Psyllid ID: psy17890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEcccccccHHHHHHHccccccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEHHHHHHHccccccccccccEEEEEcccccHcHHHHHHccccccccEEEEEEEEccccHHHccccccc
Coil and Loop (DISEMBL)
mivcdpsqnkvhyegwvphslhyrnddQRLTREAMERYLRDRSDMVIVILHAKVAQKsygnekrffcpppciylygegWRLRQEQLLREGESEQAAQLCAFIgignsdqdmqqldlnn
Flexible Loop (DISEMBL)
mivcdpsqnkvhyegwvphslhyrnddqrLTREAMERYLRDRSDMVIVILHAKVAqksygnekrffcPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN
Low Complexity Region (SEG)
MIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN
Disordered region (IsUnstruct)
**********VHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLR*****QAAQLCAFIGIG*************
Disordered Region (DISOPRED)
*********************************AMERYLRDRSDMVIVILHAKV***********FCPPPCIYLYGEGW*******************CAFIGIGNS***********
Disordered Region (DISEMBL)
MIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN
Disordered Region (DISPRO)
**************************DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE*ESEQAAQLCAFIGIGNS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
P28159	594	Suppressor of hairless pr	yes	N/A	0.779	0.154	0.782	1e-40
Q91880	501	Suppressor of hairless pr	N/A	N/A	0.788	0.185	0.677	3e-35
Q5RFK6	486	Recombining binding prote	yes	N/A	0.864	0.209	0.627	4e-35
Q06330	500	Recombining binding prote	yes	N/A	0.838	0.198	0.656	8e-35
P31266	526	Recombining binding prote	yes	N/A	0.788	0.176	0.688	1e-34
Q3SZ41	487	Recombining binding prote	yes	N/A	0.788	0.190	0.688	2e-34
O02019	518	Suppressor of hairless ho	N/A	N/A	0.949	0.216	0.553	7e-32
O76808	554	Suppressor of hairless ho	yes	N/A	0.830	0.176	0.602	3e-29
O08674	515	Recombining binding prote	no	N/A	0.720	0.165	0.456	5e-18
Q9UBG7	517	Recombining binding prote	no	N/A	0.737	0.168	0.433	3e-17

>sp|P28159|SUH_DROME Suppressor of hairless protein OS=Drosophila melanogaster GN=Su(H) PE=1 SV=1

 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 87/92 (94%)

Query: 26  DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 85
           ++++LTR+AME+Y+R+R+DMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G GWR R E+
Sbjct: 101 EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGSGWRRRYEE 160

Query: 86  LLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
           +L++GE EQ AQLCAFIGIG+SDQDMQQLDLN
Sbjct: 161 MLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLN 192

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Binds directly the 5'-GTGRGAR-3' DNA consensus sequence, which is present in the regulatory region of several genes. Required for neurogenesis in imaginal disks. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Required for transcription of Sim. Also functions independently of Notch pathway, in the development of the bristle sensory organ precursor cell.
Drosophila melanogaster (taxid: 7227)

>sp|Q91880|SUH_XENLA Suppressor of hairless protein homolog OS=Xenopus laevis GN=rbpj PE=1 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/93 (67%), Positives = 78/93 (83%)

Query: 24  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 26  RPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 85

Query: 84  EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           EQ+ R+G SEQ +Q CAFIGIGNS+Q+MQQL+L
Sbjct: 86  EQMERDGCSEQESQPCAFIGIGNSEQEMQQLNL 118

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes (By similarity). Required for the transcriptional activation of ESR1, suggesting that it is required during primary neurogenesis in embryos.

