Psyllid ID: psy17891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MGRDRFNRGDKPTIYCEGLNSSEIEEEEDRIGESQPFLEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHcccccHHHHHcccccccEEccccccccccccccccccEEEEEcccccEEEEcHHHHHHHHHHHHHHcccccccccccccEEcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEEccccEEEEEHHHHHHcHHHHHHHcccccccccccccEEcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgrdrfnrgdkptiyceglnsseieeeedrigesqpfleqtgryfylgtyigkdedkqhggcegpnAMYVKLISSDGHEFIVKREHALMSGTIKAmlsgpgqfaenetneinfreipSHVLQKVCMYFTYKVrytnssteipefpiaPAIALELLMAANFLDC
Flexible Loop (DISEMBL)
mgrdrfnrgdkptiyceglnsseieeeedrigesqpfleqTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
Low Complexity Region (SEG)
MGRDRFNRGDKPTIYCeglnsseieeeedrigesQPFLEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
Disordered region (IsUnstruct)
*************************************LEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFL**
Disordered Region (DISOPRED)
************************************FLEQTGR**************************VKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTN*STEIPEFPIAPAIALELLMAANFLDC
Disordered Region (DISEMBL)
********GDKPTIYCEGLNSS************QPFLEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
Disordered Region (DISPRO)
*****************************************************D**KQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRDRFNRGDKPTIYCEGLNSSEIEEEEDRIGESQPFLEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
P83941	112	Transcription elongation	yes	N/A	0.668	0.973	0.926	2e-55
P83940	112	Transcription elongation	yes	N/A	0.668	0.973	0.926	2e-55
Q15369	112	Transcription elongation	yes	N/A	0.668	0.973	0.926	2e-55
Q2KII4	112	Transcription elongation	yes	N/A	0.668	0.973	0.926	2e-55
Q54Q05	109	Transcription elongation	yes	N/A	0.601	0.899	0.515	1e-23
Q9USX9	97	Elongin-C OS=Schizosaccha	yes	N/A	0.564	0.948	0.468	1e-15
Q03071	99	Elongin-C OS=Saccharomyce	yes	N/A	0.552	0.909	0.395	3e-12
Q751F9	100	Elongin-C OS=Ashbya gossy	yes	N/A	0.558	0.91	0.389	4e-11

>sp|P83941|ELOC_RAT Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.
Rattus norvegicus (taxid: 10116)

>sp|P83940|ELOC_MOUSE Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.

Mus musculus (taxid: 10090)

>sp|Q15369|ELOC_HUMAN Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.

Homo sapiens (taxid: 9606)

>sp|Q2KII4|ELOC_BOVIN Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.

Bos taurus (taxid: 9913)

>sp|Q54Q05|ELOC_DICDI Transcription elongation factor B polypeptide 1 OS=Dictyostelium discoideum GN=tceb1 PE=3 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 66  NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGP-GQFAENETNEINFREIPSHVLQKV 124
           N+  ++L SS GHEF++ R+ + +SGTIK+MLSG    F E++ NEI FREI + VL+KV
Sbjct: 11  NSDVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKV 70

Query: 125 CMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             YF +K +YTNS+T++PEFPI   + ++LL+AA+FLD 
Sbjct: 71  IQYFYFKNKYTNSTTDLPEFPINEKVVVDLLLAAHFLDT 109

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USX9|ELOC_SCHPO Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 64/94 (68%), Gaps = 2/94 (2%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           YV+LIS DG  FI+++E A +SGTI+A+L+  G F+E + NE  F +I + +L+KVC Y 
Sbjct: 5   YVRLISGDGFVFILEKEIACLSGTIRAILN-EGIFSEAQKNECTFPDIRATLLEKVCEYL 63

Query: 129 TYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
            Y  RY N   +IP+F I P + LELL+ A +L+
Sbjct: 64  HYNYRYKN-QLDIPKFDIPPEMVLELLVTAEYLE 96

Prevents degradation of interacting proteins by the proteasome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03071|ELOC_YEAST Elongin-C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELC1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 6/96 (6%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           +V L+S D  E+ + R  A++S T+KAM+ GP  F E++   I  ++  SH+L+K   Y 
Sbjct: 5   FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61

Query: 129 TYKVRYTNSS---TEIPEFPIAPAIALELLMAANFL 161
            Y ++Y+  S    EIPEF I   ++LELL+AA++L
Sbjct: 62  NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97

Prevents degradation of interacting proteins like PCL6 by the proteasome.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q751F9|ELOC_ASHGO Elongin-C OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ELC1 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           +V L+SSDG  F V RE A++S T+  ML     FAE +  ++    I S +L KV  Y 
Sbjct: 6   HVTLVSSDGKSFEVPRERAMLSPTLAKMLD--SSFAEAKEAKVTLPTIESSMLAKVVEYL 63

Query: 129 TY--KVRYTNSSTEIPEFPIAPAIALELLMAANFL 161
            Y  + ++ +   +IP+F + P I+LELL+AA++L
Sbjct: 64  EYLEEYKHKDDGEDIPQFEVPPEISLELLLAADYL 98

