G  PLH AC W  
Sbjct: 59  IMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            +    L+  G  V+     G  P+  A +      +       
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  132 bits (335), Expect = 1e-38
 Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
             +    +   C                ++  +   LD     ++  D  G+SPLH AC 
Sbjct: 2   SPEFMDDIFTQCRE-------------GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR 48

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
            G + +VE+LI  GA          TPLH A    + + V  LL Y  D+NA    G  P
Sbjct: 49  EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108

Query: 202 LHLAASHSHSRDVLMILLSH 221
           LH A        V   L+++
Sbjct: 109 LHYACFWGQ-DQVAEDLVAN 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  114 bits (287), Expect = 2e-31
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 22/168 (13%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N  D +  + L  A     S  +E L+   +  ++ +++   +PLH A  +        +
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGH-----RD 86

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
             +         LL   +  ++AV++ G  PLH AC+ G   + E L+  GA        
Sbjct: 87  IVQK--------LLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR 212
           G  P+  A               G ++N        P         +R
Sbjct: 138 GEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGTTR 179

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  143 bits (364), Expect = 4e-43
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
            A   +   L+  L     LV+  D+ G++PL  A                 + +T+  L
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-------------GEIETVRFL 55

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L+  +     + K+  S L  A   G+ +IV LL++   D      +G TPL  A + N+
Sbjct: 56  LEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            +CV  LL  G D+  + + G TP+ LA +  + R V  ++ +H
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGY-RKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  127 bits (322), Expect = 8e-37
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 85  GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
               +H+                  +   L+  L     LV+  D+ G++PL  A   G 
Sbjct: 2   DSLSIHQLAAQ-------------GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE 48

Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
              V  L++WGAD      +  + L  A     T+ V +LL   VD+N     G TPL  
Sbjct: 49  IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108

Query: 205 AASHSHSRDVLMILLSH 221
           A   +H    +  LL+ 
Sbjct: 109 AVRGNHV-KCVEALLAR 124

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  120 bits (304), Expect = 3e-34
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 43  DSRNPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRK 101
           +  N  D+     L  A+   + +T+  LL+  +     + K+  S L  A         
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG----- 80

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
                 + D   +  LL+ D   ++  D +G +PL  A    H   VE L+  GAD    
Sbjct: 81  ------YTD--IVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
              G+TP+  A      +   V+ N+ + +         P
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  144 bits (366), Expect = 4e-42
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 25/196 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
           N    +  + L EA        ++ LL H +  V+ V  D ++PL  AC +         
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 96  -----DKNKRK-----ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
                           I EAA     + + +L+      +D       +PL+ AC N   
Sbjct: 145 LQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQR 203

Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
             V+ L++ GAD  +      +PLH+  +  + E   +L+++G D  A+   G  P+ L 
Sbjct: 204 ACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

Query: 206 ASHSHSRDVLMILLSH 221
              S    +   L   
Sbjct: 263 PPESPLAQLF--LERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  137 bits (348), Expect = 2e-39
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 22/182 (12%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDK-----DGYSPLHRACY------------NDKNKR 100
            + H+       L+   S  + ++D      DG  P     +            +  +  
Sbjct: 2   GSSHHHHHHSSGLVPRGSH-MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 101 KIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ 159
             + EAA H    +L  L+      V+ +  D  SPLH AC  GH + V++L++ GA   
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
             T D  TPL +AC   + +CV +LL +G  V  +++   +P+H AA   H  + +  L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGH-VECVNSLI 177

Query: 220 SH 221
           ++
Sbjct: 178 AY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (257), Expect = 4e-26
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 49  DKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAE 107
           + +  + + EAA     + + +L+ +    +D       +PL+ AC N            
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQ----------- 201

Query: 108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWT 167
                 ++ LL+  +  V+   K   SPLH         +  LL+ +GADTQ    +G  
Sbjct: 202 QRA--CVKKLLESGAD-VNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257

Query: 168 PLHSACKWNNTECVIVLLNYGVDVNA 193
           P+       +    + L   G  +  
Sbjct: 258 PVELVPP-ESPLAQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 11/58 (18%)

Query: 172 ACKWNNTECVIVLLNYGVDVNAQTNG-----GLTPLHLAASHSHSRDVLMILLSHPNV 224
               ++      L+  G  + +         G  P                LLS+P +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI------RLLSNPLM 53

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  140 bits (356), Expect = 4e-42
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 16/164 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
            A   +   L   ++ ++  ++  D++G++PL  A  +                  +E L
Sbjct: 10  LAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAH-------------GQIAVVEFL 55

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +     + K   S L  AC  G+ +IV++L+  G D  +   +G TPL  A   N+
Sbjct: 56  LQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            +CV +LL  G D   +T+ G   + LA +  + R V  ++ SH
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLAVALGY-RSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  114 bits (288), Expect = 7e-32
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N  D+     L  AA H     +E LL + +     + K   S L  AC           
Sbjct: 30  NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG-------- 80

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
              + D   ++ LLD     V+  D +G +PL  A +  H   V++L++ GAD    T  
Sbjct: 81  ---YTD--IVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 134

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
           G+  +  A          V+ ++ + +     
Sbjct: 135 GYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (264), Expect = 3e-28
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
                +H+    G    +   I+       T  +G+TPL  A        V  LL  G D
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
                 G  + L LA S  +  D++ +LL  
Sbjct: 62  PQLLGKGRESALSLACSKGY-TDIVKMLLDC 91

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.7 bits (177), Expect = 1e-15
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 16/120 (13%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
               K + + L  A     +  ++ LLD     V+  D +G +PL  A +          
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHG--------- 112

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
               N  K ++ LL+  +         GY+ +  A   G+ ++ +++        +   +
Sbjct: 113 ----NHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (361), Expect = 6e-42
 Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 23/197 (11%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
             + +NKR+ L  AAE         L+   +  +D   +D  +PL  A  N         
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 96  -----DKNKRK------ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
                  + +       +  AA+    + ++ LL      V+  D  G++P+  A    H
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
            ++V+LL+  G+D      +    LH A      +   +LL    D++A    G +PLH+
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183

Query: 205 AASHSHSRDVLMILLSH 221
           AA  +   D +++ LS 
Sbjct: 184 AARENR-YDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  138 bits (351), Expect = 2e-40
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           +P+D      L  AA+    + ++ LL +    V+  D  G++P+  A            
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY--------- 121

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                    ++ LL   S  ++  D +    LH A ++G  +I E+L+    D     I 
Sbjct: 122 ----KHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G +PLH A + N  +CV++ L+   DV  +   G TPL  A+ +S      + +   
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ-VWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (313), Expect = 9e-35
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 16/145 (11%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
                ++  SPLH A                        L+   +  +D   +D  +PL 
Sbjct: 4   FKMEHQNKRSPLHAAAEA-------------GHVDICHMLVQAGAN-IDTCSEDQRTPLM 49

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTN 196
            A  N H   V+ LI+ GA       +G T LH A K  + E V  LL+ G +DVN Q +
Sbjct: 50  EAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
           GG TP+  A  + H  D++ +LLS 
Sbjct: 110 GGWTPMIWATEYKH-VDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 16/114 (14%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N +D  +   L  AA        E LL      + AV+  G SPLH A            
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARE--------- 187

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
               N    +   L  DS  V   +K+G +PL  A  N        + +   D+
Sbjct: 188 ----NRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVL 215
            + +    +  +PLH+A +  + +   +L+  G +++  +    TPL  AA ++H  + +
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH-LEAV 60

Query: 216 MILLSH 221
             L+  
Sbjct: 61  KYLIKA 66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  147 bits (373), Expect = 1e-41
 Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
           N         L  AA     +T+ ALL+ +++    + K G++PLH A            
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELL 165

Query: 96  ----------DKNKRKIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
                      KN    L  A  HN+   ++ LL    +   +   +GY+PLH A     
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQ 224

Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
             +   L+Q+G      ++ G TPLH A +  + E V +LL+   + N     GLTPLHL
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

Query: 205 AASHSHSRDVLMILLSH 221
            A   H   V  +L+ H
Sbjct: 285 VAQEGH-VPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (371), Expect = 2e-41
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 17/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N  +      L  AA    ++  + LL + +  V+A  KD  +PLH A            
Sbjct: 41  NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARI--------- 90

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                 +  ++ LL+ ++   +     G++PLH A   GH   V  L++  A     T  
Sbjct: 91  ----GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G+TPLH A K+       +LL      NA    GLTPLH+A  H++  D++ +LL  
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN-LDIVKLLLPR 201

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  142 bits (361), Expect = 5e-40
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 17/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N + K+ +  L  AA    +  ++ LL++++   +     G++PLH A            
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAARE--------- 123

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                  +T+ ALL+ +++    + K G++PLH A   G   + ELL++  A       +
Sbjct: 124 ----GHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G TPLH A   NN + V +LL  G   ++    G TPLH+AA  +   +V   LL +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQY 234

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  140 bits (356), Expect = 3e-39
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 25/199 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
           +    N    L  AA+ N  +   +LL +  +  +A    G +PLH A            
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALL 264

Query: 96  ----------DKNKRKIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH 144
                     +K+    L   A+       + L+      VDA  + GY+PLH A + G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGN 323

Query: 145 ANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
             +V+ L+Q  AD    T  G++PLH A +  +T+ V +LL  G   N  ++ G TPL +
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

Query: 205 AASHSHSR--DVLMILLSH 221
           A    +    DVL ++   
Sbjct: 384 AKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (348), Expect = 4e-38
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 17/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N   KN    L  A  HN+   ++ LL    +   +   +GY+PLH A            
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQ--------- 222

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
               N  +   +LL    +  +A    G +PLH A   GHA +V LL+   A+       
Sbjct: 223 ----NQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G TPLH   +  +     VL+ +GV V+A T  G TPLH+A+ + +   ++  LL H
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN-IKLVKFLLQH 333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (331), Expect = 1e-35
 Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 15/144 (10%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
                + G +PLH A +                   ++ LL   ++  +  +    +PLH
Sbjct: 7   GGGGGESGLTPLHVASFM-------------GHLPIVKNLLQRGAS-PNVSNVKVETPLH 52

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
            A   GH  + + L+Q  A       D  TPLH A +  +T  V +LL    + N  T  
Sbjct: 53  MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112

Query: 198 GLTPLHLAASHSHSRDVLMILLSH 221
           G TPLH+AA   H  + ++ LL  
Sbjct: 113 GHTPLHIAAREGH-VETVLALLEK 135

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 1e-29
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 20/173 (11%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N  +K+    L   A+       + L+ H    VDA  + GY+PLH A +          
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHY--------- 321

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                + K ++ LL   +  V+A  K GYSPLH+A   GH +IV LL++ GA   + + D
Sbjct: 322 ----GNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376

Query: 165 GWTPLHSACKWNNTECV---IVLLNYGVDVNAQTNGGLTPLHLAASH-SHSRD 213
           G TPL  A +           V+ +    V       ++           S D
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSED 429

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 2e-16
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           G         G TPLH A    +   V  LL  G   N       TPLH+AA   H+ +V
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT-EV 62

Query: 215 LMILLSH 221
              LL +
Sbjct: 63  AKYLLQN 69

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 43/147 (29%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           +   +     L  A+ + + K ++ LL H +  V+A  K GYSPLH             +
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLH-------------Q 350

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV---------------- 148
           AA+   +  +  LL   ++  + V  DG +PL  A   G+ ++                 
Sbjct: 351 AAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 409

Query: 149 -----------ELLIQWGADTQKTTID 164
                      + ++    D  +  I 
Sbjct: 410 DKHRMSFPETVDEILDVSEDEGEELIS 436

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           G+        GLTPLH+A+   H   ++  LL      P++ +   E+   +A R+G
Sbjct: 4   GISGGGGGESGLTPLHVASFMGH-LPIVKNLLQR-GASPNVSNVKVETPLHMAARAG 58

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  139 bits (352), Expect = 9e-41
 Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N  D+     L  AA ++ S   + LL+  +   +  D  G +PLH A            
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAA------------ 65

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
               +     + L+   +T +DA   DG +PL  A       ++E LI   AD       
Sbjct: 66  -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           G + LH A   NN +  +VLL  G + + Q N   TPL LAA      +   +LL H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS-YETAKVLLDH 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  138 bits (351), Expect = 1e-40
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N QD   R  L  A   +     + L+ + +T +DA   DG +PL  A            
Sbjct: 52  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA------------ 99

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
            A       LE L++  +  V+AVD  G S LH A    + +   +L++ GA+       
Sbjct: 100 -ARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             TPL  A +  + E   VLL++  + +   +    P  +A    H  D++ +L  +
Sbjct: 158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH-HDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (310), Expect = 2e-34
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%)

Query: 68  EALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA 127
              +   ++L +  D+ G + LH              AA ++ S   + LL+  +   + 
Sbjct: 8   SDFIYQGASLHNQTDRTGETALHL-------------AARYSRSDAAKRLLEASAD-ANI 53

Query: 128 VDKDGYSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLN 186
            D  G +PLH A       + ++LI+  A D      DG TPL  A +      +  L+N
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
              DVNA  + G + LH AA+ ++  D  ++LL +
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNN-VDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 143 GHANIVELLIQWGADTQ-KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
               ++   I  GA    +T   G T LH A +++ ++    LL    D N Q N G TP
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 202 LHLAASHSHSRDVLMILLSH 221
           LH A S    + V  IL+ +
Sbjct: 62  LHAAVSADA-QGVFQILIRN 80

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  138 bits (351), Expect = 3e-40
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 20/181 (11%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTL---VDAVDKDGYSPLHRACYNDKNKRK 101
              D++ +     A EH     L ALLD  +     ++A + DG + LH A         
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT------ 126

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQK 160
                     +T++ LL+  +  +DAVD K G SPL  A  N   ++V+LL+Q GA+   
Sbjct: 127 -------ECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178

Query: 161 TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
               G + LHSA        V  L+  G D + +     TPL +A S     D+L    +
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV-IDILRGKAT 237

Query: 221 H 221
            
Sbjct: 238 R 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  127 bits (321), Expect = 7e-36
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 77  LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL---VDAVDKDGY 133
           +    D+DG +PLH A                 +   +  L++L       +D  +    
Sbjct: 1   MATRADEDGDTPLHIAVVQ-------------GNLPAVHRLVNLFQQGGRELDIYNNLRQ 47

Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG----V 189
           +PLH A      ++V LL+  GA        G T  H AC+  +  C+  LL+      +
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107

Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           D+ A+   GLT LH+A +    ++ + +LL  
Sbjct: 108 DLEARNYDGLTALHVAVNTEC-QETVQLLLER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 15/99 (15%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A E+N    ++ LL H +  V+A    G S LH A                     +  L
Sbjct: 157 AVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR-------------GLLPLVRTL 202

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
           +   +      +    +PL  A      +I+       A
Sbjct: 203 VRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  138 bits (350), Expect = 3e-40
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 17/178 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
              D      + +A ++   +    L++     V   DK+  + LH A  N         
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAIN--------- 52

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
               N    ++  +   +  VD +  D   +PLH A   GH ++V  L+++GAD      
Sbjct: 53  ----NRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           +G + +H A ++ +T  V  L+  G DV+     G+TPL  AA  +HS D   +LL+ 
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (320), Expect = 1e-35
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A        +  L+ + +     +D +G S +H A                  +  +  L
Sbjct: 83  ATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQF-------------GHTSIVAYL 128

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGH-ANIVELLIQWGAD-TQKTTIDGWTPLHSACKW 175
           +      VD +D++G +PL  A Y  H  +   LL+ +             T LH A   
Sbjct: 129 IAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            NT  + +LL  G +V+AQ   G + L LA    +   ++  L   
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN-VWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  125 bits (317), Expect = 2e-35
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
           +  +D      + +A                   +    L++     V   DK+  + LH
Sbjct: 2   MTHIDDYSTWDIVKATQY-------------GIYERCRELVEAGYD-VRQPDKENVTLLH 47

Query: 138 RACYNGHANIVELLIQWGADT-QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
            A  N   ++V+  I  GA   Q       TPLH A +  +   V+ L+ YG D +    
Sbjct: 48  WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107

Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
            G + +HLAA   H   ++  L++ 
Sbjct: 108 EGCSCIHLAAQFGH-TSIVAYLIAK 131

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.8 bits (250), Expect = 2e-25
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           +  D    + +  AA+   +  +  L+      VD +D++G +PL  A Y          
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRT-------- 153

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDK-DGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
               +       LL  + + V+  DK    + LH A   G+  ++ LL++ GA+     I
Sbjct: 154 ----HSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
            G + L  A +  N   +  L         
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEARQAKGY 238

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  138 bits (351), Expect = 3e-40
 Identities = 46/185 (24%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN-------------------DK 97
              E +    +   +   ++L +  D+ G + LH A                      D 
Sbjct: 29  SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 88

Query: 98  NKRKIL-EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
             R  L  A   +     + L+   +T +DA   DG +PL  A       ++E LI   A
Sbjct: 89  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148

Query: 157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLM 216
           D       G + LH A   NN +  +VLL  G + + Q N   TPL LAA      +   
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS-YETAK 207

Query: 217 ILLSH 221
           +LL H
Sbjct: 208 VLLDH 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  136 bits (345), Expect = 3e-39
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 16/177 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N QD   R  L  A   +     + L+ + +T +DA   DG +PL  A            
Sbjct: 84  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL--------- 134

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                    LE L++  +  V+AVD  G S LH A    + +   +L++ GA+       
Sbjct: 135 ----AVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             TPL  A +  + E   VLL++  + +   +    P  +A    H  D++ +L   
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH-HDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  131 bits (332), Expect = 2e-37
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
           V+    DG++PL  A  +           E +    +   +   ++L +  D+ G + LH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTN 196
            A     ++  + L++  AD       G TPLH+A   +      +L+     D++A+ +
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
            G TPL LAA  +    +L  L++ 
Sbjct: 123 DGTTPLILAARLAV-EGMLEDLINS 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  134 bits (339), Expect = 1e-39
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
             AA   D + +  LL  +    DA+++ G + L    +                     
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST--------------AIAL 52

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
            LL   ++  +  D  G SP+H A   G  + +++L++ GAD       G  P+H A + 
Sbjct: 53  ELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            +T  V  L     D++ +   GLTPL LA      +D++ IL  H
Sbjct: 112 GHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGA-QDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  122 bits (308), Expect = 6e-35
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT 162
             AA   D + +  LL  +    DA+++ G + L    + G   I   L++ GA      
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQD 65

Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHP 222
             G +P+H A +    + + VL+ +G DVN     G  P+HLA    H   V+  L +  
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH-TAVVSFLAAES 124

Query: 223 NVD 225
           ++ 
Sbjct: 125 DLH 127

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 95.2 bits (238), Expect = 1e-24
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 132 GYSPLHRACYNGHANIV-ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
               L  A   G    V  LL +           G T L     + +T   + LL  G  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            N Q   G +P+H AA      D L +L+ H
Sbjct: 61  PNVQDTSGTSPVHDAARTGF-LDTLKVLVEH 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.0 bits (157), Expect = 6e-13
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N QD +  + + +AA      TL+ L++H +  V+  D  G  P+H A         ++ 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQE--GHTAVVS 118

Query: 105 A-AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
             A  +D              +   D  G +PL  A   G  ++V++L 
Sbjct: 119 FLAAESD--------------LHRRDARGLTPLELALQRGAQDLVDILQ 153

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  135 bits (343), Expect = 3e-39
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 22/183 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N Q+  ++  L  A   N  +  EALL       +  D  G +PLH AC           
Sbjct: 39  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQ--------- 88

Query: 105 AAEHNDSKTLEALLD-----LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-T 158
                   ++  L          +++ A + +G++ LH A  +G+  IVELL+  GAD  
Sbjct: 89  ----GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
            +   +G T LH A    N + V +LL  G DVN  T  G +P  L         +   L
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS-TRIQQQL 203

Query: 219 LSH 221
              
Sbjct: 204 GQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  125 bits (316), Expect = 3e-35
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 80  AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
            + +DG S LH A  ++  K   +E             +  D   ++  +    +PLH A
Sbjct: 3   QLTEDGDSFLHLAIIHE-EKALTMEVIR---------QVKGDLAFLNFQNNLQQTPLHLA 52

Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD------VNA 193
                  I E L+  G D +     G TPLH AC+      V VL            + A
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112

Query: 194 QTNGGLTPLHLAASHSHSRDVLMILLSH 221
               G T LHLA+ H +   ++ +L+S 
Sbjct: 113 TNYNGHTCLHLASIHGY-LGIVELLVSL 139

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (310), Expect = 2e-34
 Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 28/186 (15%)

Query: 48  QDKNKRNIL-EAAEHNDSKT----LEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
             ++  + L  A  H +       +  +    +  ++  +    +PLH            
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA-FLNFQNNLQQTPLHL----------- 51

Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT 162
             A   N  +  EALL       +  D  G +PLH AC  G    V +L Q        +
Sbjct: 52  --AVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 163 I------DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG-GLTPLHLAASHSHSRDVL 215
           I      +G T LH A        V +L++ G DVNAQ    G T LHLA    +  D++
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN-PDLV 167

Query: 216 MILLSH 221
            +LL  
Sbjct: 168 SLLLKC 173

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  113 bits (285), Expect = 1e-30
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 21/172 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDH-----DSTLVDAVDKDGYSPLHRACYNDKNK 99
             +D      L  A E     ++  L          +++ A + +G++ LH A       
Sbjct: 72  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA------- 124

Query: 100 RKILEAAEHNDSKTLEALLDLDSTLVDAVDK-DGYSPLHRACYNGHANIVELLIQWGADT 158
                 + H     +E L+ L +  V+A +  +G + LH A    + ++V LL++ GAD 
Sbjct: 125 ------SIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
            + T  G++P        +T     L    ++                    
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 159 QKTTIDGWTPLHSACKWNNT----ECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           Q+ T DG + LH A          E +  +      +N Q N   TPLHLA   +   ++
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP-EI 60

Query: 215 LMILLSH 221
              LL  
Sbjct: 61  AEALLGA 67

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 15/92 (16%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A +  +   +  LL   +  V+ V   GYSP                      ++  + L
Sbjct: 158 AVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQ-------------LTWGRPSTRIQQQL 203

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
             L       +  +          +      E
Sbjct: 204 GQLTLE-NLQMLPESEDEESYDTESEFTEFTE 234

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  135 bits (342), Expect = 2e-38
 Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
           N  D      L  AA        E L+   +  V AV+ +G +PL  A            
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 96  ----DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
                 +     +  E    +     L+          K G + LH A   G+  +++LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 152 IQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS 211
           IQ   D      DGWTPLH+A  W   E   +L+    D+ A    G T   +A      
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL- 277

Query: 212 RDVLMILLSH 221
             +  +    
Sbjct: 278 GYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (315), Expect = 2e-34
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 18/179 (10%)

Query: 48  QDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAA 106
            D  ++   +      S+  LE  +            DG   L               A 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLA--------------AC 48

Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
              D++ +  LL+  +  ++  + DG + LH+AC + + ++V+ L++ GA+  +   +GW
Sbjct: 49  SSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW 107

Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
            PLH+A      +    L++ G  V A  + G TPL +A   +   ++L   ++   VD
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM-EELLQNEVNRQGVD 165

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  116 bits (293), Expect = 2e-31
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 43/203 (21%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
             +  +    L A    D++ +  LL+  +  ++  + DG + LH+AC +          
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACID---------- 83

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
              ++   ++ L++  +  ++  D +G+ PLH A   G+ +I E LI  GA       +G
Sbjct: 84  ---DNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 166 WTPLHSACKWNNTECVIVLLNY-GVDVNA--------------------------QTNGG 198
            TPL  A +    E +   +N  GVD+ A                              G
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199

Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
            T LH+AA+  +  +VL +L+  
Sbjct: 200 GTALHVAAAKGY-TEVLKLLIQA 221

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  105 bits (264), Expect = 4e-27
 Identities = 36/144 (25%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
           +   D           +                   LE  +            DG +   
Sbjct: 1   MKMADAKQKRNEQLKRWI-------------GSETDLEPPVVKRKK-TKVKFDDG-AVFL 45

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
            AC +G    V  L++ GAD     +DG T LH AC  +N + V  L+  G ++N   N 
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 198 GLTPLHLAASHSHSRDVLMILLSH 221
           G  PLH AAS  +  D+   L+S 
Sbjct: 106 GWIPLHAAASCGY-LDIAEYLISQ 128

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.5 bits (236), Expect = 4e-23
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 16/153 (10%)

Query: 46  NPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N Q  +     +  E    +   + L            K G + LH A            
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAK--------- 209

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                 ++ L+ L+      V+  D DG++PLH A + G      +L++   D +     
Sbjct: 210 ----GYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
           G T    A +        +     +  + +   
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  132 bits (334), Expect = 2e-38
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 17/183 (9%)

Query: 40  GIEDSRNPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKN 98
            ++  RN +D   R  L  A        ++ L+++    ++  D +G + L  A      
Sbjct: 23  NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWA------ 75

Query: 99  KRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
                   ++N     E LL   S  V+  D  G +PL  +   G++ +   L++ GA+ 
Sbjct: 76  -------VKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
               ++G TPL  A K+  +E V  LL  G D++A+   GLT    A      ++V+ I 
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR-QEVIKIF 186

Query: 219 LSH 221
              
Sbjct: 187 TEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  113 bits (285), Expect = 3e-31
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 21/141 (14%)

Query: 81  VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
           +DK+G                     E + ++ L+        L +  D    +PL  AC
Sbjct: 4   MDKNGEIVEK-------------IKDEKSINQNLDF-------LRNYRDSYNRTPLMVAC 43

Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
             G  N ++ L++     +   I+G T L  A K N       LL+ G +VN +   G T
Sbjct: 44  MLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103

Query: 201 PLHLAASHSHSRDVLMILLSH 221
           PL  +    +  ++   LL H
Sbjct: 104 PLMWSIIFGY-SEMSYFLLEH 123

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  130 bits (331), Expect = 3e-38
 Identities = 51/166 (30%), Positives = 71/166 (42%), Gaps = 16/166 (9%)

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           LEAA+  D +T++ L    S     ++    +PLH              AA +N    +E
Sbjct: 13  LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-------------FAAGYNRVSVVE 59

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
            LL   +  V A DK G  PLH AC  GH  + ELL++ GA      +  +TPLH A   
Sbjct: 60  YLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
              E   +LL +G D   +   G TPL L        D+  +L   
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVK--DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (315), Expect = 5e-36
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 81  VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
            + +    L              EAA+  D +T++ L  + S     ++    +PLH A 
Sbjct: 4   GNSEADRQLL-------------EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA 50

Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
                ++VE L+Q GAD       G  PLH+AC + + E   +L+ +G  VN       T
Sbjct: 51  GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110

Query: 201 PLHLAASHSHSRDVLMILLSH 221
           PLH AA+     ++  +LL H
Sbjct: 111 PLHEAAAKGK-YEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 62.0 bits (152), Expect = 3e-12
 Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 31/123 (25%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN-------------------DKN 98
           AA +N    +E LL H +  V A DK G  PLH AC                     D  
Sbjct: 49  AAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW 107

Query: 99  KRKIL-EAAEHNDSKTLEALL----DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ 153
           K   L EAA     +  + LL    D         ++DG +PL     +G  +I +LL  
Sbjct: 108 KFTPLHEAAAKGKYEICKLLLQHGAD-----PTKKNRDGNTPLDLVK-DGDTDIQDLLRG 161

Query: 154 WGA 156
             A
Sbjct: 162 DAA 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (331), Expect = 3e-38
 Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA       +  L+ + +  V+A D  G++PLH A +N                + +E L
Sbjct: 21  AARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFN-------------GHLEIVEVL 66

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +  V+AVD  G +PL  A   GH  IVE+L++ GAD     ++G TPLH A  + +
Sbjct: 67  LKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            E V VLL  G DVNAQ   G T   ++  + +  D+  IL   
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (290), Expect = 4e-32
 Identities = 50/140 (35%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
             D    L              EAA       +  L+   +  V+A D  G++PLH A +
Sbjct: 11  GSDLGKKLL-------------EAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAF 56

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
           NGH  IVE+L++ GAD       G TPL  A  + + E V VLL  G DVNA    G TP
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116

Query: 202 LHLAASHSHSRDVLMILLSH 221
           LHLAA   H  +++ +LL +
Sbjct: 117 LHLAAMFGH-LEIVEVLLKN 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  129 bits (327), Expect = 4e-38
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
           +  G + LH A                 D  ++E LL   S   +  D  G++PLH AC 
Sbjct: 7   NHRGETLLHIASIK-------------GDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACN 52

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
           +GH  +VELL+Q  A    T     +PLH A K  + + V +LL+YG   NA    GL P
Sbjct: 53  HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112

Query: 202 LHLAASHSHSRDVLMILLSHPNVD 225
           +      S  + +L++   + +  
Sbjct: 113 VDYTDDESM-KSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.0 bits (183), Expect = 7e-17
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           G D   T   G T LH A    +   V  LL  G D N + + G TPLH A +H H   V
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH-LKV 58

Query: 215 LMILLSH 221
           + +LL H
Sbjct: 59  VELLLQH 65

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  131 bits (331), Expect = 6e-38
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 29/201 (14%)

Query: 48  QDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYN----------- 95
           +      +LEAA   D+K   E L D     VD VD +G +PL+ A +N           
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 96  ---DKNKRK------ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
              D N +        L A     ++ L  +L   +  ++  ++ G + L  A   GH +
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 147 IVELLIQWG-ADTQKTTIDGWTPLHSACKWNN-----TECVIVLLNYGVDVNAQTNGGLT 200
            V+LL++ G  D       G+T L  A           + V +L+  G D + + N G T
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180

Query: 201 PLHLAASHSHSRDVLMILLSH 221
            +  A    +  ++  IL  +
Sbjct: 181 AMDYANQKGY-TEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  114 bits (287), Expect = 2e-31
 Identities = 37/145 (25%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
             +  + L  A              + +  K  E L D     VD VD +G +PL+ A +
Sbjct: 3   TYEVGALLEAA-------------NQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVH 48

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTNGGLT 200
           N    I + LI  GAD         +P   A     TE +  +L +   D+N     G  
Sbjct: 49  NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108

Query: 201 PLHLAASHSHSRDVLMILLSHPNVD 225
            L  AA   H  D + +LL     D
Sbjct: 109 ALIPAAEKGH-IDNVKLLLEDGRED 132

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 97.1 bits (243), Expect = 7e-25
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N Q+    +    A     ++ L  +L H +  ++  ++ G + L  A          ++
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH-----ID 120

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC-----YNGHANIVELLIQWGADTQ 159
             +         LL+     +D  +  GY+ L  A         + +IV+LL++ GAD  
Sbjct: 121 NVKL--------LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172

Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNY 187
                G T +  A +   TE   +L  Y
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILAQY 200

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  132 bits (335), Expect = 1e-37
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 16/177 (9%)

Query: 35  DDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACY 94
            D  +       P   +    +++  + +++      D     ++A + DG++PLH A  
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVA-- 165

Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD-GYSPLHRACYNGHANIVELLIQ 153
                        H D++ +  L D  +  ++  +   G +PLH A     A+++ELL++
Sbjct: 166 -----------VIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
            GAD       G TPL SA    N     +L  +G          L+P   + S S 
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  121 bits (307), Expect = 2e-33
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 32/193 (16%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
               ++    L  A  H     L+ LL        +D  +  G + LH A          
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL------- 55

Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT 162
                  ++ T+E L    +  V   ++ G++ LH AC         +L+Q      +  
Sbjct: 56  ------GEASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

Query: 163 IDGWTP--------------LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
            D +                   +      E      ++ + + A+   G TPLH+A  H
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 209 SHSRDVLMILLSH 221
               +++ +L   
Sbjct: 169 KD-AEMVRLLRDA 180

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (302), Expect = 1e-32
 Identities = 33/160 (20%), Positives = 47/160 (29%), Gaps = 28/160 (17%)

Query: 77  LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYS 134
           +   V +DG + LH A               H     L+ LL        +D  +  G +
Sbjct: 1   VFGYVTEDGDTALHLA-------------VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQT 47

Query: 135 PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
            LH A   G A+ VE L   GA        G T LH AC+     C  VLL         
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 195 TNGGL-------------TPLHLAASHSHSRDVLMILLSH 221
            +                 P  + +  +   +        
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  130 bits (328), Expect = 3e-37
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
             Q ++  N L EAA+  +   L   LD+    V+ +DK G + L+ AC+          
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHG--------- 116

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                    +E L    +  ++  +K G + LH A + G+A+IV+LL+  GA T    I+
Sbjct: 117 ----GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
                  A        +                       +    H
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  123 bits (310), Expect = 1e-34
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A    + +T + L   +   +  +     +   +     K +  ++ +            
Sbjct: 19  ALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTS--KGRTGLIPSN----------- 64

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
                  V    +   +PLH A   G+ + +   +            G T L+ AC   +
Sbjct: 65  ------YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH 118

Query: 178 TECVIVLL-NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            + V +L     +++N Q   G T LH AA   +  D++ +LL+ 
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY-ADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (286), Expect = 5e-31
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 20/144 (13%)

Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
            K G   + RA Y               + +T + L   +   +  +     +   +   
Sbjct: 9   VKPGQVKVFRALYT-------------FEPRTPDELYIEEGD-IIYITDMSDTNWWKGTS 54

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
            G   ++           +       PLH A K  N   +   L+  V VN     G T 
Sbjct: 55  KGRTGLIP-----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109

Query: 202 LHLAASHSHSRDVLMILLSHPNVD 225
           L+ A    H +D++ +L + PN++
Sbjct: 110 LYWACHGGH-KDIVEMLFTQPNIE 132

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 8/52 (15%), Positives = 11/52 (21%)

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
            K    G   +  A           L     D+   T+   T      S   
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  127 bits (323), Expect = 3e-37
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 18/165 (10%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA   D + L +LL ++   V+A +  G + L      +               +    L
Sbjct: 12  AAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNP--------------EIARRL 56

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +   D  D+ G++ +H A   G  + ++ L+++ AD      +G  PLH A K  +
Sbjct: 57  LLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 178 TECVIVLLNYG-VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
              V  L+ +   +V  + + G T   LA  +    +V+ ++ ++
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR-NEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (277), Expect = 2e-30
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 16/141 (11%)

Query: 81  VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
           + +   + L               AA   D + L +LL  +   V+A +  G + L    
Sbjct: 1   MAEPWGNELA-------------SAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK 46

Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT 200
             G+  I   L+  GA+       G+  +H A +    + +  LL +  DVN + N G  
Sbjct: 47  L-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

Query: 201 PLHLAASHSHSRDVLMILLSH 221
           PLHLAA   H   V+  L+ H
Sbjct: 106 PLHLAAKEGH-LRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 4e-16
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           + +D+    ++ +AA      TL+ LL+  +  V+  D +G  PLH A            
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLA------------ 110

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
            A+    + +E L+   ++ V   +  G +    A   G   +V L+   GA
Sbjct: 111 -AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  133 bits (337), Expect = 3e-37
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 16/177 (9%)

Query: 46  NPQDKNKRN-ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
               + K++ +LEAA   + + L ALL   +    A D    +PLH              
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH-------------L 64

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
           AA +N  + ++ LL   +  V A DK G  PLH AC  GH  + ELL++ GA      + 
Sbjct: 65  AAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            +TPLH A   N  E   +LL++G D       G + + +A +    R+ L      
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL-RERLTYEFKG 179

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  132 bits (335), Expect = 7e-37
 Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 16/183 (8%)

Query: 62  NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
              K+   L D  +       +     L  A            A   N+ K +  L  L+
Sbjct: 2   EFGKSALDLADPSAK-AVLTGEYKKDELLEA------------ARSGNEEKLMALLTPLN 48

Query: 122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV 181
                A D    +PLH A       IV+LL+Q GAD       G  PLH+AC + + E  
Sbjct: 49  VN-CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107

Query: 182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT 241
            +LL +G  VNA      TPLH AAS +   +V  +LLSH   DP +++   +SA ++A 
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNR-VEVCSLLLSH-GADPTLVNCHGKSAVDMAP 165

Query: 242 RSG 244
              
Sbjct: 166 TPE 168

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (331), Expect = 3e-36
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 51  NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND 110
              ++L+AA   D   ++  L  +        +   + LH A  +   KRK         
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRK--------- 227

Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
            +  E LL   +  V+  +KD  +PLH A    H +++E+L + GA        G T LH
Sbjct: 228 -QVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285

Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            A    + +   +LL+YG D +  +  G T   +        + +  +LS 
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN------EAVQQILSE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  125 bits (316), Expect = 4e-34
 Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 39/200 (19%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           +  D  K   L  AA +N  + ++ LL H +  V A DK G  PLH AC           
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSY--------- 101

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                  +  E LL   +  V+A+D   ++PLH A       +  LL+  GAD       
Sbjct: 102 ----GHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156

Query: 165 GWTPLHSACKWNNTECVIVLLNY---------------------GVDVNAQTNGGLTPLH 203
           G + +  A      E +                            +    Q     T LH
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH 216

Query: 204 LAASHSH--SRDVLMILLSH 221
            A +  H   + V  +LL  
Sbjct: 217 CAVASLHPKRKQVAELLLRK 236

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  107 bits (270), Expect = 2e-27
 Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 26/167 (15%)

Query: 46  NPQDKNKRNIL-EAAE--HNDSK-TLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRK 101
             Q ++    L  A    H   K   E LL   +  V+  +KD  +PLH A         
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVA--------- 254

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
               AE   +  +E L    +  ++A+D  G + LHRA   GH     LL+ +G+D    
Sbjct: 255 ----AERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
           ++ G+T           E V  +L+    +          L  A+  
Sbjct: 310 SLQGFTAAQMG-----NEAVQQILSESTPMRTSDVDY--RLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 23/133 (17%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N ++K+    L  AAE   +  +E L  H +  ++A+D  G + LHRA            
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRA------------ 287

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
            A     +T   LL   S     +   G++             V+ ++      + + +D
Sbjct: 288 -ALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDVD 340

Query: 165 GWTPLHSACKWNN 177
               L  A K  +
Sbjct: 341 Y--RLLEASKAGD 351

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (327), Expect = 6e-37
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 19/205 (9%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
             +D++ R  L  +      +    LL    +  L D  D  G++P H AC         
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV------- 82

Query: 103 LEAAEHNDSKTLEALLDLDS-TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
                  + + +++L D      ++ +   G + LH A       + + LI+ GA  +  
Sbjct: 83  ------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGV-DVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
                 PLH A    + + + +L   G   VN Q   G TPL  A +  H  D  ++L+ 
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH-GDAAVLLVE 195

Query: 221 HPNVDPHILSTSNESAREIATRSGI 245
               +  ++      A ++A    +
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQV 220

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  128 bits (324), Expect = 2e-36
 Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 18/172 (10%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A   N+   ++ LL    +L+   D+DG  PLH +                   +    L
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-------------QAHEITSFL 55

Query: 118 LD--LDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ--WGADTQKTTIDGWTPLHSAC 173
           L    +  L D  D  G++P H AC  G+  +V+ L       D  K T  G T LH A 
Sbjct: 56  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115

Query: 174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
                E    L+  G  V  +      PLH AAS      ++ +L       
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS-LKLIELLCGLGKSA 166

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 93.7 bits (234), Expect = 2e-23
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N         L  A      +  + L+++ ++ V   DK    PLHRA            
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASV--------- 150

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QWGADTQKTTI 163
                  K +E L  L  + V+  DK G++PL  A   GH +   LL+ ++GA+      
Sbjct: 151 ----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

Query: 164 DGWTPLHSACKWNNTECVI 182
            G      A      +  +
Sbjct: 207 KGAKAEDVALNEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 91.4 bits (228), Expect = 2e-22
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 132 GYSPLHRACYNGHANIV-ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
              PLH+AC       V ELL    +   +   DG  PLH +  +   E    LL+   +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 191 VNAQ---TNGGLTPLHLAASHSHSRDVLMILLSH 221
           VN      + G TP H+A S  +  +V+  L   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGN-LEVVKSLYDR 94

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  127 bits (322), Expect = 8e-37
 Identities = 42/171 (24%), Positives = 57/171 (33%), Gaps = 27/171 (15%)