Xenopus laevis (taxid: 8355)

>sp|Q5RFK6|SUH_PONAB Recombining binding protein suppressor of hairless OS=Pongo abelii GN=RBPJ PE=2 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 80/102 (78%)

Query: 15  GWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL 74
            W+      R   +RLT+EAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL
Sbjct: 2   AWIKRKFGERPPPKRLTKEAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYL 61

Query: 75  YGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
            G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 62  MGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Pongo abelii (taxid: 9601)

>sp|Q06330|SUH_HUMAN Recombining binding protein suppressor of hairless OS=Homo sapiens GN=RBPJ PE=1 SV=3

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 79/99 (79%)

Query: 18  PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 77
           P     R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G 
Sbjct: 19  PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78

Query: 78  GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 79  GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 117

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Homo sapiens (taxid: 9606)

>sp|P31266|SUH_MOUSE Recombining binding protein suppressor of hairless OS=Mus musculus GN=Rbpj PE=1 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 78/93 (83%)

Query: 24  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 51  RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 110

Query: 84  EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 111 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 143

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Mus musculus (taxid: 10090)

>sp|Q3SZ41|SUH_BOVIN Recombining binding protein suppressor of hairless OS=Bos taurus GN=RBPJ PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 78/93 (83%)

Query: 24  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 12  RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 71

Query: 84  EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 72  EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 104

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Bos taurus (taxid: 9913)

>sp|O02019|SUH_HALRO Suppressor of hairless homolog OS=Halocynthia roretzi GN=RBP-JK PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 81/112 (72%)

Query: 6   PSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRF 65
           P+QN        P S+      QRLTREAM +YLR+R+D  ++ILHAKVAQKSYGNEKRF
Sbjct: 38  PNQNGGTSTSSKPRSVFENRPPQRLTREAMSKYLRERNDQTLIILHAKVAQKSYGNEKRF 97

Query: 66  FCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
            CPPPC+YL   GW+ +Q+ L    ++ +A Q+ AFIGIG+SDQ+MQQL+L+
Sbjct: 98  LCPPPCLYLMESGWKQKQQILEEADQAPEAGQVHAFIGIGSSDQEMQQLNLD 149

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes.

Halocynthia roretzi (taxid: 7729)

>sp|O76808|SUH_CIOIN Suppressor of hairless homolog OS=Ciona intestinalis GN=Su(H) PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query: 20  SLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGW 79
           SL  +   ++LTR+AM RYL+D +D  +++LHAKVAQKSYGNEKRFFCPPPC+YL G GW
Sbjct: 46  SLREKYPPKKLTRDAMRRYLKDPNDQTLIVLHAKVAQKSYGNEKRFFCPPPCMYLLGNGW 105

Query: 80  RLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
           + +Q+ L  E  S +A QL AFIGIG+S+Q+MQQL L+
Sbjct: 106 KRKQQILEEEEGSSEAGQLHAFIGIGSSEQEMQQLHLD 143

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes (By similarity). Required for the transcriptional expression of Brachyury, suggesting that it participates in notochord differentiation.

Ciona intestinalis (taxid: 7719)

>sp|O08674|RBPJL_MOUSE Recombining binding protein suppressor of hairless-like protein OS=Mus musculus GN=Rbpjl PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 7/92 (7%)

Query: 30  LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLR--QEQLL 87
           + RE +   L+ R +  + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++  Q+Q L
Sbjct: 50  ILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPMQDQAL 109

Query: 88  REGESEQAAQLCAFIGI---GNSDQDMQQLDL 116
           +  E+     +C ++G+     S  + Q+L+ 
Sbjct: 110 QSAET--GPTVCGYMGLDGASGSAPETQKLNF 139

Putative transcription factor, which cooperates with EBNA2 to activate transcription.

Mus musculus (taxid: 10090)

>sp|Q9UBG7|RBPJL_HUMAN Recombining binding protein suppressor of hairless-like protein OS=Homo sapiens GN=RBPJL PE=1 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 30  LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE 89
           + R  + R L+ + +  + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++  Q    
Sbjct: 52  ILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAH 111

Query: 90  GESEQAAQLCAFIGIGN---SDQDMQQLDL 116
              E    +C ++G+ +   S  + Q+L+ 
Sbjct: 112 QAGETGPTVCGYMGLDSASGSATETQKLNF 141