Prevents degradation of interacting proteins by the proteasome.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
321456900	114	hypothetical protein DAPPUDRAFT_203467 [	0.674	0.964	0.927	1e-54
395855293	269	PREDICTED: uncharacterized protein LOC10	0.699	0.423	0.885	2e-54
403299963	136	PREDICTED: transcription elongation fact	0.766	0.919	0.834	2e-54
357622963	146	transcription elongation factor B polype	0.674	0.753	0.909	2e-54
389611263	138	conserved hypothetical protein [Papilio	0.717	0.847	0.872	3e-54
389609371	138	conserved hypothetical protein [Papilio	0.717	0.847	0.872	3e-54
291234559	119	PREDICTED: elongin C-like [Saccoglossus	0.674	0.924	0.918	3e-54
297683085	214	PREDICTED: transcription elongation fact	0.668	0.509	0.926	5e-54
348588430	132	PREDICTED: transcription elongation fact	0.687	0.848	0.910	6e-54
73088652	112	transcription elongation factor B polype	0.668	0.973	0.926	1e-53

>gi|321456900|gb|EFX67997.1| hypothetical protein DAPPUDRAFT_203467 [Daphnia pulex]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 106/110 (96%)

Query: 54  DEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINF 113
           +E+  +GGCEGPNAMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NF
Sbjct: 5   NENNSYGGCEGPNAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNF 64

Query: 114 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 65  REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 114

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395855293|ref|XP_003800100.1| PREDICTED: uncharacterized protein LOC100945098 [Otolemur garnettii]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 107/114 (93%)

Query: 50  YIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETN 109
           ++   E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETN
Sbjct: 156 WLTNGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETN 215

Query: 110 EINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           E+NFREIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 216 EVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 269

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403299963|ref|XP_003940739.1| PREDICTED: transcription elongation factor B polypeptide 1 [Saimiri boliviensis boliviensis]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 112/127 (88%), Gaps = 2/127 (1%)

Query: 37  FLEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAM 96
           FL +  R F+     G  E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAM
Sbjct: 12  FLGKQSRIFHKNKMDG--EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAM 69

Query: 97  LSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLM 156
           LSGPGQFAENETNE+NFREIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLM
Sbjct: 70  LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLM 129

Query: 157 AANFLDC 163
           AANFLDC
Sbjct: 130 AANFLDC 136

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357622963|gb|EHJ74303.1| transcription elongation factor B polypeptide 1 [Danaus plexippus]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 105/110 (95%)

Query: 54  DEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINF 113
            E+K +GGCEGP+AMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NE+NF
Sbjct: 37  SEEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALTSGTIKAMLSGPGQFAENEANEVNF 96

Query: 114 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 97  REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 146

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611263|dbj|BAM19243.1| conserved hypothetical protein [Papilio polytes]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 109/118 (92%), Gaps = 1/118 (0%)

Query: 47  LGTYIGK-DEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAE 105
           LGT  G   ++K +GGCEGP+AMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAE
Sbjct: 21  LGTAAGSVGDEKIYGGCEGPDAMYVKLVSSDGHEFIVKREHALTSGTIKAMLSGPGQFAE 80

Query: 106 NETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           NE NE+NFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 81  NEANEVNFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 138

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609371|dbj|BAM18297.1| conserved hypothetical protein [Papilio xuthus]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 109/118 (92%), Gaps = 1/118 (0%)

Query: 47  LGTYIGKDEDKQ-HGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAE 105
           LGT  G   D++ +GGCEGP+AMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAE
Sbjct: 21  LGTAAGSVGDERVYGGCEGPDAMYVKLVSSDGHEFIVKREHALTSGTIKAMLSGPGQFAE 80

Query: 106 NETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           NE NE+NFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 81  NEANEVNFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 138

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291234559|ref|XP_002737213.1| PREDICTED: elongin C-like [Saccoglossus kowalevskii]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/110 (91%), Positives = 106/110 (96%)

Query: 54  DEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINF 113
           DEDKQ+GGCEGP+AMYVKL+SSDG EFIVKR+HAL SGTIKAMLSGPGQFAENETNE+NF
Sbjct: 10  DEDKQYGGCEGPDAMYVKLVSSDGQEFIVKRDHALTSGTIKAMLSGPGQFAENETNEVNF 69

Query: 114 REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           REIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 70  REIPSHVLCKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 119

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|297683085|ref|XP_002819230.1| PREDICTED: transcription elongation factor B polypeptide 1 [Pongo abelii]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 106 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 165

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 166 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 214

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348588430|ref|XP_003479969.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cavia porcellus]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 106/112 (94%)

Query: 52  GKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEI 111
           G  E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+
Sbjct: 21  GNGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 80

Query: 112 NFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           NFREIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 81  NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 132