Query: 55  ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
            L   +   S +            D V  +  +P                AA   D + L
Sbjct: 18  YLIEWKDGHSPSWVPSSYIA---AD-VVSEYETPWW-------------TAARKADEQAL 60

Query: 115 EALL---DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-TQKTTIDGWTPLH 170
             LL   D     VDAVD++G + L      G    V LL + GAD   +    G T LH
Sbjct: 61  SQLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115

Query: 171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            A  +   E V  L+  G D+  +   GLT L LA             +  
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-TTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (270), Expect = 4e-29
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 20/143 (13%)

Query: 80  AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
               +G         +               S +      +     D V  +  +P   A
Sbjct: 9   RTAGEGAMEYLIEWKD-------------GHSPSWVPSSYIA---AD-VVSEYETPWWTA 51

Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGG 198
                   +  L++   D      +G T L       + +CV +L   G D++ +   GG
Sbjct: 52  ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110

Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
           LT LH+AA +    +V+  L+  
Sbjct: 111 LTALHMAAGYVRP-EVVEALVEL 132

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  102 bits (257), Expect = 3e-27
 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA   D + L  LL+     VDAVD++G + L                      K +  L
Sbjct: 51  AARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGL-------------GSDKCVRLL 95

Query: 118 LDL--DSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
            +   D   +D  D + G + LH A       +VE L++ GAD +     G T L  A +
Sbjct: 96  AEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

Query: 175 WNNTECVIVLLNYGVDVNAQ 194
              T      + +G  +  +
Sbjct: 153 ILKTTPKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
           +G        K  ++   +       DV ++     TP   AA  +     L  LL   +
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKAD-EQALSQLLEDRD 68

Query: 224 VD 225
           VD
Sbjct: 69  VD 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  129 bits (328), Expect = 2e-36
 Identities = 47/212 (22%), Positives = 69/212 (32%), Gaps = 38/212 (17%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
             + KN       AA     K L+  L   +  V+  D  G++    A            
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 96  ----------DKNKRKILE-----------AAEHNDSKTLEALLDLDSTLVDAVDKDGYS 134
                      K K                AAE    + L+ LLD     V+A D  G +
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 135 PLHRACYNGHAN----IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGV 189
            L  A  +   +    I  LL+  GAD       G TPL  A +  +   V  LL    +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           ++N   + G T L LA      + +  +L   
Sbjct: 245 EINDTDSDGKTALLLAVELKL-KKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  120 bits (304), Expect = 6e-33
 Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 28/218 (12%)

Query: 49  DKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKD-GYSPLHRACYNDKNKRKILEAA 106
                ++L +A ++ D   ++ LL+  +  V+  +++ G++PLH A              
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQM----------- 49

Query: 107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGW 166
             +    +E LL   +       K+G +P   A   G   +++L +  GAD  +    G+
Sbjct: 50  --SREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106

Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTN----------GGLTPLHLAASHSHSRDVLM 216
           T    A  +   + +  L   G +VN +            GG T L  AA   H  +VL 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVLK 165

Query: 217 ILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE 254
           ILL     D +       +A   A  S     +     
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  107 bits (271), Expect = 3e-28
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 46  NPQDKNKRNILE-----------AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACY 94
           N + K K +              AAE    + L+ LLD     V+A D  G + L  A  
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-Q 153
           +  +   +              LLD  +  V+   + G +PL  A    H  +V+ L+ Q
Sbjct: 192 S-SDDSDVEAITHL--------LLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
              +   T  DG T L  A +    +   +L   G   +  
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  124 bits (315), Expect = 5e-36
 Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           LEAA       +  L+ + +      D  G SPLH A             A++    T E
Sbjct: 7   LEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLA-------------AQYGHFSTTE 51

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
            LL    +  DA  K   +PLH A   GHANIVE+L++ GAD     +   T LH A + 
Sbjct: 52  VLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
           N+ E V +L+ YG DV+ Q+    T   ++  + +
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  114 bits (287), Expect = 7e-32
 Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
           D    L              EAA       +  L+   +      D  G SPLH A   G
Sbjct: 1   DLGKKLL-------------EAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYG 45

Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
           H +  E+L++ G      T    TPLH A    +   V VLL +G DVNA+    +T LH
Sbjct: 46  HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105

Query: 204 LAASHSHSRDVLMILLSH 221
            A  H+H ++V+ +L+ +
Sbjct: 106 WATEHNH-QEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 91.7 bits (229), Expect = 2e-23
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 15/127 (11%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA++    T E LL    +  DA  K   +PLH A             A    +  +E L
Sbjct: 41  AAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMA-------------ASEGHANIVEVL 86

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +  V+A D    + LH A  + H  +VELLI++GAD    +    T    +    N
Sbjct: 87  LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145

Query: 178 TECVIVL 184
            +   +L
Sbjct: 146 EDLAEIL 152

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  122 bits (310), Expect = 1e-35
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
           +  +     + L  A                   +T+  LL+  +   +A+++ G  P+ 
Sbjct: 5   IHMLGGSSDAGLATAAAR-------------GQVETVRQLLEAGAD-PNALNRFGRRPIQ 50

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWT-PLHSACKWNNTECVIVLLNYGVDVNAQTN 196
                G A + ELL+  GA+         T P+H A +    + ++VL   G  ++    
Sbjct: 51  VMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

Query: 197 GGLTPLHLAASHSHSRDVLMILLSH 221
            G  P+ LA    H RD+   L + 
Sbjct: 110 WGRLPVDLAEEQGH-RDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  102 bits (256), Expect = 1e-27
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 22/149 (14%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           +    +    L  AA     +T+  LL+  +   +A+++ G  P+               
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMG--------- 55

Query: 105 AAEHNDSKTLEALLDL--DSTLVDAVDKDGY-SPLHRACYNGHANIVELLIQWGADTQKT 161
                     E LL    +    +  D      P+H A   G  + + +L + GA     
Sbjct: 56  ---SAQ--VAELLLLHGAE---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVD 190
              G  P+  A +  + +    L     D
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 4e-16
 Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
                         L +A      E V  LL  G D NA    G  P+ +    S    V
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA--QV 59

Query: 215 LMILLSH 221
             +LL H
Sbjct: 60  AELLLLH 66

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  127 bits (321), Expect = 2e-35
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 19/166 (11%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA   D+K ++ LL          D  G + L+              A +  + +T++  
Sbjct: 69  AATLEDTKIVKILLFSGLD-DSQFDDKGNTALY-------------YAVDSGNMQTVKLF 114

Query: 118 LDLDSTLVDAVDKDGYS-PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
           +  +   +    K G+    + A      +IV   +     T        + +H   K  
Sbjct: 115 VKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKNG 172

Query: 177 NTECVIVLLNYGVDVNAQTNGGLTP-LHLAASHSHSRDVLMILLSH 221
           + + +I+LL+Y    N   +    P + LA  +    ++L  L  +
Sbjct: 173 HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD-IEMLQALFKY 217

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  124 bits (314), Expect = 2e-34
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 56  LEAAEHNDSKTLEALL-DHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           L       SK L++ L   D       D  G+S  + A  +             N+ + +
Sbjct: 4   LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIAD-------------NNVRLV 47

Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
             LL+           +   PLH+A       IV++L+  G D  +    G T L+ A  
Sbjct: 48  CTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104

Query: 175 WNNTECVIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSH 221
             N + V + +     +      G  T  + A   +    ++   LS 
Sbjct: 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND-VSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (258), Expect = 2e-26
 Identities = 18/187 (9%), Positives = 55/187 (29%), Gaps = 31/187 (16%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYS-PLHRACYN-------- 95
           +  D      L  A +  + +T++  +  +   +    K G+    + A           
Sbjct: 89  SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 96  ------DKNKRKILE-----AAEHNDSKTLEALLDLDSTLVDAVDKDGYSP-LHRACYNG 143
                       IL        ++     +  LLD  ++  +  +   + P +  A  N 
Sbjct: 148 FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNK 206

Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH 203
              +++ L ++  +        ++        ++ E   +++   V+  + +      + 
Sbjct: 207 DIEMLQALFKYDIN-------IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

Query: 204 LAASHSH 210
                  
Sbjct: 260 KNNKLDE 266

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (326), Expect = 2e-35
 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTL--VDAVDKDGYSPLHRACYNDKNKRKI 102
              +K++R+ L +AA + D   +  +L+       ++ +D++G + L    +N    R  
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN--EGRDQ 250

Query: 103 LEAAEHNDSKTLEALLD-------LDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QW 154
           + +A+         L++         +   D+    G + LH A    +  IV+ L+ + 
Sbjct: 251 VASAKL--------LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           G++  K   DG TP+  A +    E V+ L+  G  V A      T   LA +++H  ++
Sbjct: 303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH-HNI 361

Query: 215 LMILLSH 221
           + I    
Sbjct: 362 VDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  125 bits (317), Expect = 4e-34
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 41  IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN----- 95
           I+  RN               N +  L      +  +    + +    LH          
Sbjct: 50  IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAIT 109

Query: 96  ------------DKNKRKIL-EAAEHNDSKTLEALLDLDSTL-------VDAVDKDGYSP 135
                        ++ R +L   A ++ ++  E L+  ++         V+A+D D  +P
Sbjct: 110 EPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169

Query: 136 LHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN---YGVDVN 192
           L  A       +V  L++ GAD         + LH A    +   ++ +LN      D+ 
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229

Query: 193 AQTNGGLTPLHLAASHSHSRDVLM--ILLSH 221
                G+T L + A +     V    +L+  
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (255), Expect = 3e-25
 Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 25/184 (13%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
             ++KN++N         S    +   +     + +      P  +   N          
Sbjct: 22  ENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG-----NDFL 76

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
            + N +            +    + +    LH     G   I E + +   +        
Sbjct: 77  GDFNHTN---------LQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR-HN 125

Query: 166 WTPLHSACKWNNTECVIVLLNY--------GVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
            T LH     ++ E    L+ +        G DVNA      TPL LA      R ++  
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-RRLVAY 184

Query: 218 LLSH 221
           L+  
Sbjct: 185 LMKA 188

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  121 bits (307), Expect = 4e-35
 Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 19/140 (13%)

Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACY 141
           +G +PLH A  N                + ++ LL+   D   V+A DK+G +PLH A  
Sbjct: 1   NGRTPLHLAARN-------------GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAAR 44

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
           NGH  +V+LL++ GAD      +G TPLH A +  + E V +LL  G DVNA+   G TP
Sbjct: 45  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104

Query: 202 LHLAASHSHSRDVLMILLSH 221
           LHLAA + H  +V+ +LL  
Sbjct: 105 LHLAARNGH-LEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.3 bits (249), Expect = 1e-26
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 19/133 (14%)

Query: 58  AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           AA +   + ++ LL+   D   V+A DK+G +PLH A  N            H +   ++
Sbjct: 9   AARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNG-----------HLE--VVK 52

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
            LL+  +  V+A DK+G +PLH A  NGH  +V+LL++ GAD      +G TPLH A + 
Sbjct: 53  LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111

Query: 176 NNTECVIVLLNYG 188
            + E V +LL  G
Sbjct: 112 GHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.1 bits (168), Expect = 8e-15
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 16/112 (14%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N +DKN R  L  AA +   + ++ LL+  +  V+A DK+G +PLH A  N       LE
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGH-----LE 82

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
             +         LL+  +  V+A DK+G +PLH A  NGH  +V+LL++ GA
Sbjct: 83  VVKL--------LLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  125 bits (315), Expect = 4e-35
 Identities = 41/170 (24%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           L   +   S +            D V  +  +P   A                 D + L 
Sbjct: 20  LIEWKDGHSPSWVPSSYIA---AD-VVSEYETPWWTAARK-------------ADEQALS 62

Query: 116 ALL---DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADT-QKTTIDGWTPLHS 171
            LL   D     VDAVD++G + L      G    V LL + GAD   +    G T LH 
Sbjct: 63  QLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117

Query: 172 ACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           A  +   E V  L+  G D+  +   GLT L LA             +  
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-TTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (275), Expect = 4e-29
 Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 40/187 (21%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA   D + L  LL+     VDAVD++G + L                      K +  L
Sbjct: 52  AARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGL-------------GSDKCVRLL 96

Query: 118 LDLDSTLVDAVD-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWN 176
            +  +  +D  D + G + LH A       +VE L++ GAD +     G T L  A +  
Sbjct: 97  AEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 155

Query: 177 NTECVIVLLNYG----------------------VDVNAQTNGGLTPLHLAASHSHSRDV 214
            T      + +G                       ++  +   G    +L        D 
Sbjct: 156 KTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG-GDC 214

Query: 215 LMILLSH 221
             +   H
Sbjct: 215 EWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  104 bits (262), Expect = 3e-27
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 85  GYSPLHRAC-YNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG 143
           G            +   + L   +   S +      +     D V  +  +P   A    
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA---AD-VVSEYETPWWTAARKA 56

Query: 144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGGLTPL 202
               +  L++   D      +G T L       + +CV +L   G D++ +   GGLT L
Sbjct: 57  DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115

Query: 203 HLAASHSHSRDVLMILLSH 221
           H+AA +    +V+  L+  
Sbjct: 116 HMAAGYVRP-EVVEALVEL 133

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
           +T  +G        K  ++   +       DV ++     TP   AA  +     L  LL
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKAD-EQALSQLL 65

Query: 220 SHPNVD 225
              +VD
Sbjct: 66  EDRDVD 71

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  124 bits (313), Expect = 6e-35
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 33/184 (17%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA+ ND + L  LL  +   V      G + LH              AA +++ +    L
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHI-------------AALYDNLEAAMVL 56

Query: 118 L----DLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-------------TQK 160
           +    +L    + +   +G + LH A  N + N+V  L+  GA                 
Sbjct: 57  MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 161 TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH---SRDVLMI 217
               G  PL  A    + E V +L+ +G D+ AQ + G T LH+     +   +  +  +
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

Query: 218 LLSH 221
           LLS+
Sbjct: 177 LLSY 180

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  111 bits (279), Expect = 6e-30
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 41/203 (20%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDH----DSTLVDAVDKDGYSPLHRACYNDKNKR 100
           + +       L  AA +++ +    L++         + +   +G + LH          
Sbjct: 31  HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH---------- 80

Query: 101 KILEAAEHNDSKTLEALL------------DLDSTLVDAVDKDGYSPLHRACYNGHANIV 148
               A  + +   + ALL             +       +   G  PL  A   G   IV
Sbjct: 81  ---IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137

Query: 149 ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI----VLLNYGVDVNAQT------NGG 198
            LLI+ GAD +     G T LH      N         +LL+Y    + ++      N G
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197

Query: 199 LTPLHLAASHSHSRDVLMILLSH 221
           LTP  LA    +   +   L+  
Sbjct: 198 LTPFKLAGVEGN-IVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 88.8 bits (221), Expect = 2e-21
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 132 GYSPLHRACYNGHANIV-ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
             SPL  A        + +LL   G +  +    G T LH A  ++N E  +VL+    +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 191 V-----NAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           +      ++   G T LH+A  + +  +++  LL+ 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQN-VNLVRALLAR 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  119 bits (302), Expect = 2e-34
 Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 15/136 (11%)

Query: 80  AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
            +          A  N              D   ++  +      V+   + G  PLH A
Sbjct: 2   PLGSMCDKEFMWALKN-------------GDLDEVKDYVAKGED-VNRTLEGGRKPLHYA 47

Query: 140 CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL 199
              G   I+E L+  GAD         TPL SA    +  CV +LL+ G D   +   GL
Sbjct: 48  ADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107

Query: 200 TPLHLAASHSHSRDVL 215
           T      + +  + +L
Sbjct: 108 TAFEATDNQAI-KALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 54.7 bits (133), Expect = 7e-10
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 20/107 (18%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N   +  R  L  AA+    + LE LL   +  ++A DK   +PL  A Y        + 
Sbjct: 34  NRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINAPDKHHITPLLSAVYEGH-----VS 87

Query: 105 AAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIVE 149
             +         LL    D         DG +            +++
Sbjct: 88  CVKL--------LLSKGAD---KTVKGPDGLTAFEATDNQAIKALLQ 123

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (313), Expect = 1e-33
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 35/196 (17%)

Query: 46  NPQDKNKRNIL-EAAE--HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
           + +    +  L           + ++ L+   ++   A DK   +PL RA          
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRA---------- 180

Query: 103 LEAAEHNDSKTLEALLDLDSTL----VDAVDKDGYSPLHRACYNGHANIVELLIQWGADT 158
               E  + + L+ ++D   +     +D  +K G S LH A      ++    ++ G D 
Sbjct: 181 ---MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLL-------------NYGVDVNAQTNGGLTPLHLA 205
                +   PL+ + +         LL             + G  V       L  +  A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 206 ASHSHSRDVLMILLSH 221
           A  S  ++VL +L   
Sbjct: 298 ADPSK-QEVLQLLQEK 312

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (312), Expect = 2e-33
 Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 34/213 (15%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTL----VDAVDKDGYSPLHRACYNDKNKR 100
             +DK     L  A E  + + L+ ++D   +     +D  +K G S LH A        
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI----- 221

Query: 101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ- 159
                   N        +++    V+  D +   PL+ +       + + L+Q       
Sbjct: 222 --------NWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 160 ------------KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS 207
                          +     + +A   +  E + +L     +V    N G         
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKK 332

Query: 208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIA 240
            +    V  + L+  +      S S   +  ++
Sbjct: 333 KAA-PAVKRMKLAP-SAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (281), Expect = 4e-29
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
           ++ D         D +    +H A   G  + V  LI+ G         G T LH ACK+
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
              +    L + G   +     G  P+HLA   +   D+++ L+  
Sbjct: 64  GCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANK-TDLVVALVEG 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (281), Expect = 4e-29
 Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 31/178 (17%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
              D      +  AA    +  +  L++   +     ++ G + LH AC           
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKF--------- 63

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                   T + L  +           G  P+H A      ++V  L++   +       
Sbjct: 64  ----GCVDTAKYLASVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------R 110

Query: 165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR-DVLMILLSH 221
           G  P     + +  E         +  + +   G T LH          +++ IL+  
Sbjct: 111 GQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  117 bits (297), Expect = 2e-33
 Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 27/174 (15%)

Query: 41  IEDSRNPQDKNKRNIL-EAAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDK 97
           +E +     +   + L  AA     + + ALL+   +    +A +  G  P+        
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMMMG-- 55

Query: 98  NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGY-SPLHRACYNGHANIVELLIQWGA 156
                            E LL   +   +  D      P+H A   G  + + +L + GA
Sbjct: 56  ----------SAR--VAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

Query: 157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
                   G  P+  A +  + +    L                   + A+   
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  106 bits (267), Expect = 7e-29
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
             +  +     L  A   G    V  L++ GA+       G  P+       +     +L
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL 63

Query: 185 LNYGVDVNAQTNGGLT-PLHLAASHSHSRDVLMILLSH 221
           L +G + N      LT P+H AA      D L++L   
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRA 100

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 23/94 (24%), Gaps = 24/94 (25%)

Query: 58  AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           AA      TL  L         +D  D  G  P+  A               H D     
Sbjct: 85  AAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELG-----------HRD--VAR 128

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
            L         A    G +        G ++I +
Sbjct: 129 YLRA------AAGGTRGSNHARIDAAEGPSDIPD 156

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  114 bits (288), Expect = 2e-32
 Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 14/122 (11%)

Query: 82  DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACY 141
            KDG +PLH A  N               ++ ++ LL   +  V+A  KDG +PLH A  
Sbjct: 6   SKDGNTPLHNAAKN-------------GHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAK 51

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP 201
           NGHA IV+LL+  GAD    + DG TP H A K  + E V +L   G DVNA++ G    
Sbjct: 52  NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

Query: 202 LH 203
            H
Sbjct: 112 HH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (284), Expect = 7e-32
 Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
            KDG +PLH A  NGHA  V+ L+  GAD    + DG TPLH A K  + E V +LL  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
            DVNA++  G TP HLA  + H  +++ +L + 
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGH-HEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.9 bits (118), Expect = 7e-08
 Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 49/126 (38%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILE 104
           N + K+    L  AA++  ++ ++ LL   +  V+A  KDG +                 
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNT----------------- 77

Query: 105 AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
                                         P H A  NGH  IV+LL   GAD    +  
Sbjct: 78  ------------------------------PEHLAKKNGHHEIVKLLDAKGADVNARSWG 107

Query: 165 GWTPLH 170
                H
Sbjct: 108 SSHHHH 113

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  114 bits (288), Expect = 3e-32
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 95  NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
           +D  K K+LEAA       +  L+   +  V+A D+ G +PL+ A  +GH  IVE+L++ 
Sbjct: 12  SDLGK-KLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GAD       G+TPLH A    + E   VLL +G DVNAQ   G T   ++  + +  D+
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN-EDL 128

Query: 215 LMILLSH 221
             IL   
Sbjct: 129 AEILQKL 135

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  117 bits (295), Expect = 4e-32
 Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 24/162 (14%)

Query: 82  DKDGYSPLHRACYN--------------DKNKRKI-----LEAAEHNDSKTLEALLDLDS 122
           +  G   L                          +     L+++   +   ++ ++    
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 123 TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI 182
                 + +G + LH A   GH  IV+ L+Q+G +      DGWTPLH A   NN +   
Sbjct: 62  D-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 183 VLLNYGVDVNAQTNGGL---TPLHLAASHSHSRDVLMILLSH 221
            L+  G  V A T   +             +       L   
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGY-TQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.0 bits (211), Expect = 6e-20
 Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 21/157 (13%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A     ++ ++ L+      V+A D DG++PLH A                N+ +  + L
Sbjct: 77  AVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASC-------------NNVQVCKFL 122

Query: 118 LDL--DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
           ++       +   D    +        G+    + L                 L      
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182

Query: 176 NNTECVIVLLNYGVDVNAQTNGGL--TPLHLAASHSH 210
           N+ E   + +  G  +               A  +  
Sbjct: 183 NDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  108 bits (274), Expect = 9e-31
 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
           +G +PLH A  NGH  +V+LL++ GAD      +G TPLH A +  + E V +LL  G D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           VNA+   G TPLHLAA + H  +V+ +LL  
Sbjct: 61  VNAKDKNGRTPLHLAARNGH-LEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.3 bits (223), Expect = 4e-23
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 18/107 (16%)

Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACY 141
           +G +PLH A  N            H +   ++ LL+   D   V+A DK+G +PLH A  
Sbjct: 1   NGRTPLHLAARNG-----------HLE--VVKLLLEAGAD---VNAKDKNGRTPLHLAAR 44

Query: 142 NGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
           NGH  +V+LL++ GAD      +G TPLH A +  + E V +LL  G
Sbjct: 45  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 2e-14
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 19/101 (18%)

Query: 58  AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           AA +   + ++ LL+   D   V+A DK+G +PLH A  N       LE  +        
Sbjct: 9   AARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGH-----LEVVK-------- 52

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA 156
            LL+  +  V+A DK+G +PLH A  NGH  +V+LL++ GA
Sbjct: 53  LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  111 bits (278), Expect = 1e-29
 Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 33/191 (17%)

Query: 51  NKRNILEAAEHNDSKTLEALLDH-------DSTLVDAVDKDGYSPLHRACYNDKNK---- 99
           ++  +         + L  LL++        +         G + L +A  N ++     
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 100 -RKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD- 157
              +L+  + +          L +         G+S LH A        V+LL++ GAD 
Sbjct: 62  IMPLLQIDKDSG-----NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 158 ------------TQKTTIDGWTPLHSACKWNNTECVIVLLNYGV---DVNAQTNGGLTPL 202
                              G  PL  A      + V  LL        + A  + G T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 203 HLAASHSHSRD 213
           H     + +  
Sbjct: 177 HALVMIADNSP 187

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.0 bits (239), Expect = 6e-24
 Identities = 39/215 (18%), Positives = 58/215 (26%), Gaps = 37/215 (17%)

Query: 41  IEDSRNPQDKNKRNILEAA----EHNDSKTLEALLDHDSTL----------VDAVDKDGY 86
           + DS   +    +  L  A    +   +  +  LL  D                    G+
Sbjct: 32  LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGH 91

Query: 87  SPLHRAC-YNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
           S LH A         K+L   E+     L A               G  PL  A      
Sbjct: 92  SALHIAIEKRSLQCVKLL--VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149

Query: 146 NIVELLIQWG---ADTQKTTIDGWTPLH----------------SACKWNNTECVIVLLN 186
           ++V  L++     A  + T   G T LH                        +    L  
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
                    + GLTPL LAA      ++   +L  
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGK-IEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 58  AAEHNDSKTLEALLDHDSTL--VDAVDKDGYSPLHRACYNDKNKRKI--LEAAEHNDSKT 113
           AA       +  LL++      ++A D  G + LH       N  +   L    ++    
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
           + A L     L +  +  G +PL  A   G   I   ++Q    
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 2e-29
 Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 29/212 (13%)

Query: 43  DSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTL------VDAVDKD-GYSPLHRACYN 95
             + P+  ++R+I +A   ++ + LE+LL             +  D + G + L +A  N
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 96  DKNKRKILEAAEH--NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ 153
             N +   +      + ++  ++L    +         G + LH A    +  +V LL++
Sbjct: 65  LHNGQ--NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 154 WGAD--------------TQKTTIDGWTPLHSACKWNNTECVIVLLNYG---VDVNAQTN 196
            GAD               +     G  PL  A   N    V  LL       D++A+ +
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

Query: 197 GGLTPLHLAASHSHSRDVLMILLSHPNVDPHI 228
            G T LH     +    V          +  +
Sbjct: 183 VGNTVLHALVEVAD-NTVDNTKFVTSMYNEIL 213

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 86.8 bits (215), Expect = 3e-20
 Identities = 30/174 (17%), Positives = 46/174 (26%), Gaps = 31/174 (17%)

Query: 58  AAEHNDSKTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRKIL-EAAEHNDSKTL 114
           A E  +   +  L+++  D   V A     +    +           L  AA  N    +
Sbjct: 108 AIERRNMTLVTLLVENGAD---VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

Query: 115 EALLDLDSTL--VDAVDKDGYSPLHRACYNGHANIVE----------------LLIQWGA 156
           + LL        + A D  G + LH         +                   L     
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224

Query: 157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
             + T   G TPL  A        +  +L   +             H AA H H
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 21/103 (20%)

Query: 44  SRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL 103
                +         + +N+   L A L     L +  ++ G +PL  A  + K     +
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK-----I 246

Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
               +        +L  +               H A ++ H +
Sbjct: 247 GVLAY--------ILQRE--------IHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNY-------GVDVNAQ-TNGGLTPLHLAA 206
            A  +   +     +  A   +N + +  LL +         D   +    G T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 207 SHSHS--RDVLMILLSH 221
            + H+   D + +LL  
Sbjct: 63  LNLHNGQNDTIALLLDV 79

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  108 bits (273), Expect = 5e-29
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 78  VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
                +   +PL            +L+AA   + + ++  +   +      +++G + LH
Sbjct: 11  PRKARRARLNPLV----------LLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALH 59

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-N 196
            A    + +IV+ LI  GA+       GWTPLH A   N+T   + L+ +G  + A T +
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 197 GGLTPLHLAASHSH-SRDVLMILLSH 221
            G T       +     D    L   
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADV 145

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.1 bits (245), Expect = 6e-25
 Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 18/180 (10%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A    +   ++ L+   +  V++ D  G++PLH A             A  ND+    AL
Sbjct: 61  AICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCA-------------ASCNDTVICMAL 106

Query: 118 LDLDSTLVDAVDKDGYSPLHRA--CYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
           +   + +      DG +   +      G+A+    L                 L      
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE 166

Query: 176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS-HPNVDPHILSTSNE 234
              E +       V V  +     T    AA H     V        P V P      + 
Sbjct: 167 FGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 148 VELLIQWGAD---TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL 204
           +  +++        ++  ++    L  A      E V   +    D +     G+T LH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 205 AASHSHSRDVLMILLSH 221
           A   ++   ++  L++ 
Sbjct: 61  AICGAN-YSIVDFLITA 76

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  108 bits (271), Expect = 8e-29
 Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
              D++ R  L  A     ++ +E LL      V+  D  G+SPLH A            
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 96  ----------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
                     ++N    L  A   +   +  +L       DA D    + +HRA   G+ 
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
            +V +L+ + A T     +G TPLH AC     E    L+  G  +  +     TPL +A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

Query: 206 ASHSHSRDVLMILLSH 221
                   +++  L+ 
Sbjct: 213 KGG---LGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  105 bits (264), Expect = 8e-28
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A      +  E +L   S L    D+D  + LH AC                 ++ +E L
Sbjct: 14  AYSGKLDELKERILADKS-LATRTDQDSRTALHWACSA-------------GHTEIVEFL 59

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L L    V+  D  G+SPLH A   G   IV+ L+  GA       +G TPLH A   N 
Sbjct: 60  LQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
            E  ++LL  G + +A+ +   T +H AA+  +   ++ ILL +     +I  T   +  
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN-LKMVHILLFY-KASTNIQDTEGNTPL 176

Query: 238 EIATRSG 244
            +A    
Sbjct: 177 HLACDEE 183

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.9 bits (236), Expect = 9e-24
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
                 + A       + E ++   +   +T  D  T LH AC   +TE V  LL  GV 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 191 VNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           VN + + G +PLH+AAS     +++  LL       + ++ +  +    A    
Sbjct: 66  VNDKDDAGWSPLHIAASAG-XDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKN 117

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
           +      + A      E    +L              T LH A S  H  +++  LL  
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQL 62

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 21/131 (16%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN---------- 95
           N  ++N    L  A   +   +  +L       DA D    + +HRA             
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 96  ---------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
                    D      L  A   +       L      +   +K+  +PL  A   G   
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLG 217

Query: 147 IVELLIQWGAD 157
           ++   +  G +
Sbjct: 218 LILKRLAEGEE 228

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  105 bits (265), Expect = 2e-28
 Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 30/184 (16%)

Query: 53  RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
           R +  AA     +    L +      D       + L+    N           +    K
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN---------NNDEARYK 56

Query: 113 TLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANI------VELLIQWGADTQKTTID 164
               L++   D   + +  K+G +        G  +I       ++ ++ GAD       
Sbjct: 57  ISMFLINKGAD---IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP 113

Query: 165 GWTPLHSACKWNNTECV-------IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
               +         +         ++    G+ +  +   GLT L            L +
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP-IALKM 172

Query: 218 LLSH 221
           +  +
Sbjct: 173 MEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  100 bits (251), Expect = 3e-26
 Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 14/164 (8%)

Query: 95  NDKNKRK-ILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
           N  ++ + +  AA     +    L +   +           Y  L          I   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 152 IQWGADTQKTTIDGWTPLHSACKWNN------TECVIVLLNYGVDVNAQTNGGLTPLHLA 205
           I  GAD +  T +G T      +         TE   + L  G D+ A        +   
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 206 ASHSHSRDVLMI-----LLSHPNVDPHILSTSNESAREIATRSG 244
             +    +  MI     + S   +   I      +A E   R  
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 99.7 bits (249), Expect = 5e-26
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 29/164 (17%)

Query: 49  DKNKRNILEAAEHNDS-----KTLEALLDH--DSTLVDAVDKDGYSPLHRACYNDKNKRK 101
              K NIL     N++     K    L++   D   + +  K+G +              
Sbjct: 35  SVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTTLFFPLFQG--GGND 89

Query: 102 ILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYSPLHRACYNGHANIVE-------LLI 152
           I    E       +  L+   D   + A+ K     + +  +N   +  E       +  
Sbjct: 90  ITGTTE-----LCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141

Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
           Q G         G T L    +      + ++ +Y    N + N
Sbjct: 142 QSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  103 bits (259), Expect = 8e-27
 Identities = 38/184 (20%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 51  NKRNILEAAEHNDSKTL----EALLDHDSTLVD---AVDKDGYSPLHRACYNDKNKRKIL 103
           N+  + +         L      LL H   L D        G + L +A  N    R   
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD------ 157
                + ++    + +  ++    V   G + LH A      + VELL++ GAD      
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 158 --------TQKTTIDGWTPLHSACKWNNTECVIVLLNYG---VDVNAQTNGGLTPLHLAA 206
                          G  PL  A   N    V  L   G    D+  Q + G T LH   
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 207 SHSH 210
           + + 
Sbjct: 185 AIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 83.7 bits (207), Expect = 3e-19
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 36/166 (21%)

Query: 98  NKRKILEAAEHNDSKTLEALLD-LDSTLVDAVDKD------GYSPLHRACYN---GHANI 147
           N+  + +         LE LL  L +      D++      G + L +A  N   G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 148 VELLIQWGADTQKTT-----------IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN 196
           + +L+     T                 G T LH A +      V +L+  G DV+AQ  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 197 G--------------GLTPLHLAASHSHSRDVLMILLSHPNVDPHI 228
           G              G  PL LAA  +    ++  L  + +    +
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQ-PHIVHYLTENGHKQADL 169

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 20/155 (12%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL-EAAEHNDSKTLEA 116
           A E      +E L++  +  V A  +  +                L  AA  N    +  
Sbjct: 100 AIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158

Query: 117 LLDLDSTL--VDAVDKDGYSPLHRACYNGH---------ANIVELLIQWGADTQKTTI-- 163
           L +       +   D  G + LH                  + +LL+   A     T   
Sbjct: 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218

Query: 164 -----DGWTPLHSACKWNNTECVIVLLNYGVDVNA 193
                DG +PL  A K         ++   +   A
Sbjct: 219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 97.6 bits (244), Expect = 4e-26
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 105 AAEHNDSKTLEALLDLDSTLVDA-VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
            + H+       L+        + +  D    L  A   G  + V +L+  GAD      
Sbjct: 1   GSSHHHHHHSSGLVP-----RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

Query: 164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
           +G TPLH A +  + E V +LL  G DV AQ   G T   ++  + +
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.1 bits (201), Expect = 8e-20
 Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
            + H+       L+   S     +  D    L  A             A       +  L
Sbjct: 1   GSSHHHHHHSSGLVPRGS----HMGSDLGKKLLEA-------------ARAGQDDEVRIL 43

Query: 118 LDL--DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
           +    D   V A DK+G +PLH A  NGH  +V+LL++ GAD       G T    +   
Sbjct: 44  MANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

Query: 176 NNTECVIVL 184
            N +   +L
Sbjct: 101 GNEDLAEIL 109

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 90.1 bits (223), Expect = 3e-21
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 4/147 (2%)

Query: 63  DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDS 122
           DS T EALLD+    +   D    + LH              AA++     +  ++   +
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-SAAAKYYLDILMGWIVKKQN 237

Query: 123 TLVDAVDKDGYSPLHRACYNGHANIVELL---IQWGADTQKTTIDGWTPLHSACKWNNTE 179
             + +   +  S  +        +I+E L               +G T L+ A +  N  
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

Query: 180 CVIVLLNYGVDVNAQTNGGLTPLHLAA 206
            V  LL+YG D       GL P+   A
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.0 bits (215), Expect = 3e-20
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
           N Q       L+     + + +   L++DS+  ++                        +
Sbjct: 57  NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV------------S 104

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
            +    +  +A  +    L   VD+ G +PLH      +  +V+ L++ G++       G
Sbjct: 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164

Query: 166 WTPLHSACKWNN---TECVIVLLNY-GVDVNAQTNGGLTPLHLAASHSHSR--------- 212
            + L  A K  N   +     LL+Y    +  + +   T LH     S            
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224

Query: 213 -DVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE 254
            D+LM  +      P    T+ + ++           + E ++
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.4 bits (203), Expect = 2e-18
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 30/211 (14%)

Query: 47  PQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
           P D++    L       + + ++ L+ H S      D  G S L +A  +  N       
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNY------ 178

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH------------ANIVELLIQ 153
               DS T EALLD     +   D    + LH                     ++  +++
Sbjct: 179 ----DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 154 WGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY----GVDVNAQTNGGLTPLHLAASHS 209
                 ++  +      +       + ++  L+        +NAQ + G T L++AA   
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 210 HSRDVLMILLSHPNVDPHILSTSNESAREIA 240
           +   ++  LL +   DP I + S     +  
Sbjct: 295 N-ISIVDALLDY-GADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.4 bits (172), Expect = 3e-14
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 46  NPQDKNKRNIL--EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL 103
             +D   R IL         +    A   +   L+  + K    P+       ++K    
Sbjct: 195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 254

Query: 104 EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI 163
                +       L  + + +++A D +G + L+ A   G+ +IV+ L+ +GAD      
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

Query: 164 DGWTPLHSA 172
            G  P+   
Sbjct: 315 SGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 29/243 (11%), Positives = 61/243 (25%), Gaps = 30/243 (12%)

Query: 2   SDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEH 61
           +         E+  +L+  ++   F   Q      +      +      N++    + + 
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 62  NDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD 121
              +  +A  +    L   VD+ G +PLH                   + + ++ L+   
Sbjct: 108 LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-------------ANLELVKHLVKHG 154

Query: 122 STLVDAVDKDGYSPLHRACYNGHA----NIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           S      D  G S L +A  + +         LL               T LH     + 
Sbjct: 155 SN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213

Query: 178 TECVIVLLNYGVDV------------NAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD 225
                    Y +D+                           +      +L  L     + 
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273

Query: 226 PHI 228
             +
Sbjct: 274 NML 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 78.9 bits (194), Expect = 3e-17
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 131 DGYSPLHRACYNGHAN---IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY 187
                LH A    +     +V+ +IQ G        DG T LH A  +N  +C+ +LL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
              V      G T L +A    H     ++  +   
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 11/120 (9%)

Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTI------DGWTPLHSACKWNNTECVIV---L 184
             L  A  N     V      G D  +              LH A K  N   + +   +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           +  G  ++A+   G T LH AA ++   D L +LL         ++ + E+A +IA +  
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQP-DCLKLLLKG-RALVGTVNEAGETALDIARKKH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 30  QVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEA--LLDHDSTLVDAVDKDGYS 87
           +  A   D        + Q   +  +  A +  +  +L     +  +   +DA   DG +
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228

Query: 88  PLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI 147
            LH A   ++      +  +         LL     LV  V++ G + L  A    H   
Sbjct: 229 ALHYAALYNQ-----PDCLK---------LLLKGRALVGTVNEAGETALDIARKKHHKEC 274

Query: 148 VELLIQ 153
            ELL Q
Sbjct: 275 EELLEQ 280

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 164 DGWTPLHSACKWNNTECVIV---LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS 220
                LH A K  N   + +   ++  G  ++A+   G T LH AA ++   D L +LL 
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP-DCLKLLLK 228

Query: 221 HPNVDPHILSTSNESAREIATRSGIH 246
                   ++ + E+A +IA +    
Sbjct: 229 G-RALVGTVNEAGETALDIARKKHHK 253

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.6 bits (188), Expect = 1e-16
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 129 DKDGYSPLHRACYNGHAN---IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL 185
            +   + LH A  +       IV+ L+Q   +  K T  G T LH  C  +N EC+ +LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL-------SHPNVD 225
                +      G TPL +A    H     ++         SH +V+
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 16/152 (10%)

Query: 41  IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAV-----DKDGYSPLHRACYN 95
                        ++ EA +  D   L         L + +      +   + LH A   
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV-- 177

Query: 96  DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
                    + +      ++  L  +S  +D     G + LH  C   +A  ++LL++  
Sbjct: 178 --------RSVDRTSLHIVD-FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 156 ADTQKTTIDGWTPLHSACKWNNTECVIVLLNY 187
           A  +     G TPL  A +  +  C  +L   
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 25/95 (26%), Positives = 43/95 (45%)

Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
            +D  +PL +A         E L+Q GA+  +    G  PLH A    +T    + L  G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291

Query: 189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPN 223
            D+ A+ + G  PL +A   +++  V ++ L+   
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.3 bits (140), Expect = 5e-10
 Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 5/167 (2%)

Query: 81  VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC 140
           + K       R        +  +        +        +    D       + L RA 
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207

Query: 141 -YNGHANIVELLIQWGADTQKTT--IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG 197
            +      +   +  GAD        D  TPL  A   N+      LL  G +VN   + 
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267

Query: 198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
           G  PLH A    H+  +  + L     D     +       IA  + 
Sbjct: 268 GRGPLHHATILGHT-GLACLFLKR-GADLGARDSEGRDPLTIAMETA 312

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 15/185 (8%)

Query: 2   SDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEH 61
             +           + Q  +        +  +         +              +   
Sbjct: 151 LPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHP 210