Putative transcription factor, which cooperates with EBNA2 to activate transcription.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
91083357	507	PREDICTED: similar to recombining bindin	0.813	0.189	0.927	1e-47
242019295	501	suppressor of hairless protein, putative	0.949	0.223	0.805	5e-47
328791062	506	PREDICTED: suppressor of hairless protei	0.813	0.189	0.918	5e-47
322795206	511	hypothetical protein SINV_09098 [Solenop	0.813	0.187	0.918	5e-47
383864013	506	PREDICTED: suppressor of hairless protei	0.813	0.189	0.918	5e-47
332029718	509	Suppressor of hairless protein [Acromyrm	0.813	0.188	0.918	5e-47
340714241	506	PREDICTED: suppressor of hairless protei	0.813	0.189	0.918	6e-47
307176269	509	Suppressor of hairless protein [Camponot	0.813	0.188	0.908	4e-46
307206658	506	Suppressor of hairless protein [Harpegna	0.813	0.189	0.887	7e-46
157113375	543	recombining binding protein suppressor o	0.788	0.171	0.849	2e-42

>gi|91083357|ref|XP_975102.1| PREDICTED: similar to recombining binding protein suppressor of hairless [Tribolium castaneum] gi|270008236|gb|EFA04684.1| suppressor of hairless [Tribolium castaneum]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/96 (92%), Positives = 95/96 (98%)

Query: 23  YRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLR 82
           YR +D+RLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWRLR
Sbjct: 39  YRGEDRRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWRLR 98

Query: 83  QEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           QEQ+LREGESEQA+QLCAFIGIGNSDQDMQQLDLNN
Sbjct: 99  QEQMLREGESEQASQLCAFIGIGNSDQDMQQLDLNN 134

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019295|ref|XP_002430097.1| suppressor of hairless protein, putative [Pediculus humanus corporis] gi|212515178|gb|EEB17359.1| suppressor of hairless protein, putative [Pediculus humanus corporis]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 101/113 (89%), Gaps = 1/113 (0%)

Query: 6   PSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRF 65
           P     HYE + P  L ++ +D+RLTREAME+YLR+RSDMVIVILHAKVAQKSYGNEKRF
Sbjct: 25  PPSPPNHYERYAPVPLRHQ-EDRRLTREAMEKYLRERSDMVIVILHAKVAQKSYGNEKRF 83

Query: 66  FCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           FCPPPCIYLYG+GWRLR EQLLREGES+Q+AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 84  FCPPPCIYLYGDGWRLRHEQLLREGESDQSAQLCAFIGIGNSDQDMQQLDLNN 136

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791062|ref|XP_003251510.1| PREDICTED: suppressor of hairless protein [Apis mellifera] gi|380026085|ref|XP_003696792.1| PREDICTED: suppressor of hairless protein-like [Apis florea]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 95/98 (96%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNN 132

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795206|gb|EFZ18028.1| hypothetical protein SINV_09098 [Solenopsis invicta]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 95/98 (96%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 36  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 95

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 96  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNN 133

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864013|ref|XP_003707474.1| PREDICTED: suppressor of hairless protein-like [Megachile rotundata]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 95/98 (96%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNN 132

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029718|gb|EGI69597.1| Suppressor of hairless protein [Acromyrmex echinatior]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 95/98 (96%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRADHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNN 132

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714241|ref|XP_003395639.1| PREDICTED: suppressor of hairless protein-like [Bombus terrestris] gi|350417256|ref|XP_003491333.1| PREDICTED: suppressor of hairless protein-like [Bombus impatiens]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 95/98 (96%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNN 132

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176269|gb|EFN65900.1| Suppressor of hairless protein [Camponotus floridanus]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 94/98 (95%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDM+IVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDQQDQRLTREAMERYLRDRSDMMIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGESEQ AQLCAFIGIGNSDQDMQQLDLNN
Sbjct: 95  MRQEQMLREGESEQNAQLCAFIGIGNSDQDMQQLDLNN 132

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206658|gb|EFN84630.1| Suppressor of hairless protein [Harpegnathos saltator]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/98 (88%), Positives = 95/98 (96%), Gaps = 2/98 (2%)