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73088652|ref|NP_001002440.2| transcription elongation factor B polypeptide 1 [Danio rerio] gi|63100863|gb|AAH95636.1| Zgc:92635 [Danio rerio] gi|182889662|gb|AAI65485.1| Zgc:92635 protein [Danio rerio]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
UNIPROTKB|Q5ZJT7	112	TCEB1 "Uncharacterized protein	0.668	0.973	0.926	1.2e-51
UNIPROTKB|Q2KII4	112	TCEB1 "Transcription elongatio	0.668	0.973	0.926	1.2e-51
UNIPROTKB|J9P2H3	112	TCEB1 "Uncharacterized protein	0.668	0.973	0.926	1.2e-51
UNIPROTKB|Q15369	112	TCEB1 "Transcription elongatio	0.668	0.973	0.926	1.2e-51
UNIPROTKB|F2Z545	112	TCEB1 "Uncharacterized protein	0.668	0.973	0.926	1.2e-51
MGI|MGI:1915173	112	Tceb1 "transcription elongatio	0.668	0.973	0.926	1.2e-51
RGD|620658	112	Tceb1 "transcription elongatio	0.668	0.973	0.926	1.2e-51
ZFIN|ZDB-GENE-040718-138	112	tceb1b "transcription elongati	0.668	0.973	0.926	1.2e-51
ZFIN|ZDB-GENE-040912-120	113	tceb1a "transcription elongati	0.668	0.964	0.917	1.9e-51
UNIPROTKB|E2R129	151	TCEB1 "Uncharacterized protein	0.662	0.715	0.925	1.1e-50

UNIPROTKB|Q5ZJT7 TCEB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q2KII4 TCEB1 "Transcription elongation factor B polypeptide 1" [Bos taurus (taxid:9913)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|J9P2H3 TCEB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q15369 TCEB1 "Transcription elongation factor B polypeptide 1" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030891 "VCB complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

UNIPROTKB|F2Z545 TCEB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1915173 Tceb1 "transcription elongation factor B (SIII), polypeptide 1" [Mus musculus (taxid:10090)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030891 "VCB complex" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

RGD|620658 Tceb1 "transcription elongation factor B (SIII), polypeptide 1" [Rattus norvegicus (taxid:10116)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0005634 "nucleus" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030891 "VCB complex" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

ZFIN|ZDB-GENE-040718-138 tceb1b "transcription elongation factor B (SIII), polypeptide 1b" [Danio rerio (taxid:7955)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040912-120 tceb1a "transcription elongation factor B (SIII), polypeptide 1a" [Danio rerio (taxid:7955)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 100/109 (91%), Positives = 105/109 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E++ +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:     5 EERNYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 64

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct:    65 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 113

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2R129 TCEB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 100/108 (92%), Positives = 104/108 (96%)

Query:    55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
             E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct:    44 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 103

Query:   115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
             EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLD
Sbjct:   104 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 151

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83940	ELOC_MOUSE	No assigned EC number	0.9266	0.6687	0.9732	yes	N/A
P83941	ELOC_RAT	No assigned EC number	0.9266	0.6687	0.9732	yes	N/A
Q15369	ELOC_HUMAN	No assigned EC number	0.9266	0.6687	0.9732	yes	N/A
Q54Q05	ELOC_DICDI	No assigned EC number	0.5151	0.6012	0.8990	yes	N/A
Q2KII4	ELOC_BOVIN	No assigned EC number	0.9266	0.6687	0.9732	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	1e-35
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	3e-23

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score =  118 bits (299), Expect = 1e-35
 Identities = 42/105 (40%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 67  AMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCM 126
           + Y+KLISSDG  F V+RE A  S TIKAM+   G   EN  N I    + S +L KV  
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENN-NPIPLPNVTSKILSKVIE 59

Query: 127 YFTYKVRYTNS-------STEIPEFP-IAPAIALELLMAANFLDC 163
           Y  + V    S        T   EF  I      EL++AAN+LD 
Sbjct: 60  YCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score = 86.2 bits (214), Expect = 3e-23
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKV--- 124
             +KL SSDG  F V+RE A  S TIKAM+   G       + I    + S +L KV   
Sbjct: 1   KLIKLTSSDGEIFEVEREVARQSKTIKAMIEDLGV-----DDPIPLPNVTSKILAKVIEW 55

Query: 125 CMYFTY 130
           C +   
Sbjct: 56  CKHHKV 61

Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG3473|consensus	112		99.95
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.95
KOG1724|consensus	162		99.92
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.84
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	99.75
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.16
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.06
PHA02713	557	hypothetical protein; Provisional	97.9
PHA03098	534	kelch-like protein; Provisional	97.22
PHA02790	480	Kelch-like protein; Provisional	97.08
KOG4441|consensus	571		96.82
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	92.51
KOG4350|consensus	620		88.63

>KOG3473|consensus

Probab=99.95  E-value=6.2e-28  Score=176.86  Aligned_cols=109  Identities=72%  Similarity=1.240  Sum_probs=104.2