Query: 62  NDSKTLEALLDHDSTLVDAV-DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
               T+   L H + +      +D  +PL +A                 +S      L  
Sbjct: 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQAT--------------AANSLLACEFLLQ 256

Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           +   V+  D  G  PLH A   GH  +  L ++ GAD      +G  PL  A +  N + 
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316

Query: 181 VIVLL 185
           V +L 
Sbjct: 317 VTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 14/105 (13%)

Query: 49  DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEH 108
            ++    L  A   +S      L  +   V+  D  G  PLH A          L     
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291

Query: 109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ 153
            D              + A D +G  PL  A    +A+IV LL  
Sbjct: 292 AD--------------LGARDSEGRDPLTIAMETANADIVTLLRL 322

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 23/179 (12%), Positives = 50/179 (27%), Gaps = 11/179 (6%)

Query: 68  EALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA 127
             +  ++ +L+    K+          N +  R++L     + ++  + L     +    
Sbjct: 32  HFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLW----SDAHK 87

Query: 128 VDKDGYSPLHRACYNGHAN---IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
                      A   G ++    + LL+      +    + +     A +  +   +  L
Sbjct: 88  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 185 LNYGVDVNA--QTNGGLTPLHLAASHSHSRDVLMILLSH-PNVDPHILSTSNESAREIA 240
                                LAA + H   VL  L    P     ++   N  A   A
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHL-HVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 43/232 (18%)

Query: 36  DDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLE---ALLDHDSTLVDAVDKDGYSPLHRA 92
           +      D+     K++     AA    S  L+    LL  D  +V  +  + Y     A
Sbjct: 77  NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVIQAENYQAFRLA 135

Query: 93  CYN--------------DKNKRKILE--------AAEHNDSKTLEALLDLDSTLVDAV-- 128
             N               +    I          AAE+     L  L +L  T   A+  
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195

Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSAC-----------KWNN 177
            ++ Y+    A   GH N++  L+          I  +                  K  +
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255

Query: 178 TECVIVLLNYGVDV--NAQTNGGLTPLHLAASHSHSR--DVLMILLSHPNVD 225
               +   +   D+   ++   G   L      +     D +  LLS P + 
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 129 DKDGYSPLHRACYNGHANIVELL--------IQWGADTQKTTIDGWTPLHSACKWNNTEC 180
              G+  L          +++ +        I+  A T     D    L  A +  N   
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 334

Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             +LL+    +           ++  +     D+  + L H
Sbjct: 335 CALLLSIPSVLALTKA---NNYYINETGGRL-DLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.6 bits (131), Expect = 8e-09
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 11/118 (9%)

Query: 72  DHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDS-KTLEALLDLDSTLVDAVDK 130
                +  +    G+  L       +N   +L+      S   ++AL          +  
Sbjct: 265 GVFDLVTKSECLQGFYMLRNLI--RRNDEVLLDDIRFLLSIPGIKALAP-----TATIPG 317

Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
           D    L  A   G+     LL+   +    T  + +   +        +   V L + 
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTKANNY---YINETGGRLDLRAVALEHH 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.2e-38  Score=247.35  Aligned_cols=207  Identities=21%  Similarity=0.285  Sum_probs=186.2

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhh
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEH  108 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~  108 (265)
                      ..+.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..++                    ...+++.|+..
T Consensus         9 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A            9 QNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             CCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            4466888888888888888888887 77888888888888888887654                    24688888999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q psy17862        109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG  188 (265)
Q Consensus       109 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g  188 (265)
                      |+.+++++|+..++..++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  167 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK  167 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999766888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhh
Q psy17862        189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       189 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      ++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+|+|+..|+...+..+++...+
T Consensus       168 ~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d  235 (237)
T 3b7b_A          168 CDLHAVNIHGDSPLHIAARENRY-DCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD  235 (237)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCH-hHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998 788888887 899999999999999999999988888888776554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-37  Score=248.40  Aligned_cols=197  Identities=26%  Similarity=0.271  Sum_probs=181.0

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      .+..+.||||+|+..|+.++|++|++. |++++..|..|.||||+|             +..++.+++++|+..++..++
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~~~~~~~~  118 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAA-------------VSADAQGVFQILIRNRATDLD  118 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHHTCHHHHHHHHHSTTSCTT
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-------------HHcCCHHHHHHHHHcCCCCcc
Confidence            356788999999999999999999998 899999999999999999             678999999999997666888


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus       119 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  198 (253)
T 1yyh_A          119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA  198 (253)
T ss_dssp             CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhhc
Q psy17862        207 SHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNN  259 (265)
Q Consensus       207 ~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  259 (265)
                      ..|+. +++++|+++ |++++.+|..|.||+++|++.|+.+++..+.....+.
T Consensus       199 ~~~~~-~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          199 REGSY-ETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             HHTCH-HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred             HCCCH-HHHHHHHHc-CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence            99998 789999998 8999999999999999999999777777776655443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.9e-37  Score=240.57  Aligned_cols=194  Identities=27%  Similarity=0.280  Sum_probs=182.9

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      +..+.||||+|+..|+.++|++|++. +.+++..|..|.||||+|             +..++.+++++|+..++..++.
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~~~~~~~~~   87 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAA-------------VSADAQGVFQILIRNRATDLDA   87 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHHBTTSCTTC
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHH-------------HHcCCHHHHHHHHHcCCCCccc
Confidence            56788999999999999999999998 889999999999999999             6789999999999977768888


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      .+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  167 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR  167 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       208 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      .|+. +++++|+++ |++++.+|..|.||+++|++.|+.+.++.|++.-.
T Consensus       168 ~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          168 EGSY-ETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HTCH-HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCH-HHHHHHHHc-CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            9998 788999988 89999999999999999999998888888877644

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=255.82  Aligned_cols=217  Identities=27%  Similarity=0.373  Sum_probs=165.5

Q ss_pred             HHHHHHHHHhhcCceeeeeeecccCc--cccccc-CCCcCCCCcccHHHHHhcCChH-HHHHhhccCCCccccCCCCCCc
Q psy17862         12 EKMQQLQESIRDGSFNIGQVSAWDDD--VVGIED-SRNPQDKNKRNILEAAEHNDSK-TLEALLDHDSTLVDAVDKDGYS   87 (265)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~A~~~g~~~-~v~~ll~~~~~~~~~~d~~g~t   87 (265)
                      +.++.|..|++.|++++.....-...  ...... ....+..+.+||++|+..+..+ ++++|+.. |+++|..|.+|+|
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~T   88 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSS   88 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C-CCCTTCCCTTSCC
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCC
Confidence            56788999999999765433211100  001111 1223345679999999988765 67777776 9999999999999


Q ss_pred             HHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCh
Q psy17862         88 PLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWT  167 (265)
Q Consensus        88 pl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  167 (265)
                      |||+|             +..|+.+++++|+. .+.+++..+..|.||+++|+..++.+++++|+++|++++.+|..|.|
T Consensus        89 pLh~A-------------~~~g~~~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~T  154 (269)
T 4b93_B           89 PLHVA-------------ALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT  154 (269)
T ss_dssp             HHHHH-------------HHTTCTTHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             HHHHH-------------HHcCcHHHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCC
Confidence            99999             67899999999998 57888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCC
Q psy17862        168 PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGI  245 (265)
Q Consensus       168 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~  245 (265)
                      |||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+. +++++|+++ |+|++++|..|+||||+|++.++
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV-FVVELLLLH-GASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH-HHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999998 788999987 89999999999999999998875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-37  Score=245.62  Aligned_cols=205  Identities=24%  Similarity=0.295  Sum_probs=160.5

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhc---cCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHH
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLD---HDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEA  105 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a  105 (265)
                      +.+.||||+|+..|+.++|++|++   ..+.+++..|..|.||||+|+..++                    ...+++.|
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A   86 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   86 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            445667777777777777776665   2466666666667777777765443                    23466666


Q ss_pred             HhhCCHHHHHHHHhcCC---CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHH
Q psy17862        106 AEHNDSKTLEALLDLDS---TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSACKWNNTECV  181 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v  181 (265)
                      +..++.+++++|+....   ..++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+++
T Consensus        87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (241)
T 1k1a_A           87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  166 (241)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence            88888999999988543   2667778888999999999999999999999998888887 7788999999999999999


Q ss_pred             HHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        182 IVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       182 ~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ++|+++|++++.++..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+..|+.+.++.++.+
T Consensus       167 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          167 QLLLQHGANVNAQMYSGSSALHSASGRGLL-PLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCH-HHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHhc-CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            999999999998898899999999998887 688888887 888999999999999999998877777776654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-36  Score=243.27  Aligned_cols=237  Identities=21%  Similarity=0.225  Sum_probs=203.7

Q ss_pred             HHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHH
Q psy17862         14 MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRAC   93 (265)
Q Consensus        14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~   93 (265)
                      ...|..|++.|+++......  +  .+...+......+.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll--~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLL--E--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH--H--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHH--H--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHH
Confidence            35677888888764433221  1  11122222345678999999999999999999998 8899999999999999999


Q ss_pred             HcCc--------------------CchHHHHHHhhCCHHHHHHHHhcCCCCcccC----------CCCCChHHHHHHHcC
Q psy17862         94 YNDK--------------------NKRKILEAAEHNDSKTLEALLDLDSTLVDAV----------DKDGYSPLHRACYNG  143 (265)
Q Consensus        94 ~~~~--------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----------~~~g~t~l~~a~~~~  143 (265)
                      ..++                    ...+++.|+..++.+++++|+. .+..++..          +..|.||||+|+..|
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            8764                    3479999999999999999999 46677665          778999999999999


Q ss_pred             CHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHH
Q psy17862        144 HANIVELLIQW-GADTQKTTIDGWTPLHSACKWNN----TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL  218 (265)
Q Consensus       144 ~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~----~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L  218 (265)
                      +.+++++|++. |++++..+..|.||||+|+..+.    .+++++|++.|++++.++..|.||||+|+..|+. +++++|
T Consensus       160 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~L  238 (285)
T 1wdy_A          160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL-GLVQRL  238 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH-HHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH-HHHHHH
Confidence            99999999998 99999999999999999999999    9999999999999999999999999999999998 788888


Q ss_pred             hhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        219 LSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       219 ~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      ++..|++++.+|..|.||||+|++.|+.+.++.|++.-.
T Consensus       239 l~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            885699999999999999999999999888888887643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.8e-37  Score=239.54  Aligned_cols=218  Identities=22%  Similarity=0.265  Sum_probs=183.2

Q ss_pred             HHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHc
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN   95 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~   95 (265)
                      .|..|++.|+++........    +.......+..+.||||+|+..|+.+++++|++. +.+++..|..|.||||+|   
T Consensus         9 ~l~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A---   80 (231)
T 3aji_A            9 MICNLAYSGKLDELKERILA----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIA---   80 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH----CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHH---
T ss_pred             hHHHHHHhCCHHHHHHHHHh----chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHH---
Confidence            35667777775433222111    1111223345677888899999999999988887 788888888889999988   


Q ss_pred             CcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc
Q psy17862         96 DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW  175 (265)
Q Consensus        96 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  175 (265)
                                +..++.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..
T Consensus        81 ----------~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           81 ----------ASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             ----------HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ----------HHcCHHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence                      67899999999999 5788899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       176 ~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      ++.+++++|++.|++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+..++...++.|++
T Consensus       150 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV-EEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCH-HHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            999999999999999999999999999999999998 788999988 89999999999999999998875444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.8e-37  Score=259.89  Aligned_cols=206  Identities=19%  Similarity=0.262  Sum_probs=189.0

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc------------------CchHHHHHHhh
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK------------------NKRKILEAAEH  108 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~------------------~~~~l~~a~~~  108 (265)
                      .+..+.|+||+|+..|+.++|++|++. |++++..|..|.||||+|+..++                  ...+++.|+..
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~   94 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMA   94 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence            345678999999999999999999988 88999999999999999998764                  45799999999


Q ss_pred             CCHHHHHHHHhcC---CCCccc-----------------CCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCC
Q psy17862        109 NDSKTLEALLDLD---STLVDA-----------------VDKDGYSPLHRACYNG--HANIVELLIQWGADTQKTTIDGW  166 (265)
Q Consensus       109 ~~~~~~~~ll~~~---~~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~g~  166 (265)
                      |+.+++++|++..   +..++.                 .+..|.||||+|+..|  +.+++++|+++|++++..+..|.
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~  174 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE  174 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence            9999999999851   444444                 7778999999999999  99999999999999999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCC-----ccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHh
Q psy17862        167 TPLHSACKWNNTECVIVLLNYGVD-----VNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT  241 (265)
Q Consensus       167 t~l~~a~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~  241 (265)
                      ||||+|+..++.+++++|++.|++     ++.++..|+||||+|+..|+. +++++|+++ |++++..|..|.||||+|+
T Consensus       175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~-gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE-DVAMRFVEM-GIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH-HHHHHHHTT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH-HHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999998     999999999999999999998 799999987 8999999999999999999


Q ss_pred             hcCCchhhhhcchh
Q psy17862        242 RSGIHYGLFETIEP  255 (265)
Q Consensus       242 ~~~~~~~~~~ll~~  255 (265)
                      ..|+.+.++.|++.
T Consensus       253 ~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          253 RAAMVLLTKELLQK  266 (364)
T ss_dssp             HTCCHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHc
Confidence            99999999999886

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.5e-36  Score=232.29  Aligned_cols=192  Identities=25%  Similarity=0.310  Sum_probs=178.7

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      +.+.++|+.|+..|+.+.+++|+...+.+++..|..|.||||+|             +..|+.+++++|++ .|.+++..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~   68 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-------------VHNNDIEIAKALID-RGADINLQ   68 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCC
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCCC
Confidence            45789999999999999999999997879999999999999999             67899999999999 58899999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCcHHHHHH
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLI-QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpL~~a~  206 (265)
                      +..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..++.+++++|++.| ++++.++..|.||||+|+
T Consensus        69 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  148 (201)
T 3hra_A           69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV  148 (201)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH
Confidence            999999999999999999999999 556799999999999999999999999999999999 999999999999999999


Q ss_pred             hCCC----hHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        207 SHSH----SRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       207 ~~~~----~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ..+.    ..+++++|+++ |++++.+|..|.||||+|+..|+.+.++.|++.
T Consensus       149 ~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          149 GLREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HSSCCSHHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HhccchhhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            9987    13899999998 899999999999999999999988888887753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-36  Score=245.74  Aligned_cols=191  Identities=26%  Similarity=0.274  Sum_probs=121.7

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCc---cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTL---VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL  124 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  124 (265)
                      +..+.||||+|+..|+.++|++|++. +.+   ++..|..|.||||+|             +..|+.+++++|++ .|.+
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~ga~   70 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLA-------------AILGEASTVEKLYA-AGAG   70 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHH-------------HHHTCHHHHHHHHH-TTCC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCC
Confidence            34567888888888888888888876 444   777888888888888             44555666666665 3555


Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----------------------------------------------
Q psy17862        125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-----------------------------------------------  157 (265)
Q Consensus       125 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------  157 (265)
                      ++..+..|.||||+|+..|+.+++++|+++++.                                               
T Consensus        71 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (282)
T 1oy3_D           71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (282)
T ss_dssp             SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred             CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence            555666666666666666666666666655433                                               


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCC-CCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccH
Q psy17862        158 TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG-GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA  236 (265)
Q Consensus       158 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~  236 (265)
                      ++..+..|.||||+|+..++.+++++|+++|++++.++.. |+||||+|+..|+. +++++|+++ |++++.+|..|.||
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~-gad~~~~d~~g~tp  228 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA-SVLELLLKA-GADPTARMYGGRTP  228 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCH-HHHHHHHHc-CCCCcccccCCCCH
Confidence            3444555666666666666666666666666666655533 66666666666655 455555555 56666666666666


Q ss_pred             HHHHhhcCCchhhhhcchh
Q psy17862        237 REIATRSGIHYGLFETIEP  255 (265)
Q Consensus       237 l~~a~~~~~~~~~~~ll~~  255 (265)
                      ||+|+..|+.+.++.|++.
T Consensus       229 L~~A~~~~~~~~v~~Ll~~  247 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAH  247 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHT
T ss_pred             HHHHHHcCCcHHHHHHHHc
Confidence            6666666655555555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=244.03  Aligned_cols=207  Identities=25%  Similarity=0.328  Sum_probs=172.8

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHH
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAA  106 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~  106 (265)
                      .+..+.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+..++                    ...+++.|+
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            445678999999999999999999998 88999999999999999988754                    346889999


Q ss_pred             hhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy17862        107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN  186 (265)
Q Consensus       107 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~  186 (265)
                      ..++.+++++|+. .+.+++.. ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++
T Consensus       134 ~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          134 VSGSWDCVNLLLQ-HGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHTCHHHHHHHHH-TTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHH-CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            9999999999988 45565543 448899999999999999999999999998888899999999999999999999999


Q ss_pred             cCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhhccC
Q psy17862        187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLS  261 (265)
Q Consensus       187 ~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  261 (265)
                      .|++++. +..|.||||+|+..|+. +++++|+++ |++++.+|..|+|||++|+.  +...++.|++..-..++
T Consensus       212 ~ga~~~~-~~~g~t~L~~A~~~~~~-~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          212 SGADVNQ-GKGQDSPLHAVVRTASE-ELACLLMDF-GADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TTCCTTC-CBTTBCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHHC-----
T ss_pred             CCCCCCC-CCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHhhccCCC
Confidence            9988885 78889999999999887 788888887 88999999999999999983  36777777776444444

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.5e-36  Score=223.91  Aligned_cols=159  Identities=37%  Similarity=0.585  Sum_probs=147.2

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD  131 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  131 (265)
                      +++|+.|++.|+.++|+.||+. |+++|.+|..|+||||+|             +..++.++++.|+. .|.+++.++..
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a-------------~~~~~~~~~~~ll~-~gad~~~~d~~   69 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHA-------------AENGHKEVVKLLIS-KGADVNAKDSD   69 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHH-------------HHcCCHHHHHHHHh-cccchhhhccC
Confidence            4679999999999999999998 899999999999999999             67899999999998 68899999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCCh
Q psy17862        132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS  211 (265)
Q Consensus       132 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~  211 (265)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhhCCCCCCc
Q psy17862        212 RDVLMILLSHPNVDPH  227 (265)
Q Consensus       212 ~~~~~~L~~~~~~~~~  227 (265)
                       +++++|+++ |++++
T Consensus       150 -~iv~~Ll~~-GA~ie  163 (169)
T 4gpm_A          150 -EVVKLLEKQ-GGWLE  163 (169)
T ss_dssp             -HHHHHHHTC------
T ss_pred             -HHHHHHHHC-CCCcC
Confidence             799999988 78764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-35  Score=231.39  Aligned_cols=182  Identities=20%  Similarity=0.299  Sum_probs=145.6

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCC--Ccccc-CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcC-C
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDS--TLVDA-VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD-S  122 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~--~~~~~-~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~  122 (265)
                      .+..+.||||+|+..|+.+++++|++. +  .+++. .+..|.||||+|             +..|+.+++++|+..+ +
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~~~~Ll~~g~~   97 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIA-------------CSVGNLEVVKSLYDRPLK   97 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSCCHHHHH-------------HHHCCHHHHHHHHSSSSC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCCCHHHHH-------------HHcCCHHHHHHHHhCCCC
Confidence            445566777777777777777777776 4  44444 666777777777             6688888888888842 2


Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCcH
Q psy17862        123 TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTNGGLTP  201 (265)
Q Consensus       123 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tp  201 (265)
                      .+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|++.| ++++.+|..|+||
T Consensus        98 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~  177 (228)
T 2dzn_A           98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP  177 (228)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH
T ss_pred             cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH
Confidence            677778888888888888888888888888888888888888888898888888888888888888 8888888888889


Q ss_pred             HHHHHhCCChHHHHHHHh-hCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        202 LHLAASHSHSRDVLMILL-SHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       202 L~~a~~~~~~~~~~~~L~-~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      ||+|+..|+. +++++|+ +. |++++.+|..|.||+++|++.+
T Consensus       178 L~~A~~~~~~-~~v~~Ll~~~-ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          178 LFHALAEGHG-DAAVLLVEKY-GAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHH-CCCSCCBCTTSCBGGGGCSSTT
T ss_pred             HHHHHHcCCH-HHHHHHHHhc-CCCCCccCCCCCcHHHHHHHHH
Confidence            9888888887 6777777 54 8888888888889988886653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=231.73  Aligned_cols=206  Identities=24%  Similarity=0.271  Sum_probs=182.1

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc---------------------CchHHHHHH
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK---------------------NKRKILEAA  106 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~---------------------~~~~l~~a~  106 (265)
                      ++.+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..++                     ...+++.|+
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence            45567788888888888888888877 67788888888888888887654                     246888889


Q ss_pred             hhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC-HHHHHHHH
Q psy17862        107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN-TECVIVLL  185 (265)
Q Consensus       107 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~v~~Ll  185 (265)
                      ..++.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+. .+++++|+
T Consensus        85 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           85 RQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             HcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            9999999999998 578888999999999999999999999999999999999999999999999996665 89999999


Q ss_pred             hcCCCccccCC-CCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        186 NYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       186 ~~g~~~~~~~~-~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      +.|++++..+. .|.||||+|+..|+. +++++|+++ |++++..|..|.||+++|++.|+.+.++.|++...
T Consensus       164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          164 TFNVSVNLGDKYHKNTALHWAVLAGNT-TVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHHTCH-HHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             hcCCCcchhhccCCCcHHHHHHHcCCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            99999999887 899999999999998 788888887 89999999999999999999999998888887654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.5e-36  Score=239.47  Aligned_cols=197  Identities=25%  Similarity=0.264  Sum_probs=177.5

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCC---CccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDS---TLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL  124 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~---~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  124 (265)
                      +..+.||||+|+..|+.+++++|+....   .+++..|..|.||||+|             +..|+.+++++|+. .|.+
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~   70 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA-------------VITNQPEIAEALLG-AGCD   70 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH-------------HHTTCHHHHHCCCS-CCCC
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCC
Confidence            4567899999999999999999998743   36899999999999999             67899999999998 5888


Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCC-C
Q psy17862        125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGAD------TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN-G  197 (265)
Q Consensus       125 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~  197 (265)
                      ++..+..|.||||+|+..|+.+++++|++.+++      ++..+..|.||||+|+..++.+++++|+++|++++.++. .
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  150 (236)
T 1ikn_D           71 PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN  150 (236)
T ss_dssp             SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            999999999999999999999999999999875      466788899999999999999999999999999999997 9


Q ss_pred             CCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhhcc
Q psy17862        198 GLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNL  260 (265)
Q Consensus       198 g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  260 (265)
                      |.||||+|+..|+. +++++|+++ |++++.+|..|.|||++|+..|+.+.++.|++.-.+..
T Consensus       151 g~tpL~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          151 GRTALHLAVDLQNP-DLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CCCHHHHHHHTTCH-HHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CCCHHHHHHHcCCH-HHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            99999999999998 789999987 89999999999999999999999999999988866544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-36  Score=251.16  Aligned_cols=207  Identities=22%  Similarity=0.270  Sum_probs=186.4

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhc-------cCCCccccCCCCCCcHHHHHHHcCc--------------------CchH
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLD-------HDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRK  101 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~-------~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~  101 (265)
                      ..+.||||+|+..|+.+++++|+.       ..|++++..|..|.||||+|+..++                    ...+
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            468899999999999998888873       4489999999999999999998765                    3479


Q ss_pred             HHHHHhhCCHHHHHHHHhcCC--CCcccCCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCC--------CCCCCChH
Q psy17862        102 ILEAAEHNDSKTLEALLDLDS--TLVDAVDKDGYSPLHRACYNG---HANIVELLIQWGADTQK--------TTIDGWTP  168 (265)
Q Consensus       102 l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~g~t~  168 (265)
                      ++.|+..|+.+++++|+....  .+++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence            999999999999999998532  678888999999999999998   89999999999999886        56789999


Q ss_pred             HHHHHhcCCHHHHHHHHhcC-CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCch
Q psy17862        169 LHSACKWNNTECVIVLLNYG-VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHY  247 (265)
Q Consensus       169 l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~  247 (265)
                      ||+|+..++.+++++|++.+ ++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.|||++|+..|+.+
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~-~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI-EVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH-HHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999886 99999999999999999999998 788999997 8999999999999999999999888


Q ss_pred             hhhhcchhhh
Q psy17862        248 GLFETIEPCF  257 (265)
Q Consensus       248 ~~~~ll~~~~  257 (265)
                      ++..|++...
T Consensus       361 iv~~Ll~~~a  370 (373)
T 2fo1_E          361 IVDIFDRCRP  370 (373)
T ss_dssp             HHHHHHTTC-
T ss_pred             HHHHHHhcCc
Confidence            8888887654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-35  Score=241.13  Aligned_cols=226  Identities=24%  Similarity=0.298  Sum_probs=166.1

Q ss_pred             CCcchhhhHHHHHHHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCcccc
Q psy17862          1 MSDDEDSNELTEKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDA   80 (265)
Q Consensus         1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~   80 (265)
                      |++..-.+...+.+..+..........           .........+..+.++|+.|+..|+.++|++|++. |.+++.
T Consensus         1 ~~~~~a~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~   68 (299)
T 1s70_B            1 MKMADAKQKRNEQLKRWIGSETDLEPP-----------VVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINY   68 (299)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTTSSCCS-----------CCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTC
T ss_pred             CchhHHHHHHHHHHHHHHccccccccc-----------cccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcc
Confidence            555555555555555555544332210           01112223334567999999999999999999998 889999


Q ss_pred             CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy17862         81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK  160 (265)
Q Consensus        81 ~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  160 (265)
                      .|..|.||||+|             +..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        69 ~~~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  134 (299)
T 1s70_B           69 ANVDGLTALHQA-------------CIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA  134 (299)
T ss_dssp             BCTTCCBHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCHHHHH-------------HHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            999999999999             55777888888887 4677777777788888888888888888888888777665


Q ss_pred             CCC------------------------------------------------------------CCChHHHHHHhcCCHHH
Q psy17862        161 TTI------------------------------------------------------------DGWTPLHSACKWNNTEC  180 (265)
Q Consensus       161 ~~~------------------------------------------------------------~g~t~l~~a~~~~~~~~  180 (265)
                      .+.                                                            .|.||||+|+..++.++
T Consensus       135 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  214 (299)
T 1s70_B          135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV  214 (299)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence            543                                                            46677778888888888


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       181 v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +++|++.|++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+... ...+..++++
T Consensus       215 v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~-~~~l~~l~~~  286 (299)
T 1s70_B          215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKE-EACRILVEN-LCDMEAVNKVGQTAFDVADEDI-LGYLEELQKK  286 (299)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCTTTSCCSGG-GHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHhcCCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence            8888888888888888888888888888877 677777776 7888888888888888886543 5555555543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-35  Score=250.90  Aligned_cols=202  Identities=29%  Similarity=0.447  Sum_probs=164.5

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhh
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEH  108 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~  108 (265)
                      ..+.+||++|+..|+.+++++|+.. +.+++..+..|.||||+|+..++                    ...+++.|+..
T Consensus       177 ~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  255 (437)
T 1n11_A          177 KNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE  255 (437)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC
Confidence            3566778888888888888888777 66677777778888888876643                    34688888888


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q psy17862        109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG  188 (265)
Q Consensus       109 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g  188 (265)
                      |+.+++++|+. .+.+.+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.+++.+++++|+++|
T Consensus       256 g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  334 (437)
T 1n11_A          256 GHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  334 (437)
T ss_dssp             TCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             CCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC
Confidence            88888888887 46777788888888888888888888888888888888888888899999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        189 VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       189 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ++++.++..|+||||+|+..|+. +++++|+++ |++++.+|.+|.||+++|++.|+. .+.++|+.
T Consensus       335 ad~n~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~-ga~~~~~~~~g~t~l~~A~~~g~~-~~~~~l~~  398 (437)
T 1n11_A          335 ADVNAKTKLGYSPLHQAAQQGHT-DIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYI-SVTDVLKV  398 (437)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHCChH-HHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCcH-HHHHHHHh
Confidence            99888888899999999988887 788888887 888888888999999999888854 44444443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6e-35  Score=242.68  Aligned_cols=221  Identities=27%  Similarity=0.354  Sum_probs=138.4

Q ss_pred             HHHHHHHHhhcCceeeeeeecccCcccccccC-CCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHH
Q psy17862         13 KMQQLQESIRDGSFNIGQVSAWDDDVVGIEDS-RNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHR   91 (265)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~   91 (265)
                      .-..|..|++.|+.......     +.....+ ...+..+.||||+|+..|+.++|++|++. |++++..|..|.||||+
T Consensus        24 ~~~~L~~A~~~g~~~~v~~l-----l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMAL-----LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHH-----CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             cchhHHHHHHcCCHHHHHHH-----HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHH
Confidence            44778999999987432221     1122222 22344578999999999999999999998 89999999999999999


Q ss_pred             HHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------
Q psy17862         92 ACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT---------  162 (265)
Q Consensus        92 A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---------  162 (265)
                      |+.             .|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+         
T Consensus        98 A~~-------------~g~~~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           98 ACS-------------YGHYEVTELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             HHH-------------TTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHH-------------CCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            954             555555555555 345555555555556666655555555555555555544322         


Q ss_pred             ---------------------------------------------CCCChHHHHHHhc---CCHHHHHHHHhcCCCcccc
Q psy17862        163 ---------------------------------------------IDGWTPLHSACKW---NNTECVIVLLNYGVDVNAQ  194 (265)
Q Consensus       163 ---------------------------------------------~~g~t~l~~a~~~---~~~~~v~~Ll~~g~~~~~~  194 (265)
                                                                   ..|.||||+|+..   +..+++++|++.|++++.+
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence                                                         2344555555555   3355555555555555555


Q ss_pred             CCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        195 TNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       195 ~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +..|.||||+|+..|+. +++++|+++ |++++.+|..|.||||+|+..|+.+.++.|++.
T Consensus       244 ~~~g~t~L~~A~~~g~~-~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHN-DVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             CTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            55555555555555555 455555554 555555555555555555555555555555544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-35  Score=250.56  Aligned_cols=206  Identities=27%  Similarity=0.330  Sum_probs=189.1

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHH
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAA  106 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~  106 (265)
                      .+..+.+||++|+..|+.+++++|++. +.+++..+..|.||||+|+..++                    ...+++.|+
T Consensus       142 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  220 (437)
T 1n11_A          142 MTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA  220 (437)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            345677899999999999999999988 88899999999999999988754                    247899999


Q ss_pred             hhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy17862        107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN  186 (265)
Q Consensus       107 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~  186 (265)
                      ..++.+++++|+. .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++
T Consensus       221 ~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          221 KQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999998 577888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       187 ~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      +|++++.++..|+||||+|+..|+. +++++|+++ |++++.+|..|.||||+|+..|+.+.++.|++.-
T Consensus       300 ~g~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          300 HGVMVDATTRMGYTPLHVASHYGNI-KLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             HTCCTTCCCSSCCCHHHHHHHSSCS-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCccCCCCCCCCCCHHHHHHHcCcH-HHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence            9999999999999999999999998 788999988 8999999999999999999999999999888764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.9e-36  Score=237.50  Aligned_cols=193  Identities=23%  Similarity=0.280  Sum_probs=152.5

Q ss_pred             CCCCcccHHHHHhcC-------------ChHHHHHhhccCCCccc-cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHH
Q psy17862         48 QDKNKRNILEAAEHN-------------DSKTLEALLDHDSTLVD-AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT  113 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g-------------~~~~v~~ll~~~~~~~~-~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~  113 (265)
                      +..+.||||+|+..|             +.+++++|+.. +.+++ ..|..|.||||+|             +..|+.++
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A-------------~~~g~~~~   72 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLA-------------ARYSRSDA   72 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHH-------------HHTTCHHH
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHH-------------HHcCCHHH
Confidence            356789999999987             89999999998 66664 4589999999999             67899999


Q ss_pred             HHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCcc
Q psy17862        114 LEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVN  192 (265)
Q Consensus       114 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~  192 (265)
                      +++|++ .|.+++..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.|++++
T Consensus        73 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (253)
T 1yyh_A           73 AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN  151 (253)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT
T ss_pred             HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC
Confidence            999999 588899999999999999999999999999999987 899999999999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        193 AQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       193 ~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      .++..|.||||+|+..|+. +++++|++. |++++.+|..|.||||+|+..|+.+.++.|++...
T Consensus       152 ~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          152 AVDDLGKSALHWAAAVNNV-DAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  214 (253)
T ss_dssp             CBCTTSCBHHHHHHHHTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CcCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999999998 788999887 89999999999999999999999999998888743

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-35  Score=237.91  Aligned_cols=183  Identities=26%  Similarity=0.279  Sum_probs=154.2

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCC----
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDS----  122 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----  122 (265)
                      .+..+.||||+|+..|+.++|++|++. |++++..|..|.||||+|             +..++.+++++|+..+.    
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A-------------~~~~~~~~v~~Ll~~~~~~~~  106 (282)
T 1oy3_D           41 QNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLA-------------CRVRAHTCACVLLQPRPSHPR  106 (282)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHH-------------TTTTCHHHHHHHSSSCCSSCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-------------HHcCCcchhHhhhccCCCCch
Confidence            345678999999999999999999998 899999999999999999             66788999999987432    


Q ss_pred             ------------------------------------------CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy17862        123 ------------------------------------------TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK  160 (265)
Q Consensus       123 ------------------------------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  160 (265)
                                                                ..++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  186 (282)
T 1oy3_D          107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK  186 (282)
T ss_dssp             CC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             hhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence                                                      23567788999999999999999999999999999999


Q ss_pred             CCCC-CChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHH
Q psy17862        161 TTID-GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREI  239 (265)
Q Consensus       161 ~~~~-g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~  239 (265)
                      .+.. |.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++
T Consensus       187 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP-ILARLLRAH-GAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH-HHHHHHHHT-TCCCCCCC---------
T ss_pred             CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc-HHHHHHHHc-CCCcCcCCCcccccccc
Confidence            8854 99999999999999999999999999999999999999999999997 799999998 99999999999999999


Q ss_pred             HhhcCC
Q psy17862        240 ATRSGI  245 (265)
Q Consensus       240 a~~~~~  245 (265)
                      |.....
T Consensus       265 a~~~~~  270 (282)
T 1oy3_D          265 SGSDSD  270 (282)
T ss_dssp             ------
T ss_pred             cCCccc
Confidence            987753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=6.3e-36  Score=238.69  Aligned_cols=191  Identities=20%  Similarity=0.181  Sum_probs=169.0

Q ss_pred             CcccHHHHHhcCChHHH----HHhhccCCCcccc----CCCCCCcHHHHHHHcCcCchHHHHHHhh---CCHHHHHHHHh
Q psy17862         51 NKRNILEAAEHNDSKTL----EALLDHDSTLVDA----VDKDGYSPLHRACYNDKNKRKILEAAEH---NDSKTLEALLD  119 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v----~~ll~~~~~~~~~----~d~~g~tpl~~A~~~~~~~~~l~~a~~~---~~~~~~~~ll~  119 (265)
                      +.|+||.|+..|+.+.|    ++|+.. +.+++.    .|..|.||||+|             +..   |+.+++++|++
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A-------------~~~~~~g~~~~v~~Ll~   67 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKA-------------VLNLQDGVNACIMPLLQ   67 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHH-------------HHTCBTTBCTTHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHH-------------HHccccchHHHHHHHHh
Confidence            57899999999999855    555556 889998    899999999999             556   88999999998


Q ss_pred             cCCCCcc-----------cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------CChHHHHHHhc
Q psy17862        120 LDSTLVD-----------AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID-------------GWTPLHSACKW  175 (265)
Q Consensus       120 ~~~~~~~-----------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------g~t~l~~a~~~  175 (265)
                      . +...+           ..+..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..
T Consensus        68 ~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  146 (256)
T 2etb_A           68 I-DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT  146 (256)
T ss_dssp             H-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred             c-CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence            4 43333           23467999999999999999999999999999998876             99999999999


Q ss_pred             CCHHHHHHHHh---cCCCccccCCCCCcHHHHHHh--CCChHH-------HHHHHhhCCCCCC-------cccCCCCccH
Q psy17862        176 NNTECVIVLLN---YGVDVNAQTNGGLTPLHLAAS--HSHSRD-------VLMILLSHPNVDP-------HILSTSNESA  236 (265)
Q Consensus       176 ~~~~~v~~Ll~---~g~~~~~~~~~g~tpL~~a~~--~~~~~~-------~~~~L~~~~~~~~-------~~~~~~g~t~  236 (265)
                      ++.+++++|++   .|++++.+|..|+||||+|+.  .++. +       ++++|+++ |+++       +.+|..|.||
T Consensus       147 ~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tp  224 (256)
T 2etb_A          147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP-ENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTP  224 (256)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCH
T ss_pred             CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc-hhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCH
Confidence            99999999999   999999999999999999998  6665 4       88999887 8898       8999999999


Q ss_pred             HHHHhhcCCchhhhhcchhhhh
Q psy17862        237 REIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       237 l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      ||+|+..|+.+.++.||+....
T Consensus       225 L~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          225 LKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhCCCC
Confidence            9999999999999999987544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-34  Score=227.50  Aligned_cols=191  Identities=24%  Similarity=0.251  Sum_probs=174.1

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcC-CCCccc-C
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLD-STLVDA-V  128 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~-~  128 (265)
                      +.||||+|+..|+.++|++|++.++...+..|..|.||||+|             +..|+.+++++|+..+ ..+++. .
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~~~~~~~~~~~~   68 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-------------VSFQAHEITSFLLSKMENVNLDDYP   68 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHHTCTTCCGGGCC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH-------------HHcCCHHHHHHHHhccccccccccC
Confidence            578999999999999999999995555666899999999999             6789999999999953 145555 7


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWG--ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      +..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            889999999999999999999999998  889999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        207 SHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       207 ~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ..|+. +++++|++...++++.+|..|.||||+|+..|+.+.++.|+++
T Consensus       149 ~~~~~-~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  196 (228)
T 2dzn_A          149 SVGSL-KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK  196 (228)
T ss_dssp             HTTCH-HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCH-HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99998 7899999884499999999999999999999999999999833

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-34  Score=231.41  Aligned_cols=203  Identities=23%  Similarity=0.314  Sum_probs=187.0

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccC-CCCCCcHHHHHHHcCc--------------------CchHHHHHHhh
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAV-DKDGYSPLHRACYNDK--------------------NKRKILEAAEH  108 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~  108 (265)
                      .+.++|+.|+..|+.++|++|++. +.+++.. +..|.||||+|+..++                    ...+++.|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            356899999999999999999998 7888887 7889999999998764                    34799999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCChHHHHHHhcCCH
Q psy17862        109 NDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT----------TIDGWTPLHSACKWNNT  178 (265)
Q Consensus       109 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~  178 (265)
                      |+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..++.
T Consensus        83 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T 1wdy_A           83 GSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHH-TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHH-cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence            99999999999 57888999999999999999999999999999999999877          77899999999999999


Q ss_pred             HHHHHHHhc-CCCccccCCCCCcHHHHHHhCCCh---HHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        179 ECVIVLLNY-GVDVNAQTNGGLTPLHLAASHSHS---RDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       179 ~~v~~Ll~~-g~~~~~~~~~g~tpL~~a~~~~~~---~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      +++++|++. |++++.++..|.||||+|+..++.   ..++++|++. |++++.++..|.||||+|+..|+.+.++.|++
T Consensus       162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            999999988 999999999999999999999882   3788999987 89999999999999999999999999999988


Q ss_pred             h
Q psy17862        255 P  255 (265)
Q Consensus       255 ~  255 (265)
                      .
T Consensus       241 ~  241 (285)
T 1wdy_A          241 Q  241 (285)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.9e-34  Score=235.69  Aligned_cols=236  Identities=21%  Similarity=0.240  Sum_probs=141.6

Q ss_pred             HHHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHH
Q psy17862         13 KMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRA   92 (265)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A   92 (265)
                      --..|..|+++|++++.....  +  .+.+.+......+.||||+|+..|+.++|++|++. |++++..+..+.+|++.+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL--~--~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLL--E--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH--H--HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHH--H--CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccCCCchhHHH
Confidence            345688999999975543321  1  12222222333478999999999999999999987 777776666666666665