Query: 23  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 80
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 81  LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +RQEQ+LREGE++Q++QLCAFIGIGNSDQDMQQLDLNN
Sbjct: 95  MRQEQMLREGETDQSSQLCAFIGIGNSDQDMQQLDLNN 132

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113375|ref|XP_001657802.1| recombining binding protein suppressor of hairless [Aedes aegypti] gi|108877792|gb|EAT42017.1| AAEL006419-PA [Aedes aegypti]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 90/93 (96%)

Query: 26  DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 85
           +++RLTREAME+YLRDR++MVIVILHAKVAQKSYGNEKRFFCPPPCIYL+GEGWRLR+EQ
Sbjct: 59  EERRLTREAMEKYLRDRNNMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGEGWRLRKEQ 118

Query: 86  LLREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +LR GESEQ+ QLCAFIGIG+SDQDMQ LDLNN
Sbjct: 119 MLRRGESEQSTQLCAFIGIGSSDQDMQPLDLNN 151

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
FB|FBgn0004837	594	Su(H) "Suppressor of Hairless"	0.830	0.164	0.74	2.2e-38
UNIPROTKB|E2QV83	486	RBPJ "Uncharacterized protein"	0.855	0.207	0.643	1.5e-33
UNIPROTKB|D6R927	382	RBPJ "Recombining-binding prot	0.855	0.264	0.643	1.5e-33
UNIPROTKB|D6R9K5	110	RBPJ "Recombining-binding prot	0.855	0.918	0.643	1.5e-33
UNIPROTKB|D6R9X3	107	RBPJ "Recombining-binding prot	0.855	0.943	0.643	1.5e-33
UNIPROTKB|D6REC2	113	RBPJ "Recombining-binding prot	0.855	0.893	0.643	1.5e-33
UNIPROTKB|I3LDF9	486	RBPJ "Recombining binding prot	0.855	0.207	0.643	1.5e-33
UNIPROTKB|Q5RFK6	486	RBPJ "Recombining binding prot	0.855	0.207	0.633	3.2e-33
UNIPROTKB|D6R946	178	RBPJ "Recombining-binding prot	0.838	0.556	0.656	1.1e-32
UNIPROTKB|Q06330	500	RBPJ "Recombining binding prot	0.838	0.198	0.656	1.1e-32

FB|FBgn0004837 Su(H) "Suppressor of Hairless" [Drosophila melanogaster (taxid:7227)]

 Score = 411 (149.7 bits), Expect = 2.2e-38, P = 2.2e-38
 Identities = 74/100 (74%), Positives = 90/100 (90%)

Query:    18 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 77
             P+  H   ++++LTR+AME+Y+R+R+DMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G 
Sbjct:    95 PYRPHI--EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGS 152

Query:    78 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
             GWR R E++L++GE EQ AQLCAFIGIG+SDQDMQQLDLN
Sbjct:   153 GWRRRYEEMLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLN 192

GO:0007219 "Notch signaling pathway" evidence=IGI;NAS;IMP;TAS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=ISS;IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0003677 "DNA binding" evidence=NAS;IDA;TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=NAS

GO:0046331 "lateral inhibition" evidence=TAS

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0042683 "negative regulation of compound eye cone cell fate specification" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IGI

GO:0043234 "protein complex" evidence=IPI

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0007616 "long-term memory" evidence=IMP

UNIPROTKB|E2QV83 RBPJ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/101 (64%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|D6R927 RBPJ "Recombining-binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/101 (64%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0000982 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D6R9K5 RBPJ "Recombining-binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/101 (64%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D6R9X3 RBPJ "Recombining-binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/101 (64%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D6REC2 RBPJ "Recombining-binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/101 (64%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LDF9 RBPJ "Recombining binding protein suppressor of hairless" [Sus scrofa (taxid:9823)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/101 (64%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q5RFK6 RBPJ "Recombining binding protein suppressor of hairless" [Pongo abelii (taxid:9601)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 64/101 (63%), Positives = 80/101 (79%)

Query:    16 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 75
             W+      R   +RLT+EAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTKEAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:    76 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=ISS