Q ss_pred             CCccCCCCCCCCCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccC
Q psy17891         55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRY  134 (163)
Q Consensus        55 ~~~~~~~~~~~~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~  134 (163)
                      ..+.+|||.++++++|+|+|+||++|.|.+++|..|++||.||.+.+.+.++..++|.+++|+|.+|+||++|+.|+..|
T Consensus         4 ~~~~~~g~egp~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY   83 (112)
T KOG3473|consen    4 QPKPYGGCEGPDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRY   83 (112)
T ss_pred             CCcccCCccCcchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeee
Confidence            34789999999999999999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHhhcccCC
Q psy17891        135 TNSSTEIPEFPIAPAIALELLMAANFLDC  163 (163)
Q Consensus       135 ~~~~~~i~ewdid~e~LfeLL~AAnyLd~  163 (163)
                      .....+||+|+|++++.+|||.|||||+|
T Consensus        84 ~~~s~eiPeF~IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   84 TNSSTEIPEFDIPPEMALELLMAANYLEC  112 (112)
T ss_pred             ccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence            87778899999999999999999999998

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.95  E-value=3e-27  Score=173.01  Aligned_cols=95  Identities=42%  Similarity=0.560  Sum_probs=84.2

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCC---CCCCCC
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSS---TEIPEF  144 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~---~~i~ew  144 (163)
                      .+|+|+|+||++|.|++++|++|++|++|+++.+...+ ...+||||+|+|.+|++|++||+||+.++...   ..+++|
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~-~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w   80 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDE-NNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW   80 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccC-CCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence            68999999999999999999999999999998765433 23699999999999999999999999986543   347899


Q ss_pred             C-----CChHHHHHHHHhhcccCC
Q psy17891        145 P-----IAPAIALELLMAANFLDC  163 (163)
Q Consensus       145 d-----id~e~LfeLL~AAnyLd~  163 (163)
                      |     ++++.||+||.|||||+.
T Consensus        81 D~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       81 DAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC
Confidence            6     999999999999999984

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG1724|consensus

Probab=99.92  E-value=6.8e-25  Score=173.82  Aligned_cols=96  Identities=33%  Similarity=0.446  Sum_probs=82.7

Q ss_pred             CCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCC--------
Q psy17891         66 NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNS--------  137 (163)
Q Consensus        66 ~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~--------  137 (163)
                      .+++|+|+|+||++|.|+.++|++|.+|++++.+.+...++  .+||||+|+|.||++||+||+||+++++.        
T Consensus         3 ~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~--~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~   80 (162)
T KOG1724|consen    3 SKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN--DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELP   80 (162)
T ss_pred             CCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC--CccccCccCHHHHHHHHHHHHHccccccccccccccc
Confidence            56789999999999999999999999999999876643221  58999999999999999999999987431        


Q ss_pred             -CCCCCCCC-----CChHHHHHHHHhhcccCC
Q psy17891        138 -STEIPEFP-----IAPAIALELLMAANFLDC  163 (163)
Q Consensus       138 -~~~i~ewd-----id~e~LfeLL~AAnyLd~  163 (163)
                       ..++++||     +++..||+|+.|||||+.
T Consensus        81 ~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi  112 (162)
T KOG1724|consen   81 EETDIPEWDAEFLKVDQGTLFDLILAANYLDI  112 (162)
T ss_pred             ccCCccHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence             23388996     899999999999999983

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.84  E-value=3.8e-21  Score=129.55  Aligned_cols=62  Identities=44%  Similarity=0.567  Sum_probs=54.9

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhcc
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVR  133 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~  133 (163)
                      ++|+|+|+||++|.|++++|++|++|++||++.+..    +.+||||+|++++|+||++||+||++
T Consensus         1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~----~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen    1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE----DEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC----GTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc----ccccccCccCHHHHHHHHHHHHhcCC
Confidence            479999999999999999999999999999987653    22899999999999999999999973

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=3.6e-18  Score=131.42  Aligned_cols=91  Identities=27%  Similarity=0.276  Sum_probs=77.2

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCC---------C
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNS---------S  138 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~---------~  138 (163)
                      .+|.|+|.||++|+|+..+|..|-+|++|+.+.+.    ..-+||+|+|+|.+|.+|++||+||......         .
T Consensus         2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~----~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks   77 (158)
T COG5201           2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA----CNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS   77 (158)
T ss_pred             CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc----cCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence            47999999999999999999999999999987653    3457999999999999999999999885321         1


Q ss_pred             CCCCCCC-----CChHHHHHHHHhhcccC
Q psy17891        139 TEIPEFP-----IAPAIALELLMAANFLD  162 (163)
Q Consensus       139 ~~i~ewd-----id~e~LfeLL~AAnyLd  162 (163)
                      .++..||     +|+++||++.+|||||+
T Consensus        78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~  106 (158)
T COG5201          78 KPSDFWDRFFMEVDQEMLLEICLAANYLE  106 (158)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHhhcccc
Confidence            2233564     89999999999999997

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.16  E-value=7.6e-06  Score=58.18  Aligned_cols=84  Identities=21%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q psy17891         68 MYVKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI  146 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdi  146 (163)
                      ..++|+..||..|.|++.+ +.+|..+++|+..... .+.....|++++++...++.+++||....           +.+
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~-----------~~~   78 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKF-KESTVPEISLPDVSPEAFEAFLEYMYTGE-----------IEI   78 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTS-TTSSEEEEEETTSCHHHHHHHHHHHHHSE-----------EEE
T ss_pred             CCEEEEECCCEEEeechhhhhccchhhhhccccccc-ccccccccccccccccccccccccccCCc-----------ccC
Confidence            4588888999999999999 5779999999997621 12233478999999999999999995421           123