Q ss_pred             HHcCc--------------------CchHHHHHHhhCCHHHHHHHHhcCCCCccc----------CCCCCChHHHHHHHc
Q psy17862         93 CYNDK--------------------NKRKILEAAEHNDSKTLEALLDLDSTLVDA----------VDKDGYSPLHRACYN  142 (265)
Q Consensus        93 ~~~~~--------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~g~t~l~~a~~~  142 (265)
                      +..+.                    ...+++.|+..|+.++++.|+.. |.+++.          .+..|.||||+|+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            54321                    23456666666666666666652 333322          223455666666666


Q ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHH
Q psy17862        143 GHANIVELLIQ-WGADTQKTTIDGWTPLHSACKWNN----TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMI  217 (265)
Q Consensus       143 ~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~  217 (265)
                      |+.+++++|++ .|++++..+..|.|+++.++..+.    ..++++|+++|++++.++..|+||||+|+..|+. +++++
T Consensus       179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~-~~v~~  257 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL-GLVQR  257 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH-HHHHH
T ss_pred             CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhh-HHHHH
Confidence            66666666664 356666666666666655544332    3355666666666666666666666666666655 44444


Q ss_pred             HhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        218 LLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       218 L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      |+...+++++.+|..|+||||+|++.|+.+.|+.||+.
T Consensus       258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            44444566666666666666666666655555555543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=234.98  Aligned_cols=191  Identities=25%  Similarity=0.345  Sum_probs=151.0

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCC-------ccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHH-HHHHHHhcC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDST-------LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK-TLEALLDLD  121 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~-------~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~-~~~~ll~~~  121 (265)
                      .+.++|+.|+..|+.++|++||+....       .++..+..|.|||++|             +..++.+ +++.|+. .
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a-------------~~~~~~~~~v~~Ll~-~   75 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQC-------------PKCAPAQKRLAKVPA-S   75 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------------C
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHH-------------HHhCCHHHHHHHHHH-C
Confidence            456899999999999999999987432       2456778899999999             4445544 5666776 6


Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcH
Q psy17862        122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP  201 (265)
Q Consensus       122 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp  201 (265)
                      |++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+++++|++.|++++.+|..|+||
T Consensus        76 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~Tp  155 (269)
T 4b93_B           76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTP  155 (269)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        202 LHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       202 L~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      ||+|+..|+. +++++|++. |++++..+..|.||||+|+..|+.+.++.||+.-
T Consensus       156 L~~A~~~g~~-~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G  208 (269)
T 4b93_B          156 LIYACSGGHH-ELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLHG  208 (269)
T ss_dssp             HHHHHHTTCG-GGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHCCCH-HHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999998 788888887 8999999999999999999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=229.54  Aligned_cols=206  Identities=22%  Similarity=0.287  Sum_probs=159.2

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccC----------CCccccCCCCCCcHHHHHHHcCc------------------
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHD----------STLVDAVDKDGYSPLHRACYNDK------------------   97 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~----------~~~~~~~d~~g~tpl~~A~~~~~------------------   97 (265)
                      ..+..+.+++|+|+..|+.+.+..++...          ...++..|..|+||||+|+..|+                  
T Consensus        10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~   89 (285)
T 3d9h_A           10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT   89 (285)
T ss_dssp             --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred             ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            34556789999999999988887765432          22356788999999999998765                  


Q ss_pred             --CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhc
Q psy17862         98 --NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW  175 (265)
Q Consensus        98 --~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  175 (265)
                        ...+++.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~  167 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR  167 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc
Confidence              3579999999999999999998 578899999999999999999999999999999999988644 599999999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        176 NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       176 ~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ++.+++++|++.|++++.++..|.||||+|+..|+. +++++|++. |++++. +..|.||||+|+..|+.+.++.|++.
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR-ACVKKLLES-GADVNQ-GKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH-HHHHHHHHT-TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH-HHHHHHHHC-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999999999999999999999999998 788888887 888885 88999999999999999988888876


Q ss_pred             h
Q psy17862        256 C  256 (265)
Q Consensus       256 ~  256 (265)
                      -
T Consensus       245 g  245 (285)
T 3d9h_A          245 G  245 (285)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=9.1e-34  Score=211.87  Aligned_cols=152  Identities=35%  Similarity=0.545  Sum_probs=143.5

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy17862        101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC  180 (265)
Q Consensus       101 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  180 (265)
                      +|+.|++.|+.++++.|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            4555688999999999999 589999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       181 v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +++|+++|++++.+|..|+||||+|+..|+. +++++|++. |++++.+|..|+|||++|++.|+.++++.|++.
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHK-EVVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999998 788999987 899999999999999999999988888877764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.6e-35  Score=235.77  Aligned_cols=190  Identities=18%  Similarity=0.135  Sum_probs=172.6

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      .+..+.||||+|+..|+.++|++|++. |++++..+  |.||||+|             +..|+.+++++|++ .|.+++
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~--g~t~L~~A-------------~~~g~~~~v~~Ll~-~ga~~~   89 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQA-------------ATLEDTKIVKILLF-SGLDDS   89 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCCT--TCCHHHHH-------------TTSSSCHHHHHHHH-TTCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCC--CCCHHHHH-------------HHcCCHHHHHHHHH-CCCCCC
Confidence            345678999999999999999999998 88888874  89999999             67899999999999 588899


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG-WTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g-~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a  205 (265)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..++.+++++|+++|++.... ..|.||||+|
T Consensus        90 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A  168 (285)
T 3kea_A           90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHIT  168 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHH
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHH
Confidence            999999999999999999999999999999999999999 79999999999999999999999877332 2789999999


Q ss_pred             HhCCChHHHHHHHhhCCCCCCcccCCCCccH-HHHHhhcCCchhhhhcchhh
Q psy17862        206 ASHSHSRDVLMILLSHPNVDPHILSTSNESA-REIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       206 ~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~ll~~~  256 (265)
                      +..|+. +++++|+++ |++++.++..|.|| ||+|+..|+.+.+..|++.-
T Consensus       169 ~~~g~~-~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          169 IKNGHV-DMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             HHTTCH-HHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred             HHcChH-HHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence            999998 788888887 89999999999998 99999999999888888763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=9.9e-35  Score=233.92  Aligned_cols=201  Identities=24%  Similarity=0.253  Sum_probs=170.0

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhcc---CCCccc----cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHH
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDH---DSTLVD----AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALL  118 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~----~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll  118 (265)
                      ..+..+.++||+|+..|+.++|+.|++.   .+.+++    ..|..|.||||+|+.+.          ..|+.+++++|+
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~----------~~g~~~~v~~Ll   77 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL----------HNGQNDTIALLL   77 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSC----------BTTBCHHHHHHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHH----------hcCChHHHHHHH
Confidence            3455678999999999999999999873   355555    45789999999995421          248899999999


Q ss_pred             hcCC----------CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------CCChHHHHHHh
Q psy17862        119 DLDS----------TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI--------------DGWTPLHSACK  174 (265)
Q Consensus       119 ~~~~----------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~g~t~l~~a~~  174 (265)
                      +.+.          ......+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+.
T Consensus        78 ~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  157 (273)
T 2pnn_A           78 DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC  157 (273)
T ss_dssp             HHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH
T ss_pred             HhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHH
Confidence            8531          11222567899999999999999999999999999999886              79999999999


Q ss_pred             cCCHHHHHHHHh---cCCCccccCCCCCcHHHHHHhCCCh--------HHHHHHHhhCCCCCCc-------ccCCCCccH
Q psy17862        175 WNNTECVIVLLN---YGVDVNAQTNGGLTPLHLAASHSHS--------RDVLMILLSHPNVDPH-------ILSTSNESA  236 (265)
Q Consensus       175 ~~~~~~v~~Ll~---~g~~~~~~~~~g~tpL~~a~~~~~~--------~~~~~~L~~~~~~~~~-------~~~~~g~t~  236 (265)
                      .++.+++++|++   .|++++.+|..|+||||+|+..|+.        .+++++|++. |++++       .+|..|.||
T Consensus       158 ~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~Tp  236 (273)
T 2pnn_A          158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTP  236 (273)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCH
T ss_pred             cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCH
Confidence            999999999999   9999999999999999999998871        3788888887 78876       589999999


Q ss_pred             HHHHhhcCCchhhhhcchhhh
Q psy17862        237 REIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       237 l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      ||+|+..|+.+.++.||+.-.
T Consensus       237 L~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          237 LALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhChHHHHHHHHHCCC
Confidence            999999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=8.5e-35  Score=232.57  Aligned_cols=199  Identities=23%  Similarity=0.236  Sum_probs=170.3

Q ss_pred             CCcccHHHHHhcCChHHHHHhhc---cCCCccccCC----CCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLD---HDSTLVDAVD----KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDS  122 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~---~~~~~~~~~d----~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  122 (265)
                      .+.++||.|+..|+.+.|+.|++   ..+.+++..+    ..|.||||+|+..          +..|+.+++++|+..+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~----------~~~g~~~~v~~Ll~~g~   73 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN----------LSAGRNDTIPILLDIAE   73 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTS----------CBTTBCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHH----------hhcCCHHHHHHHHHhcc
Confidence            46789999999999997766666   2377787665    7799999999421          15788999999998521


Q ss_pred             ----------CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCChHHHHHHhcCCH
Q psy17862        123 ----------TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT--------------IDGWTPLHSACKWNNT  178 (265)
Q Consensus       123 ----------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~  178 (265)
                                ...+..+..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..++.
T Consensus        74 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  153 (260)
T 3jxi_A           74 KTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP  153 (260)
T ss_dssp             HTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred             cccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence                      2344456689999999999999999999999999999988              5899999999999999


Q ss_pred             HHHHHHHh---cCCCccccCCCCCcHHHHHHhCCCh--------HHHHHHHhhCCCCCC-------cccCCCCccHHHHH
Q psy17862        179 ECVIVLLN---YGVDVNAQTNGGLTPLHLAASHSHS--------RDVLMILLSHPNVDP-------HILSTSNESAREIA  240 (265)
Q Consensus       179 ~~v~~Ll~---~g~~~~~~~~~g~tpL~~a~~~~~~--------~~~~~~L~~~~~~~~-------~~~~~~g~t~l~~a  240 (265)
                      +++++|++   .|++++.+|..|+||||+|+..++.        .+++++|++. |+++       +..|..|.||||+|
T Consensus       154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A  232 (260)
T 3jxi_A          154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMA  232 (260)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHH
Confidence            99999999   9999999999999999999987761        2688888887 7887       78999999999999


Q ss_pred             hhcCCchhhhhcchhhhhc
Q psy17862        241 TRSGIHYGLFETIEPCFNN  259 (265)
Q Consensus       241 ~~~~~~~~~~~ll~~~~~~  259 (265)
                      ++.|+.+.++.||++....
T Consensus       233 ~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          233 AKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhCCCc
Confidence            9999999999999885543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=230.06  Aligned_cols=190  Identities=24%  Similarity=0.286  Sum_probs=174.4

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCc--cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTL--VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..++++.|+..|+.+.++.++.. +.+  +|..|..|+||||+|             +..|+.+++++|++.+..+++..
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A-------------~~~g~~~~v~~Ll~~g~~~~~~~  141 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYS-------------VSHANFPVVQQLLDSGVCKVDKQ  141 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHHTSCCCTTCC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHH-------------HHCCCHHHHHHHHHCCCCcCCCC
Confidence            35678899999999999999876 444  889999999999999             77899999999999655589999


Q ss_pred             CCCCChHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHH
Q psy17862        129 DKDGYSPLHRAC-----YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH  203 (265)
Q Consensus       129 ~~~g~t~l~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~  203 (265)
                      +..|.||||+|+     ..++.+++++|++.|...+..+..|.||||+|+..++.+++++|++.|++++.+|..|+||||
T Consensus       142 ~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh  221 (276)
T 4hbd_A          142 NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM  221 (276)
T ss_dssp             CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            999999999999     568899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        204 LAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       204 ~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +|+..|+. +++++|++..|++++.+|..|.||||+|+..|+.+.++.|+++
T Consensus       222 ~A~~~g~~-~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          222 CACEHGHK-EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHTCH-HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHCCCH-HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999998 7889998855999999999999999999999988888888765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7e-33  Score=230.18  Aligned_cols=193  Identities=29%  Similarity=0.352  Sum_probs=177.1

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      +.+.++|+.|+..|+.+.|++++...+.+++..|..|.||||+|             +..|+.+++++|++ .|.+++..
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~   87 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA-------------AGYNRVRIVQLLLQ-HGADVHAK   87 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCcc
Confidence            34678999999999999999999988999999999999999999             67899999999999 58899999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC-------------
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-------------  195 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-------------  195 (265)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+             
T Consensus        88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~  167 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP  167 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999987654             


Q ss_pred             -----------------------------------------CCCCcHHHHHHhCCC--hHHHHHHHhhCCCCCCcccCCC
Q psy17862        196 -----------------------------------------NGGLTPLHLAASHSH--SRDVLMILLSHPNVDPHILSTS  232 (265)
Q Consensus       196 -----------------------------------------~~g~tpL~~a~~~~~--~~~~~~~L~~~~~~~~~~~~~~  232 (265)
                                                               ..|.||||+|+..++  ..+++++|++. |++++.++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~  246 (351)
T 3utm_A          168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKD  246 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTT
T ss_pred             hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCC
Confidence                                                     456789999998854  24789999987 8999999999


Q ss_pred             CccHHHHHhhcCCchhhhhcchhh
Q psy17862        233 NESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       233 g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      |.||||+|++.|+.+.++.|++.-
T Consensus       247 g~t~L~~A~~~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          247 FMTPLHVAAERAHNDVMEVLHKHG  270 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999999888764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.7e-33  Score=210.25  Aligned_cols=170  Identities=25%  Similarity=0.352  Sum_probs=149.3

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      +.+||+.|+..|+.+.+++|+...+..++..|..|.||||+|             +..|+.+++++|++ .+.+++..+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~~~   67 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-------------SAFGEIETVRFLLE-WGADPHILAK   67 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-HTCCTTCCCT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCchhhcc
Confidence            468999999999999999999996666899999999999999             66899999999998 4788889999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH  210 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~  210 (265)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             cCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHhhCCCCCCcccCCCCccH
Q psy17862        211 SRDVLMILLSHPNVDPHILSTSNESA  236 (265)
Q Consensus       211 ~~~~~~~L~~~~~~~~~~~~~~g~t~  236 (265)
                      . +++++|+++ +.++...+..|.||
T Consensus       148 ~-~~~~~L~~~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A          148 R-KVQQVIENH-ILKLFQSNLVPADP  171 (172)
T ss_dssp             H-HHHHHHHHH-HHHHSCC-------
T ss_pred             H-HHHHHHHHH-HHHHhcccCCCCCC
Confidence            7 788888887 78888888888877

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2e-33  Score=235.31  Aligned_cols=237  Identities=16%  Similarity=0.117  Sum_probs=199.9

Q ss_pred             HHHHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHH
Q psy17862         12 EKMQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHR   91 (265)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~   91 (265)
                      +-...|..|+..|++++.....     ....+....+..+.||||+|+..|+.++|++|++. +.+++.  ..|.||||+
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll-----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~--~~g~t~L~~   90 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLI-----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHSL--WHGQKPIHL   90 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCCC--BTTBCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccc--cCCCCHHHH
Confidence            3456788888888865433322     11222233445678999999999999999999999 554443  579999999


Q ss_pred             HHHcCc-----------------------------------------CchHHHHHHhhC--CHHHHHHHHhcCCCCcccC
Q psy17862         92 ACYNDK-----------------------------------------NKRKILEAAEHN--DSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        92 A~~~~~-----------------------------------------~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~  128 (265)
                      |+..++                                         ...+++.|+..|  +.+++++|++. |.+++..
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~  169 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAK  169 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCccc
Confidence            998654                                         247999999999  99999999995 8899999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHH
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGAD-----TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLH  203 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~  203 (265)
                      +..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  249 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY  249 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            99999999999999999999999999998     9999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHhhCCCCCCc------------ccCCCCccHHHHHhhcCCchhhhhcchhhhhc
Q psy17862        204 LAASHSHSRDVLMILLSHPNVDPH------------ILSTSNESAREIATRSGIHYGLFETIEPCFNN  259 (265)
Q Consensus       204 ~a~~~~~~~~~~~~L~~~~~~~~~------------~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  259 (265)
                      +|+..|+. +++++|+++ +.+++            ..+..+.||++.|+..|+...+..+|......
T Consensus       250 ~A~~~g~~-~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~  315 (364)
T 3ljn_A          250 LSVRAAMV-LLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE  315 (364)
T ss_dssp             HHHHTCCH-HHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhChH-HHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHH
Confidence            99999998 788888876 44432            25678899999999999999999998876544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-33  Score=234.63  Aligned_cols=205  Identities=17%  Similarity=0.206  Sum_probs=179.9

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCC-CCCCcHHHHHHHcCc---------------------------
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVD-KDGYSPLHRACYNDK---------------------------   97 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~tpl~~A~~~~~---------------------------   97 (265)
                      .+...+.|+||.|+..+ .+++++|+.   .+++..| ..|+||||+|+.+++                           
T Consensus        89 ~~~~~g~t~L~~Aa~~~-~~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~  164 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGS-YAITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC  164 (373)
T ss_dssp             -----CCCHHHHHHHSS-SCCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CCCCCCccHHHHHhcCC-chHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence            44566789999999955 477777764   4688888 789999999997654                           


Q ss_pred             -CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCChHHHHHH
Q psy17862         98 -NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG---ADTQKTTIDGWTPLHSAC  173 (265)
Q Consensus        98 -~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~g~t~l~~a~  173 (265)
                       ...+++.|+..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|++.+   ++++..+..|.||||+|+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence             2469999999999999999999 58889999999999999999999999999999988   799999999999999999


Q ss_pred             hcC---CHHHHHHHHhcCCCccc--------cCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhh
Q psy17862        174 KWN---NTECVIVLLNYGVDVNA--------QTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATR  242 (265)
Q Consensus       174 ~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~  242 (265)
                      ..+   +.+++++|++.|++++.        .+..|.||||+|+..|+. +++++|++..+++++.+|..|.||||+|+.
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~  322 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM-PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  322 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH-HHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH-HHHHHHHHhcCCCccCcCCCCCCHHHHHHH
Confidence            998   89999999999999886        577899999999999998 788888877679999999999999999999


Q ss_pred             cCCchhhhhcchhh
Q psy17862        243 SGIHYGLFETIEPC  256 (265)
Q Consensus       243 ~~~~~~~~~ll~~~  256 (265)
                      .|+.+.++.|++.-
T Consensus       323 ~g~~~iv~~Ll~~g  336 (373)
T 2fo1_E          323 EGRIEVVMYLIQQG  336 (373)
T ss_dssp             HTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcC
Confidence            99999999988864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-32  Score=214.20  Aligned_cols=179  Identities=25%  Similarity=0.306  Sum_probs=163.5

Q ss_pred             CChHHHHHhhccCCCccccC-CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHH
Q psy17862         62 NDSKTLEALLDHDSTLVDAV-DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRAC  140 (265)
Q Consensus        62 g~~~~v~~ll~~~~~~~~~~-d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  140 (265)
                      |+.+++++|++. +.+++.. |..|.||||+|             +..|+.+++++|++ .+.+++..+..|.||||+|+
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~   66 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLA-------------ARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAV   66 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHH-------------HHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHH
Confidence            678889999998 6676654 88999999999             77899999999998 57889999999999999999


Q ss_pred             HcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHh
Q psy17862        141 YNGHANIVELLIQWGA-DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL  219 (265)
Q Consensus       141 ~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~  219 (265)
                      ..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+. +++++|+
T Consensus        67 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll  145 (223)
T 2f8y_A           67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV-DAAVVLL  145 (223)
T ss_dssp             HTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCH-HHHHHHH
Confidence            9999999999999987 8899999999999999999999999999999999999999999999999999998 7888898


Q ss_pred             hCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        220 SHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       220 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      ++ |++++..|..|.||||+|+..|+.+.++.|++...
T Consensus       146 ~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  182 (223)
T 2f8y_A          146 KN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  182 (223)
T ss_dssp             HT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             Hc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88 89999999999999999999999999998887643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.9e-32  Score=209.27  Aligned_cols=163  Identities=23%  Similarity=0.238  Sum_probs=153.4

Q ss_pred             ccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q psy17862         77 LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA  156 (265)
Q Consensus        77 ~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  156 (265)
                      .++.+|..|.||||+|             +..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        27 ~~n~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   92 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVA-------------CMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS   92 (192)
T ss_dssp             HHTCCCTTCCCHHHHH-------------HHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHhCcCCCCCCHHHHH-------------HHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence            4678899999999999             678999999999995 67888899999999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccH
Q psy17862        157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA  236 (265)
Q Consensus       157 ~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~  236 (265)
                      +++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+. +++++|+++ |++++.+|..|.||
T Consensus        93 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~  170 (192)
T 2rfm_A           93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS-EIVKKLLEL-GADISARDLTGLTA  170 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH-HHHHHHHHT-TCCTTCBCTTSCBH
T ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCcCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999999998 788899888 89999999999999


Q ss_pred             HHHHhhcCCchhhhhcchh
Q psy17862        237 REIATRSGIHYGLFETIEP  255 (265)
Q Consensus       237 l~~a~~~~~~~~~~~ll~~  255 (265)
                      +++|+..|+.+.+..|++.
T Consensus       171 l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          171 EASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHhc
Confidence            9999999988888887765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.3e-32  Score=223.18  Aligned_cols=202  Identities=23%  Similarity=0.313  Sum_probs=171.5

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCC-CCCcHHHHHHHcCc--------------------CchHHHHHHhhC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDK-DGYSPLHRACYNDK--------------------NKRKILEAAEHN  109 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~tpl~~A~~~~~--------------------~~~~l~~a~~~~  109 (265)
                      +.|+|+.|++.|+.++|++||+. |+++|.++. .|+||||+|+..|+                    ...+++.++..+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            56899999999999999999998 899998875 59999999976544                    123555555566


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCChHHHHHHhcCCHH
Q psy17862        110 DSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT----------TIDGWTPLHSACKWNNTE  179 (265)
Q Consensus       110 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~  179 (265)
                      ....+..++. .+.+++..+..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+
T Consensus       104 ~~~~~~~~~~-~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          104 SVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             CHHHHHHHHT-TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             cchhhHHhhh-ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence            6666665555 45677788899999999999999999999999999887643          446899999999999999


Q ss_pred             HHHHHHh-cCCCccccCCCCCcHHHHHHhCC---ChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        180 CVIVLLN-YGVDVNAQTNGGLTPLHLAASHS---HSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       180 ~v~~Ll~-~g~~~~~~~~~g~tpL~~a~~~~---~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      ++++|+. .|++++.++..|.||+++++..+   ..+.++++|+++ |++++.++..|.||||+|+..|+.+.+..|+..
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            9999995 59999999999999999877643   445788999987 899999999999999999999999999888875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-32  Score=216.67  Aligned_cols=210  Identities=24%  Similarity=0.272  Sum_probs=173.0

Q ss_pred             HHHHHhhcCceeeeeeecccCccccc-ccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHH
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVGI-EDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACY   94 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~   94 (265)
                      .|..|+..|+.+.....  ....... ......+..+.||||+|+..|+.++|++|++. |++++..|..|.||||+|  
T Consensus        11 ~L~~A~~~g~~~~v~~L--l~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A--   85 (236)
T 1ikn_D           11 FLHLAIIHEEKALTMEV--IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLA--   85 (236)
T ss_dssp             TTHHHHHTTCSSSSSCC--CC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHH--
T ss_pred             hhHHHHHcCChhHHHHH--HHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHH--
Confidence            35667777775432222  1111111 11223344578999999999999999999998 899999999999999999  


Q ss_pred             cCcCchHHHHHHhhCCHHHHHHHHhcCC-----CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCChH
Q psy17862         95 NDKNKRKILEAAEHNDSKTLEALLDLDS-----TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI-DGWTP  168 (265)
Q Consensus        95 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~-----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~  168 (265)
                                 +..|+.+++++|+..+.     ...+..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||
T Consensus        86 -----------~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D           86 -----------CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA  154 (236)
T ss_dssp             -----------HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             -----------HHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence                       67899999999998542     22567788999999999999999999999999999999997 99999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCc--ccCCCCccHHHHHhhc
Q psy17862        169 LHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPH--ILSTSNESAREIATRS  243 (265)
Q Consensus       169 l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~--~~~~~g~t~l~~a~~~  243 (265)
                      ||+|+..++.+++++|+++|++++.++..|.|||++|+..|+. +++++|+++ |+++.  ..+..|.||.+.+...
T Consensus       155 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~-~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          155 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-RIQQQLGQL-TLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH-HHHHHHHTT-SCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch-HHHHHHHHc-chhhhhcCCccchHHHHhhhccc
Confidence            9999999999999999999999999999999999999999998 789999987 78766  7889999998776544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=229.02  Aligned_cols=198  Identities=17%  Similarity=0.154  Sum_probs=174.6

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      ....+.++|++|+..|+.++|++|++. |.+++..|..|.||||+|             +..|+.+++++|++ .|.+++
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A-------------~~~g~~~~v~~Ll~-~ga~~n   81 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNA-------------ICGANYSIVDFLIT-AGANVN   81 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTT
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-CCCCCC
Confidence            334556889999999999999999998 889999999999999999             67899999999998 588999


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHH--HhcCCHHHHHHHHhcCCCccccCCCCCcHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSA--CKWNNTECVIVLLNYGVDVNAQTNGGLTPLH  203 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~  203 (265)
                      ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..++.+++++|++.|++++.++..|.||++
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            999999999999999999999999999999999986 6999999999  9999999999999999999999999999998


Q ss_pred             HHHhCCChHHHHHHHhhCCCCC--CcccCCCCccHHHHHhhcCCchhhhhcchhhhhccCCCC
Q psy17862        204 LAASHSHSRDVLMILLSHPNVD--PHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMGP  264 (265)
Q Consensus       204 ~a~~~~~~~~~~~~L~~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  264 (265)
                      .++..+.    .++|+.. |.+  ++.+|..|.||||+|++.|+.+.|+..+...++.+..++
T Consensus       162 ~~~~~~~----~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~~~~  219 (229)
T 2vge_A          162 DYSAEFG----DELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR  219 (229)
T ss_dssp             CBCCSST----TBCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC---
T ss_pred             HHhhccc----cccCccc-cccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCCCch
Confidence            6655433    2455555 676  677899999999999999999999998888888776543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.7e-31  Score=199.34  Aligned_cols=162  Identities=27%  Similarity=0.360  Sum_probs=150.8

Q ss_pred             CCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy17862         84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI  163 (265)
Q Consensus        84 ~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  163 (265)
                      .|.||||+|             +..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus         2 ~~~t~L~~A-------------~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   67 (167)
T 3v31_A            2 ANSLSVHQL-------------AAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK   67 (167)
T ss_dssp             TTCCCHHHH-------------HHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCcchHHHH-------------HHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC
Confidence            578999999             778999999999995 678899999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhc
Q psy17862        164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRS  243 (265)
Q Consensus       164 ~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~  243 (265)
                      .|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+. +++++|++. |++++.+|..|.||+++|+..
T Consensus        68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A           68 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV-KCVKMLLES-GADPTIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998 788888887 899999999999999999999


Q ss_pred             CCchhhhhcchhhhhccC
Q psy17862        244 GIHYGLFETIEPCFNNLS  261 (265)
Q Consensus       244 ~~~~~~~~ll~~~~~~~~  261 (265)
                      |+.+.+..|++.....+.
T Consensus       146 ~~~~~~~~L~~~~~~~~~  163 (167)
T 3v31_A          146 GYRSVQQVIESHLLKLLQ  163 (167)
T ss_dssp             TCHHHHHHHHHHHHHHCS
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            998888888887665443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=2.7e-31  Score=204.11  Aligned_cols=187  Identities=20%  Similarity=0.234  Sum_probs=162.8

Q ss_pred             HHHHHHhhcCceeeeeeecccCcccccc-cCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHH
Q psy17862         15 QQLQESIRDGSFNIGQVSAWDDDVVGIE-DSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRAC   93 (265)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~   93 (265)
                      ..|..|+..|+.......     +.... +....+..+.||||+|+..|+.+++++|++. |++++..+..|.||||+| 
T Consensus         7 ~~L~~A~~~g~~~~v~~l-----l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A-   79 (201)
T 3hra_A            7 GALLEAANQRDTKKVKEI-----LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYA-   79 (201)
T ss_dssp             THHHHHHHTTCHHHHHHH-----HTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-
T ss_pred             cHHHHHHHhccHHHHHHH-----HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-
Confidence            456677777765332222     11111 2223345678999999999999999999998 899999999999999999 


Q ss_pred             HcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHH
Q psy17862         94 YNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWG-ADTQKTTIDGWTPLHSA  172 (265)
Q Consensus        94 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a  172 (265)
                                  +..++.+++++|+...+.+++..+..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|
T Consensus        80 ------------~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  147 (201)
T 3hra_A           80 ------------GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA  147 (201)
T ss_dssp             ------------HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHH
T ss_pred             ------------HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHH
Confidence                        67899999999997788899999999999999999999999999999999 99999999999999999


Q ss_pred             HhcCC-----HHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        173 CKWNN-----TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       173 ~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      +..+.     .+++++|+++|++++.+|..|.||||+|+..|+. +++++|+++
T Consensus       148 ~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~  200 (201)
T 3hra_A          148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT-EISKILAQY  200 (201)
T ss_dssp             HHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-HHHHHHHTC
T ss_pred             HHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH-hHHHHHHhc
Confidence            99998     9999999999999999999999999999999998 788888875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=1.2e-31  Score=199.07  Aligned_cols=158  Identities=22%  Similarity=0.291  Sum_probs=141.8

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      ...++|+.|+..|+.+++++|++. +.+++..|..|.||||+|             +. ++.+++++|++ .+.+++..+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A-------------~~-~~~~~v~~Ll~-~g~~~~~~~   67 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVM-------------KL-GNPEIARRLLL-RGANPDLKD   67 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHC-------------CS-SCHHHHHHHHH-TTCCTTCCC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHH-------------Hc-CcHHHHHHHHH-cCCCCCCCC
Confidence            456899999999999999999987 788999999999999998             66 88999999998 578888899


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCC-ccccCCCCCcHHHHHHhC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD-VNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpL~~a~~~  208 (265)
                      ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..
T Consensus        68 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A           68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY  147 (162)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999987 588999999999999999


Q ss_pred             CChHHHHHHHhhCCCCC
Q psy17862        209 SHSRDVLMILLSHPNVD  225 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~  225 (265)
                      |+. +++++|+++ |+|
T Consensus       148 ~~~-~~~~~Ll~~-GAd  162 (162)
T 1ihb_A          148 GRN-EVVSLMQAN-GAG  162 (162)
T ss_dssp             TCH-HHHHHHHHT-C--
T ss_pred             CCH-HHHHHHHHh-CCC
Confidence            987 788888887 553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=4.1e-31  Score=208.20  Aligned_cols=179  Identities=28%  Similarity=0.384  Sum_probs=165.8

Q ss_pred             CccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChH
Q psy17862         76 TLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSP  135 (265)
Q Consensus        76 ~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~  135 (265)
                      .+++..|..|.||||+|+..|+                    ...+++.|+..|+.+++++|++ .|..++..+..|.||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcH
Confidence            3677889999999999998765                    3469999999999999999998 578888899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHH
Q psy17862        136 LHRACYNGHANIVELLIQWG-ADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV  214 (265)
Q Consensus       136 l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~  214 (265)
                      ||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+. ++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~  159 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV-DI  159 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH-HH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH-HH
Confidence            99999999999999999998 88999999999999999999999999999999999999999999999999999998 78


Q ss_pred             HHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        215 LMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       215 ~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      +++|++. |++++.+|..|.||||+|++.|+.+.++.|++...
T Consensus       160 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  201 (237)
T 3b7b_A          160 AEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS  201 (237)
T ss_dssp             HHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC
Confidence            8999887 89999999999999999999999999988887643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=2.9e-31  Score=198.61  Aligned_cols=157  Identities=36%  Similarity=0.522  Sum_probs=135.4

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..+.++|++|+..|+.++|++|++. +.+++..|..|.||||+|             +..|+.+++++|++ .+.+++..
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~   76 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLA-------------AFNGHLEIVEVLLK-NGADVNAV   76 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCcc
Confidence            3456788899999999999999987 788888888899999998             66788899998888 47788888


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..
T Consensus        77 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence            88889999999999999999999999988888888899999999999999999999999999888888899999999988


Q ss_pred             CChHHHHHHHhhC
Q psy17862        209 SHSRDVLMILLSH  221 (265)
Q Consensus       209 ~~~~~~~~~L~~~  221 (265)
                      |+. +++++|++.
T Consensus       157 ~~~-~~~~~L~~~  168 (169)
T 2y1l_E          157 GNE-DLAEILQKL  168 (169)
T ss_dssp             TCH-HHHHHHHTC
T ss_pred             CCH-HHHHHHHHc
Confidence            887 677888764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=2.7e-31  Score=198.34  Aligned_cols=156  Identities=28%  Similarity=0.436  Sum_probs=147.9

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      .+.||||.|+..|+.+++++|++. +.+++..|..|.||||+|             +..|+.+++++|++. +.+++..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~~-g~~~~~~~   66 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWA-------------AAHGQIAVVEFLLQN-GADPQLLG   66 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHH-------------HHCCCHHHHHHHHHc-CCCCCCcC
Confidence            367999999999999999999998 788999999999999999             678999999999994 88899999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|
T Consensus        67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhC
Q psy17862        210 HSRDVLMILLSH  221 (265)
Q Consensus       210 ~~~~~~~~L~~~  221 (265)
                      +. +++++|+++
T Consensus       147 ~~-~~~~~L~~~  157 (167)
T 3v31_A          147 YR-SVQQVIESH  157 (167)
T ss_dssp             CH-HHHHHHHHH
T ss_pred             cH-HHHHHHHHH
Confidence            98 788888775

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=1.6e-32  Score=226.62  Aligned_cols=174  Identities=18%  Similarity=0.160  Sum_probs=142.4

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCC---HHHHHHHHhcCCC
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHND---SKTLEALLDLDST  123 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~  123 (265)
                      .+..+.||||+|+..|+.++|++|++. |++++.+|..|+||||+|             +..|+   .+.++.|+.....
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A-------------~~~g~~~~~~~~~~ll~~~~~  192 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKA-------------VKSVNNYDSGTFEALLDYLYP  192 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHH-------------HHSSHHHHTTCHHHHHHHHGG
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHH-------------HHhcccccHHHHHHHHHhhhc
Confidence            355688999999999999999999998 899999999999999999             44555   5667777765556


Q ss_pred             CcccCCCCCChHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCCCCCChHHHHHHhcCCHH
Q psy17862        124 LVDAVDKDGYSPLHRACY----NGHANIVELLIQW--------------------GADTQKTTIDGWTPLHSACKWNNTE  179 (265)
Q Consensus       124 ~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~g~t~l~~a~~~~~~~  179 (265)
                      .++..+..|.||||+|+.    .|+.+++++|++.                    |++++..+..|.||||.|+.     
T Consensus       193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-----  267 (327)
T 1sw6_A          193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-----  267 (327)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-----
T ss_pred             cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-----
Confidence            788899999999999999    8999999999987                    88999999999999999985     


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        180 CVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       180 ~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                       +++|++.  +++.+|..|+||||+|+..|+. +++++|+++ |++++.+|..|+||||+|++.|
T Consensus       268 -~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 -LKWIIAN--MLNAQDSNGDTCLNIAARLGNI-SIVDALLDY-GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             -HHHHHHH--TTTCCCTTSCCHHHHHHHHCCH-HHHHHHHHT-TCCTTCCCTTSCCGGGGTCC--
T ss_pred             -HHHHHHh--CCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence             8889888  5888999999999999999998 789999988 9999999999999999998765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=1.2e-31  Score=202.58  Aligned_cols=168  Identities=23%  Similarity=0.350  Sum_probs=154.1

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      ...++|+.|+..|+.+.|++|++..+.+++..|..|.||||+|             +..++.+++++|++ .+.+++..+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~~   69 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA-------------CREGRSAVVEMLIM-RGARINVMN   69 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH-------------HHcCcHHHHHHHHH-cCCCCCCcC
Confidence            4678999999999999999999998889999999999999999             67899999999998 588899999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..+
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           70 RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ChHHHHHHHhhCCCCCCcccCCCC
Q psy17862        210 HSRDVLMILLSHPNVDPHILSTSN  233 (265)
Q Consensus       210 ~~~~~~~~L~~~~~~~~~~~~~~g  233 (265)
                      +. .++++|++. |.+++..+.++
T Consensus       150 ~~-~~~~~L~~~-g~~~~~~~~~~  171 (179)
T 3f6q_A          150 RE-LLRERAEKM-GQNLNRIPYKD  171 (179)
T ss_dssp             HH-HHHHHHHHT-TCCCSCBCCCC
T ss_pred             HH-HHHHHHHHh-hcCcccCCccc
Confidence            76 788999887 88888766554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=7.3e-32  Score=211.70  Aligned_cols=159  Identities=27%  Similarity=0.358  Sum_probs=148.6

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      .+..+.||||+|+..|+.+++++|++. +.+++..|..|.||||+|             +..++.+++++|++ .+.+++
T Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-------------~~~~~~~~~~~Ll~-~g~~~~  133 (231)
T 3aji_A           69 KDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYA-------------ASKNRHEIAVMLLE-GGANPD  133 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTT
T ss_pred             cCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCC
Confidence            345678999999999999999999998 889999999999999999             67899999999998 578889


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus       134 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK  213 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCChHHHHHHHhhC
Q psy17862        207 SHSHSRDVLMILLSH  221 (265)
Q Consensus       207 ~~~~~~~~~~~L~~~  221 (265)
                      ..++. .++++|.++
T Consensus       214 ~~~~~-~i~~lL~~~  227 (231)
T 3aji_A          214 GGLGL-ILKRLAEGE  227 (231)
T ss_dssp             HHHHH-HHHHHHHHH
T ss_pred             hhHHH-HHHHHHccc
Confidence            87665 788888765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=6.2e-31  Score=207.55  Aligned_cols=177  Identities=24%  Similarity=0.310  Sum_probs=160.1

Q ss_pred             cccCCCCCCcHHHHHHHcCc------------------------CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCC
Q psy17862         78 VDAVDKDGYSPLHRACYNDK------------------------NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGY  133 (265)
Q Consensus        78 ~~~~d~~g~tpl~~A~~~~~------------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  133 (265)
                      ++.+|.+|.||||+|+..|+                        ...+++.|+..|+.+++++|++ .|.+++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCC
Confidence            35678999999999998765                        3479999999999999999999 5788899999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhC
Q psy17862        134 SPLHRACYNGHANIVELLIQWGA----DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-NGGLTPLHLAASH  208 (265)
Q Consensus       134 t~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~a~~~  208 (265)
                      ||||+|+..++.+++++|++.++    +++..+..|.||||+|+..++.+++++|++.|++++..+ ..|.||||+|+..
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence            99999999999999999999987    788889999999999999999999999999999999988 7899999999999


Q ss_pred             CChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      |+. +++++|++. |++++..|..|.||||+|+..|+.+.++.|++.-.
T Consensus       161 ~~~-~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  207 (241)
T 1k1a_A          161 NSL-SMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA  207 (241)
T ss_dssp             TCH-HHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            998 788999887 89999999999999999999999999999887643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=3.7e-31  Score=202.08  Aligned_cols=158  Identities=25%  Similarity=0.347  Sum_probs=149.1