UNIPROTKB|D6R946 RBPJ "Recombining-binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 65/99 (65%), Positives = 79/99 (79%)

Query:    18 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 77
             P     R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G 
Sbjct:    19 PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78

Query:    78 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    79 GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 117

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q06330 RBPJ "Recombining binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 65/99 (65%), Positives = 79/99 (79%)

Query:    18 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 77
             P     R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G 
Sbjct:    19 PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78

Query:    78 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
             GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct:    79 GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 117

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=NAS

GO:0000150 "recombinase activity" evidence=NAS

GO:0003677 "DNA binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IDA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=IMP;TAS

GO:0010467 "gene expression" evidence=TAS

GO:0036302 "atrioventricular canal development" evidence=ISS

GO:0003214 "cardiac left ventricle morphogenesis" evidence=ISS

GO:0030279 "negative regulation of ossification" evidence=ISS

GO:0061314 "Notch signaling involved in heart development" evidence=IC

GO:0001525 "angiogenesis" evidence=ISS

GO:0001837 "epithelial to mesenchymal transition" evidence=ISS

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0035912 "dorsal aorta morphogenesis" evidence=ISS

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISS

GO:0060716 "labyrinthine layer blood vessel development" evidence=ISS

GO:0072554 "blood vessel lumenization" evidence=ISS

GO:0097101 "blood vessel endothelial cell fate specification" evidence=ISS

GO:1901186 "positive regulation of ERBB signaling pathway" evidence=ISS

GO:1901189 "positive regulation of ephrin receptor signaling pathway" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0003160 "endocardium morphogenesis" evidence=ISS

GO:0003198 "epithelial to mesenchymal transition involved in endocardial cushion formation" evidence=ISS

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=ISS

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZ41	SUH_BOVIN	No assigned EC number	0.6881	0.7881	0.1909	yes	N/A
P28159	SUH_DROME	No assigned EC number	0.7826	0.7796	0.1548	yes	N/A
P31266	SUH_MOUSE	No assigned EC number	0.6881	0.7881	0.1768	yes	N/A
Q5RFK6	SUH_PONAB	No assigned EC number	0.6274	0.8644	0.2098	yes	N/A
Q06330	SUH_HUMAN	No assigned EC number	0.6565	0.8389	0.198	yes	N/A
O76808	SUH_CIOIN	No assigned EC number	0.6020	0.8305	0.1768	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
pfam09271	138	pfam09271, LAG1-DNAbind, LAG1, DNA binding	2e-34

>gnl|CDD|220160 pfam09271, LAG1-DNAbind, LAG1, DNA binding

 Score =  115 bits (289), Expect = 2e-34
 Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 46  VIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIG 105
            + ILHAKVAQKSYGNEKRF CPPPC+YL G GWRL+ + L   G S+QA ++  +IGIG
Sbjct: 1   TVSILHAKVAQKSYGNEKRFLCPPPCVYLIGPGWRLKPQPLQPNGISDQATEISPYIGIG 60

Query: 106 NSDQ---DMQQLDLNN 118
            S+Q   +MQ+L+ + 
Sbjct: 61  GSEQQQAEMQKLNFDG 76

Members of this family are found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. They adopt a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding. This domain is also known as RHR-N (Rel-homology region) as it related to Rel domain proteins. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF09271	140	LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR0153	100.0
KOG3743|consensus	622		100.0

>PF09271 LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR015351 This domain is found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1

Probab=100.00  E-value=7.2e-36  Score=223.13  Aligned_cols=73  Identities=67%  Similarity=1.253  Sum_probs=55.3