Q ss_pred             C-hHHHHHHHHhhcccCC
Q psy17891        147 A-PAIALELLMAANFLDC  163 (163)
Q Consensus       147 d-~e~LfeLL~AAnyLd~  163 (163)
                      + .+.+.+|+.+|++|++
T Consensus        79 ~~~~~~~~ll~lA~~~~~   96 (111)
T PF00651_consen   79 NSDENVEELLELADKLQI   96 (111)
T ss_dssp             E-TTTHHHHHHHHHHTTB
T ss_pred             CHHHHHHHHHHHHHHhCc
Confidence            3 6678999999998874

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.06  E-value=1.6e-05  Score=53.00  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=60.9

Q ss_pred             cCCCCEEEecHHHHH-HHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCChHHHH
Q psy17891         74 SSDGHEFIVKREHAL-MSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIAL  152 (163)
Q Consensus        74 SsDG~~F~V~~~aA~-qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~e~Lf  152 (163)
                      ..+|+.|.+++.++. .|..++.|+.....  +.....|++++++...++.+++|+..-.           ..++.+.+.
T Consensus         5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~--~~~~~~i~l~~~~~~~f~~~l~~ly~~~-----------~~~~~~~~~   71 (90)
T smart00225        5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK--ESKKSEIYLDDVSPEDFRALLEFLYTGK-----------LDLPEENVE   71 (90)
T ss_pred             EECCEEEehHHHHHhhcCHHHHHHHcCCCc--cCCCCEEEecCCCHHHHHHHHHeecCce-----------eecCHHHHH
Confidence            457799999999965 58999999986432  2235688999999999999999988631           244556899


Q ss_pred             HHHHhhcccCC
Q psy17891        153 ELLMAANFLDC  163 (163)
Q Consensus       153 eLL~AAnyLd~  163 (163)
                      +|+.+|+|+++
T Consensus        72 ~l~~~a~~~~~   82 (90)
T smart00225       72 ELLELADYLQI   82 (90)
T ss_pred             HHHHHHHHHCc
Confidence            99999999875

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02713 hypothetical protein; Provisional

Probab=97.90  E-value=1.6e-05  Score=73.26  Aligned_cols=79  Identities=16%  Similarity=0.309  Sum_probs=65.1

Q ss_pred             eEEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCC-CCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q psy17891         69 YVKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAE-NETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI  146 (163)
Q Consensus        69 ~V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E-~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdi  146 (163)
                      .|+|+..+|++|.+++.+ |..|..++.|+...  ..| .....|.|.+|+..+|+.||+|+...             .+
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~--~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~-------------~i   91 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTP--MIIRDLVTRVNLQMFDKDAVKNIVQYLYNR-------------HI   91 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCC--chhhccCceEEeccCCHHHHHHHHHHhcCC-------------CC
Confidence            388888779999999999 56899999999742  233 23567899999999999999998862             14


Q ss_pred             ChHHHHHHHHhhcccC
Q psy17891        147 APAIALELLMAANFLD  162 (163)
Q Consensus       147 d~e~LfeLL~AAnyLd  162 (163)
                      +.+.+.+||.||++|+
T Consensus        92 ~~~nv~~ll~aA~~lq  107 (557)
T PHA02713         92 SSMNVIDVLKCADYLL  107 (557)
T ss_pred             CHHHHHHHHHHHHHHC
Confidence            6778999999999987

>PHA03098 kelch-like protein; Provisional

Probab=97.22  E-value=0.0014  Score=59.18  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             EEEE-cCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         70 VKLI-SSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        70 V~L~-SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      |+|+ +.+|++|.+++.+ |..|..++.|+.+.-.     ...|.|+. +..+|+.|++|+..-+           -.++
T Consensus        12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-----~~~i~l~~-~~~~~~~~l~y~Ytg~-----------~~i~   74 (534)
T PHA03098         12 ESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-----ENEINLNI-DYDSFNEVIKYIYTGK-----------INIT   74 (534)
T ss_pred             EEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-----CceEEecC-CHHHHHHHHHHhcCCc-----------eEEc
Confidence            4444 5789999999999 5569999999975321     45788988 9999999999988621           1456


Q ss_pred             hHHHHHHHHhhcccC
Q psy17891        148 PAIALELLMAANFLD  162 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd  162 (163)
                      .+.+.+|+.||++|+
T Consensus        75 ~~~~~~ll~~A~~l~   89 (534)
T PHA03098         75 SNNVKDILSIANYLI   89 (534)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            778999999999986