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      +..+.||||+|+..|+.+++++|++. +.+++..|..|.||||+|             +..++.+++++|+.. +.+++.
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~~-g~~~~~   96 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWA-------------VKNNRLGIAEKLLSK-GSNVNT   96 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHHH-TCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHH-------------HHcCCHHHHHHHHHC-CCCCCC
Confidence            45678999999999999999999998 889999999999999999             678999999999994 788999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.
T Consensus        97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  176 (192)
T 2rfm_A           97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI  176 (192)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhhC
Q psy17862        208 HSHSRDVLMILLSH  221 (265)
Q Consensus       208 ~~~~~~~~~~L~~~  221 (265)
                      .|+. +++++|++.
T Consensus       177 ~~~~-~~v~~Ll~~  189 (192)
T 2rfm_A          177 FGRQ-EVIKIFTEV  189 (192)
T ss_dssp             TTCH-HHHHHHHHH
T ss_pred             hCcH-HHHHHHHhc
Confidence            9998 788888764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=5.5e-31  Score=197.59  Aligned_cols=160  Identities=24%  Similarity=0.291  Sum_probs=147.8

Q ss_pred             CCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q psy17862         85 GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID  164 (265)
Q Consensus        85 g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  164 (265)
                      +.||||.|             +..|+.+.++.|+..++..++..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus         2 ~~~~L~~A-------------~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   68 (172)
T 3v30_A            2 DSLSIHQL-------------AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE   68 (172)
T ss_dssp             --CCHHHH-------------HHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             chhhHHHH-------------HHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhccc
Confidence            45788888             77999999999999776668889999999999999999999999999999999999999


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       165 g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      |.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+. +++++|++. |++++.+|..|.||||+|+..|
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A           69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV-KCVEALLAR-GADLTTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCccccCCCCCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999998 788899887 8999999999999999999999


Q ss_pred             Cchhhhhcchhhhhc
Q psy17862        245 IHYGLFETIEPCFNN  259 (265)
Q Consensus       245 ~~~~~~~ll~~~~~~  259 (265)
                      +.+.++.|++...+.
T Consensus       147 ~~~~~~~L~~~~~~~  161 (172)
T 3v30_A          147 YRKVQQVIENHILKL  161 (172)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            888888888775543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=7.1e-32  Score=218.60  Aligned_cols=183  Identities=17%  Similarity=0.136  Sum_probs=167.2

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      +.||||+|+..|+.+++++|++. |++++..|..|.||||+|             +..|+.+++++|++. |.+++..+.
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~~-ga~~~~~~~  126 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYA-------------VDSGNMQTVKLFVKK-NWRLMFYGK  126 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHHH-CGGGGGCSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHH-------------HHcCCHHHHHHHHhc-CCCCCccCC
Confidence            78999999999999999999998 899999999999999999             678999999999995 889999999


Q ss_pred             CC-ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcH-HHHHHhC
Q psy17862        131 DG-YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTP-LHLAASH  208 (265)
Q Consensus       131 ~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp-L~~a~~~  208 (265)
                      .| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..++.+++++|+++|++++.++..|+|| ||+|+..
T Consensus       127 ~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHc
Confidence            99 89999999999999999999999876332 289999999999999999999999999999999999998 9999999


Q ss_pred             CChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhh
Q psy17862        209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      |+. +++++|+++ |++++..+.       .|+..|+.+.++.|++.-.+
T Consensus       206 ~~~-~~v~~Ll~~-gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          206 KDI-EMLQALFKY-DINIYSANL-------ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             TCH-HHHHHHTTS-CBCSTTTTG-------GGGTTTCHHHHHHHHHHHHH
T ss_pred             CCH-HHHHHHHHc-CCCCCCCCh-------hhhhcCCHHHHHHHHHcCCC
Confidence            997 899999998 899999883       56778888888888887544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.2e-30  Score=195.21  Aligned_cols=157  Identities=34%  Similarity=0.447  Sum_probs=145.4

Q ss_pred             CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy17862         82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT  161 (265)
Q Consensus        82 d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  161 (265)
                      ...+.+||++|             +..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus        11 ~~~~~~~l~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   76 (169)
T 2y1l_E           11 GSDLGKKLLEA-------------ARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV   76 (169)
T ss_dssp             --CHHHHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCcccchHHHH-------------HHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            34566778887             78999999999999 57889999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHh
Q psy17862        162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT  241 (265)
Q Consensus       162 ~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~  241 (265)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+
T Consensus        77 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E           77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL-EIVEVLLKN-GADVNAQDKFGKTAFDISI  154 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 789999988 8999999999999999999


Q ss_pred             hcCCchhhhhcch
Q psy17862        242 RSGIHYGLFETIE  254 (265)
Q Consensus       242 ~~~~~~~~~~ll~  254 (265)
                      ..|+.+.++.|++
T Consensus       155 ~~~~~~~~~~L~~  167 (169)
T 2y1l_E          155 DNGNEDLAEILQK  167 (169)
T ss_dssp             HTTCHHHHHHHHT
T ss_pred             HhCCHHHHHHHHH
Confidence            9998888877765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.7e-30  Score=191.23  Aligned_cols=150  Identities=35%  Similarity=0.455  Sum_probs=100.8

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD  131 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  131 (265)
                      +++|+.|+..|+.++|++|++. +.+++ .+..|.||||+|             +..|+.+++++|++ .+.+++..+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~~~~   66 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLA-------------AQYGHFSTTEVLLR-AGVSRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHH-------------HHHTCHHHHHHHHT-TTCCTTCCCTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCCCCCC
Confidence            4566777777777777777766 44444 356667777777             45666677777666 45566666666


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCCh
Q psy17862        132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS  211 (265)
Q Consensus       132 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~  211 (265)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.
T Consensus        67 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            77777777777777777777777777666666677777777777777777777777777766666677777777776665


Q ss_pred             HHHHHHH
Q psy17862        212 RDVLMIL  218 (265)
Q Consensus       212 ~~~~~~L  218 (265)
                       +++++|
T Consensus       147 -~i~~~L  152 (153)
T 1awc_B          147 -DLAEIL  152 (153)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHh
Confidence             455554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=5.6e-31  Score=196.20  Aligned_cols=157  Identities=33%  Similarity=0.467  Sum_probs=123.1

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      +.+.++|+.|+..|+.+.+++|++..+.+++..+..|.||||+|             +..++.+++++|++ .+.+++..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~   71 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-------------AGYNRVSVVEYLLQ-HGADVHAK   71 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH-------------HHcChHHHHHHHHh-cCCCCCcc
Confidence            34567788888888888888888776777777777788888888             55777888888887 46777777


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+. 
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-  150 (165)
T 3twr_A           72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-  150 (165)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-
Confidence            7788888888888888888888888888888888888888888888888888888888888888888888888888665 


Q ss_pred             CChHHHHHHHhhC
Q psy17862        209 SHSRDVLMILLSH  221 (265)
Q Consensus       209 ~~~~~~~~~L~~~  221 (265)
                      ++. +++++|++.
T Consensus       151 ~~~-~i~~~L~~~  162 (165)
T 3twr_A          151 GDT-DIQDLLRGD  162 (165)
T ss_dssp             TCH-HHHHHHHTC
T ss_pred             CCh-HHHHHHhhc
Confidence            565 677777765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=8.7e-31  Score=193.31  Aligned_cols=154  Identities=25%  Similarity=0.300  Sum_probs=142.9

Q ss_pred             CCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q psy17862         85 GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID  164 (265)
Q Consensus        85 g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  164 (265)
                      +.||||+|             +..|+.+.++.|+...+.+++..+..|.||||+ +..|+.+++++|+++|++++.++..
T Consensus         2 ~~~~L~~A-------------~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~   67 (156)
T 1bd8_A            2 AGDRLSGA-------------AARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTS   67 (156)
T ss_dssp             HHHHHHHH-------------HHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cchHHHHH-------------HHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            34677777             889999999999997666888999999999999 9999999999999999999999999


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        165 GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       165 g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      |.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+. +++++|++.  ++++.+|..|.|||++|+..|
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A           68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLAAE--SDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH-HHHHHHHTT--SCTTCCCTTSCCHHHHHHHSC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChH-HHHHHHHhc--cCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999998 788888887  889999999999999999999


Q ss_pred             Cchhhhhcchh
Q psy17862        245 IHYGLFETIEP  255 (265)
Q Consensus       245 ~~~~~~~ll~~  255 (265)
                      +.+.++.|+++
T Consensus       145 ~~~~v~~Ll~~  155 (156)
T 1bd8_A          145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             cHHHHHHHHhh
Confidence            88888888764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=4.6e-31  Score=196.65  Aligned_cols=157  Identities=26%  Similarity=0.356  Sum_probs=143.9

Q ss_pred             CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy17862         82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT  161 (265)
Q Consensus        82 d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  161 (265)
                      |..|.|||+.|             +..|+.++++.|+...+...+..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus         5 ~~~~~~~l~~A-------------~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   71 (165)
T 3twr_A            5 NSEADRQLLEA-------------AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK   71 (165)
T ss_dssp             -CHHHHHHHHH-------------HHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cchhhHHHHHH-------------HHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc
Confidence            56677888888             77999999999999878888888899999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHh
Q psy17862        162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT  241 (265)
Q Consensus       162 ~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~  241 (265)
                      +..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~  149 (165)
T 3twr_A           72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY-EICKLLLQH-GADPTKKNRDGNTPLDLVK  149 (165)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCTGGGSC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCCcccCCCCCChhHhHh
Confidence            99999999999999999999999999999999999999999999999998 788999887 8999999999999999987


Q ss_pred             hcCCchhhhhcch
Q psy17862        242 RSGIHYGLFETIE  254 (265)
Q Consensus       242 ~~~~~~~~~~ll~  254 (265)
                      . |+.+.+..|++
T Consensus       150 ~-~~~~i~~~L~~  161 (165)
T 3twr_A          150 D-GDTDIQDLLRG  161 (165)
T ss_dssp             T-TCHHHHHHHHT
T ss_pred             c-CChHHHHHHhh
Confidence            7 76766665554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2.5e-30  Score=190.83  Aligned_cols=154  Identities=27%  Similarity=0.375  Sum_probs=144.4

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      ++++|++|+..|+.+.+++|++..+.+++..|..|.||||+ +.             .|+.+++++|++ .|.+++..+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~-------------~~~~~~v~~Ll~-~g~~~~~~~~   66 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MM-------------FGSTAIALELLK-QGASPNVQDT   66 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SC-------------TTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HH-------------cCCHHHHHHHHH-CCCCCCCcCC
Confidence            46899999999999999999998667899999999999999 54             588999999998 5888999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH  210 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~  210 (265)
                      .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++. ++++.+|..|.||||+|+..|+
T Consensus        67 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc
Confidence            999999999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             hHHHHHHHhhC
Q psy17862        211 SRDVLMILLSH  221 (265)
Q Consensus       211 ~~~~~~~L~~~  221 (265)
                      . +++++|+++
T Consensus       146 ~-~~v~~Ll~~  155 (156)
T 1bd8_A          146 Q-DLVDILQGH  155 (156)
T ss_dssp             H-HHHHHHHTT
T ss_pred             H-HHHHHHHhh
Confidence            8 788888764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.9e-30  Score=189.99  Aligned_cols=142  Identities=30%  Similarity=0.341  Sum_probs=132.3

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +..|+.+++++|++. +.+.+ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+
T Consensus        10 ~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   87 (153)
T 1awc_B           10 ARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            889999999999995 55554 5888999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhh
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFE  251 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  251 (265)
                      ++|++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+..|+.+.++.
T Consensus        88 ~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           88 KHGADVNAKDMLKMTALHWATEHNHQ-EVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999998 789999988 89999999999999999999997766654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=3.3e-30  Score=202.41  Aligned_cols=185  Identities=23%  Similarity=0.215  Sum_probs=154.6

Q ss_pred             HHHHHhhcCceeeeeeecccCcccc-cccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCcc-----ccCCCCCCcHH
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVG-IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLV-----DAVDKDGYSPL   89 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-----~~~d~~g~tpl   89 (265)
                      .|..|++.|+++.....     +.. ..+....+..+.||||+|+..|+.+++++|++. +.++     +..|..|.|||
T Consensus         6 ~L~~A~~~g~~~~v~~L-----l~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            6 PLLLAAKENDVQALSKL-----LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             HHHHHHHTTCHHHHHHH-----HTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHH
T ss_pred             HHHHHHHcCCHHHHHHH-----HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHH
Confidence            35566677665332221     111 112223345678999999999999999999998 6665     66778999999


Q ss_pred             HHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC-------------CCChHHHHHHHcCCHHHHHHHHHcCC
Q psy17862         90 HRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK-------------DGYSPLHRACYNGHANIVELLIQWGA  156 (265)
Q Consensus        90 ~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~~~  156 (265)
                      |+|             +..|+.+++++|++ .+.+++..+.             .|.||||+|+..|+.+++++|+++|+
T Consensus        80 ~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  145 (232)
T 2rfa_A           80 HIA-------------VINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA  145 (232)
T ss_dssp             HHH-------------HHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHH-------------HHcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999             67899999999999 4777777655             79999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHH----HHHHhcCCCc------cccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        157 DTQKTTIDGWTPLHSACKWNNTECV----IVLLNYGVDV------NAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       157 ~~~~~~~~g~t~l~~a~~~~~~~~v----~~Ll~~g~~~------~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      +++.+|..|.||||+|+..++.+++    ++|++.|+++      +.+|..|.||||+|+..|+. +++++|+++
T Consensus       146 ~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~-~~v~~Ll~~  219 (232)
T 2rfa_A          146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI-VMFQHLMQK  219 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH-HHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH-HHHHHHHhc
Confidence            9999999999999999999999988    9999999988      58899999999999999998 788888886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.8e-30  Score=196.13  Aligned_cols=158  Identities=25%  Similarity=0.296  Sum_probs=144.7

Q ss_pred             CCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy17862         83 KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT  162 (265)
Q Consensus        83 ~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  162 (265)
                      ..+.+||+.|             +..|+.++++.|+...+.+++..+..|.||||+|+..|+.+++++|++.|++++..+
T Consensus         3 ~~~~~~l~~A-------------~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   69 (179)
T 3f6q_A            3 PEFMDDIFTQ-------------CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN   69 (179)
T ss_dssp             ----CCHHHH-------------HHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHHH-------------HHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence            4567888888             779999999999998888899999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhh
Q psy17862        163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATR  242 (265)
Q Consensus       163 ~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~  242 (265)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|+++ |++++.+|..|.||+++|+.
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           70 RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD-QVAEDLVAN-GALVSICNKYGEMPVDKAKA  147 (179)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCSSBCCTTSCCGGGGSCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCcchhccCCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999997 789999988 89999999999999999999


Q ss_pred             cCCchhhhhcchh
Q psy17862        243 SGIHYGLFETIEP  255 (265)
Q Consensus       243 ~~~~~~~~~ll~~  255 (265)
                      .++...+..+++.
T Consensus       148 ~~~~~~~~~L~~~  160 (179)
T 3f6q_A          148 PLRELLRERAEKM  160 (179)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9977666666654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.7e-31  Score=211.51  Aligned_cols=205  Identities=22%  Similarity=0.269  Sum_probs=157.7

Q ss_pred             HHHHHHHhhcCceeeeeeecccCcccccccCC-----CcCCCCcccHHHHHhc---CChHHHHHhhccCCCc-------c
Q psy17862         14 MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSR-----NPQDKNKRNILEAAEH---NDSKTLEALLDHDSTL-------V   78 (265)
Q Consensus        14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~-------~   78 (265)
                      ...|..|++.|+.+......  +.......+.     ..+..+.||||+|+..   |+.++|++|++. |++       +
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll--~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i   90 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLL--PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFV   90 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHH--HHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHH--HHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHh
Confidence            35688899998874422211  1110111111     2345788999999987   999999999997 433       2


Q ss_pred             c----cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC--------------CCChHHHHHH
Q psy17862         79 D----AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK--------------DGYSPLHRAC  140 (265)
Q Consensus        79 ~----~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~g~t~l~~a~  140 (265)
                      +    ..|..|.||||+|             +..|+.+++++|++ .|.+++..+.              .|.||||+|+
T Consensus        91 ~~~~~~~d~~g~tpL~~A-------------~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  156 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIA-------------IERRNMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA  156 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred             hcccccccCCCCCHHHHH-------------HHcCCHHHHHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHH
Confidence            2    2567899999999             67899999999999 4888888876              7999999999


Q ss_pred             HcCCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHhcCCCcc-------ccCCCCCcH
Q psy17862        141 YNGHANIVELLIQ---WGADTQKTTIDGWTPLHSACKWNN---------TECVIVLLNYGVDVN-------AQTNGGLTP  201 (265)
Q Consensus       141 ~~~~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~g~tp  201 (265)
                      ..|+.+++++|++   +|++++.++..|.||||+|+..++         .+++++|+++|++++       .+|..|+||
T Consensus       157 ~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~Tp  236 (273)
T 2pnn_A          157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP  236 (273)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH
T ss_pred             HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCH
Confidence            9999999999999   999999999999999999999988         899999999999986       489999999


Q ss_pred             HHHHHhCCChHHHHHHHhhCCCC-CCcccCCCCccHH
Q psy17862        202 LHLAASHSHSRDVLMILLSHPNV-DPHILSTSNESAR  237 (265)
Q Consensus       202 L~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~l  237 (265)
                      ||+|+..|+. +++++|+++ |+ |+......+.+|-
T Consensus       237 L~~A~~~g~~-~iv~~Ll~~-ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          237 LALAASSGKI-GVLAYILQR-EIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHTTCH-HHHHHHHHH-HTC-------------
T ss_pred             HHHHHHhChH-HHHHHHHHC-CCCCchhhhhhhhhcc
Confidence            9999999998 788899888 56 8888877777664

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=207.83  Aligned_cols=168  Identities=24%  Similarity=0.361  Sum_probs=151.2

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      .+..+.||||+|+..|+.++|++|++.+..+++..|..|.||||+|+....        ...++.++++.|+.. +...+
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~--------~~~~~~~~v~~Ll~~-g~~~~  177 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL--------KTQDDIETVLQLFRL-GNINA  177 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC--------CSHHHHHHHHHHHHH-SCTTC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh--------hhhhhHHHHHHHHHc-CCCcc
Confidence            345688999999999999999999999445999999999999999954322        256889999999985 67777


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCcHHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN-YGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~a  205 (265)
                      ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|
T Consensus       178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A  257 (276)
T 4hbd_A          178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA  257 (276)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence            888899999999999999999999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             HhCCChHHHHHHHhhCCCC
Q psy17862        206 ASHSHSRDVLMILLSHPNV  224 (265)
Q Consensus       206 ~~~~~~~~~~~~L~~~~~~  224 (265)
                      +..|+. +++++|+++.++
T Consensus       258 ~~~g~~-~iv~~Ll~~~~i  275 (276)
T 4hbd_A          258 LDAGQS-EIASMLYSRMNI  275 (276)
T ss_dssp             HHHTCH-HHHHHHHHHCCC
T ss_pred             HHcCCH-HHHHHHHhccCC
Confidence            999998 788888887553

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3e-30  Score=191.56  Aligned_cols=155  Identities=25%  Similarity=0.306  Sum_probs=142.9

Q ss_pred             CCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy17862         84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI  163 (265)
Q Consensus        84 ~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  163 (265)
                      ...||||+|             +..|+.+++++|++ .+.+++..+..|.||||+|+. |+.+++++|++.|++++..+.
T Consensus         4 ~~~~~L~~A-------------~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~   68 (162)
T 1ihb_A            4 PWGNELASA-------------AARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR   68 (162)
T ss_dssp             -CHHHHHHH-------------HHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT
T ss_pred             hHhhHHHHH-------------HHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC
Confidence            355777777             78999999999998 578889999999999999999 999999999999999999999


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCC-CcccCCCCccHHHHHhh
Q psy17862        164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD-PHILSTSNESAREIATR  242 (265)
Q Consensus       164 ~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~l~~a~~  242 (265)
                      .|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+. +++++|+++ |.+ ++..+..|.||||+|+.
T Consensus        69 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~  146 (162)
T 1ihb_A           69 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL-RVVEFLVKH-TASNVGHRNHKGDTACDLARL  146 (162)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHH-SCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHc-cCCCCCCcCCCCCcHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 788888887 565 69999999999999999


Q ss_pred             cCCchhhhhcchh
Q psy17862        243 SGIHYGLFETIEP  255 (265)
Q Consensus       243 ~~~~~~~~~ll~~  255 (265)
                      .|+.+.++.|++.
T Consensus       147 ~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          147 YGRNEVVSLMQAN  159 (162)
T ss_dssp             TTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHh
Confidence            9998888888764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.1e-30  Score=206.58  Aligned_cols=189  Identities=21%  Similarity=0.192  Sum_probs=156.4

Q ss_pred             HHHHHHhhcCceeeeeeecccCcccccccCCC-----cCCCCcccHHHHHhc---CChHHHHHhhccCCCcccc------
Q psy17862         15 QQLQESIRDGSFNIGQVSAWDDDVVGIEDSRN-----PQDKNKRNILEAAEH---NDSKTLEALLDHDSTLVDA------   80 (265)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~------   80 (265)
                      ..|..|++.|+.+...  .+.+.+.....+.+     .+..+.||||+|+..   |+.++|++|++. +.+++.      
T Consensus         4 t~L~~A~~~g~~~~v~--~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~   80 (256)
T 2etb_A            4 DRLFSVVSRGVPEELT--GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVN   80 (256)
T ss_dssp             HHHHHHHHHTCGGGGT--THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGG
T ss_pred             cHHHHHHHcCCHHHHH--HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcc
Confidence            3567788888763221  11111111122222     356788999999999   999999999987 555543      


Q ss_pred             -----CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCC-------------CChHHHHHHHc
Q psy17862         81 -----VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD-------------GYSPLHRACYN  142 (265)
Q Consensus        81 -----~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-------------g~t~l~~a~~~  142 (265)
                           .|..|.||||+|             +..|+.+++++|++ .|.+++..+..             |.||||+|+..
T Consensus        81 ~~~~~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  146 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIA-------------IEKRSLQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT  146 (256)
T ss_dssp             CCCCSTTTTTCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred             cccccccccCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence                 346799999999             67899999999999 57888888876             99999999999


Q ss_pred             CCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHh--cCCHH-------HHHHHHhcCCCc-------cccCCCCCcHHH
Q psy17862        143 GHANIVELLIQ---WGADTQKTTIDGWTPLHSACK--WNNTE-------CVIVLLNYGVDV-------NAQTNGGLTPLH  203 (265)
Q Consensus       143 ~~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~g~tpL~  203 (265)
                      |+.+++++|++   +|++++.+|..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||
T Consensus       147 ~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence            99999999999   999999999999999999999  78888       999999999999       899999999999


Q ss_pred             HHHhCCChHHHHHHHhhC
Q psy17862        204 LAASHSHSRDVLMILLSH  221 (265)
Q Consensus       204 ~a~~~~~~~~~~~~L~~~  221 (265)
                      +|+..|+. +++++|+++
T Consensus       227 ~A~~~g~~-~~v~~Ll~~  243 (256)
T 2etb_A          227 LAAKEGKI-EIFRHILQR  243 (256)
T ss_dssp             HHHHTTCH-HHHHHHHHH
T ss_pred             HHHHhCCH-HHHHHHHhC
Confidence            99999998 788888876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-29  Score=206.14  Aligned_cols=184  Identities=23%  Similarity=0.372  Sum_probs=160.0

Q ss_pred             HHHhcCChHHHHHhhccCCCcccc---------CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         57 EAAEHNDSKTLEALLDHDSTLVDA---------VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        57 ~A~~~g~~~~v~~ll~~~~~~~~~---------~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      .++..+..+.++.++... ..+..         .+..|.||||+|             +..|+.+++++|+. .|.+++.
T Consensus         4 ~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~l~~A-------------~~~g~~~~v~~Ll~-~g~~~~~   68 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSE-TDLEPPVVKRKKTKVKFDDGAVFLAA-------------CSSGDTEEVLRLLE-RGADINY   68 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TSSCCSCCCCSCCCCEECHHHHHHHH-------------HHHTCHHHHHHHHH-HCCCTTC
T ss_pred             hHHHHHHHHHHHHHHccc-cccccccccCcccccccCCccHHHHH-------------HHcCCHHHHHHHHH-cCCCCcc
Confidence            467778888888888763 22221         234567899999             77899999999998 4788999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCC-----------
Q psy17862        128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN-----------  196 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~-----------  196 (265)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++.           
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999998876654           


Q ss_pred             -------------------------------------------------CCCcHHHHHHhCCChHHHHHHHhhCCCCCCc
Q psy17862        197 -------------------------------------------------GGLTPLHLAASHSHSRDVLMILLSHPNVDPH  227 (265)
Q Consensus       197 -------------------------------------------------~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~  227 (265)
                                                                       .|.||||+|+..|+. +++++|++. |++++
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~-g~d~~  226 (299)
T 1s70_B          149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EVLKLLIQA-RYDVN  226 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-HHHHHHHTT-TCCTT
T ss_pred             cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH-HHHHHHHHc-CCCCC
Confidence                                                             466888889999887 788899887 89999


Q ss_pred             ccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        228 ILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       228 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      .+|..|.||||+|+..|+.+.++.|++.-.
T Consensus       227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence            999999999999999999999999888743

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=5.8e-31  Score=207.93  Aligned_cols=179  Identities=21%  Similarity=0.287  Sum_probs=132.2

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..+.|||+.|+..|+.+.++.|++. |++++.. ..|.||||+|             +..|+.++++.|+. .+.+++..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~   66 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDS-------------SLEGEFDLVQRIIY-EVDDPSLP   66 (239)
T ss_dssp             ------------------------------------CHHHHHHH-------------HHHTCHHHHHHHTS-TTSSCCCC
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHH-------------HHcCCHHHHHHHHH-cCCCCCCc
Confidence            4578999999999999999999998 8888864 7889999999             77899999999998 56789999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCC-cHHHHH--
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL-TPLHLA--  205 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~-tpL~~a--  205 (265)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|. ||||+|  
T Consensus        67 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE  146 (239)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877 999999  


Q ss_pred             HhCCChHHHHHHHhhCCCCCCccc---------CCCCccHHHHHhhcCC
Q psy17862        206 ASHSHSRDVLMILLSHPNVDPHIL---------STSNESAREIATRSGI  245 (265)
Q Consensus       206 ~~~~~~~~~~~~L~~~~~~~~~~~---------~~~g~t~l~~a~~~~~  245 (265)
                      +..|+. +++++|+.. +++++..         +..+.++.+++.+.|.
T Consensus       147 ~~~g~~-~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          147 MEEGYT-QCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             SSTTCC-CHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhhccH-HHHHHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            777887 678888876 6776665         6678999999988885

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=7.9e-30  Score=203.71  Aligned_cols=190  Identities=22%  Similarity=0.211  Sum_probs=155.3

Q ss_pred             HHHHHHhhcCceeeeeeecccCcccccccCC-----CcCCCCcccHHHHH---hcCChHHHHHhhccCC----------C
Q psy17862         15 QQLQESIRDGSFNIGQVSAWDDDVVGIEDSR-----NPQDKNKRNILEAA---EHNDSKTLEALLDHDS----------T   76 (265)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~A~---~~g~~~~v~~ll~~~~----------~   76 (265)
                      ..|..|++.|+.+....  +.+.+.....+.     ..+..+.||||+|+   ..|+.++|++|++.+.          .
T Consensus         7 ~~L~~A~~~g~~~~v~~--ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEG--LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             HHHHHHHHHTCGGGGTT--HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHH--HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            46788888888643211  111111111111     12255889999999   7799999999999721          3


Q ss_pred             ccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC--------------CCCChHHHHHHHc
Q psy17862         77 LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD--------------KDGYSPLHRACYN  142 (265)
Q Consensus        77 ~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~g~t~l~~a~~~  142 (265)
                      .++..|..|.||||+|             +..|+.+++++|++ .|.+++..+              ..|.||||+|+..
T Consensus        85 ~~~~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  150 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIA-------------IERRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT  150 (260)
T ss_dssp             CBCCSSEESBCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred             cccccccCCCCHHHHH-------------HHcCCHHHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHc
Confidence            3455566899999999             67899999999999 588888888              6899999999999


Q ss_pred             CCHHHHHHHHH---cCCCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHhcCCCc-------cccCCCCCcHHH
Q psy17862        143 GHANIVELLIQ---WGADTQKTTIDGWTPLHSACKWNN---------TECVIVLLNYGVDV-------NAQTNGGLTPLH  203 (265)
Q Consensus       143 ~~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~g~tpL~  203 (265)
                      |+.+++++|++   +|++++.+|..|.||||+|+..++         .+++++|+++|+++       +.+|..|+||||
T Consensus       151 g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             CCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence            99999999999   999999999999999999998887         79999999999998       679999999999


Q ss_pred             HHHhCCChHHHHHHHhhC
Q psy17862        204 LAASHSHSRDVLMILLSH  221 (265)
Q Consensus       204 ~a~~~~~~~~~~~~L~~~  221 (265)
                      +|+..|+. +++++|+++
T Consensus       231 ~A~~~g~~-~~v~~Ll~~  247 (260)
T 3jxi_A          231 MAAKTGKI-GIFQHIIRR  247 (260)
T ss_dssp             HHHHTTCH-HHHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHh
Confidence            99999998 788888886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=193.39  Aligned_cols=198  Identities=23%  Similarity=0.277  Sum_probs=165.6

Q ss_pred             HHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccC-CCCCCcHHHHHHH
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAV-DKDGYSPLHRACY   94 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~tpl~~A~~   94 (265)
                      .|..|++.|+++......     ....+....+..+.+||++|+..|+.+++++|++. +.+++.. +..|.||||+|+.
T Consensus        12 ~l~~A~~~g~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A           12 DIVKATQYGIYERCRELV-----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             CHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHH-----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHH
Confidence            366777777764432221     11122223345678999999999999999999998 5566544 4559999999998


Q ss_pred             cCc--------------------CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCC-HHHHHHHHH
Q psy17862         95 NDK--------------------NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGH-ANIVELLIQ  153 (265)
Q Consensus        95 ~~~--------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~  153 (265)
                      .++                    ...+++.|+..++.+++++|++ .+.+++..+..|.||||+|+..++ .+++++|++
T Consensus        86 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  164 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT  164 (240)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence            754                    3479999999999999999999 578899999999999999997666 899999999


Q ss_pred             cCCCCCCCCC-CCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        154 WGADTQKTTI-DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       154 ~~~~~~~~~~-~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      .|++++..+. .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+. +++++|++.
T Consensus       165 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~v~~L~~~  232 (240)
T 3eu9_A          165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV-WMINHLQEA  232 (240)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHHH
T ss_pred             cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH-HHHHHHHHh
Confidence            9999999887 899999999999999999999999999999999999999999999998 788888876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-29  Score=208.96  Aligned_cols=178  Identities=14%  Similarity=0.071  Sum_probs=145.6

Q ss_pred             cHHHHHhcCChHHHHHhhccCCCcccc-CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCC
Q psy17862         54 NILEAAEHNDSKTLEALLDHDSTLVDA-VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDG  132 (265)
Q Consensus        54 ~l~~A~~~g~~~~v~~ll~~~~~~~~~-~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  132 (265)
                      ..+.|+..+..++++.|+.. |++++. .|..|+||||+|             +..|+.+++++|++ .|++++.++..|
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh~A-------------a~~g~~~~v~~Ll~-~Gad~n~~d~~g  164 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLHWL-------------TSIANLELVKHLVK-HGSNRLYGDNMG  164 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTBCCTTC
T ss_pred             hhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHHHH-------------HHcCCHHHHHHHHH-cCCCCCCcCCCC
Confidence            34677777778888888877 899999 899999999999             67899999999999 588999999999


Q ss_pred             ChHHHHHHHcCC---HHHHHHHHHcC-CCCCCCCCCCChHHHHHHh----cCCHHHHHHHHhc-----------------
Q psy17862        133 YSPLHRACYNGH---ANIVELLIQWG-ADTQKTTIDGWTPLHSACK----WNNTECVIVLLNY-----------------  187 (265)
Q Consensus       133 ~t~l~~a~~~~~---~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~----~~~~~~v~~Ll~~-----------------  187 (265)
                      .||||+|+..|+   .++++.|++++ ++++.++..|.||||+|+.    .++.+++++|++.                 
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence            999999999998   68888888886 6789999999999999999    8999999999987                 


Q ss_pred             ---CCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        188 ---GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       188 ---g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                         |++++.++..|.||||+|+.       +++|++.   +++.+|..|.||||+|+..|+.+.++.||+.-
T Consensus       245 ~~~g~~~~~~~~~g~t~L~~a~~-------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G  306 (327)
T 1sw6_A          245 NEKESKPNDKNGERKDSILENLD-------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYG  306 (327)
T ss_dssp             ---------------CHHHHHCS-------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             hcccCCcccccccCCChhHHHHH-------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence               89999999999999999985       6677765   57899999999999999999999999988764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=2.4e-28  Score=180.31  Aligned_cols=146  Identities=23%  Similarity=0.253  Sum_probs=118.2

Q ss_pred             cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy17862         78 VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD  157 (265)
Q Consensus        78 ~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  157 (265)
                      ++..+..|.||||+|             +..|+.+++++|++ .+.+++..+..|.||||+|+ .|+.+++++|+++|++
T Consensus         5 ~~~~~~~~~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~   69 (156)
T 1bi7_B            5 AGSSMEPSADWLATA-------------AARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE   69 (156)
T ss_dssp             -----CCSTTHHHHH-------------HHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred             ccCCCccchHHHHHH-------------HHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence            345578899999999             77899999999998 48889999999999999985 9999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccH
Q psy17862        158 TQKTTIDGWT-PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA  236 (265)
Q Consensus       158 ~~~~~~~g~t-~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~  236 (265)
                      ++.++..|.| |||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|+++ |++++..+..|.||
T Consensus        70 ~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR-DVARYLRAA-AGGTRGSNHARIDA  147 (156)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH-HHHHHHSSC-C-------------
T ss_pred             CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH-HHHHHHHHc-CCCCCccCcCcCcc
Confidence            9999999999 99999999999999999999999999999999999999999998 799999988 99999999999999


Q ss_pred             HHHH
Q psy17862        237 REIA  240 (265)
Q Consensus       237 l~~a  240 (265)
                      .+-+
T Consensus       148 ~~~~  151 (156)
T 1bi7_B          148 AEGP  151 (156)
T ss_dssp             ----
T ss_pred             cccC
Confidence            8754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=4.3e-28  Score=174.85  Aligned_cols=131  Identities=23%  Similarity=0.316  Sum_probs=87.3

Q ss_pred             CCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy17862         75 STLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW  154 (265)
Q Consensus        75 ~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  154 (265)
                      +.+++..+..|.||||+|             +..|+.+++++|++ .+.+++.++..|.||||+|+. ++.+++++|+++
T Consensus         2 ~~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~   66 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATA-------------AARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH   66 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred             CCCccCCCCCCccHHHHH-------------HHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence            345666666667777666             45666666666666 355666666666677777666 666777777766


Q ss_pred             CCCCCCCCCC-CChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        155 GADTQKTTID-GWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       155 ~~~~~~~~~~-g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      |++++.++.. |.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++
T Consensus        67 g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-~~~~~Ll~~  133 (136)
T 1d9s_A           67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR-DIARYLHAA  133 (136)
T ss_dssp             TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH-HHHHHHHHH
T ss_pred             CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHc
Confidence            6666666666 66777777666667777776666666666666666777776666665 556666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=4e-28  Score=191.61  Aligned_cols=158  Identities=24%  Similarity=0.216  Sum_probs=116.8

Q ss_pred             CCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy17862         83 KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT  162 (265)
Q Consensus        83 ~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  162 (265)
                      ..|.||||.|             +..++.+.++.|++ .|.+++. +..|.||||+|+..|+.+++++|++.|++++..+
T Consensus         3 ~~g~t~L~~a-------------~~~~~~~~~~~ll~-~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d   67 (239)
T 1ycs_B            3 ITGQVSLPPG-------------KRTNLRKTGSERIA-HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN   67 (239)
T ss_dssp             -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC
T ss_pred             ccccccCchh-------------hhhhhHHHHHHHhc-cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            4689999999             77899999999998 5777765 4678999999999999999999999999999999


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCc-cHHHHH-
Q psy17862        163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNE-SAREIA-  240 (265)
Q Consensus       163 ~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~-t~l~~a-  240 (265)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+. +++++|+++ |++++..+..|. ||+|+| 
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV-QVCKFLVES-GAAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCSSSCCCHHHHCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHc-CCCcceecCCCCcchHHHHH
Confidence            9999999999999999999999999999999999999999999999998 789999988 899999998877 999999 


Q ss_pred             -hhcCCchhhhhcchhhh
Q psy17862        241 -TRSGIHYGLFETIEPCF  257 (265)
Q Consensus       241 -~~~~~~~~~~~ll~~~~  257 (265)
                       +..|+.+++..|+....
T Consensus       146 ~~~~g~~~~~~~Ll~~~a  163 (239)
T 1ycs_B          146 EMEEGYTQCSQFLYGVQE  163 (239)
T ss_dssp             SSSTTCCCHHHHHHHHHH
T ss_pred             HhhhccHHHHHHHHHhhh
Confidence             78898888888887643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=9e-28  Score=173.15  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=124.0

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCC-CCc
Q psy17862        122 STLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNG-GLT  200 (265)
Q Consensus       122 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t  200 (265)
                      +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46778899999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        201 PLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       201 pL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      |||+|+..|+. +++++|+++ |++++.+|..|.||||+|+..|+.+.++.|++.
T Consensus        81 ~L~~A~~~~~~-~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           81 PVHDAAREGFL-DTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHHHHHHHTCH-HHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCH-HHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999998 788999887 899999999999999999999988888888765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.2e-28  Score=184.66  Aligned_cols=147  Identities=17%  Similarity=0.094  Sum_probs=127.7

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHhcCC---
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVD-KDGYSPLHRACYNGHA----NIVELLIQWGADTQKTTIDGWTPLHSACKWNN---  177 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~---  177 (265)
                      ++.|+.+.++.++...   .+..+ ..|.||||+|+..++.    +++++|+++|++++.++..|.||||+|+..+.   
T Consensus        14 a~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~   90 (186)
T 3t8k_A           14 AMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI   90 (186)
T ss_dssp             HHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred             HHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence            8899999999998743   33444 6799999999999975    59999999999999999999999999999886   


Q ss_pred             ---HHHHHHHHhcCCCccccCCCCC-cHHHHHHhCCCh----HHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhh
Q psy17862        178 ---TECVIVLLNYGVDVNAQTNGGL-TPLHLAASHSHS----RDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGL  249 (265)
Q Consensus       178 ---~~~v~~Ll~~g~~~~~~~~~g~-tpL~~a~~~~~~----~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  249 (265)
                         .+++++|+++|++++.+|..|. ||||+|+..+..    ..++++|++..|++++.+|..|.||||+|++.|+...+
T Consensus        91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v  170 (186)
T 3t8k_A           91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL  170 (186)
T ss_dssp             HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred             hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence               6889999999999999999999 999999996543    25888898834999999999999999999999977766


Q ss_pred             hhcchh
Q psy17862        250 FETIEP  255 (265)
Q Consensus       250 ~~ll~~  255 (265)
                      +.|+..
T Consensus       171 ~~L~~~  176 (186)
T 3t8k_A          171 KMMEDY  176 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=6.1e-28  Score=178.16  Aligned_cols=142  Identities=16%  Similarity=0.185  Sum_probs=118.2

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      ...+.++||+|+..|+.++|++|++. |.+++..|..|.||||+|             + .++.+++++|++ .|.+++.
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-------------~-~~~~~~v~~Ll~-~g~~~~~   72 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVM-------------M-MGSARVAELLLL-HGAEPNC   72 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSS-------------C-TTCHHHHHHHHT-TTCCCCC
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-------------H-cCCHHHHHHHHH-cCCCCCC
Confidence            34578999999999999999999998 899999999999999998             3 689999999998 5889999


Q ss_pred             CCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy17862        128 VDKDGYS-PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       128 ~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a  205 (265)
                      ++..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||.+-+
T Consensus        73 ~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999 99999999999999999999999999999999999999999999999999999999999999999997744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=5.9e-28  Score=183.17  Aligned_cols=153  Identities=13%  Similarity=0.149  Sum_probs=134.1