Q ss_pred             EEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhhcc--ccccceeEEEEeecCCcc---ccccccCCC
Q psy17890         46 VIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGE--SEQAAQLCAFIGIGNSDQ---DMQQLDLNN  118 (118)
Q Consensus        46 ~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~g~--~e~~~q~cafiGIgss~q---e~QqL~l~n  118 (118)
                      ||+||||||||||||+|||||||||||||+|++|+.+++++...+.  +++++++|+|||||++++   |+|+|+|++
T Consensus         1 Tv~i~hakVAQKSYG~EKRF~CPPP~v~L~G~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~   78 (140)
T PF09271_consen    1 TVIILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWKIKQQQLQDNGICDSEQGSEPCAFIGIGSSSQSQSEMQQLNLDE   78 (140)
T ss_dssp             EEEEEEESEEE-B-TT-----SS--EEEEESTHHHHHHHHHHHTT---STTTCSEEEEEECSTSSS-----EEE--TT
T ss_pred             CEEEEEhhHhhhhhcccccccCCCCeEEEECCCcCccccccccccccccccCCcceEEEeeCCCCccchhhhhccccc
Confidence            7999999999999999999999999999999999999999988665  788999999999999887   999999975

It adopts a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding []. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3IAG_C 3BRG_C 3NBN_A 2F8X_C 3V79_C.

>KOG3743|consensus

Probab=100.00  E-value=3.8e-34  Score=252.12  Aligned_cols=94  Identities=47%  Similarity=0.895  Sum_probs=90.9

Q ss_pred             CCCcchhhHHHHHHHHhcCCCeEEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhhccccccceeEEEEe
Q psy17890         24 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIG  103 (118)
Q Consensus        24 ~~e~~~Ltr~~m~~yL~~~~~~~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~g~~e~~~q~cafiG  103 (118)
                      ..++..++|..++++.+.++++||.|+||||||||||||||||||||||||+|++|+.++.|+.+++++|+++++|+|||
T Consensus       156 ~~q~~ti~r~~~~~~~k~~~l~tv~i~hasVaQKSYGnEKRylCPPpcvYL~G~gw~~~~~q~~~~~~~e~g~~i~~~~g  235 (622)
T KOG3743|consen  156 NLQEDTIHRIILTRSGKESCLVTVSILHASVAQKSYGNEKRYLCPPPCVYLNGSGWRSIKNQSLQDGAGETGAEISAYIG  235 (622)
T ss_pred             ccCcchhhhhHHHHhcCcceeEEEEEeehhhhhhhccccccccCCCCEEEEeccccccccchhhcchhccccceeeeeec
Confidence            36678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCccccccccCC
Q psy17890        104 IGNSDQDMQQLDLN  117 (118)
Q Consensus       104 Igss~qe~QqL~l~  117 (118)
                      ||++.||||+|||+
T Consensus       236 ig~ssqe~qqln~~  249 (622)
T KOG3743|consen  236 IGSSSQEIQQLNFN  249 (622)
T ss_pred             ccccchhhhhhccc
Confidence            99999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
2f8x_C	434	Crystal Structure Of Activated Notch, Csl And Maml		2e-35
3nbn_A	433	Crystal Structure Of A Dimer Of Notch Transcription		2e-35
3iag_C	422	Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site Lengt		3e-35
3brg_C	427	Csl (Rbp-Jk) Bound To Dna Length = 427		3e-35
3brf_A	478	Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C		4e-21
1ttu_A	477	Crystal Structure Of Csl Bound To Dna Length = 477		4e-21

>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 434

Iteration: 1
 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 78/93 (83%)
Query: 24  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 4   RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 63
Query: 84  EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 64  EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 96

>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription Complex Trimers On Hes1 Dna Length = 433

Iteration: 1
 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 78/93 (83%)
Query: 24  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 4   RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 63
Query: 84  EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 64  EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 96

>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site Length = 422

Iteration: 1
 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 77/89 (86%)
Query: 28  QRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 87
           +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++EQ+ 
Sbjct: 3   KRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQME 62
Query: 88  REGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 63  RDGCSEQESQPCAFIGIGNSDQEMQQLNL 91

>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna Length = 427

Iteration: 1
 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 77/89 (86%)
Query: 28  QRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 87
           +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++EQ+ 
Sbjct: 8   KRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQME 67
Query: 88  REGESEQAAQLCAFIGIGNSDQDMQQLDL 116
           R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 68  RDGCSEQESQPCAFIGIGNSDQEMQQLNL 96

>pdb|3BRF|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C2221 Length = 478