>PHA02790 Kelch-like protein; Provisional

Probab=97.08  E-value=0.00059  Score=61.70  Aligned_cols=75  Identities=17%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             cCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccc--cCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCChHH
Q psy17891         74 SSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINF--REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAI  150 (163)
Q Consensus        74 SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpL--p~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~e~  150 (163)
                      -.-|++|.++|.+ |..|..++.|+...  ..|... .|.+  .+|+..+|+.||+|+.-           .+-.++.+.
T Consensus        27 ~~~~~~~~~HR~VLAa~S~YFraMF~~~--~~Es~~-~v~~~~~~v~~~~l~~lldy~YT-----------g~l~it~~n   92 (480)
T PHA02790         27 EAIGGNIIVNSTILKKLSPYFRTHLRQK--YTKNKD-PVTRVCLDLDIHSLTSIVIYSYT-----------GKVYIDSHN   92 (480)
T ss_pred             EEcCcEEeeehhhhhhcCHHHHHHhcCC--cccccc-ceEEEecCcCHHHHHHHHHhhee-----------eeEEEeccc
Confidence            3557899999999 77799999999742  334433 3444  38999999999999854           223566778


Q ss_pred             HHHHHHhhcccC
Q psy17891        151 ALELLMAANFLD  162 (163)
Q Consensus       151 LfeLL~AAnyLd  162 (163)
                      +.+|+.||++|+
T Consensus        93 V~~ll~aA~~Lq  104 (480)
T PHA02790         93 VVNLLRASILTS  104 (480)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999997

>KOG4441|consensus

Probab=96.82  E-value=0.0031  Score=58.77  Aligned_cols=80  Identities=29%  Similarity=0.332  Sum_probs=65.4

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |.|.-.+ ++|..+|.+ |..|..++.|+..  +..|.....|.|..|+..+|..+++|+....-           .+..
T Consensus        39 v~L~v~~-~~~~aHR~VLAa~S~YFraMFt~--~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i-----------~i~~  104 (571)
T KOG4441|consen   39 VTLLVGD-REFPAHRVVLAACSPYFRAMFTS--GLKESKQKEINLEGVDPETLELLLDYAYTGKL-----------EISE  104 (571)
T ss_pred             EEEEECC-eeechHHHHHHhccHHHHHHhcC--CcccccceEEEEecCCHHHHHHHHHHhhcceE-----------Eech
Confidence            5565555 999999999 7889999999985  34466778899999999999999999876332           4678


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+-+|+.||++|++
T Consensus       105 ~nVq~ll~aA~~lQi  119 (571)
T KOG4441|consen  105 DNVQELLEAASLLQI  119 (571)
T ss_pred             HhHHHHHHHHHHhhh
Confidence            889999999998873

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=92.51  E-value=0.073  Score=36.97  Aligned_cols=19  Identities=37%  Similarity=0.506  Sum_probs=15.2

Q ss_pred             CCChHHHHHHHHhhcccCC
Q psy17891        145 PIAPAIALELLMAANFLDC  163 (163)
Q Consensus       145 did~e~LfeLL~AAnyLd~  163 (163)
                      +++.+.|++|+.||+||+.
T Consensus        10 ~~~~~~L~~l~~AA~yL~I   28 (78)
T PF01466_consen   10 DVDNDELFDLLNAANYLDI   28 (78)
T ss_dssp             -S-HHHHHHHHHHHHHHT-
T ss_pred             HcCHHHHHHHHHHHHHHcc
Confidence            5688999999999999984

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG4350|consensus

Probab=88.63  E-value=1  Score=41.50  Aligned_cols=97  Identities=22%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             CCccccccceeeceecCCCCCccCCCCCCCCCceEEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCccccccc
Q psy17891         36 PFLEQTGRYFYLGTYIGKDEDKQHGGCEGPNAMYVKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFR  114 (163)
Q Consensus        36 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~s~~V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp  114 (163)
                      .|-+.+.++|+.-.|-                 .|+++-.| .+|...+-+ |..|..+|.||=  +++.|.....|||.
T Consensus        30 ~fS~~~~~l~~~e~y~-----------------DVtfvve~-~rfpAHRvILAaRs~yFRAlLY--gGm~Es~q~~ipLq   89 (620)
T KOG4350|consen   30 NFSQSFDELFTSEDYS-----------------DVTFVVED-TRFPAHRVILAARSSYFRALLY--GGMQESHQQLIPLQ   89 (620)
T ss_pred             chhHHHHHHhhcCccc-----------------ceEEEEec-cccchhhhhHHHHHHHHHHHHh--hhhhhhhhcccccc
Confidence            4667777787774443                 37787777 899999988 778999999995  34556667889999


Q ss_pred             CCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCChHHHHHHHHhhcc
Q psy17891        115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANF  160 (163)
Q Consensus       115 ~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~e~LfeLL~AAny  160 (163)
                      .-++..++.++.|+.--+-.-.        .++.+.++|.|.-|+-
T Consensus        90 ~t~~eAF~~lLrYiYtg~~~l~--------~~~ed~lld~LslAh~  127 (620)
T KOG4350|consen   90 ETNSEAFRALLRYIYTGKIDLA--------GVEEDILLDYLSLAHR  127 (620)
T ss_pred             cccHHHHHHHHHHHhhcceecc--------cchHHHHHHHHHHHHh
Confidence            8889999999999875322110        3566667777766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1vcb_B	112	The Vhl-Elonginc-Elonginb Structure Length = 112		3e-56
2c9w_C	97	Crystal Structure Of Socs-2 In Complex With Elongin		4e-50
1lm8_C	96	Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Comple		5e-50
4b9k_E	97	Pvhl-Elob-Eloc Complex_(2s,4r)-1-(3-Amino-2-Methylb		3e-49
1hv2_A	99	Solution Structure Of Yeast Elongin C In Complex Wi		2e-13
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		2e-05
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		3e-04