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCC-CCCCcHHHHHHHcCcCchHHHHHHhhCCH----HHHHHHHhcCCCCc
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVD-KDGYSPLHRACYNDKNKRKILEAAEHNDS----KTLEALLDLDSTLV  125 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~tpl~~A~~~~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~  125 (265)
                      ..++|+.|++.|+.+.++.++.. +  ++..+ ..|+||||+|             +..++.    +++++|++ .|+++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~~~~g~T~Lh~A-------------~~~~~~~~~~~iv~~Ll~-~Gadv   68 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK-G--YEDKESVLKSNILYDV-------------LRNNNDEARYKISMFLIN-KGADI   68 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH-S--SSCHHHHHTTTHHHHH-------------TTCSCHHHHHHHHHHHHH-TTCCS
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc-C--cccccccCCCCHHHHH-------------HHcCCcchHHHHHHHHHH-CCCCC
Confidence            35789999999999999999987 3  34455 6799999999             445654    58999998 68999


Q ss_pred             ccCCCCCChHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC-hHHHHHHhcC-----CHHHHHHHHh-cCCCcc
Q psy17862        126 DAVDKDGYSPLHRACYNGH------ANIVELLIQWGADTQKTTIDGW-TPLHSACKWN-----NTECVIVLLN-YGVDVN  192 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~v~~Ll~-~g~~~~  192 (265)
                      +.++..|.||||+|+..++      .+++++|+++|++++.+|..|. ||||+|+..+     ..+++++|++ .|++++
T Consensus        69 n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~  148 (186)
T 3t8k_A           69 KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL  148 (186)
T ss_dssp             SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred             CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence            9999999999999999887      6889999999999999999999 9999999954     4569999999 999999


Q ss_pred             ccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        193 AQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       193 ~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      .+|..|+||||+|+..|+. .++++|...
T Consensus       149 ~~d~~G~TpL~~A~~~~~~-~~v~~L~~~  176 (186)
T 3t8k_A          149 IKDKWGLTALEFVKRCQKP-IALKMMEDY  176 (186)
T ss_dssp             CCCTTSCCHHHHHHTTTCH-HHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCH-HHHHHHHHH
Confidence            9999999999999999997 677887764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=6.7e-28  Score=182.65  Aligned_cols=141  Identities=28%  Similarity=0.352  Sum_probs=126.3

Q ss_pred             CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy17862         82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT  161 (265)
Q Consensus        82 d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  161 (265)
                      +..|.||||+|             +..|+.++++.|+.  +.+++..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus        41 ~~~g~t~L~~A-------------~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  105 (183)
T 3deo_A           41 VSEYETPWWTA-------------ARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR  105 (183)
T ss_dssp             HHHHHHHHHHH-------------HHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHH-------------HHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence            45788999999             77899999999998  7789999999999999999999999999999999999988


Q ss_pred             C-CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHH
Q psy17862        162 T-IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIA  240 (265)
Q Consensus       162 ~-~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a  240 (265)
                      + ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.                   ..+.+|+++|
T Consensus       106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a  166 (183)
T 3deo_A          106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFG  166 (183)
T ss_dssp             CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHH
T ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHH
Confidence            8 8899999999999999999999999999999999999999999875322                   3468999999


Q ss_pred             hhcCCchhhhhcchhh
Q psy17862        241 TRSGIHYGLFETIEPC  256 (265)
Q Consensus       241 ~~~~~~~~~~~ll~~~  256 (265)
                      ++.|+.+.+..|.+++
T Consensus       167 ~~~~~~~i~~~L~~~~  182 (183)
T 3deo_A          167 RRIGLEKVINVLEGQV  182 (183)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHcCHHHHHHHHHHhh
Confidence            9999777776665544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.3e-27  Score=185.95  Aligned_cols=161  Identities=20%  Similarity=0.254  Sum_probs=136.9

Q ss_pred             HHHhhccCCCccccC---CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcC
Q psy17862         67 LEALLDHDSTLVDAV---DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG  143 (265)
Q Consensus        67 v~~ll~~~~~~~~~~---d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  143 (265)
                      |+.|+++ +.+++..   +..|.||||+|             +..|+.++++.|++ .|.+++..+..|.||||+|+..|
T Consensus         1 v~~ll~~-~~~~~~~~~~~~~~~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g   65 (229)
T 2vge_A            1 MRSVLRK-AGSPRKARRARLNPLVLLLDA-------------ALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGA   65 (229)
T ss_dssp             ----------CCCCCCCTTSCHHHHHHHH-------------HHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTT
T ss_pred             Ceehhcc-CCCCccccccccchhHHHHHH-------------HHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcC
Confidence            4567776 5555443   45667789999             77899999999998 57789999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC-CCCCcHHHHH--HhCCChHHHHHHHhh
Q psy17862        144 HANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-NGGLTPLHLA--ASHSHSRDVLMILLS  220 (265)
Q Consensus       144 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~a--~~~~~~~~~~~~L~~  220 (265)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.++ ..|+||||+|  +..|+. +++++|++
T Consensus        66 ~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~-~~v~~Ll~  144 (229)
T 2vge_A           66 NYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA-DCATYLAD  144 (229)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH-HHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH-HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 6999999999  888877 78899988


Q ss_pred             CCCCCCcccCCCCccHHHHHhhcC
Q psy17862        221 HPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       221 ~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      . |++++..|..|.||++.++..+
T Consensus       145 ~-ga~~~~~~~~~~~~l~~~~~~~  167 (229)
T 2vge_A          145 V-EQSMGLMNSGAVYALWDYSAEF  167 (229)
T ss_dssp             H-HHHTTTSGGGEEEESSCBCCSS
T ss_pred             c-CCCcccccCCchHHHHHHhhcc
Confidence            7 8999999999999999665554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=5.1e-26  Score=163.92  Aligned_cols=124  Identities=32%  Similarity=0.332  Sum_probs=104.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      ...+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            44577888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      |+. +++++|+++ |++++..|..|.||||+|+..|+.+.+..|++
T Consensus        91 ~~~-~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           91 GHL-EIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             TCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCH-HHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            887 677888877 78888888888888888888887777776654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.9e-26  Score=166.38  Aligned_cols=128  Identities=27%  Similarity=0.353  Sum_probs=115.8

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy17862        123 TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL  202 (265)
Q Consensus       123 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  202 (265)
                      +++ .++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL   80 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence            344 5788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcc
Q psy17862        203 HLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETI  253 (265)
Q Consensus       203 ~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll  253 (265)
                      |+|+..|+. +++++|++. |++++.+|..|.||+++|+..+..+.+..+.
T Consensus        81 ~~A~~~~~~-~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           81 HDAAKNGHV-DIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHHHHcCCH-HHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            999999998 788888887 8999999999999999999888555444433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.7e-25  Score=157.56  Aligned_cols=123  Identities=43%  Similarity=0.657  Sum_probs=84.2

Q ss_pred             CCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy17862         84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI  163 (265)
Q Consensus        84 ~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  163 (265)
                      +|.||||+|             +..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.|++++..+.
T Consensus         1 ~g~t~L~~A-------------~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~   66 (126)
T 1n0r_A            1 NGRTPLHLA-------------ARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK   66 (126)
T ss_dssp             CCCCHHHHH-------------HHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCccHHHHH-------------HHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC
Confidence            356666666             556667777777763 556666666677777777777777777777777777776666


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        164 DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       164 ~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+. +++++|+++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~  123 (126)
T 1n0r_A           67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL-EVVKLLLEA  123 (126)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHH
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH-HHHHHHHHc
Confidence            777777777777777777777777777776677777777777777665 566666654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.2e-25  Score=161.90  Aligned_cols=113  Identities=35%  Similarity=0.466  Sum_probs=63.2

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+
T Consensus        22 ~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  100 (136)
T 2jab_A           22 ARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL  100 (136)
T ss_dssp             HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            44555555555555 24455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhh
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS  220 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~  220 (265)
                      ++|++++.+|..|.||||+|+..|+. +++++|++
T Consensus       101 ~~g~~~~~~~~~g~tpl~~A~~~~~~-~~~~~Ll~  134 (136)
T 2jab_A          101 KHGADVNAQDKFGKTAFDISIGNGNE-DLAEILQK  134 (136)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             HcCCCCcCcCCCCCCHHHHHHHCCCH-HHHHHHHH
Confidence            55555555555555555555555554 45555544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.9e-25  Score=156.69  Aligned_cols=125  Identities=36%  Similarity=0.527  Sum_probs=119.3

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      +.|+|+.|+..|+.+++++|++. +.+++..+..|.||||+|             +..++.+++++|+. .+.+++..+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A-------------~~~~~~~~~~~Ll~-~g~~~~~~~~   66 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLA-------------ARNGHLEVVKLLLE-AGADVNAKDK   66 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHH-------------HHcCcHHHHHHHHH-cCCCCcccCC
Confidence            67999999999999999999998 889999999999999999             67899999999999 5788899999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD  190 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~  190 (265)
                      .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=4.1e-26  Score=164.57  Aligned_cols=130  Identities=32%  Similarity=0.455  Sum_probs=115.4

Q ss_pred             CCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy17862         75 STLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW  154 (265)
Q Consensus        75 ~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  154 (265)
                      |+++ .+|..|.||||+|             +..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++
T Consensus         1 G~d~-~~~~~g~t~L~~A-------------~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   65 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIA-------------SIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH   65 (137)
T ss_dssp             ---C-CCCTTCCCHHHHH-------------HHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCC-CcCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3455 6788999999999             67899999999998 5788999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhh
Q psy17862        155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS  220 (265)
Q Consensus       155 ~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~  220 (265)
                      |++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..+.. +++.+|.+
T Consensus        66 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~-~~l~~l~~  130 (137)
T 3c5r_A           66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK-SLLLLPEK  130 (137)
T ss_dssp             TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHH-HHHSCC--
T ss_pred             CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHH-HHHhhccc
Confidence            999999999999999999999999999999999999999999999999999887554 55555544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=3e-25  Score=157.07  Aligned_cols=114  Identities=26%  Similarity=0.297  Sum_probs=104.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcC
Q psy17862        209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      |+. +++++|+++ |++++.+|..|.||+++|...+
T Consensus        84 ~~~-~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           84 GHV-SCVKLLLSK-GADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHCCCHH
T ss_pred             CCH-HHHHHHHHc-CCCCCCcCCCCCCHHHHhCCHH
Confidence            997 788888887 8999999999999999995443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.8e-25  Score=176.94  Aligned_cols=169  Identities=26%  Similarity=0.291  Sum_probs=141.6

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      +.++++.++..|+.+.+..+... +.+   .+..|.||||+|             +..|+.++++.|+.  +.+++..+.
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~-~~~---~~~~g~t~L~~A-------------~~~g~~~~v~~Ll~--~~~~~~~d~   75 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYI-AAD---VVSEYETPWWTA-------------ARKADEQALSQLLE--DRDVDAVDE   75 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGS-CHH---HHHHHHHHHHHH-------------HTTTCHHHHHHTTT--TCCTTCBCT
T ss_pred             CccHHHHHHHcCCCccccccccc-ccc---cccCCCCHHHHH-------------HHcCCHHHHHHHHc--CCCCCCcCC
Confidence            34556666666666555444333 222   235689999999             77899999999998  778999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHS  209 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~  209 (265)
                      .|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        76 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  155 (244)
T 3ui2_A           76 NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL  155 (244)
T ss_dssp             TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH
Confidence            99999999999999999999999999999888 78999999999999999999999999999999999999999998632


Q ss_pred             ChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        210 HSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       210 ~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      .                   ...+.|||++|+..|+.+.+..|+...+
T Consensus       156 ~-------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          156 K-------------------TTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             T-------------------TCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             h-------------------ccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            2                   2467999999999998888877776543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=5e-25  Score=179.43  Aligned_cols=142  Identities=20%  Similarity=0.159  Sum_probs=109.6

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCcccc------CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDA------VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~------~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      .++|+.|+..|+.+.|+.|+.. +.+++.      .+..|.||||+|+..+.          .++.+++++|+.. |.++
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------~~~~~iv~~Ll~~-gadv  219 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVAN----------QASLPLVDFIIQN-GGHL  219 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCC----------TTTHHHHHHHHHH-SSCT
T ss_pred             HHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcc----------cCcHHHHHHHHhc-CCCC
Confidence            4679999999999999999977 788887      57889999999954321          3778888888874 6778


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a  205 (265)
                      +..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++      .|.||||+|
T Consensus       220 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A  293 (301)
T 2b0o_E          220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVD  293 (301)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence            88888888888888888888888888888888888888888888888888888888888887765      467888888


Q ss_pred             HhCCCh
Q psy17862        206 ASHSHS  211 (265)
Q Consensus       206 ~~~~~~  211 (265)
                      +.+|+.
T Consensus       294 ~~~g~~  299 (301)
T 2b0o_E          294 YSWVIS  299 (301)
T ss_dssp             ------
T ss_pred             HhcCCc
Confidence            887753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=176.82  Aligned_cols=138  Identities=20%  Similarity=0.222  Sum_probs=118.8

Q ss_pred             hHHHHHHhhCCHHHHHHHHhcCCCCccc------CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCChHHH
Q psy17862        100 RKILEAAEHNDSKTLEALLDLDSTLVDA------VDKDGYSPLHRACYN---GHANIVELLIQWGADTQKTTIDGWTPLH  170 (265)
Q Consensus       100 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  170 (265)
                      .+++.|+..++.+.++.|+. .+.+++.      .+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            56888899999999999997 5777776      688999999999997   8999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCc
Q psy17862        171 SACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIH  246 (265)
Q Consensus       171 ~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~  246 (265)
                      +|+..++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|++. +++      .|.||||+|+..|+.
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~-~iv~~Ll~~-ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK-ECEELLEQA-QAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCH-HHHHHHHHH-HHH------TTSSCCC--------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHh-cCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999999999999999999999998 788888876 443      689999999999854

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=3.3e-24  Score=162.24  Aligned_cols=139  Identities=26%  Similarity=0.318  Sum_probs=125.2

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..+.||||+|+..|+.++++.|++  +.+++..|..|.||||+|             +..|+.+++++|++ .|.+++..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A-------------~~~~~~~~v~~Ll~-~ga~~~~~  105 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFV-------------AGLGSDKCVRLLAE-AGADLDHR  105 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCcC
Confidence            466799999999999999999998  789999999999999999             67899999999999 57888888


Q ss_pred             C-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        129 D-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       129 ~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      + ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.                 ..+.+||++|+.
T Consensus       106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~  168 (183)
T 3deo_A          106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRR  168 (183)
T ss_dssp             CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHH
T ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHH
Confidence            7 8899999999999999999999999999999999999999999763322                 456899999999


Q ss_pred             CCChHHHHHHHhhC
Q psy17862        208 HSHSRDVLMILLSH  221 (265)
Q Consensus       208 ~~~~~~~~~~L~~~  221 (265)
                      .|+. +++++|.++
T Consensus       169 ~~~~-~i~~~L~~~  181 (183)
T 3deo_A          169 IGLE-KVINVLEGQ  181 (183)
T ss_dssp             HHHH-HHHHHHHTC
T ss_pred             cCHH-HHHHHHHHh
Confidence            9876 899998765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=7.9e-27  Score=195.08  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=108.3

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCc--cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC---c
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTL--VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL---V  125 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---~  125 (265)
                      ..||||+|+..|+.++|++|++.+..+  .+..+..|.||||+|             +..|+.+++++|++. |.+   .
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A-------------a~~G~~eiv~~Ll~~-gad~~~~  157 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA-------------AENGHLHVLNRLCEL-APTEIMA  157 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH-------------HHTTCHHHHHHHHHS-CTTTHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH-------------HHcCCHHHHHHHHhC-CCCcccc
Confidence            359999999999999999999983311  223455678999999             667888888888874 422   1


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCChHHHHHH-hcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK--TTIDGWTPLHSAC-KWNNTECVIVLLNYGVDVNAQTNGGLTPL  202 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  202 (265)
                      +..+.. .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|++       |.|||
T Consensus       158 ~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL  229 (376)
T 2aja_A          158 MIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAE  229 (376)
T ss_dssp             HHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHH
T ss_pred             ccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHH
Confidence            222222 7888888888888888888888887766  6777888888888 88888888888876632       67888


Q ss_pred             HHHHhCCChHHHHHHHhh
Q psy17862        203 HLAASHSHSRDVLMILLS  220 (265)
Q Consensus       203 ~~a~~~~~~~~~~~~L~~  220 (265)
                      ++|+..|+. +++++|++
T Consensus       230 ~~Aa~~g~~-evv~lL~~  246 (376)
T 2aja_A          230 IHEFEYGEK-YVNPFIAR  246 (376)
T ss_dssp             HCTTTTTTT-THHHHHHH
T ss_pred             HHHHHCCCH-HHHHHHHh
Confidence            888888776 46666654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=4.3e-25  Score=172.18  Aligned_cols=137  Identities=23%  Similarity=0.296  Sum_probs=106.0

Q ss_pred             CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCC
Q psy17862         81 VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW-GADTQ  159 (265)
Q Consensus        81 ~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  159 (265)
                      .+..|.||||+|             +..|+.++++.|+. .+.+++..+..|.||||+|+..|+.+++++|++. |++++
T Consensus        69 ~~~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~  134 (222)
T 3ehr_A           69 QAESIDNPLHEA-------------AKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN  134 (222)
T ss_dssp             HEEEESCHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred             cccccccccccc-------------cccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence            345677888888             67888999999998 5778888888999999999999999999999998 89999


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCC
Q psy17862        160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSN  233 (265)
Q Consensus       160 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g  233 (265)
                      ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++. ++++.|+.. +++....+.+|
T Consensus       135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-~~l~~l~~~-~~~~~~~~~~~  206 (222)
T 3ehr_A          135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA-SLLKKKQGT-DAVRTLSNAED  206 (222)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHH-HHHC-----------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHH-HHHHHHhcc-chhhhccchhh
Confidence            9999999999999999999999999999999999999999999999888766 677777766 66666666544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=1.2e-24  Score=169.65  Aligned_cols=136  Identities=22%  Similarity=0.227  Sum_probs=113.9

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      .+.|+||+|+..|+.++|++|++. +.+++.+|..|.||||+|             +..|+.+++++|+...+.+++..+
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-------------~~~~~~~~v~~Ll~~~g~~~~~~d  137 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWA-------------CHGGHKDIVEMLFTQPNIELNQQN  137 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHTTSTTCCCCCCC
T ss_pred             ccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHH-------------HHcCCHHHHHHHHcCCCCCccccC
Confidence            457999999999999999999997 889999999999999999             678999999999996689999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCC
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL  199 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~  199 (265)
                      ..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..+..++++.|+..|+.....+..++
T Consensus       138 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999999999999999999999999999999999999999999999999998877766543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.4e-23  Score=148.47  Aligned_cols=112  Identities=26%  Similarity=0.326  Sum_probs=103.6

Q ss_pred             CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy17862         82 DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT  161 (265)
Q Consensus        82 d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  161 (265)
                      +..|.||||+|             +..|+.++++.|++ .+.+++..+..|.||||+|+..++.+++++|+++|++++.+
T Consensus         4 ~~~~~~~l~~A-------------~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   69 (123)
T 3aaa_C            4 GSMCDKEFMWA-------------LKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP   69 (123)
T ss_dssp             ---CHHHHHHH-------------HHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred             ccccchHHHHH-------------HHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence            45678899999             77899999999999 57788999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       162 ~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|..
T Consensus        70 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999999999999999999999999999999999943

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=6.3e-24  Score=168.03  Aligned_cols=139  Identities=26%  Similarity=0.319  Sum_probs=125.1

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..+.||||+|+..|+.++|+.|+.  +.+++.+|..|.||||+|             +..|+.+++++|+. .|.+++..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~ga~~~~~  106 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFV-------------AGLGSDKCVRLLAE-AGADLDHR  106 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHH-------------HHCCCHHHHHHHHH-cCCCCCcC
Confidence            457899999999999999999998  789999999999999999             67899999999999 58888888


Q ss_pred             C-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        129 D-KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       129 ~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      + ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+                 ....+.|||++|+.
T Consensus       107 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~  169 (244)
T 3ui2_A          107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRR  169 (244)
T ss_dssp             CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHH
Confidence            7 78999999999999999999999999999999999999999997522                 13568999999999


Q ss_pred             CCChHHHHHHHhhC
Q psy17862        208 HSHSRDVLMILLSH  221 (265)
Q Consensus       208 ~~~~~~~~~~L~~~  221 (265)
                      .|+. +++++|...
T Consensus       170 ~g~~-~iv~~L~~~  182 (244)
T 3ui2_A          170 IGLE-KVINVLEGQ  182 (244)
T ss_dssp             HHHH-HHHHHHHHH
T ss_pred             cChH-HHHHHHHHh
Confidence            9887 688888764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=3e-25  Score=185.51  Aligned_cols=173  Identities=16%  Similarity=0.097  Sum_probs=138.8

Q ss_pred             ccHHHHHh-cCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCC--cccCC
Q psy17862         53 RNILEAAE-HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL--VDAVD  129 (265)
Q Consensus        53 ~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~  129 (265)
                      +.+++|.. .++.+.+++++.. +.       ++.||||+|             +..|+.+++++|++.+...  .+..+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~-g~-------~~~T~Lh~A-------------a~~G~~e~v~~Ll~~ga~~~~~~~~~  125 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKK-GI-------KSEVICFVA-------------AITGCSSALDTLCLLLTSDEIVKVIQ  125 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHH-TC-------CHHHHHHHH-------------HHHCCHHHHHHHTTC--CCSSCC--C
T ss_pred             HHHHHHHhcCCCHHHHHHHHHc-CC-------CcCCHHHHH-------------HHcCCHHHHHHHHHcCCcHHHHHHhc
Confidence            34555655 4778888888876 33       346999999             7799999999999854311  12345


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccc--cCCCCCcHHHH
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADT---QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA--QTNGGLTPLHL  204 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~--~~~~g~tpL~~  204 (265)
                      ..|.||||+|+..|+.+++++|+++|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .|..|.||||+
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~  204 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW  204 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHH
Confidence            56889999999999999999999999752   222223 8999999999999999999999999887  88889999999


Q ss_pred             HH-hCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        205 AA-SHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       205 a~-~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      |+ ..|+. +++++|+++ |.       .|.|||++|+..|+.+.+..|++..
T Consensus       205 Aa~~~G~~-eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~evv~lL~~~g  248 (376)
T 2aja_A          205 AAVGRGHH-NVINFLLDC-PV-------MLAYAEIHEFEYGEKYVNPFIARHV  248 (376)
T ss_dssp             HHSTTCCH-HHHHHHTTS-HH-------HHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             HHHHCCCH-HHHHHHHhC-CC-------ccchHHHHHHHCCCHHHHHHHHhcC
Confidence            99 99998 799999886 42       3899999999999988777777653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=5.2e-22  Score=159.89  Aligned_cols=121  Identities=21%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCChHHHHHHhc---CCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy17862        134 SPLHRACYNGHANIVELLIQWGADT------QKTTIDGWTPLHSACKW---NNTECVIVLLNYGVDVNAQTNGGLTPLHL  204 (265)
Q Consensus       134 t~l~~a~~~~~~~~~~~Ll~~~~~~------~~~~~~g~t~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  204 (265)
                      ++|+.|+..++.+.++.+++.|+++      +..+..|.||||+|+..   ++.+++++|+++|++++.+|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            4566666666666666666666552      23355566666666666   56666666666666666666666666666


Q ss_pred             HHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        205 AASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       205 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      |+..|+. +++++|+++ |++++.+|..|.||||+|+..|+.+.+..|++..
T Consensus       212 A~~~g~~-~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          212 CCLTDNA-ECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCH-HHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6666655 455555554 5666666666666666666666555555555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=2.2e-22  Score=167.66  Aligned_cols=137  Identities=23%  Similarity=0.323  Sum_probs=106.8

Q ss_pred             Hhh-CCHHHHHHHHhcCCCCcccCC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q psy17862        106 AEH-NDSKTLEALLDLDSTLVDAVD--KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI  182 (265)
Q Consensus       106 ~~~-~~~~~~~~ll~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~  182 (265)
                      +.. ++.++++.|+. .|.+++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.++++
T Consensus       207 a~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~  285 (368)
T 3jue_A          207 SGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC  285 (368)
T ss_dssp             TSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            778 99999999998 678888887  88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCC--CCCCcccCCCCccHHHHHhhcC
Q psy17862        183 VLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHP--NVDPHILSTSNESAREIATRSG  244 (265)
Q Consensus       183 ~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~--~~~~~~~~~~g~t~l~~a~~~~  244 (265)
                      +|+++|++++.+|..|.||||+|+..|+. +++++|+...  +.+....+..+.|+++++....
T Consensus       286 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~-~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          286 LFLKRGADLGARDSEGRDPLTIAMETANA-DIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHHC-----------------------
T ss_pred             HHHHCcCCCCCcCCCCCCHHHHHHHCCCH-HHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999998 6777777542  2334456678889999886654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=6.2e-22  Score=132.84  Aligned_cols=92  Identities=45%  Similarity=0.689  Sum_probs=83.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH  210 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~  210 (265)
                      +|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHhhCCCC
Q psy17862        211 SRDVLMILLSHPNV  224 (265)
Q Consensus       211 ~~~~~~~L~~~~~~  224 (265)
                      . +++++|++. |+
T Consensus        81 ~-~~~~~Ll~~-ga   92 (93)
T 1n0q_A           81 L-EVVKLLLEA-GA   92 (93)
T ss_dssp             H-HHHHHHHHT-TC
T ss_pred             H-HHHHHHHHc-CC
Confidence            7 788888876 54

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=1.6e-22  Score=141.16  Aligned_cols=109  Identities=39%  Similarity=0.527  Sum_probs=101.5

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHhhCCCCCCcccCCCCccHH
Q psy17862        207 SHSHSRDVLMILLSHPNVDPHILSTSNESAR  237 (265)
Q Consensus       207 ~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l  237 (265)
                      ..++. +++++|+++ |++++.++..|.||-
T Consensus        84 ~~~~~-~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHH-EIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCH-HHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             HCCCH-HHHHHHHHc-CCCCCcCCccccccc
Confidence            99988 788999987 899999999999884

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=5.8e-22  Score=165.08  Aligned_cols=143  Identities=27%  Similarity=0.349  Sum_probs=115.7

Q ss_pred             cccHHHHHhc-CChHHHHHhhccCCCccccCC--CCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         52 KRNILEAAEH-NDSKTLEALLDHDSTLVDAVD--KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        52 ~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~d--~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      .++||.|+.. |+.++++.|++. |++++..+  ..|.||||+|             +..++.+++++|+. .|++++..
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~A-------------a~~g~~~iv~~LL~-~Gadvn~~  264 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQA-------------TAANSLLACEFLLQ-NGANVNQA  264 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCC
T ss_pred             CcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHH-------------HHCCCHHHHHHHHH-cCCCCCCC
Confidence            4689999999 999999999987 89999988  8899999999             66899999999999 58899999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC---CCccccCCCCCcHHHHH
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG---VDVNAQTNGGLTPLHLA  205 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g---~~~~~~~~~g~tpL~~a  205 (265)
                      |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+   .+....+..+.|+++++
T Consensus       265 d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999876   33344556678888877


Q ss_pred             HhCC
Q psy17862        206 ASHS  209 (265)
Q Consensus       206 ~~~~  209 (265)
                      ....
T Consensus       345 ~~~~  348 (368)
T 3jue_A          345 RDFS  348 (368)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            6653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=2.3e-21  Score=156.08  Aligned_cols=127  Identities=20%  Similarity=0.226  Sum_probs=99.8

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCc------cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTL------VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~------~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      .++|+.|+..|+.+.++.++.. |.+      ++..|..|.||||+|+..+.          .++.+++++|+. .|.++
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~----------~~~~~~v~~Ll~-~ga~i  198 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVD----------RTSLHIVDFLVQ-NSGNL  198 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------TTTHHHHHHHHH-HCSCT
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcc----------cchHHHHHHHHH-CCCCc
Confidence            3678899999999999999887 666      34447778888888843211          177888888887 47778


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCC
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD  190 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~  190 (265)
                      +..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus       199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888888888888888888888888888888888888888888888888888888887764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.1e-21  Score=129.38  Aligned_cols=93  Identities=40%  Similarity=0.603  Sum_probs=87.0

Q ss_pred             CCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy17862         84 DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTI  163 (265)
Q Consensus        84 ~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  163 (265)
                      +|+||||+|             +..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus         1 ~g~t~L~~A-------------~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~   66 (93)
T 1n0q_A            1 NGRTPLHLA-------------ARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK   66 (93)
T ss_dssp             --CCHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCcHHHHH-------------HHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            478999999             67899999999998 5889999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCC
Q psy17862        164 DGWTPLHSACKWNNTECVIVLLNYGVD  190 (265)
Q Consensus       164 ~g~t~l~~a~~~~~~~~v~~Ll~~g~~  190 (265)
                      .|.||||+|+..++.+++++|+++|++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 NGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=6.6e-22  Score=138.02  Aligned_cols=109  Identities=42%  Similarity=0.537  Sum_probs=101.1

Q ss_pred             cCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy17862         80 AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ  159 (265)
Q Consensus        80 ~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  159 (265)
                      .+|.+|.||||+|             +..++.+++++|+. .+.+++..+..|.||||+|+..++.+++++|+++|++++
T Consensus         4 ~~d~~g~t~L~~A-------------~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   69 (115)
T 2l6b_A            4 WGSKDGNTPLHNA-------------AKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN   69 (115)
T ss_dssp             CCSCSSCCHHHHH-------------HHHTCHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT
T ss_pred             ccCCCCCCHHHHH-------------HHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            5688999999999             67899999999998 578899999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy17862        160 KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPL  202 (265)
Q Consensus       160 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  202 (265)
                      .++..|.||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        70 ~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999999999999999999873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=3.1e-19  Score=123.42  Aligned_cols=93  Identities=31%  Similarity=0.384  Sum_probs=77.6

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy17862        125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHL  204 (265)
Q Consensus       125 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  204 (265)
                      ....+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            33456788899999999999999999999998888888889999999999999999999999999998888889999999


Q ss_pred             HHhCCChHHHHHHH
Q psy17862        205 AASHSHSRDVLMIL  218 (265)
Q Consensus       205 a~~~~~~~~~~~~L  218 (265)
                      |+..|+. +++++|
T Consensus        97 A~~~~~~-~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNE-DLAEIL  109 (110)
T ss_dssp             HHHHTCH-HHHHHH
T ss_pred             HHHcCCH-HHHHHh
Confidence            9988887 666665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=6e-18  Score=116.90  Aligned_cols=94  Identities=29%  Similarity=0.346  Sum_probs=83.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q psy17862         77 LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA  156 (265)
Q Consensus        77 ~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  156 (265)
                      .+...|.+|.||||+|             +..|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        16 ~~~~~~~~g~t~L~~A-------------~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga   81 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEA-------------ARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA   81 (110)
T ss_dssp             ------CCHHHHHHHH-------------HHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccCCccchHHHHH-------------HHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3456678899999999             77899999999998 578899999999999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHH
Q psy17862        157 DTQKTTIDGWTPLHSACKWNNTECVIVL  184 (265)
Q Consensus       157 ~~~~~~~~g~t~l~~a~~~~~~~~v~~L  184 (265)
                      +++.++..|.||||+|+..++.+++++|
T Consensus        82 ~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           82 DVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 2e-22
 Identities = 34/93 (36%), Positives = 48/93 (51%)

Query: 135 PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
           PLH A + GH  IV+ L+Q GA    + +   TPLH A +  +TE    LL     VNA+
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 195 TNGGLTPLHLAASHSHSRDVLMILLSHPNVDPH 227
                TPLH AA   H+  V ++L ++ N +  
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 95

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 5e-22
 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 21/218 (9%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN---------- 95
           N   KN    L  A H+++  +  LL        +   +GY+PLH A             
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 218

Query: 96  ---------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
                           L  A       + ALL       +  +K G +PLH     GH  
Sbjct: 219 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 278

Query: 147 IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
           + ++LI+ G     TT  G+TPLH A  + N + V  LL +  DVNA+T  G +PLH AA
Sbjct: 279 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 338

Query: 207 SHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
              H  D++ +LL +    P+ +S+   +   IA R G
Sbjct: 339 QQGH-TDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLG 374

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 4e-21
 Identities = 48/202 (23%), Positives = 72/202 (35%), Gaps = 21/202 (10%)

Query: 46  NPQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL- 103
           N  +      L  AA    ++  + LL + +  V+A  KD  +PLH A          L 
Sbjct: 27  NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLL 85

Query: 104 ------------------EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
                               A           L         + K G++PLH A   G  
Sbjct: 86  LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 145

Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
            + ELL++  A       +G TPLH A   NN + V +LL  G   ++    G TPLH+A
Sbjct: 146 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 205

Query: 206 ASHSHSRDVLMILLSHPNVDPH 227
           A  +       +L    + +  
Sbjct: 206 AKQNQVEVARSLLQYGGSANAE 227

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 8e-21
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 21/199 (10%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN---------- 95
           +    N    L  A   +   +   L       +A    G +PLH A             
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 251

Query: 96  ---------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHAN 146
                    +K+    L          +  +L     +VDA  + GY+PLH A + G+  
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 311

Query: 147 IVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
           +V+ L+Q  AD    T  G++PLH A +  +T+ V +LL  G   N  ++ G TPL +A 
Sbjct: 312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 371

Query: 207 SHSHSR--DVLMILLSHPN 223
              +    DVL ++    +
Sbjct: 372 RLGYISVTDVLKVVTDETS 390

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 3e-19
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A+       ++ LL   ++  +  +    +PLH A                  ++  + L
Sbjct: 7   ASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARA-------------GHTEVAKYL 52

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
           L   +  V+A  KD  +PLH A   GH N+V+LL++  A+    T  G TPLH A +  +
Sbjct: 53  LQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 111

Query: 178 TECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAR 237
            E V+ LL         T  G TPLH+AA +     V  +LL   +  P+    +  +  
Sbjct: 112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGK-VRVAELLLER-DAHPNAAGKNGLTPL 169

Query: 238 EIATRSG 244
            +A    
Sbjct: 170 HVAVHHN 176

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 21/200 (10%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACY----------- 94
           N + K+ +  L  A       +  LL  ++   +     G++PLH A             
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 95  ---------NDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
                      K    +  AA++   +  E LL+ D+   +A  K+G +PLH A ++ + 
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNL 178

Query: 146 NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLA 205
           +IV+LL+  G        +G+TPLH A K N  E    LL YG   NA++  G+TPLHLA
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

Query: 206 ASHSHSRDVLMILLSHPNVD 225
           A   H+  V ++L    N +
Sbjct: 239 AQEGHAEMVALLLSKQANGN 258

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 17/189 (8%)

Query: 34  WDDDVVGIEDSRNPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRA 92
               ++  E S+    K     L  AA++   +  E LL+ D+   +A  K+G +PLH A
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVA 172

Query: 93  CYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
                          HN+   ++ LL    +   +   +GY+PLH A       +   L+
Sbjct: 173 -------------VHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLL 218

Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR 212
           Q+G      ++ G TPLH A +  + E V +LL+   + N     GLTPLHL A   H  
Sbjct: 219 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH-V 277

Query: 213 DVLMILLSH 221
            V  +L+ H
Sbjct: 278 PVADVLIKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP 226
           TPLH A    +   V  LL  G   N       TPLH+AA   H+ +V   LL +     
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT-EVAKYLLQN-KAKV 59

Query: 227 HILSTSNESAREIATRSG 244
           +  +  +++    A R G
Sbjct: 60  NAKAKDDQTPLHCAARIG 77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
           +   +     L  A H  +  L   L      V+A  K GYSPLH             +A
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-------------QA 337

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID 164
           A+   +  +  LL   ++  + V  DG +PL  A   G+ ++ ++L     +T    + 
Sbjct: 338 AQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 395

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 2e-22
 Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 54  NILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN------------------ 95
            +   A     + L+  +  D +L    D+D  + LH AC                    
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 96  -DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
            D      L  A       +   L      V+AV+++G +PLH A       I  +L++ 
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GA+         T +H A    N + + +LL Y    N Q   G TPLHLA       + 
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER-VEE 184

Query: 215 LMILLSHPNVDPHILSTSNESAREIA 240
             +L+S      +I +   ++  ++A
Sbjct: 185 AKLLVSQ-GASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 1e-18
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 16/174 (9%)

Query: 46  NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
           N +D    + L  A       +   L      V+AV+++G +PLH A             
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK---------- 113

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG 165
              N  +    LL+  +   DA D    + +HRA   G+  ++ +L+ + A T     +G
Sbjct: 114 ---NRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 169

Query: 166 WTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
            TPLH AC     E   +L++ G  +  +     TPL +A        +L  ++
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG--LILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 22/128 (17%)

Query: 46  NPQDKNKRNILE-AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN--------- 95
           N  ++N    L  AA  N  +    LL+  +   DA D    + +HRA            
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 96  ----------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHA 145
                     D      L  A   +      LL      +   +K+  +PL  A   G  
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLG 214

Query: 146 NIVELLIQ 153
            I++ +++
Sbjct: 215 LILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 3e-20
 Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 72  DHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD 131
                  + + K G + L  A             AE    + L+ LLD     V+A D  
Sbjct: 135 RKTKEDQERLRKGGATALMDA-------------AEKGHVEVLKILLDEMGADVNACDNM 181

Query: 132 GYSPLHRACYNGHANIVE----LLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL-N 186
           G + L  A  +   + VE    LL+  GAD       G TPL  A +  +   V  LL  
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             +++N   + G T L LA      + +  +L   
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKL-KKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 4e-20
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 55  ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           +++AAE    + L+ LLD     V+A D  G + L  A  +  +          +     
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD---------SDVEAIT 202

Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QWGADTQKTTIDGWTPLHSAC 173
             LLD  +  V+   + G +PL  A    H  +V+ L+ Q   +   T  DG T L  A 
Sbjct: 203 HLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 174 KWNNTECVIVLLNYGVDVNAQ 194
           +    +   +L   G   +  
Sbjct: 262 ELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 4e-17
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 10/170 (5%)

Query: 80  AVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRA 139
             D  G++    A    K K          +               + + K G + L  A
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR----RKTKEDQERLRKGGATALMDA 155

Query: 140 CYNGHANIVELLI-QWGADTQKTTIDGWTPLHSACKWNNTECVIV----LLNYGVDVNAQ 194
              GH  ++++L+ + GAD       G   L  A   ++   V      LL++G DVN +
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 195 TNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSG 244
              G TPL LA    H   ++  LL   +++ +   +  ++A  +A    
Sbjct: 216 GERGKTPLILAVEKKHL-GLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-11
 Identities = 32/146 (21%), Positives = 65/146 (44%)

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
           +++A ++ D   ++ LL+  + +    ++ G++PLH A      +IVELL++ GAD    
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             +G TP   A    + + + + L+ G DVN     G T    AA +   + +  +    
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 222 PNVDPHILSTSNESAREIATRSGIHY 247
            NV+    +  ++        + +  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMD 154

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGAD-TQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
           +    L +A  N   ++V+ L++ GA+   +    GWTPLH+A + +  + V +LL +G 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 190 DVNAQTNGGLTPLHLAASHSH 210
           D   +   G TP  LAA    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGS 84

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 6e-09
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 163 IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN-GGLTPLHLAASHSHSRDVLMILLSH 221
           ++    L  A +  + + V  LL  G +VN Q   GG TPLH A   S    V ++L   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 222 PNVDPH 227
            +    
Sbjct: 63  ADPVLR 68

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.5 bits (202), Expect = 5e-19
 Identities = 27/84 (32%), Positives = 37/84 (44%)

Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
                K G + LH A   G+  +++LLIQ   D      DGWTPLH+A  W   E   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 185 LNYGVDVNAQTNGGLTPLHLAASH 208
           +    D+ A    G T   +A   
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.9 bits (159), Expect = 3e-13
 Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 49/238 (20%)