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 20/110 (18%)
Query: 28  QRLTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 85
           Q LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L++++
Sbjct: 11  QSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDR 70
Query: 86  LLREGES------------------EQAAQLCAFIGIGNSDQDMQQLDLN 117
           + +  ++                  +QA +L A+IGIG+   + QQLD +
Sbjct: 71  VAQLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFS 120

>pdb|1TTU|A Chain A, Crystal Structure Of Csl Bound To Dna Length = 477

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 20/110 (18%)
Query: 28  QRLTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 85
           Q LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L++++
Sbjct: 10  QSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDR 69
Query: 86  LLREGES------------------EQAAQLCAFIGIGNSDQDMQQLDLN 117
           + +  ++                  +QA +L A+IGIG+   + QQLD +
Sbjct: 70  VAQLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFS 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
3iag_C	422	Recombining binding protein suppressor of hairless	2e-42
3brd_A	477	LIN-12 and GLP-1 phenotype protein 1, isoform A; p	4e-35

>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C* Length = 422

 Score =  142 bits (360), Expect = 2e-42
 Identities = 63/92 (68%), Positives = 77/92 (83%)

Query: 27  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQL 86
            +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++EQ+
Sbjct: 2   PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 61

Query: 87  LREGESEQAAQLCAFIGIGNSDQDMQQLDLNN 118
            R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  
Sbjct: 62  ERDGCSEQESQPCAFIGIGNSDQEMQQLNLEG 93

>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A* Length = 477

 Score =  124 bits (312), Expect = 4e-35
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 20/118 (16%)

Query: 21  LHYRNDDQRLTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEG 78
           L   +  Q LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+G
Sbjct: 3   LGSGDSVQSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQG 62

Query: 79  WRLRQEQLLREGES------------------EQAAQLCAFIGIGNSDQDMQQLDLNN 118
           W+L+++++ +  ++                  +QA +L A+IGIG+   + QQLD + 
Sbjct: 63  WKLKKDRVAQLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFST 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3iag_C	422	Recombining binding protein suppressor of hairless	100.0
3brd_A	477	LIN-12 and GLP-1 phenotype protein 1, isoform A; p	100.0

>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*

Probab=100.00  E-value=7.2e-43  Score=297.03  Aligned_cols=92  Identities=68%  Similarity=1.214  Sum_probs=89.6

Q ss_pred             cchhhHHHHHHHHhcCCCeEEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhhccccccceeEEEEeecC
Q psy17890         27 DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGN  106 (118)
Q Consensus        27 ~~~Ltr~~m~~yL~~~~~~~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~g~~e~~~q~cafiGIgs  106 (118)
                      +++||||+|++||++++|+||+||||||||||||||||||||||||||+|++|+.+++++++++++|+++++||||||||
T Consensus         2 ~~~l~r~~~~~yl~~~~e~tv~ilHakVAQKSYGnEKRFfCPPP~VyL~G~gW~~~~~~~~~~~~~~~~~~~~~~igi~~   81 (422)
T 3iag_C            2 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN   81 (422)
T ss_dssp             CCCCCHHHHHHHHHHCCCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTCCHHHHSEEEEEEESS
T ss_pred             cccccHHHHHHHHhCcCceEEEEEehhhhhhccccccccCCCCCEEEEeCCCccccchhhcccccccCCCceEEEEecCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCCC
Q psy17890        107 SDQDMQQLDLNN  118 (118)
Q Consensus       107 s~qe~QqL~l~n  118 (118)
                      ++||||||+|++
T Consensus        82 s~q~~q~l~~~~   93 (422)
T 3iag_C           82 SDQEMQQLNLEG   93 (422)
T ss_dssp             CSSCCEECCCTT
T ss_pred             CcccccccccCC
Confidence            999999999973

>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*

Probab=100.00  E-value=1.5e-38  Score=273.61  Aligned_cols=96  Identities=50%  Similarity=0.929  Sum_probs=81.2