>pdb|1VCB|B Chain B, The Vhl-Elonginc-Elonginb Structure Length = 112

Iteration: 1
 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

>pdb|2C9W|C Chain C, Crystal Structure Of Socs-2 In Complex With Elongin-B And Elongin-C At 1.9a Resolution Length = 97

Iteration: 1
 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/96 (95%), Positives = 93/96 (96%)
Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           MYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFREIPSHVL KVCMY
Sbjct: 2   MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 61
Query: 128 FTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           FTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 62  FTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 97

>pdb|1LM8|C Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex Length = 96

Iteration: 1
 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/96 (95%), Positives = 93/96 (96%)
Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           MYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFREIPSHVL KVCMY
Sbjct: 1   MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 60
Query: 128 FTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           FTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 61  FTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96

>pdb|4B9K|E Chain E, Pvhl-Elob-Eloc Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4- Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl) Pyrrolidine-2-Carboxamide Bound Length = 97

Iteration: 1
 Score =  190 bits (482), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/95 (95%), Positives = 92/95 (96%)
Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           MYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFREIPSHVL KVCMY
Sbjct: 2   MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 61
Query: 128 FTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
           FTYKVRYTNSSTEIPEFPIAP IALELLMAANFLD
Sbjct: 62  FTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 96

>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A Von Hippel-Lindau Peptide Length = 99

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           +V L+S D  E+ + R  A++S T+KAM+ GP  F E++   I  ++  SH+L+K   Y 
Sbjct: 5   FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61
Query: 129 TYKVRYTNSS---TEIPEFPIAPAIALELLMAANFL 161
            Y ++Y+  S    EIPEF I   ++LELL+AA++L
Sbjct: 62  NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 64  GPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQK 123
           GP+   +KL SSDG  F V  E A  S TIK ML   G   E + + +    + + +L+K
Sbjct: 1   GPHMPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK 60
Query: 124 VCMYFTY----------KVRYTNSSTEIP----EF-PIAPAIALELLMAANFLD 162
           V  + T+                 + +IP    EF  +      EL++AAN+LD
Sbjct: 61  VIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	4e-61
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	3e-54
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	1e-41
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	3e-15
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	3e-13
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	2e-12
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	4e-10

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score =  183 bits (466), Expect = 4e-61
 Identities = 101/109 (92%), Positives = 105/109 (96%)

Query: 55  EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
           E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score =  165 bits (420), Expect = 3e-54
 Identities = 92/96 (95%), Positives = 93/96 (96%)

Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           MYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFREIPSHVL KVCMY
Sbjct: 1   MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 60

Query: 128 FTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           FTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 61  FTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score =  133 bits (337), Expect = 1e-41
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           +V L+S D  E+ + R  A++S T+KAM+ GP + ++     I  ++  SH+L+K   Y 
Sbjct: 5   FVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESK---GRIELKQFDSHILEKAVEYL 61

Query: 129 TYKVRYTNSST---EIPEFPIAPAIALELLMAANFLD 162
            Y ++Y+  S    EIPEF I   ++LELL+AA++L 
Sbjct: 62  NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLS 98

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 62.9 bits (152), Expect = 3e-13
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 16/110 (14%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNE--INFREIPSHVLQKVCM 126
            V L+S +G  F V ++ A  S  +K  L+  G   + + +E  +    + S VLQKV  
Sbjct: 8   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 67

Query: 127 YFTYKVRYTNSSTEIPEFP--------------IAPAIALELLMAANFLD 162
           +  +         +  +                +   +  E+++AAN+L+
Sbjct: 68  WAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLN 117

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
            + L SSDG  F V+   AL S TI  M+           N +    + S +L KV  Y 
Sbjct: 5   KIVLKSSDGESFEVEEAVALESQTIAHMVEDDC-----VDNGVPLPNVTSKILAKVIEYC 59

Query: 129 TYKVRYTNSSTEIPEFP 145
              V    S  E  E  
Sbjct: 60  KRHVEAAASKAEAVEGA 76

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 54.3 bits (130), Expect = 4e-10
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 21/109 (19%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
            +KL SSDG  F V  E A  S TIK ML   G       + +    + + +L+KV  + 
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWC 56

Query: 129 TY----------KVRYTNSSTEIPEF-----PIAPAIALELLMAANFLD 162
           T+                 + +IP +      +      EL++AAN+LD
Sbjct: 57  THHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	100.0
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.97
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.97
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.97
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	99.94
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.91
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.9
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.89
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.55
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	98.4
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	98.38
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	98.32
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	98.3
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	98.3
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.28
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.27
2vpk_A	116	Myoneurin; transcription regulation, transcription	98.26
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	98.22
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.21
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.2
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	98.18
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.17
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	98.04
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.03
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.91
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	97.9
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	97.76
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	97.47