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAA--------- 106
           L A    D++ +  LL+  +  ++  + DG + LH+AC +D                   
Sbjct: 45  LAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 107 ----------EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVEL------ 150
                            +   L      V AV+ +G +PL  A       +++       
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 151 ---------------------LIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV 189
                                L     +  +    G T LH A     TE + +L+    
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHY 247
           DVN +   G TPLH AA      +   IL+ +   D   ++   ++A ++A    + Y
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGK-EEACRILVEN-LCDMEAVNKVGQTAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           V  D  +    AC +G    V  L++ GAD     +DG T LH AC  +N + 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.9 bits (120), Expect = 4e-08
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
            K   D      +AC   +TE V+ LL  G D+N     GLT LH A    +
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 7e-19
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 8/168 (4%)

Query: 46  NPQDKNKRNILEAAEHN----DSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRK 101
              D    + L  A  +    DS T EALLD+    +   D    + LH           
Sbjct: 134 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 193

Query: 102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQ---WGADT 158
              AA++     +  ++   +  + +   +  S  +        +I+E L          
Sbjct: 194 S-AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 252

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA 206
                +G T L+ A +  N   V  LL+YG D       GL P+   A
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (157), Expect = 6e-13
 Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 30/211 (14%)

Query: 47  PQDKNKRNIL-EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEA 105
           P D++    L       + + ++ L+ H S      D  G S L +A  +          
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVN-------- 152

Query: 106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW----------- 154
             + DS T EALLD     +   D    + LH               ++           
Sbjct: 153 --NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 210

Query: 155 --GADTQKTTIDGWTPLHSACKWNNTECVIVLLN---YGVDVNAQTNGGLTPLHLAASHS 209
                 Q  T +  +  +          +  L         +NAQ + G T L++AA   
Sbjct: 211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 270

Query: 210 HSRDVLMILLSHPNVDPHILSTSNESAREIA 240
           +   ++  LL +   DP I + S     +  
Sbjct: 271 N-ISIVDALLDY-GADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (157), Expect = 6e-13
 Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 14/207 (6%)

Query: 43  DSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKI 102
            S    D  ++  LEA           L      +  +++ D  +          + ++ 
Sbjct: 26  PSPVVNDNEQKMKLEAFLQR------LLFPEIQEMPTSLNNDSSNRNSEG---GSSNQQQ 76

Query: 103 LEAAEHNDSKTLEALLDLDSTLVDA-VDKDGYSPLHRACYNGHANIVELLIQWGADTQKT 161
              +  +  + +          ++  VD+ G +PLH      +  +V+ L++ G++    
Sbjct: 77  QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG 136

Query: 162 TIDGWTPLHSACKWNNTECVIVLLNY----GVDVNAQTNGGLTPLHLAASHSHSRDVLMI 217
              G + L  A K  N                 +  + +   T LH     S        
Sbjct: 137 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA 196

Query: 218 LLSHPNVDPHILSTSNESAREIATRSG 244
              + ++    +        +  T   
Sbjct: 197 AKYYLDILMGWIVKKQNRPIQSGTNEK 223

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.1 bits (199), Expect = 2e-18
 Identities = 33/247 (13%), Positives = 68/247 (27%), Gaps = 14/247 (5%)

Query: 13  KMQQLQESIRDGSFNIGQVSAWDDDV-----VGIEDSRNPQDKNKRNILEAAEHNDSKTL 67
            +  ++    D    +     W++                  K   +I      N  +  
Sbjct: 3   TIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVR 62

Query: 68  EALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDS--TLV 125
           + L  + +   +   K  +S  H+     K++     AA    S  L+ L  L +   +V
Sbjct: 63  QLLCLYYA-HYNRNAKQLWSDAHKK--GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV 119

Query: 126 DAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID--GWTPLHSACKWNNTECVIV 183
             +  + Y     A  NGH +++  L +         I    +     A +  +   +  
Sbjct: 120 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 179

Query: 184 LLNYGVDVNAQ--TNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT 241
           L                      AA      +V+  LL  P +  +      E   +   
Sbjct: 180 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 239

Query: 242 RSGIHYG 248
                + 
Sbjct: 240 PFIARHV 246

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 22/197 (11%)

Query: 43  DSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAV--DKDGYSPLHRACYNDK--- 97
                Q +N      AAE+     L  L +   T   A+   ++ Y+    A        
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 212

Query: 98  -----NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
                +   +L  AE ++ +  E  ++          K+ +     +  +G  ++V    
Sbjct: 213 INFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT--- 269

Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-----VDVNAQTNGGLTPLHLAAS 207
                           L         + +  LL+                    L LA  
Sbjct: 270 ---KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 208 HSHSRDVLMILLSHPNV 224
             + +    +LLS P+V
Sbjct: 327 LGN-QGACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.1 bits (134), Expect = 9e-10
 Identities = 41/247 (16%), Positives = 61/247 (24%), Gaps = 50/247 (20%)

Query: 46  NPQDKNKRNILE-AAEHNDS---KTLEALLDHDSTLVDAVDKDGYSPLHRACYN------ 95
           + +      I   AA    S    TL  LL  D  +V  +  + Y     A  N      
Sbjct: 84  HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVIQAENYQAFRLAAENGHLHVL 142

Query: 96  ----------------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV--DKDGYSPLH 137
                            +N      AAE+     L  L +L  T   A+   ++ Y+   
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 202

Query: 138 RACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA-------CKWNNTECVIVLLNYG-- 188
            A   GH N++  L+          I  +                   E           
Sbjct: 203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 262

Query: 189 -------VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDP----HILSTSNESAR 237
                       Q    L  L          D +  LLS P +        +        
Sbjct: 263 GVFDLVTKSECLQGFYMLRNLIRRNDEVL-LDDIRFLLSIPGIKALAPTATIPGDANELL 321

Query: 238 EIATRSG 244
            +A R G
Sbjct: 322 RLALRLG 328

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 3e-09
 Identities = 21/166 (12%), Positives = 37/166 (22%), Gaps = 17/166 (10%)

Query: 41  IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKR 100
              +    +        A        +  LLD    L  A +   +    +      N  
Sbjct: 187 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA-EIHEFEYGEKYV----NPF 241

Query: 101 KILEAAEHNDSKTL------EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQW 154
                    +          + + DL +             L R       + +  L+  
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 155 GADTQK-----TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
                         D    L  A +  N     +LL+    V A T
Sbjct: 302 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLALT 346

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.4 bits (181), Expect = 3e-16
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQ-WGADTQKTTIDGWTPLHSACKWNNTECVIV 183
            D+    G + LH A    +  IV+ L+   G++  K   DG TP+  A +    E V+ 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 184 LLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
           L+  G  V A      T   LA +++H  +++ I  
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNH-HNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.3 bits (160), Expect = 2e-13
 Identities = 16/59 (27%), Positives = 23/59 (38%)

Query: 129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY 187
           D+DG +P+  A   G   +V  LIQ GA  +       T    A   N+   V +    
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 134 SPLHRAC-YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY----- 187
           SP+       G   I E + +   +         T LH     ++ E    L+ +     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 188 ---GVDVNAQTNGGLTPLH 203
              G DVNA      TPL 
Sbjct: 61  IAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 10/133 (7%)

Query: 103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL--------IQW 154
           L           E +      ++D   +   + LH    N  A   E L        I  
Sbjct: 6   LHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 155 GADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDV 214
           GAD      D  TPL  A        V  L+  G D         + LH AA++     +
Sbjct: 64  GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMM 123

Query: 215 LMILLSHPNVDPH 227
           + +L S       
Sbjct: 124 VYMLNSTKLKGDI 136

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 7e-08
 Identities = 43/251 (17%), Positives = 87/251 (34%), Gaps = 45/251 (17%)

Query: 48  QDKNKRNIL-EAAEHNDSKTLEALLDHDSTL-------VDAVDKDGYSPLHRACYN---- 95
             ++ R +L   A ++ ++  E L+ H++         V+A+D D  +PL  A       
Sbjct: 29  DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

Query: 96  ------------------DKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLH 137
                             +++      A                   ++ +D++G + L 
Sbjct: 89  LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 148

Query: 138 RACYNGHA-----------NIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL-L 185
              +N                 ++     A        G T LH A + +N   V  L  
Sbjct: 149 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 208

Query: 186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGI 245
             G + + Q   G TP+ LAA      +V+M L+         +  ++ +AR++A  +  
Sbjct: 209 EKGSNKDKQDEDGKTPIMLAAQEGR-IEVVMYLIQQ-GASVEAVDATDHTARQLAQANN- 265

Query: 246 HYGLFETIEPC 256
           H+ + +  + C
Sbjct: 266 HHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 56  LEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE 115
           L           E +      ++D   +   + LH    N  +  K  +   H   + + 
Sbjct: 6   LHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNS-SAEKSEDLIVHEAKECIA 62

Query: 116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKW 175
           A  D     V+A+D D  +PL  A       +V  L++ GAD         + LH A   
Sbjct: 63  AGAD-----VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117

Query: 176 NNTECVIVLLNYG 188
            +   ++ +LN  
Sbjct: 118 RDFGMMVYMLNST 130

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 2e-14
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQ---KTTIDGWTPLHSACKWNNTEC 180
           +   V +DG + LH A  + H   ++ L+ + A  +        G T LH A        
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIA 240
           V  L   G  V     GG T LHLA          ++L   P+       T    +++  
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 241 TRSGIHYGLFE 251
             +       +
Sbjct: 121 PDTSHAPAAVD 131

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 1e-13
 Identities = 32/143 (22%), Positives = 45/143 (31%), Gaps = 15/143 (10%)

Query: 77  LVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL--DSTLVDAVDKDGYS 134
           +   V +DG + LH A  +                  L+ LL        +D  +  G +
Sbjct: 1   VFGYVTEDGDTALHLAVIH-------------QHEPFLDFLLGFSAGHEYLDLQNDLGQT 47

Query: 135 PLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ 194
            LH A   G A+ VE L   GA        G T LH AC+     C  VLL         
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 195 TNGGLTPLHLAASHSHSRDVLMI 217
            +          +   S     +
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAV 130

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 2e-13
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 3/165 (1%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           A           LL    +       D Y    + C  D +       ++ N     E  
Sbjct: 85  ACRVRAHTCACVLLQPRPS-HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK-TTIDGWTPLHSACKWN 176
            +     ++A + DG++PLH A  +  A +V LL   GAD  K     G TPLH A +  
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203

Query: 177 NTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
               + +LL  G D  A+  GG TPL  A    +   +  +L +H
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPN-PILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 5e-10
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 41  IEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKR 100
           ++   +         L  ++     T  A    DS      +++      R     +N  
Sbjct: 98  LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 101 KILEAAEHNDSKTLEALLDLDSTLVDAVD---KDGYSPLHRACYNGHANIVELLIQWGAD 157
                      K  E +  L     D        G +PLH A     A+++ELL++ GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 158 TQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
                  G TPL SA    N     +L  +G
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 90  HRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
                    +  +  A E   +  LE LL   +    A    G +PL  A    +  +  
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILAR 242

Query: 150 LLIQWGADTQK 160
           LL   GA   +
Sbjct: 243 LLRAHGAPEPE 253

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 2e-13
 Identities = 29/96 (30%), Positives = 43/96 (44%)

Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
           + LL+  + +     K G SPL  A  N   ++V+LL+Q GA+       G + LHSA  
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
                 V  L+  G D + +     TPL +A S   
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-10
 Identities = 25/89 (28%), Positives = 37/89 (41%)

Query: 93  CYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
             + K+ R  L  A  N+S ++  LL      V+A    G S LH A   G   +V  L+
Sbjct: 138 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 197

Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECV 181
           + GAD+        TPL  A      + +
Sbjct: 198 RSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-09
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 131 DGYSPLHRACYNGHANIVELLI----QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN 186
           DG +PLH A   G+   V  L+    Q G +         TPLH A        V +L+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 187 YGVDVNAQTNGGLTPLHLAASHSH 210
            G    A    G T  HLA  H  
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRS 85

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-09
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 164 DGWTPLHSACKWNNTECVIVLLNY----GVDVNAQTNGGLTPLHLAASHSHSRDVLMILL 219
           DG TPLH A    N   V  L+N     G +++   N   TPLHLA   +    V +++ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 220 SHPNVDPH 227
           +  +    
Sbjct: 62  AGASPMAL 69

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 29/215 (13%)

Query: 58  AAEHNDSKTLEALLDHDSTL---VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           A    +   +  L++        +D  +    +PLH A          L          L
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 115 E-----------------------ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELL 151
           +                             +  ++A + DG + LH A        V+LL
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 152 IQWGAD-TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH 210
           ++ GAD        G +PL  A + N+   V +LL +G +VNAQ   G + LH A+    
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 211 SRDVLMILLSHPNVDPHILSTSNESAREIATRSGI 245
              ++  L+     D  + +  N++   +A    +
Sbjct: 190 -LPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 16/108 (14%)

Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTL---VDAVDKDGYSPLHRAC 140
           DG +PLH A                 +   +  L++L       +D  +    +PLH A 
Sbjct: 2   DGDTPLHIAVVQ-------------GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

Query: 141 YNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG 188
                ++V LL+  GA        G T  H AC+  +  C+  LL+  
Sbjct: 49  ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 96

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.6 bits (158), Expect = 2e-13
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVL 184
           ++A D  G + LH A    +   V +L+   A+         TPL  A +  + E    L
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 185 LNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
           L+   +     +    P  +A+   H  D++ +L
Sbjct: 176 LDNFANREITDHMDRLPRDVASERLH-HDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 34/151 (22%)

Query: 111 SKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLH 170
           ++ +  LL   + L   +DK G + LH A     A+  + L+  GAD       G TPLH
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 171 SACKWNNTECVIV----------------------------------LLNYGVDVNAQTN 196
           +A   +      +                                  L+    D+NA  N
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 197 GGLTPLHLAASHSHSRDVLMILLSHPNVDPH 227
            G T LH AA+ +++  V ++L+ H N D  
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHANRDAQ 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 3e-13
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 19/146 (13%)

Query: 84  DGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALL----DLDSTL-VDAVDKDGYSPLHR 138
           D  + LH  C          EA +  D   L        DL   + +    +   + LH 
Sbjct: 2   DTAAKLHSLC----------EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHL 51

Query: 139 ACYN---GHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT 195
           A  +      +IV+ L+Q   +  K T  G T LH  C  +N EC+ +LL     +    
Sbjct: 52  AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 111

Query: 196 NGGLTPLHLAASHSHSRDVLMILLSH 221
             G TPL +A    H      +L   
Sbjct: 112 ESGETPLDIAKRLKHE-HCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 33/149 (22%)

Query: 55  ILEAAEHNDSKTLEALLDH-----DSTLVDAVDKDGYSPLHRACYN-DKNKRKILE---- 104
           + EA +  D   L           +   +    +   + LH A  + D+    I++    
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 105 -----------------AAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANI 147
                                 D+     LL      ++  ++ G +PL  A    H + 
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 148 VELLIQWGADTQKTTIDGWTPLHSACKWN 176
            ELL Q  +          + +H   +W 
Sbjct: 130 EELLTQALSGRFN------SHVHVEYEWR 152

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 3e-12
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 58  AAEHNDSKTLEALLDH---DSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           A  H +      ++     D   ++  +    +PLH A   ++ +          D +  
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 115 EAL-------------------------LDLDSTLVDAVDKDGYSPLHRACYNGHANIVE 149
           +                                +++ A + +G++ LH A  +G+  IVE
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 150 LLIQWGADT-QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH 208
           LL+  GAD   +   +G T LH A    N + V +LL  G DVN  T  G +P  L    
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188

Query: 209 SHSRDVLMILLSH 221
                +   L   
Sbjct: 189 PS-TRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVD 190
           +G + LH A    + ++V LL++ GAD  + T  G++P        +T     L    ++
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 131 DGYSPLHRACYNGHAN----IVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           DG S LH A  +        ++  +    A          TPLH A   N  E 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 54

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 6e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 164 DGWTPLHSACKWNNTECVIVLLNY----GVDVNAQTNGGLTPLHLAASHSH 210
           DG + LH A         + ++         +N Q N   TPLHLA   + 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 9e-05
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 126 DAVDKDGYSPLHRACYNGHANIVELLIQWGAD 157
           + V   GYSP           I + L Q   +
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 6e-12
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 26/214 (12%)

Query: 57  EAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYND-------------------- 96
           +A   N+   ++ LL    +L+   D+DG  PLH +                        
Sbjct: 6   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 97  ----KNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLI 152
                     +  +  N               ++ +   G + LH A       + + LI
Sbjct: 66  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125

Query: 153 QWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG-VDVNAQTNGGLTPLHLAASHSHS 211
           + GA  +        PLH A    + + + +L   G   VN Q   G TPL  A +  H 
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 212 RDVLMILLSHPNVDPHILSTSNESAREIATRSGI 245
            D  ++L+     +  ++      A ++A    +
Sbjct: 186 -DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 218

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 4e-08
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 167 TPLHSACKWNNTECVIVLLN-YGVDVNAQTNGGLTPLHLAASHSH 210
            PLH AC  N    V  LL+     +  +   G  PLH + S   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 17/131 (12%)

Query: 61  HNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDL 120
                 +   L  +   V   DK    PLHRA      K   L       +         
Sbjct: 114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--------- 164

Query: 121 DSTLVDAVDKDGYSPLHRACYNGHANIVELLI-QWGADTQKTTIDGWTPLHSACKWNNTE 179
               V+  DK G++PL  A   GH +   LL+ ++GA+       G      A    N +
Sbjct: 165 ----VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQ 217

Query: 180 CVIVLLNYGVD 190
                LN  VD
Sbjct: 218 VKKFFLNNVVD 228

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 8e-11
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 55  ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           +  AA   D + +  LL  +    DA+++ G + L    +        L     + +   
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 64

Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACK 174
                         D  G SP+H A   G  + +++L++ GAD       G  P+H A +
Sbjct: 65  --------------DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110

Query: 175 WNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
             +T  V  L     D++ +   GLTPL LA      +D++ IL  H
Sbjct: 111 EGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGA-QDLVDILQGH 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (114), Expect = 6e-08
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 53  RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSK 112
           + +LEAA       +  L+ + +      D  G SPLH A          +         
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 113 TLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSA 172
                            K   +PLH A   GHANIVE+L++ GAD     +   T LH A
Sbjct: 62  A--------------RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107

Query: 173 CKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
            + N+ E V +L+ YG DV+ Q+    T   ++  + +  D+  IL
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN-EDLAEIL 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 22/123 (17%), Positives = 30/123 (24%), Gaps = 35/123 (28%)

Query: 134 SPLHRACYNGHANIVELLIQWGAD---------------------------------TQK 160
           + L  +   G  ++V+ +I    D                                    
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 161 TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTN-GGLTPLHLA-ASHSHSRDVLMIL 218
              DGWTPLH A   NN +    L+  G  V A T     T                  L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 219 LSH 221
              
Sbjct: 123 YGV 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 18/140 (12%)

Query: 55  ILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTL 114
           +L+++   +   ++ ++          D+   +  +  C       K L     N +   
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA- 63

Query: 115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGAD-TQKTTIDGWTP--LHS 171
                         D DG++PLH A    +  + + L++ GA     T  D  T      
Sbjct: 64  --------------DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 109

Query: 172 ACKWNNTECVIVLLNYGVDV 191
             +   T+C   L      +
Sbjct: 110 EMEEGYTQCSQFLYGVQEKM 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 58  AAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL 117
           AA   D + L +LL ++   V+A +  G + L      +    + L     N        
Sbjct: 8   AAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK---- 62

Query: 118 LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNN 177
                      D+ G++ +H A   G  + ++ L+++ AD      +G  PLH A K  +
Sbjct: 63  -----------DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 111

Query: 178 T-ECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH 221
                 ++ +   +V  + + G T   LA  +  + +V+ ++ ++
Sbjct: 112 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 125 VDAVDKDGYSPLHRACYNGHANIVELLIQWG 155
           V   +  G +    A   G   +V L+   G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-05
 Identities = 9/47 (19%), Positives = 13/47 (27%)

Query: 134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC 180
           + L  A   G    +  L+Q   +       G T L      N    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA 49

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 9e-04
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 167 TPLHSACKWNNTECVIVLLNYGVDVNAQTNGG 198
             L SA    + E +  LL   V+VNAQ   G
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 6e-05
 Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 34/122 (27%)

Query: 132 GYSPLHRACYNGHANIVELLIQWGADT--------------------------------- 158
               L  A   G    V  L++ GA+                                  
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 159 QKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL 218
                    P+H A +    + ++VL   G  ++ +   G  P+ LA    H RDV   L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH-RDVARYL 121

Query: 219 LS 220
            +
Sbjct: 122 RA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=239.10  Aligned_cols=199  Identities=25%  Similarity=0.346  Sum_probs=179.6

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHhhCCH
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAEHNDS  111 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~~~~~  111 (265)
                      .+.++.+|..|+.+.|+.++...+..++.+|..|+||||+|+..|+                    ...+++.++..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            3567778999999999888888788888899999999999988765                    23677888999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCc
Q psy17862        112 KTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDV  191 (265)
Q Consensus       112 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~  191 (265)
                      ++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+..+++++|...|.++
T Consensus        84 ~i~~~Ll~-~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          84 EIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             chhHHHhc-cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            99999998 56889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        192 NAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       192 ~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      +.+|..|+||||+|+..|+. +++++|++. |+|++.+|..|+||||+|. .|+...++.||+
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~-~~v~~LL~~-Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERV-EEAKLLVSQ-GASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             eeccCCCCceeccccccCcH-HHHHHHHHC-CCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            99999999999999999998 788888887 8999999999999999984 677777766654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-35  Score=232.95  Aligned_cols=195  Identities=26%  Similarity=0.259  Sum_probs=172.4

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCc---cccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCC
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTL---VDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDST  123 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  123 (265)
                      .++.|.||||+||..|+.+++++|++. +++   ++.+|..|.||||+|             +..|+.++++.|++ .|+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A-------------~~~g~~~iv~~Ll~-~ga   69 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLA-------------AILGEASTVEKLYA-AGA   69 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHH-------------HHHTCHHHHHHHHH-TTC
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchH-------------Hhhccccccccccc-ccc
Confidence            346789999999999999999999987 544   778889999999999             67899999999998 588


Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHHcCC-----------------------------------------------
Q psy17862        124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGA-----------------------------------------------  156 (265)
Q Consensus       124 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-----------------------------------------------  156 (265)
                      +++..|..|.||||+|+..++.+++++|++.+.                                               
T Consensus        70 ~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T d1oy3d_          70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (255)
T ss_dssp             CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             cccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCc
Confidence            999999999999999999999999999876432                                               


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCcccc-CCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCcc
Q psy17862        157 DTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQ-TNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNES  235 (265)
Q Consensus       157 ~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t  235 (265)
                      .++.++..|.||||+|+..++.+++++|++.+++.+.. +..|.||||+|+..|+. +++++|+++ |++++.+|..|+|
T Consensus       150 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~-~~v~~Ll~~-gadin~~d~~g~t  227 (255)
T d1oy3d_         150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA-SVLELLLKA-GADPTARMYGGRT  227 (255)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             ccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHH-HHHHHHHHC-CCCCCCCCCCCCC
Confidence            12346677999999999999999999999999888864 56799999999999998 788899987 8999999999999


Q ss_pred             HHHHHhhcCCchhhhhcchhhhh
Q psy17862        236 AREIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       236 ~l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      |||+|++.|+.+.++.|++.-.+
T Consensus       228 ~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         228 PLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999888876543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.9e-33  Score=225.18  Aligned_cols=176  Identities=27%  Similarity=0.433  Sum_probs=143.7

Q ss_pred             CCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         50 KNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      .++++|++||..|+.+.|++||++ |+++|..|.+|.||||+|+.             .|+.+++++|++ .+.+....+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~-------------~g~~eiv~~Ll~-~~~~~~~~~  103 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACI-------------DDNVDMVKFLVE-NGANINQPD  103 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHH-------------TTCHHHHHHHHH-TTCCTTCCC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHh-------------cCCceeeeeecc-ccccccccc
Confidence            457899999999999999999998 89999999999999999954             555666666665 344444555


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCC--------------------------------------------------
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQ--------------------------------------------------  159 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--------------------------------------------------  159 (265)
                      ..+.+||+.++..++.++++.|+++|+..+                                                  
T Consensus       104 ~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  183 (291)
T d1s70b_         104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ  183 (291)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchh
Confidence            555666666666666666666655544332                                                  


Q ss_pred             ----------CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCccc
Q psy17862        160 ----------KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHIL  229 (265)
Q Consensus       160 ----------~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~  229 (265)
                                ..+..|.||||.|+..++.+++++|++.|++++.++..|+||||+|+..|+. +++++|+++ |+|++.+
T Consensus       184 ~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~-~iv~lLl~~-Gadv~~~  261 (291)
T d1s70b_         184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE-EACRILVEN-LCDMEAV  261 (291)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCC
T ss_pred             hhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCc
Confidence                      3345588999999999999999999999999999999999999999999998 788999987 8999999


Q ss_pred             CCCCccHHHHHhh
Q psy17862        230 STSNESAREIATR  242 (265)
Q Consensus       230 ~~~g~t~l~~a~~  242 (265)
                      |..|+||||+|++
T Consensus       262 d~~G~TaL~~A~e  274 (291)
T d1s70b_         262 NKVGQTAFDVADE  274 (291)
T ss_dssp             CTTSCCTTTSCCS
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999975

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-32  Score=213.02  Aligned_cols=198  Identities=21%  Similarity=0.247  Sum_probs=144.8

Q ss_pred             ccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc-----------------------CchHHHHHHhhC
Q psy17862         53 RNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK-----------------------NKRKILEAAEHN  109 (265)
Q Consensus        53 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~-----------------------~~~~l~~a~~~~  109 (265)
                      +|||+||..|+.+.|+.|+...+.+++.+|.+|+||||+|+..++                       ...+++.++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            455555555555555555554444555555555555555544332                       112344447778


Q ss_pred             CHHHHHHHHhcCC-CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q psy17862        110 DSKTLEALLDLDS-TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG  188 (265)
Q Consensus       110 ~~~~~~~ll~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g  188 (265)
                      ..++++.++.... ......+..+.++++.++..++.++++.|+..|...+..+..|.||||+|+..++.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            8888887776422 223445667888999999999999999999999998888999999999999999999999999987


Q ss_pred             -CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        189 -VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       189 -~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                       .+++.+|..|+||||+|+..|+. +++++|++..|++++++|..|+||||+|+..   ..+..||+
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~-~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~~~~~Ll~  224 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHG-DAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  224 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCH-HHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHHHH
T ss_pred             cccccccccccCCchhhhcccccH-HHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHHHH
Confidence             67888999999999999999987 6777777655899999999999999998743   34454444

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-33  Score=215.43  Aligned_cols=197  Identities=26%  Similarity=0.264  Sum_probs=171.2

Q ss_pred             CcccHHHHHhcCChHHHHHhhc---cCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         51 NKRNILEAAEHNDSKTLEALLD---HDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      |.||||+|+..|+.+.+..+++   ..+.++|.+|.+|+||||+|             +..++.+++++|++ .|++++.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A-------------~~~~~~~iv~~L~~-~g~d~~~   67 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA-------------VITNQPEIAEALLG-AGCDPEL   67 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH-------------HHTTCHHHHHCCCS-CCCCSCC
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccc-------------cccccccccccccc-ccccccc
Confidence            6799999999999877666554   23788999999999999999             66889999999988 5788999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC-CCCCc
Q psy17862        128 VDKDGYSPLHRACYNGHANIVELLIQWGADTQ------KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-NGGLT  200 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t  200 (265)
                      .+..|.|||++++..+..++++.|++.+....      .....|.||+|.|+..+..+++++|+..|+.++..+ .+|.|
T Consensus        68 ~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T  147 (221)
T d1iknd_          68 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT  147 (221)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCC
Confidence            99999999999999999999999999875533      345568999999999999999999999999888765 56999


Q ss_pred             HHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhhccCCC
Q psy17862        201 PLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFNNLSMG  263 (265)
Q Consensus       201 pL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~  263 (265)
                      |||+|+..|+. +++++|+++ |+|++.+|.+|+||||+|+..++.+.+..|++.....+.+-
T Consensus       148 ~L~~A~~~g~~-~~v~~Ll~~-gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~  208 (221)
T d1iknd_         148 ALHLAVDLQNP-DLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML  208 (221)
T ss_dssp             HHHHHHHTTCH-HHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred             ccccccccccH-HHHHHHHhc-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence            99999999998 788999987 89999999999999999999998888888877765554443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.9e-32  Score=216.79  Aligned_cols=197  Identities=21%  Similarity=0.252  Sum_probs=165.9

Q ss_pred             cCCCcCCCCcccHHHHHhcCChHHHHHhhc-------cCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHH
Q psy17862         43 DSRNPQDKNKRNILEAAEHNDSKTLEALLD-------HDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLE  115 (265)
Q Consensus        43 ~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~-------~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~  115 (265)
                      .+...+..+.||||+||..|+.++|+.|+.       ..|+++|.+|.+|+||||+|             +..|+.++++
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A-------------~~~g~~~iv~   91 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA-------------VLARRRRLVA   91 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH-------------HHHTCHHHHH
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccc-------------cccccccccc
Confidence            333334458899999999999999987753       23899999999999999999             6789999999


Q ss_pred             HHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCC---------------------------------------
Q psy17862        116 ALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA---------------------------------------  156 (265)
Q Consensus       116 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~---------------------------------------  156 (265)
                      +|++ .|++++.++..|.|||++|+..++.++++.+...+.                                       
T Consensus        92 ~Ll~-~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          92 YLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             cccc-cccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            9999 588999999999999999999999988877765310                                       


Q ss_pred             --------CCCCCCCCCChHHHHHHhcCCHHHHHHHH-hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCc
Q psy17862        157 --------DTQKTTIDGWTPLHSACKWNNTECVIVLL-NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPH  227 (265)
Q Consensus       157 --------~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~  227 (265)
                              ..+..+..|.||||+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+. +++++|+++ |+|++
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~-~iv~~Ll~~-gadin  248 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI-EVVMYLIQQ-GASVE  248 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH-HHHHHHHHT-TCCSS
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH-HHHHHHHHC-cCCCC
Confidence                    01234456899999999999999998654 66889999999999999999999998 788999987 89999


Q ss_pred             ccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        228 ILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       228 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      .+|..|+||||+|++.|+.++++.|+ +|
T Consensus       249 ~~d~~G~T~L~~A~~~~~~~iv~lL~-~c  276 (277)
T d2fo1e1         249 AVDATDHTARQLAQANNHHNIVDIFD-RC  276 (277)
T ss_dssp             CCCSSSCCHHHHHHHTTCHHHHHHHH-TT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHH-Hh
Confidence            99999999999999999776666554 44

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.7e-31  Score=220.23  Aligned_cols=205  Identities=28%  Similarity=0.417  Sum_probs=185.9

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHH
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAA  106 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~  106 (265)
                      .+..+.++|++|+..|+.+++++|+.+ |++++..+..|.||+|+++....                    ...+++.|+
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            344567899999999999999999998 88899999999999999986532                    346899999


Q ss_pred             hhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy17862        107 EHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLN  186 (265)
Q Consensus       107 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~  186 (265)
                      ..++.++++.++. .+...+..+..|.||++.|+..++.+++++|+++|++++..+..+.||||.++..++.++++++++
T Consensus       240 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~  318 (408)
T d1n11a_         240 QEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  318 (408)
T ss_dssp             HTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             HhCcHhHhhhhhc-cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecc
Confidence            9999999999988 467788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        187 YGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       187 ~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      .|++++.+|..|.||||+|++.|+. +++++|+++ |++++++|.+|+||||+|++.|+.+.|. +|+..
T Consensus       319 ~g~~in~~d~~G~T~Lh~A~~~g~~-~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~~~~~~~iv~-~L~~~  385 (408)
T d1n11a_         319 HQADVNAKTKLGYSPLHQAAQQGHT-DIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVTD-VLKVV  385 (408)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCHHHHH-HHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHH
Confidence            9999999999999999999999998 799999998 8999999999999999999999776664 44443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=207.32  Aligned_cols=238  Identities=21%  Similarity=0.220  Sum_probs=186.8

Q ss_pred             HHHHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHH
Q psy17862         14 MQQLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRAC   93 (265)
Q Consensus        14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~   93 (265)
                      -..|..|+++|++++..+.  .+  .+...+...+..+.||||+|+..|+.+++++|+.. +......+..+.+|.++++
T Consensus         6 ~~~L~~Ai~~~~~e~vk~L--l~--~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQL--LE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHH--HH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHH--HH--CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc-cccccccccccchhhHHHh
Confidence            3457788888887543332  11  12222333344577888888888888888888877 6667777778888888877


Q ss_pred             HcCc--------------------CchHHHHHHhhCCHHHHHHHHhcCCCCcc----------cCCCCCChHHHHHHHcC
Q psy17862         94 YNDK--------------------NKRKILEAAEHNDSKTLEALLDLDSTLVD----------AVDKDGYSPLHRACYNG  143 (265)
Q Consensus        94 ~~~~--------------------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~----------~~~~~g~t~l~~a~~~~  143 (265)
                      ..+.                    ....++.++..++...+..++... ...+          .....|.||||+|++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhc-ccccccccchhhhhhhcccCchHHHHHHHcC
Confidence            5543                    346888899999999998888742 2222          23456899999999999


Q ss_pred             CHHHHHHHHHc-CCCCCCCCCCCChHHHHHHhc----CCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHH
Q psy17862        144 HANIVELLIQW-GADTQKTTIDGWTPLHSACKW----NNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMIL  218 (265)
Q Consensus       144 ~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~----~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L  218 (265)
                      +.+++++|++. |++++..+..|.++++.+...    +..+++++|+++|++++.++..|.||||+|+..|+. +++++|
T Consensus       160 ~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~-~~v~~l  238 (285)
T d1wdya_         160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL-GLVQRL  238 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH-HHHHHH
T ss_pred             CHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcH-HHHHHH
Confidence            99999999975 789999999998887765543    345789999999999999999999999999999998 688888


Q ss_pred             hhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhhh
Q psy17862        219 LSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       219 ~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      ++..|++++.+|.+|.||||+|++.|+.+.++.||+.-.+
T Consensus       239 L~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            8777999999999999999999999999999888876443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=217.90  Aligned_cols=233  Identities=25%  Similarity=0.273  Sum_probs=180.6

Q ss_pred             HHHHHhhcCceeeeeeecccCcccccccCCCcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHc
Q psy17862         16 QLQESIRDGSFNIGQVSAWDDDVVGIEDSRNPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYN   95 (265)
Q Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~   95 (265)
                      .|..|...|+.++.....     ....+....+..+.||||+|+..|+.++|++|+++ |++++.++..|.||||+|+..
T Consensus         3 pL~~Aa~~g~~~~v~~Ll-----~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           3 PLHVASFMGHLPIVKNLL-----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHH-----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHH
T ss_pred             hHHHHHHCcCHHHHHHHH-----HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHc
Confidence            455666666654332221     11122223345678999999999999999999998 899999999999999999876


Q ss_pred             Cc-----------------------------------------------------CchHHHHHHhhCCHHHHHHHHhcCC
Q psy17862         96 DK-----------------------------------------------------NKRKILEAAEHNDSKTLEALLDLDS  122 (265)
Q Consensus        96 ~~-----------------------------------------------------~~~~l~~a~~~~~~~~~~~ll~~~~  122 (265)
                      +.                                                     ...+++.++..++.++++.|+. .+
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~-~~  155 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RD  155 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TT
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH-cC
Confidence            53                                                     1246667777777888877777 46


Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC------------------------------------------
Q psy17862        123 TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK------------------------------------------  160 (265)
Q Consensus       123 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~------------------------------------------  160 (265)
                      ..++..+..|.+||++|+..++.+++++|+.+|++++.                                          
T Consensus       156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            66777777777788888888888887777777665442                                          


Q ss_pred             ------------------------CCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHH
Q psy17862        161 ------------------------TTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLM  216 (265)
Q Consensus       161 ------------------------~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~  216 (265)
                                              .+..|.||++.++..++.+++++|+++|++++..+..+.||||+++..++. .+++
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~-~~~~  314 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI-KLVK  314 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS-HHHH
T ss_pred             HHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcc-eeee
Confidence                                    233456677777777888899999999999999888999999999999887 6777


Q ss_pred             HHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        217 ILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       217 ~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                      ++++. |++++.+|.+|+||||+|++.|+.+.|+.||+.-.
T Consensus       315 ~ll~~-g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA  354 (408)
T d1n11a_         315 FLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA  354 (408)
T ss_dssp             HHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eeccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            88776 89999999999999999999999999999987643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-30  Score=203.76  Aligned_cols=175  Identities=27%  Similarity=0.312  Sum_probs=139.0

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHH------------------------
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKIL------------------------  103 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~------------------------  103 (265)
                      +..+.||||+|+..|+.+++++|++. |++++..|..|.||||+|+..+.......                        
T Consensus        42 ~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (255)
T d1oy3d_          42 NDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (255)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCCCCccchHHhhcccccccccccc-cccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhc
Confidence            44578999999999999999999998 89999999999999999976543110000                        


Q ss_pred             ---------HHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHH
Q psy17862        104 ---------EAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKT-TIDGWTPLHSAC  173 (265)
Q Consensus       104 ---------~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~  173 (265)
                               .............+....+..++.++..|.||||+|+..++.+++++|++.+++.+.. +..|.||||+|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~  200 (255)
T d1oy3d_         121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV  200 (255)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccc
Confidence                     0000000111111112234456677889999999999999999999999999888754 578999999999


Q ss_pred             hcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCC
Q psy17862        174 KWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVD  225 (265)
Q Consensus       174 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~  225 (265)
                      ..++.+++++|+++|++++.+|..|+||||+|+..++. +++++|+++ |++
T Consensus       201 ~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~-~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP-ILARLLRAH-GAP  250 (255)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH-HHHHHHHHT-TCC
T ss_pred             cccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH-HHHHHHHHc-CCC
Confidence            99999999999999999999999999999999999997 789999998 774

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-30  Score=188.75  Aligned_cols=154  Identities=27%  Similarity=0.374  Sum_probs=137.1

Q ss_pred             CcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCC
Q psy17862         51 NKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDK  130 (265)
Q Consensus        51 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  130 (265)
                      ++.+|+.||..|+.+.|++||.+.+.+++..|..|+||||+|             + .++.+++++|+. .+.+++..+.
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A-------------~-~~~~~~v~~Ll~-~~~~~~~~~~   66 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-------------M-FGSTAIALELLK-QGASPNVQDT   66 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS-------------C-TTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccc-------------c-cccccccccccc-cccccccccc
Confidence            356799999999999999999988889999999999999988             3 477899999998 4677888888


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCC
Q psy17862        131 DGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSH  210 (265)
Q Consensus       131 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~  210 (265)
                      .|.+|++.++..++.+++++++++|++++.++..|.||||+|+..++.+++++|+ .|++++.+|..|+||||+|+..|+
T Consensus        67 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC
Confidence            8999999999999999999999999999999999999999999999999999887 688999999999999999999998


Q ss_pred             hHHHHHHHhhC
Q psy17862        211 SRDVLMILLSH  221 (265)
Q Consensus       211 ~~~~~~~L~~~  221 (265)
                      . +++++|++|
T Consensus       146 ~-~iv~~Ll~h  155 (156)
T d1bd8a_         146 Q-DLVDILQGH  155 (156)
T ss_dssp             H-HHHHHHHTT
T ss_pred             H-HHHHHHHhh
Confidence            7 788888876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-30  Score=197.15  Aligned_cols=186  Identities=21%  Similarity=0.261  Sum_probs=158.7

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhc---cCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCc
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLD---HDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLV  125 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  125 (265)
                      +.|.||||+||..|+.++|+.|+.   ..|++++.+|..|+||||+|             +..|+.++++.|++ .+...
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A-------------~~~~~~~iv~~Ll~-~ga~~   66 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA-------------VITTLPSVVRLLVT-AGASP   66 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH-------------HHTTCHHHHHHHHH-TTCCT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceeh-------------hccccccccccccc-ccccc
Confidence            358899999999999999999986   35889999999999999999             66788888888888 56777