Q ss_pred             CCCCCcchhhHHHHHHHHhcC--CCeEEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhh----------
Q psy17890         22 HYRNDDQRLTREAMERYLRDR--SDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE----------   89 (118)
Q Consensus        22 ~~~~e~~~Ltr~~m~~yL~~~--~~~~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~----------   89 (118)
                      ..++..++||||+|++||+++  .+++|+||||||||||||||||||||||||||+|++|+.+++++.+.          
T Consensus         4 ~~~~~~~~~~~e~~~~yl~~~~~~~~tv~ilHakVaQKSYG~EKRFfCPPP~vyL~G~~W~~~~~~~~~~~~~~~~s~~~   83 (477)
T 3brd_A            4 GSGDSVQSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVAQLYKTLKASAQK   83 (477)
T ss_dssp             -----CCCCCHHHHHHHHHSHHHHCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTTTC------
T ss_pred             CCCCCcchhhHHHHHHHhhcCCCCceEEEEeecchhhhccccccccCCCCCEEEEecCCccccccccccccccccccccc
Confidence            344556899999999999998  58999999999999999999999999999999999999998866542          


Q ss_pred             -------c-cccccceeEEEEeecCCccccccccCC
Q psy17890         90 -------G-ESEQAAQLCAFIGIGNSDQDMQQLDLN  117 (118)
Q Consensus        90 -------g-~~e~~~q~cafiGIgss~qe~QqL~l~  117 (118)
                             . ..++++++|+|||||++++|+|+|||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~gig~~~~e~q~L~~~  119 (477)
T 3brd_A           84 DAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFS  119 (477)
T ss_dssp             -----------CCTTSEEEEEECSCTTSCCEECCC-
T ss_pred             cccccCccccccccceeEEEeccCCchhhhhhcccc
Confidence                   1 344689999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d3brda2	184	b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL	2e-45

>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: DNA-binding protein LAG-1 (CSL)
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  143 bits (362), Expect = 2e-45
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 20/109 (18%)

Query: 30  LTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 87
           LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L+++++ 
Sbjct: 2   LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 61

Query: 88  REGE------------------SEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +  +                   +QA +L A+IGIG+   + QQLD + 
Sbjct: 62  QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFST 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d3brda2	184	DNA-binding protein LAG-1 (CSL) {Caenorhabditis el	100.0

>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: DNA-binding protein LAG-1 (CSL)
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.2e-44  Score=278.02  Aligned_cols=88  Identities=53%  Similarity=1.025  Sum_probs=79.6

Q ss_pred             hhHHHHHHHH--hcCCCeEEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhhc-----------------
Q psy17890         30 LTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREG-----------------   90 (118)
Q Consensus        30 Ltr~~m~~yL--~~~~~~~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~g-----------------   90 (118)
                      ||||+|++||  ++++|++|+||||||||||||+|||||||||||||+|++|+.+.+++....                 
T Consensus         2 l~~~~~~~~l~~~~~~~~~v~ilHakVAQKSYG~EKRFfCPPP~vyL~G~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T d3brda2           2 LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVAQLYKTLKASAQKDAAIENDP   81 (184)
T ss_dssp             CCHHHHHHHHHSHHHHCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTTTC--------------
T ss_pred             chHHHHHHHHHhcccCceEEEEeechhhhhcccccccccCCCCEEEEecCccCCchhhhcccccccccccccccccccCC
Confidence            8999999999  577999999999999999999999999999999999999999999886432                 


Q ss_pred             -cccccceeEEEEeecCCccccccccCC
Q psy17890         91 -ESEQAAQLCAFIGIGNSDQDMQQLDLN  117 (118)
Q Consensus        91 -~~e~~~q~cafiGIgss~qe~QqL~l~  117 (118)
                       ..+++.++|+|||||++++|||||||+
T Consensus        82 ~~~~~~~~~~~~~gig~s~~~~qqL~l~  109 (184)
T d3brda2          82 IHEQQATELVAYIGIGSDTSERQQLDFS  109 (184)
T ss_dssp             ---CCTTSEEEEEECSCTTSCCEECCC-
T ss_pred             cccccccceeeeeccCcchHHhhhhhcc
Confidence             136789999999999999999999996