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCC-------------------------------------CC-CCCCCCCCh
Q psy17862        126 DAVDKDGYSPLHRACYNGHANIVELLIQWGA-------------------------------------DT-QKTTIDGWT  167 (265)
Q Consensus       126 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-------------------------------------~~-~~~~~~g~t  167 (265)
                      +.....+.++++.|...++.++++.+.....                                     .. ......+.+
T Consensus        67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (228)
T d1k1aa_          67 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS  146 (228)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhh
Confidence            7777788888888888888777776665321                                     11 123446889


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCch
Q psy17862        168 PLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHY  247 (265)
Q Consensus       168 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~  247 (265)
                      +++.|+..+...+++++++.|.+++.+|..|.||||+|+..|+. +++++|+++ |+|++++|.+|.||||+|++.|+.+
T Consensus       147 ~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL-PLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH-HHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCH-HHHHHHHHC-CCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            99999999999999999999999999999999999999999998 788999988 8999999999999999999999776


Q ss_pred             hhh
Q psy17862        248 GLF  250 (265)
Q Consensus       248 ~~~  250 (265)
                      .|+
T Consensus       225 ivk  227 (228)
T d1k1aa_         225 ILR  227 (228)
T ss_dssp             HHT
T ss_pred             ccC
Confidence            654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.3e-28  Score=188.36  Aligned_cols=187  Identities=28%  Similarity=0.286  Sum_probs=167.3

Q ss_pred             CCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccC
Q psy17862         49 DKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAV  128 (265)
Q Consensus        49 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  128 (265)
                      ..|.||||+||..|+.+++++|+.. +.+++.++..+.++++.+             +..++..................
T Consensus        21 ~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~   86 (209)
T d1ot8a_          21 KTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAA-------------VAADAMGVFQILLRNRATNLNAR   86 (209)
T ss_dssp             HHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH-------------HHTTCHHHHHHHHTCTTCCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhh-cccccccccccccccccc-------------ccccccccccccccccccccccc
Confidence            4678999999999999999999998 889999999999999999             55666666666665444445555


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhC
Q psy17862        129 DKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASH  208 (265)
Q Consensus       129 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~  208 (265)
                      ...+.++.+.+.........+.|...+++++.++..|.||+++++..+..++++.++..+.+++.+|..|.||||+|+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~  166 (209)
T d1ot8a_          87 MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE  166 (209)
T ss_dssp             CTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccc
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhh
Q psy17862        209 SHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFE  251 (265)
Q Consensus       209 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  251 (265)
                      |+. +++++|++. |+|++.+|..|.||||+|++.|+.++|+.
T Consensus       167 g~~-~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         167 GSY-EASKALLDN-FANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             TCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cHH-HHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            998 788899887 89999999999999999999998877754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-28  Score=188.81  Aligned_cols=169  Identities=25%  Similarity=0.356  Sum_probs=147.9

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc--------------------CchHHHHHHh
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK--------------------NKRKILEAAE  107 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~--------------------~~~~l~~a~~  107 (265)
                      +..|.||||+|+..|+.+++++++.. +......+..+.++++.++..++                    ...+++.|+.
T Consensus        34 D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          34 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhhhccccccccc-ccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHH
Confidence            34577899999999999999988887 56666666777788888776543                    2357888899


Q ss_pred             hCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q psy17862        108 HNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNY  187 (265)
Q Consensus       108 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  187 (265)
                      .++.+++++|++ .|.+++..+..|.||||+|+..++.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.
T Consensus       113 ~~~~e~~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~  191 (223)
T d1uoha_         113 KNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ  191 (223)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHH-CCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHC
Confidence            999999999998 5788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHhCCChHHHHHHHhh
Q psy17862        188 GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS  220 (265)
Q Consensus       188 g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~  220 (265)
                      |++++.+|.+|+||||+|. .|+ .+++++|++
T Consensus       192 Gad~~~~d~~g~tpl~~A~-~~~-~~i~~~Ll~  222 (223)
T d1uoha_         192 GASIYIENKEEKTPLQVAK-GGL-GLILKRMVE  222 (223)
T ss_dssp             TCCSCCCCTTSCCHHHHCC-TTH-HHHHHHHHC
T ss_pred             CCCCCCCCCCCCCHHHHHH-CCC-HHHHhcccC
Confidence            9999999999999999984 455 478888875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-29  Score=181.01  Aligned_cols=153  Identities=23%  Similarity=0.314  Sum_probs=121.2

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD  131 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  131 (265)
                      +++||+||..|+.++|++|+++ |++++.+|..|.||||+|             + .++.++++.|++ .+.+++..+..
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A-------------~-~~~~ei~~~Ll~-~~a~~~~~~~~   65 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVM-------------K-LGNPEIARRLLL-RGANPDLKDRT   65 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHC-------------C-SSCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCccccccccc-------------c-cccccccccccc-ccccccccccc
Confidence            3678888888888888888887 778888888888888876             3 467788888877 46677777778


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC-CccccCCCCCcHHHHHHhCCC
Q psy17862        132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV-DVNAQTNGGLTPLHLAASHSH  210 (265)
Q Consensus       132 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~a~~~~~  210 (265)
                      +.++++.++..+..+.++.|+.++.+++..+..|.+|+|+|+..++.+++++|+++|. +++.+|..|.||||+|+..++
T Consensus        66 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          66 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            8888888888888888888888888888778888888888888888888888887764 777778888888888888887


Q ss_pred             hHHHHHHHhhC
Q psy17862        211 SRDVLMILLSH  221 (265)
Q Consensus       211 ~~~~~~~L~~~  221 (265)
                      . +++++|+++
T Consensus       146 ~-~iv~~Ll~~  155 (156)
T d1ihba_         146 N-EVVSLMQAN  155 (156)
T ss_dssp             H-HHHHHHHHT
T ss_pred             H-HHHHHHHhc
Confidence            7 577777765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-28  Score=178.91  Aligned_cols=150  Identities=25%  Similarity=0.319  Sum_probs=138.3

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy17862        101 KILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTEC  180 (265)
Q Consensus       101 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  180 (265)
                      +|+.|+..|+.++++.|+...+.+++..|..|.||||+|+ .++.+++++|++++.+++..+..|.+|++.++..++.++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            4555688999999999999888999999999999999987 588999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        181 VIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       181 v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      ++++++.|++++.+|..|.||||+|+..|+. +++++|+.  +++++.+|..|+||||+|++.|+.++++.|++
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~-~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH-HHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccccccCCCCeeeccccccccc-cccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999998 67788874  68999999999999999999998888877665

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.5e-28  Score=176.41  Aligned_cols=150  Identities=35%  Similarity=0.453  Sum_probs=124.3

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKD  131 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  131 (265)
                      +|||+.|++.|+.++|+.||++ |++++ .|..|+||||+|             +..++.+.+..++.. .......+..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a-------------~~~~~~~~~~~~~~~-~~~~~~~~~~   66 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLA-------------AQYGHFSTTEVLLRA-GVSRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHH-------------HHHTCHHHHHHHHTT-TCCTTCCCTT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCcccccc-------------ccccccccccccccc-cccccccccc
Confidence            4788899999999999999987 66666 578889999988             567888888888774 4444555667


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCCh
Q psy17862        132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHS  211 (265)
Q Consensus       132 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~  211 (265)
                      +.++++.++...+.+.++++..++++++.++..|.||||+|+..++.+++++|++.|++++.+|.+|.||||+|+.+|+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCH
Confidence            77888888888888888888888888888888888999999888888888888888888888888888999999888887


Q ss_pred             HHHHHHH
Q psy17862        212 RDVLMIL  218 (265)
Q Consensus       212 ~~~~~~L  218 (265)
                       +++++|
T Consensus       147 -eiv~lL  152 (153)
T d1awcb_         147 -DLAEIL  152 (153)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHhC
Confidence             677766

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.3e-28  Score=176.59  Aligned_cols=147  Identities=25%  Similarity=0.323  Sum_probs=136.6

Q ss_pred             HhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q psy17862        106 AEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLL  185 (265)
Q Consensus       106 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll  185 (265)
                      +..|+.++++.|++ .|++++.+|..|.||||+|+ .++.+++++|+++|++++..+..|.++++.++..+..++++.|+
T Consensus         9 a~~g~~~~v~~Ll~-~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~   86 (156)
T d1ihba_           9 AARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL   86 (156)
T ss_dssp             HHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHH-CCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccccc
Confidence            78999999999999 58899999999999999886 78999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchh
Q psy17862        186 NYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEP  255 (265)
Q Consensus       186 ~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~  255 (265)
                      +.+.+++..+..|.+|+++|+..++. +++++|+++.+.+++.+|..|+||||+|++.|+.+.++.|++.
T Consensus        87 ~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          87 EFQADVNIEDNEGNLPLHLAAKEGHL-RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999998 6777777776779999999999999999999999988777653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-27  Score=188.03  Aligned_cols=183  Identities=25%  Similarity=0.268  Sum_probs=158.6

Q ss_pred             CcCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc----------------------------
Q psy17862         46 NPQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK----------------------------   97 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~----------------------------   97 (265)
                      .......++.++|+..+..+...+++.. ..+....+..+.|++++|+..+.                            
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (285)
T d1wdya_          67 LRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR  145 (285)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred             ccccccchhhHHHhhcCCccccchhhhh-cccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhc
Confidence            3444567888999999999999999887 45556677889999999987653                            


Q ss_pred             --CchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCCCCCCChHHHH
Q psy17862         98 --NKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNG----HANIVELLIQWGADTQKTTIDGWTPLHS  171 (265)
Q Consensus        98 --~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  171 (265)
                        ...+++.|++.++.+++++|+.+.+.+++..+..|.+++..+...+    ..+++++|+++|++++.++..|.||||+
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence              2457899999999999999999888999999999988887765543    3569999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCC
Q psy17862        172 ACKWNNTECVIVLLNY-GVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILST  231 (265)
Q Consensus       172 a~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~  231 (265)
                      |+..++.+++++|++. |++++.+|.+|.||||+|++.|+. +++++|+++ |+|++++|.
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~-eiv~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-KIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHH-SSCSCCSSC
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCcccC
Confidence            9999999999999975 899999999999999999999998 799999988 999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.5e-27  Score=170.19  Aligned_cols=148  Identities=30%  Similarity=0.334  Sum_probs=135.5

Q ss_pred             CcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q psy17862         86 YSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG  165 (265)
Q Consensus        86 ~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g  165 (265)
                      .|||+.|             ++.|+.++++.|++. |.+.+ .+..|.||||+|+..++.++++.++.........+..+
T Consensus         3 ~t~L~~A-------------a~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (153)
T d1awcb_           3 GKKLLEA-------------ARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD   67 (153)
T ss_dssp             HHHHHHH-------------HHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             CHHHHHH-------------HHCCCHHHHHHHHHc-CCCcc-cccCCCcccccccccccccccccccccccccccccccc
Confidence            3677777             789999999999995 56665 68899999999999999999999999988888888889


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCC
Q psy17862        166 WTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGI  245 (265)
Q Consensus       166 ~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~  245 (265)
                      .++++.++.....++++++...|++++.++..|+||||+|+..|+. +++++|++. |++++.+|..|.||||+|+..|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~-~iv~~ll~~-gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ-EVVELLIKY-GADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccceeeecccccCCccccccccCchHHHhhhhcchh-heeeecccc-ccCCcccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999998 788999988 89999999999999999999997


Q ss_pred             chhhh
Q psy17862        246 HYGLF  250 (265)
Q Consensus       246 ~~~~~  250 (265)
                      .+.++
T Consensus       146 ~eiv~  150 (153)
T d1awcb_         146 EDLAE  150 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-26  Score=179.74  Aligned_cols=157  Identities=22%  Similarity=0.185  Sum_probs=131.0

Q ss_pred             CcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC---CC
Q psy17862         86 YSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQK---TT  162 (265)
Q Consensus        86 ~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~---~~  162 (265)
                      +||||+|             +..|+.+.++.|+...+..++.+|.+|.||||+|+..|+.+++++|+++|++++.   .+
T Consensus         1 n~pLh~A-------------~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~   67 (229)
T d1ixva_           1 NYPLHQA-------------CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD   67 (229)
T ss_dssp             CCHHHHH-------------HHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCC
T ss_pred             CHhHHHH-------------HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccc
Confidence            4788888             6678888888888777777888888888888888888888888888888776642   22


Q ss_pred             C-----------------------------------CCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy17862        163 I-----------------------------------DGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAAS  207 (265)
Q Consensus       163 ~-----------------------------------~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~  207 (265)
                      .                                   .+.|+++.++..++.+++++|+..|.+.+.++..|+||||+|+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~  147 (229)
T d1ixva_          68 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS  147 (229)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhh
Confidence            2                                   34566777777778888999999999999999999999999999


Q ss_pred             CCChHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        208 HSHSRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       208 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      .|+. .++++|++....+++.+|..|.||||+|+..|+.+.++.||++.
T Consensus       148 ~~~~-~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~  195 (229)
T d1ixva_         148 VGSL-KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY  195 (229)
T ss_dssp             HTCH-HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccc-cccccccccccccccccccccCCchhhhcccccHHHHHHHHHhc
Confidence            9998 67788888766889999999999999999999999999999763

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=8.4e-28  Score=191.41  Aligned_cols=191  Identities=20%  Similarity=0.207  Sum_probs=149.6

Q ss_pred             cccHHHHHhcCChHHHHHhhccCCCccccCC-CCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHh-------cCCC
Q psy17862         52 KRNILEAAEHNDSKTLEALLDHDSTLVDAVD-KDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLD-------LDST  123 (265)
Q Consensus        52 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~-------~~~~  123 (265)
                      .+||+.++..+..+.+..++.+.+.+  ..+ .+|+||||+|             +..|+.++++.|+.       ..|+
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n--~~~~~~g~T~Lh~A-------------~~~g~~~~v~~Ll~~~~~~~l~~Ga   65 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN--IIDPRHNRTVLHWI-------------ASNSSAEKSEDLIVHEAKECIAAGA   65 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT--TCCCSSCCCHHHHH-------------HCTTCCSCCTTHHHHHHHHHHHTCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC--cCCCCCCccHHHHH-------------HHcCCHHHHHHHHhcchhHHHHcCC
Confidence            37888666655555555555443544  444 4699999999             55677777666542       2588


Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcC---------------
Q psy17862        124 LVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYG---------------  188 (265)
Q Consensus       124 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g---------------  188 (265)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.++++++...+               
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  145 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  145 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             CccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccch
Confidence            99999999999999999999999999999999999999999999999999999888776664321               


Q ss_pred             --------------------------------CCccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccH
Q psy17862        189 --------------------------------VDVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESA  236 (265)
Q Consensus       189 --------------------------------~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~  236 (265)
                                                      ...+..+..|.||||+++..++.+.+..++... +.+.+..|..|.||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~tp  224 (277)
T d2fo1e1         146 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-GSNKDKQDEDGKTP  224 (277)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS-CCCTTCCCTTCCCH
T ss_pred             hHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccc-cccccccCCCCCCH
Confidence                                            002334567899999999999985444455554 88999999999999


Q ss_pred             HHHHhhcCCchhhhhcchhhhh
Q psy17862        237 REIATRSGIHYGLFETIEPCFN  258 (265)
Q Consensus       237 l~~a~~~~~~~~~~~ll~~~~~  258 (265)
                      ||+|++.|+.+.++.||+...+
T Consensus       225 L~~A~~~g~~~iv~~Ll~~gad  246 (277)
T d2fo1e1         225 IMLAAQEGRIEVVMYLIQQGAS  246 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHCcCC
Confidence            9999999999999988876543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.7e-27  Score=165.57  Aligned_cols=116  Identities=26%  Similarity=0.314  Sum_probs=107.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChH
Q psy17862        133 YSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSR  212 (265)
Q Consensus       133 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~  212 (265)
                      .|||++|++.|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+. 
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~-   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV-   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC-
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch-
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        213 DVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       213 ~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      +++++|+++ |+|++.+|.+|.||||+|.    .+.++.||+
T Consensus        82 ~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~----~~~i~~LL~  118 (118)
T d1myoa_          82 SCVKLLLSK-GADKTVKGPDGLTALEATD----NQAIKALLQ  118 (118)
T ss_dssp             HHHHHHHTT-CCCSSSSSSSTCCCCCTCS----STTTGGGGC
T ss_pred             hhhhhhhcc-cccceeeCCCCCCHHHHHh----HHHHHHhcC
Confidence            788999887 8999999999999999983    345666653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.2e-26  Score=175.47  Aligned_cols=160  Identities=29%  Similarity=0.361  Sum_probs=141.1

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCC----
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDS----  122 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----  122 (265)
                      .+..+.||||+|+..|+.+++++|++. |++++..|..|.|||+++             +..++.++++.++....    
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~-------------~~~~~~~~~~~l~~~~~~~~~  100 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLA-------------CEQGCLASVGVLTQSCTTPHL  100 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHH-------------HHHTCHHHHHHHHHSTTTTSS
T ss_pred             CCCCCCccccccccccccccccccccc-cccccccccccccccccc-------------cccccccccchhhhhcccccc
Confidence            345688999999999999999999998 899999999999999999             66888999999987421    


Q ss_pred             -CCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCc
Q psy17862        123 -TLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTT-IDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLT  200 (265)
Q Consensus       123 -~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  200 (265)
                       .........|.||||.|+..++.+.+++|+..|+.++..+ ..|.||||+|+..|+.+++++|+++|+|++.+|..|+|
T Consensus       101 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~t  180 (221)
T d1iknd_         101 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS  180 (221)
T ss_dssp             SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCC
T ss_pred             cccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCC
Confidence             2233345568999999999999999999999999988765 56999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHhhC
Q psy17862        201 PLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       201 pL~~a~~~~~~~~~~~~L~~~  221 (265)
                      |||+|+..++. +++++|.+.
T Consensus       181 pl~~A~~~~~~-~~~~~l~~~  200 (221)
T d1iknd_         181 PYQLTWGRPST-RIQQQLGQL  200 (221)
T ss_dssp             GGGGCTTSSCH-HHHHHHHTT
T ss_pred             HHHHHHHCCCH-HHHHHHHHc
Confidence            99999999987 778888775

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1.8e-28  Score=201.70  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=145.8

Q ss_pred             CCcccHHHHHhcCChHHHHHh--hccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         50 KNKRNILEAAEHNDSKTLEAL--LDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        50 ~~~~~l~~A~~~g~~~~v~~l--l~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      .+.|+|++|+..|+.+.++++  |...+++++.+|..|+||||+|             +..|+.+++++|++. |.+++.
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~A-------------a~~G~~~~v~~Ll~~-g~~~~~  154 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA-------------AENGHLHVLNRLCEL-APTEIM  154 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH-------------HHTTCHHHHHHHHHS-CTTTHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHH-------------HHCCCHHHHHHHHHc-CCCccc
Confidence            467999999999999887763  4444899999999999999999             778999999999994 666666


Q ss_pred             CC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccC-------
Q psy17862        128 VD--KDGYSPLHRACYNGHANIVELLIQWGADTQ---KTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQT-------  195 (265)
Q Consensus       128 ~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-------  195 (265)
                      .+  ..|.||||+|+..|+.+++++|++.|+...   ..+..+.||++.|+..|+.+++++|++.|++++..+       
T Consensus       155 ~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~  234 (346)
T d2ajaa1         155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYG  234 (346)
T ss_dssp             HHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTT
T ss_pred             cccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcC
Confidence            54  458999999999999999999999987653   334456788889999999999999998875532211       


Q ss_pred             --------------------------CC----------------CCcHHHHHHhCCChHHHHHHHhhCCCCC----Cccc
Q psy17862        196 --------------------------NG----------------GLTPLHLAASHSHSRDVLMILLSHPNVD----PHIL  229 (265)
Q Consensus       196 --------------------------~~----------------g~tpL~~a~~~~~~~~~~~~L~~~~~~~----~~~~  229 (265)
                                                ..                +.++++.++..++. +++++|++.+...    .+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~l-d~v~~Ll~~~~~~~~~~~~~~  313 (346)
T d2ajaa1         235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL-DDIRFLLSIPGIKALAPTATI  313 (346)
T ss_dssp             TTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGH-HHHHHHHTSTTTGGGSSCCSS
T ss_pred             cHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChH-HHHHHHHhCcChhhhcccccC
Confidence                                      01                12456666666666 6788888764332    2344


Q ss_pred             CCCCccHHHHHhhcCCchhhhhcch
Q psy17862        230 STSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       230 ~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      +.+|.||||+|++.|+.+.|+.||.
T Consensus       314 ~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         314 PGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             TTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHhC
Confidence            5679999999999999888888876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=161.56  Aligned_cols=120  Identities=19%  Similarity=0.187  Sum_probs=96.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCC-cHHHHHHhCCC
Q psy17862        132 GYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGL-TPLHLAASHSH  210 (265)
Q Consensus       132 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~-tpL~~a~~~~~  210 (265)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||+|+|+ .++.+++++|+++|++++.++..+. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            456888888888888888888888888888888888888654 6788888888888888888877765 58888888888


Q ss_pred             hHHHHHHHhhCCCCCCcccCCCCccHHHHHhhcCCchhhhhcch
Q psy17862        211 SRDVLMILLSHPNVDPHILSTSNESAREIATRSGIHYGLFETIE  254 (265)
Q Consensus       211 ~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~  254 (265)
                      . +++++|++. |++++.+|..|+||||+|++.|+.++++.|+.
T Consensus        82 ~-~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 L-DTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             H-HHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             c-ccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            7 677777776 78888888888888888888887777776653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2.7e-24  Score=172.23  Aligned_cols=181  Identities=23%  Similarity=0.382  Sum_probs=149.8

Q ss_pred             HhcCChHHHHHhhccCCCccccC---------CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCC
Q psy17862         59 AEHNDSKTLEALLDHDSTLVDAV---------DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVD  129 (265)
Q Consensus        59 ~~~g~~~~v~~ll~~~~~~~~~~---------d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  129 (265)
                      +++...+.++.+...... .+..         +..+.|||+.|             +..|+.++++.|++ .|++++..|
T Consensus         6 ~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~l~~A-------------~~~G~~~~v~~Ll~-~Gadvn~~d   70 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETD-LEPPVVKRKKTKVKFDDGAVFLAA-------------CSSGDTEEVLRLLE-RGADINYAN   70 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTS-SCCSCCCCSCCCCEECHHHHHHHH-------------HHHTCHHHHHHHHH-HCCCTTCBC
T ss_pred             HhHhhHHHHHHHHhCccc-ccCchhhccccccCCCCchHHHHH-------------HHcCCHHHHHHHHH-CCCCCCccC
Confidence            344445666666654321 2111         12345888888             77899999999998 578899999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccc----------------
Q psy17862        130 KDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNA----------------  193 (265)
Q Consensus       130 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~----------------  193 (265)
                      ..|.||||+|+..|+.+++++|+++|++....+..+.+||+.++..++.++++.|++.|+..+.                
T Consensus        71 ~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~  150 (291)
T d1s70b_          71 VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (291)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999987755332                


Q ss_pred             --------------------------------------------cCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCccc
Q psy17862        194 --------------------------------------------QTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHIL  229 (265)
Q Consensus       194 --------------------------------------------~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~  229 (265)
                                                                  .+..|.||||+|+..|+. ++++.|++. |++++.+
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~-~~~~~Ll~~-g~din~~  228 (291)
T d1s70b_         151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EVLKLLIQA-RYDVNIK  228 (291)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-HHHHHHHTT-TCCTTCC
T ss_pred             cchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCCh-hhhcccccc-eeccccc
Confidence                                                        345677888999999887 788888887 8999999


Q ss_pred             CCCCccHHHHHhhcCCchhhhhcchhh
Q psy17862        230 STSNESAREIATRSGIHYGLFETIEPC  256 (265)
Q Consensus       230 ~~~g~t~l~~a~~~~~~~~~~~ll~~~  256 (265)
                      +..|.||||+|+..|+.++|+.||+.-
T Consensus       229 ~~~g~TpL~~A~~~g~~~iv~lLl~~G  255 (291)
T d1s70b_         229 DYDGWTPLHAAAHWGKEEACRILVENL  255 (291)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999888764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-25  Score=156.02  Aligned_cols=120  Identities=25%  Similarity=0.331  Sum_probs=110.0

Q ss_pred             CCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q psy17862         85 GYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTID  164 (265)
Q Consensus        85 g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  164 (265)
                      +.++||+|             +..|+.+++++|++ .|++++.++..|.||+|+|+ .|+.+++++|+++|++++.++..
T Consensus         3 ~~~~L~~A-------------a~~G~~~~v~~Ll~-~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~   67 (125)
T d1bi7b_           3 SADWLATA-------------AARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA   67 (125)
T ss_dssp             STTHHHHH-------------HHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT
T ss_pred             ChhHHHHH-------------HHCCCHHHHHHHHH-cCCccccccccccccccccc-ccccccccccccccccccccccc
Confidence            45677777             78999999999998 57899999999999999775 79999999999999999999887


Q ss_pred             CC-hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhh
Q psy17862        165 GW-TPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLS  220 (265)
Q Consensus       165 g~-t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~  220 (265)
                      +. ||||+|++.|+.+++++|+++|++++.+|..|+||||+|+.+|+. +++++|++
T Consensus        68 ~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~-~~v~~Lls  123 (125)
T d1bi7b_          68 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR-DVARYLRA  123 (125)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH-HHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCH-HHHHHHHh
Confidence            76 699999999999999999999999999999999999999999998 78888875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.7e-25  Score=178.49  Aligned_cols=179  Identities=16%  Similarity=0.111  Sum_probs=106.6

Q ss_pred             CCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCccc
Q psy17862         48 QDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDA  127 (265)
Q Consensus        48 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  127 (265)
                      ++.+.||||+|+..|+.++|+.|++. |++++.+|..|+||||.|+..++       ....+.++.+..++.   .....
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~-------~~~~~~~~~ll~~l~---~~~~~  172 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVN-------NYDSGTFEALLDYLY---PCLIL  172 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSH-------HHHTTCHHHHHHHHG---GGGGE
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhccc-------chhhhhHHHHHHHHh---hhhhh
Confidence            44566777778877777777777766 67777777777788877754332       012334333322222   23445


Q ss_pred             CCCCCChHHHHHHHcCC----HH--------HHHHHHHcCCCC-CCCCCCCChHHHHHHhcCCHHHH-----HHHHhcCC
Q psy17862        128 VDKDGYSPLHRACYNGH----AN--------IVELLIQWGADT-QKTTIDGWTPLHSACKWNNTECV-----IVLLNYGV  189 (265)
Q Consensus       128 ~~~~g~t~l~~a~~~~~----~~--------~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~v-----~~Ll~~g~  189 (265)
                      .|..|+||||+++..+.    ..        ++.+++..+... ......+.++++.+........+     ..++..  
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  250 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--  250 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--
Confidence            66777777777765433    22        223344443222 22233334444443333322221     222222  


Q ss_pred             CccccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCcccCCCCccHHHHHh
Q psy17862        190 DVNAQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHILSTSNESAREIAT  241 (265)
Q Consensus       190 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~l~~a~  241 (265)
                      .++.+|..|+||||+|++.|+. +++++|+++ |+|++++|..|.|||++|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~-~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNI-SIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCH-HHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCH-HHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            3678899999999999999998 799999998 9999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=153.58  Aligned_cols=118  Identities=26%  Similarity=0.303  Sum_probs=86.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHH
Q psy17862        134 SPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRD  213 (265)
Q Consensus       134 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~  213 (265)
                      ++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.+|.+|+||||+|+.+|+. +
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~-~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV-Q   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH-H
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHH-H
Confidence            467777778888888888877777777777778888888888888888888777777777777788888888877776 6


Q ss_pred             HHHHHhhCCCCCCcccCC-CCccHHHHH--hhcCCchhhhhcc
Q psy17862        214 VLMILLSHPNVDPHILST-SNESAREIA--TRSGIHYGLFETI  253 (265)
Q Consensus       214 ~~~~L~~~~~~~~~~~~~-~g~t~l~~a--~~~~~~~~~~~ll  253 (265)
                      ++++|+++ |++++..+. .|+||++++  .+.|+.++++.|+
T Consensus        82 ~v~~Ll~~-ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          82 VCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             HHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             HHHHHHHc-CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            77777776 777776654 467776655  4556555555544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=165.79  Aligned_cols=164  Identities=24%  Similarity=0.256  Sum_probs=146.3

Q ss_pred             cCCCCcccHHHHHhcCChHHHHHhhccCCCccccCCCCCCcHHHHHHHcCc------------------------CchHH
Q psy17862         47 PQDKNKRNILEAAEHNDSKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDK------------------------NKRKI  102 (265)
Q Consensus        47 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~------------------------~~~~l  102 (265)
                      .+..+.||||+|+..|+.+++++|++. +++++..+..|.++++.|.....                        ...++
T Consensus        36 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (228)
T d1k1aa_          36 YNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL  114 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH
T ss_pred             cCCCCCccceehhcccccccccccccc-cccccccccccccccccccccccccchhhhhhcccccccccccccccccccc
Confidence            345678999999999999999999997 88899999999999999976543                        24678


Q ss_pred             HHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q psy17862        103 LEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVI  182 (265)
Q Consensus       103 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~  182 (265)
                      +.+...........+..............+.++++.|+..+...+++.+++.|..++.++..|.||||+|+..++.++++
T Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  194 (228)
T d1k1aa_         115 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  194 (228)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             ccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHH
Confidence            88888888888888887555555556778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccCCCCCcHHHHHHhCCCh
Q psy17862        183 VLLNYGVDVNAQTNGGLTPLHLAASHSHS  211 (265)
Q Consensus       183 ~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~  211 (265)
                      +|+++|+|++.+|.+|.||||+|+++|+.
T Consensus       195 ~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         195 TLVRSGADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHhCCCc
Confidence            99999999999999999999999998776

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.5e-25  Score=155.55  Aligned_cols=107  Identities=28%  Similarity=0.359  Sum_probs=101.4

Q ss_pred             CcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q psy17862         86 YSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDG  165 (265)
Q Consensus        86 ~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g  165 (265)
                      .|||++|             ++.|+.++++.|++ .|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus         3 ~tpL~~A-------------~~~g~~~~v~~Ll~-~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g   68 (118)
T d1myoa_           3 DKEFMWA-------------LKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH   68 (118)
T ss_dssp             HHHHHHH-------------HHTTCHHHHHHHHT-TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSC
T ss_pred             ChHHHHH-------------HHCCCHHHHHHHHH-hhhccccccccccccccccccccccccccccccccceeeeccccc
Confidence            4677777             78999999999998 578999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy17862        166 WTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       166 ~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~  206 (265)
                      .||||+|+.+++.+++++|+++|++++.+|..|.||||+|.
T Consensus        69 ~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999999999999999883

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.1e-25  Score=177.25  Aligned_cols=150  Identities=20%  Similarity=0.207  Sum_probs=93.1

Q ss_pred             CcCCCCcccHHHHHhcCC---hHHHHHhhccCCCccccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHH--------H
Q psy17862         46 NPQDKNKRNILEAAEHND---SKTLEALLDHDSTLVDAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKT--------L  114 (265)
Q Consensus        46 ~~~~~~~~~l~~A~~~g~---~~~v~~ll~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~--------~  114 (265)
                      ..+..+.||||.|+..++   ...+..+++.....+...|..|+||||+++..         +...+....        +
T Consensus       135 ~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~---------~~~~~~~~~~~~~~~~~~  205 (301)
T d1sw6a_         135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT---------SGMTGCSAAAKYYLDILM  205 (301)
T ss_dssp             BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHH---------HTSTTCHHHHHHHHHHHH
T ss_pred             cCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHH---------hCccccHHHHHHHHHHHH
Confidence            344568899999998764   23333444433446778899999999999531         111122222        3


Q ss_pred             HHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHH-----HHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q psy17862        115 EALLDLDSTLVDAVDKDGYSPLHRACYNGHANIV-----ELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV  189 (265)
Q Consensus       115 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~  189 (265)
                      .+++.............+.++++.+........+     ..++.  ..+|.+|..|+||||+|++.++.+++++|++.|+
T Consensus       206 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA  283 (301)
T d1sw6a_         206 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  283 (301)
T ss_dssp             HHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            3444544444444555566666665544433322     22233  2378889999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHH
Q psy17862        190 DVNAQTNGGLTPLHLAA  206 (265)
Q Consensus       190 ~~~~~~~~g~tpL~~a~  206 (265)
                      +++.+|..|.|||++|+
T Consensus       284 d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         284 DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCCCHHHHcC
Confidence            99999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.4e-23  Score=149.92  Aligned_cols=125  Identities=20%  Similarity=0.241  Sum_probs=93.9

Q ss_pred             ccHHHHHhcCChHHHHHhhccCCCccccC------CCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcc
Q psy17862         53 RNILEAAEHNDSKTLEALLDHDSTLVDAV------DKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVD  126 (265)
Q Consensus        53 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~------d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  126 (265)
                      ..|+.|++.+++..+..++.. |.+++..      +..|+||||+|+..+.          .++.+++++|++ .|.+++
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------~~~~~iv~~Ll~-~gadin   75 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVD----------RTSLHIVDFLVQ-NSGNLD   75 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------TTTHHHHHHHHH-HCSCTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcC----------CCCHHHHHHHHH-cCCChh
Confidence            457789999999999999887 6665543      5667888888855322          466777777777 466777


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q psy17862        127 AVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECVIVLLNYGV  189 (265)
Q Consensus       127 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~  189 (265)
                      .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.++.+++++|++.+.
T Consensus        76 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          76 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            777777788888887777788888877777777777777788877777777777777777653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-23  Score=146.52  Aligned_cols=117  Identities=25%  Similarity=0.418  Sum_probs=105.1

Q ss_pred             HHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHH
Q psy17862        102 ILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGADTQKTTIDGWTPLHSACKWNNTECV  181 (265)
Q Consensus       102 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~v  181 (265)
                      ++.|+..|+.++++.|++ .|.+++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+.+++.+++
T Consensus         5 L~~A~~~G~~~~v~~Ll~-~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            444588999999999998 5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccCC-CCCcHHHHH--HhCCChHHHHHHHhh
Q psy17862        182 IVLLNYGVDVNAQTN-GGLTPLHLA--ASHSHSRDVLMILLS  220 (265)
Q Consensus       182 ~~Ll~~g~~~~~~~~-~g~tpL~~a--~~~~~~~~~~~~L~~  220 (265)
                      ++|+++|++++..+. .|.||++++  +..|+. +++++|+.
T Consensus        84 ~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~-eiv~~L~~  124 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT-QCSQFLYG  124 (130)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC-CHHHHHHH
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHHcChH-HHHHHHHh
Confidence            999999999998765 588887766  566777 68888865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=5.5e-23  Score=156.65  Aligned_cols=177  Identities=27%  Similarity=0.354  Sum_probs=156.0

Q ss_pred             hHHHHHhhccCCCcccc-CCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHc
Q psy17862         64 SKTLEALLDHDSTLVDA-VDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEALLDLDSTLVDAVDKDGYSPLHRACYN  142 (265)
Q Consensus        64 ~~~v~~ll~~~~~~~~~-~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  142 (265)
                      .++|++|+++ |++++. .|.+|.||||+|             +..|+.+++++|+. .+..++..+..+.++++.++..
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A-------------~~~g~~e~v~~Ll~-~g~~~n~~~~~~~~~~~~~~~~   66 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLA-------------ARFARADAAKRLLD-AGADANSQDNTGRTPLHAAVAA   66 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHH-------------HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHH-------------HHcCCHHHHHHHHh-hccccccccccccccccccccc
Confidence            4789999998 889987 589999999999             67899999999999 5788899999999999999999


Q ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        143 GHANIVELLIQWGAD-TQKTTIDGWTPLHSACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       143 ~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      ++............. .......+.++.+.+.........+.|...+++++.++..|.|||++++.++.. .++..++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~-~~~~~l~~~  145 (209)
T d1ot8a_          67 DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNT-EAVNILLMH  145 (209)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcc-eeeeeeccc
Confidence            998887777665433 334456788999999999999999999999999999999999999999999987 677888877


Q ss_pred             CCCCCcccCCCCccHHHHHhhcCCchhhhhcchhhh
Q psy17862        222 PNVDPHILSTSNESAREIATRSGIHYGLFETIEPCF  257 (265)
Q Consensus       222 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~  257 (265)
                       +.+++..|..|.||||+|+..|+.+.++.||+...
T Consensus       146 -~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         146 -HANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             -TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             -cccccccccccccccchhccccHHHHHHHHHHCCC
Confidence             78899999999999999999999999999988654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.6e-22  Score=146.42  Aligned_cols=119  Identities=25%  Similarity=0.306  Sum_probs=96.3

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCccc------CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCChHHHH
Q psy17862        101 KILEAAEHNDSKTLEALLDLDSTLVDA------VDKDGYSPLHRACYN---GHANIVELLIQWGADTQKTTIDGWTPLHS  171 (265)
Q Consensus       101 ~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  171 (265)
                      .+..|++.++...+..++.. |.++..      .+..|.||||+|+..   +..+++++|+++|++++.++..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            46677888888888888774 444333      256688899988874   56788888898888888888888999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhCCChHHHHHHHhhC
Q psy17862        172 ACKWNNTECVIVLLNYGVDVNAQTNGGLTPLHLAASHSHSRDVLMILLSH  221 (265)
Q Consensus       172 a~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL~~a~~~~~~~~~~~~L~~~  221 (265)
                      |+..++.+++++|+++|++++.+|..|.||||+|+..|+. +++++|++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~-~i~~~L~~~  136 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE-HCEELLTQA  136 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHH
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCH-HHHHHHHHh
Confidence            9999999999999988888888888899999999888887 677777764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=3.1e-23  Score=170.19  Aligned_cols=151  Identities=15%  Similarity=0.109  Sum_probs=116.3

Q ss_pred             ccCCCCCCcHHHHHHHcCcCchHHHHHHhhCCHHHHHHH--HhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q psy17862         79 DAVDKDGYSPLHRACYNDKNKRKILEAAEHNDSKTLEAL--LDLDSTLVDAVDKDGYSPLHRACYNGHANIVELLIQWGA  156 (265)
Q Consensus        79 ~~~d~~g~tpl~~A~~~~~~~~~l~~a~~~~~~~~~~~l--l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  156 (265)
                      +.++..|.|||++|             +..|+.++++.+  +...+..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus        84 ~~~~~~~~t~L~~A-------------a~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~  150 (346)
T d2ajaa1          84 HKKGIKSEVICFVA-------------AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP  150 (346)
T ss_dssp             HHHTCCHHHHHHHH-------------HHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HhccCCCCcHHHHH-------------HHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            34556777777777             778888887764  444788999999999999999999999999999999999


Q ss_pred             CCCCCC--CCCChHHHHHHhcCCHHHHHHHHhcCCCcc---ccCCCCCcHHHHHHhCCChHHHHHHHhhCCCCCCccc--
Q psy17862        157 DTQKTT--IDGWTPLHSACKWNNTECVIVLLNYGVDVN---AQTNGGLTPLHLAASHSHSRDVLMILLSHPNVDPHIL--  229 (265)
Q Consensus       157 ~~~~~~--~~g~t~l~~a~~~~~~~~v~~Ll~~g~~~~---~~~~~g~tpL~~a~~~~~~~~~~~~L~~~~~~~~~~~--  229 (265)
                      +++..+  ..|.||||+|+..|+.+++++|++.|++..   ..+.++.||+++|+.+|+. +++++|++. |++++..  
T Consensus       151 ~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~-~iv~~Ll~~-ga~~~~~~~  228 (346)
T d2ajaa1         151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH-NVINFLLDC-PVMLAYAEI  228 (346)
T ss_dssp             TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH-HHHHHHTTS-HHHHHHHHH
T ss_pred             CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHH-HHHHHHHhC-CCCcchHHH
Confidence            988765  458999999999999999999999987653   3445677888889999998 789999886 6655432  


Q ss_pred             -----CCCCccHHHHHhhcC
Q psy17862        230 -----STSNESAREIATRSG  244 (265)
Q Consensus       230 -----~~~g~t~l~~a~~~~  244 (265)
                           ...+.+++..+...+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~  248 (346)
T d2ajaa1         229 HEFEYGEKYVNPFIARHVNR  248 (346)
T ss_dssp             CTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHHcCcHhhhHHHHHhhcc
Confidence                 233345555554444