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=100.00  E-value=2.7e-34  Score=213.63  Aligned_cols=108  Identities=93%  Similarity=1.432  Sum_probs=84.7

Q ss_pred             CccCCCCCCCCCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCC
Q psy17891         56 DKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYT  135 (163)
Q Consensus        56 ~~~~~~~~~~~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~  135 (163)
                      .+.+||+.++++++|+|+|+||++|.|++++|++|++|++||++.+.+.|+.+.+||||+|++.+|+|||+||+||++++
T Consensus         5 ~~~~~~~~~~~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~   84 (112)
T 1vcb_B            5 EKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYT   84 (112)
T ss_dssp             ------------CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccccCCccCCCCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhcc
Confidence            57899999999999999999999999999999999999999998766556566799999999999999999999999987


Q ss_pred             CCCCCCCCCCCChHHHHHHHHhhcccCC
Q psy17891        136 NSSTEIPEFPIAPAIALELLMAANFLDC  163 (163)
Q Consensus       136 ~~~~~i~ewdid~e~LfeLL~AAnyLd~  163 (163)
                      ....++++|+++++.||+||.||||||+
T Consensus        85 ~~~~~i~~w~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           85 NSSTEIPEFPIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             SCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence            6778899999999999999999999985

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.97  E-value=5.3e-32  Score=195.67  Aligned_cols=96  Identities=96%  Similarity=1.434  Sum_probs=83.5

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      ++|+|+|+||++|.|++++|++|++|++||++.+.+.|+.+.+||||+|++.+|+|||+||+||++++.+..++++|+++
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd   80 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   80 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCC
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccC
Confidence            47999999999999999999999999999998766556666899999999999999999999999876667789999999


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      ++.||+||.||||||+
T Consensus        81 ~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           81 PEIALELLMAANFLDC   96 (96)
T ss_dssp             TTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999999985

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.97  E-value=4e-31  Score=190.54  Aligned_cols=96  Identities=96%  Similarity=1.434  Sum_probs=84.2

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      .+|+|+|+||++|.|++.+|.+|.+|++||++.+...|+.+.+||||+|++.+|++||+||+||++++.+..++++|+++
T Consensus         2 ~~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~   81 (97)
T 4ajy_C            2 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   81 (97)
T ss_dssp             CEEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCC
T ss_pred             eEEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCC
Confidence            37999999999999999999999999999998766667778899999999999999999999999987666789999999


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      ++.||+||.|||||||
T Consensus        82 ~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           82 PEIALELLMAANFLDC   97 (97)
T ss_dssp             GGGHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhCC
Confidence            9999999999999998

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.97  E-value=5.8e-31  Score=191.30  Aligned_cols=95  Identities=36%  Similarity=0.691  Sum_probs=85.1

Q ss_pred             CCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCC---CCCCCC
Q psy17891         66 NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTN---SSTEIP  142 (163)
Q Consensus        66 ~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~---~~~~i~  142 (163)
                      ++++|+|+|+||++|.|++++|++|.+|++||++ +.  ++...+||||+|++.+|+|||+||+||++++.   ...+++
T Consensus         2 ~~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~-~~--e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~   78 (99)
T 1hv2_A            2 SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEG-PF--RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIP   78 (99)
T ss_dssp             CCSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHS-ST--TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCC
T ss_pred             CCcEEEEEecCCCEEEECHHHHHHhHHHHHHHhc-cc--ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCC
Confidence            4679999999999999999999999999999997 32  44457899999999999999999999997642   246789


Q ss_pred             CCCCChHHHHHHHHhhcccCC
Q psy17891        143 EFPIAPAIALELLMAANFLDC  163 (163)
Q Consensus       143 ewdid~e~LfeLL~AAnyLd~  163 (163)
                      +|+++++.||+||.||||||+
T Consensus        79 ~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           79 EFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCC
T ss_pred             CccCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999985

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=99.94  E-value=2.1e-27  Score=187.11  Aligned_cols=99  Identities=23%  Similarity=0.307  Sum_probs=80.9

Q ss_pred             CCCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCC--CCCCcccccccCCCHHHHHHHHHHHhhhccCCCC-----
Q psy17891         65 PNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQF--AENETNEINFREIPSHVLQKVCMYFTYKVRYTNS-----  137 (163)
Q Consensus        65 ~~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~--~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~-----  137 (163)
                      .++++|+|+|+||++|.|++++|++|++|++||++.+..  .++...+||||+|++.+|+|||+||+||++++.+     
T Consensus         4 m~~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~   83 (169)
T 3v7d_A            4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDD   83 (169)
T ss_dssp             --CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC----
T ss_pred             CCCCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccc
Confidence            455899999999999999999999999999999976642  1223478999999999999999999999988532     


Q ss_pred             ----CCCCCCC-----CCChHHHHHHHHhhcccCC
Q psy17891        138 ----STEIPEF-----PIAPAIALELLMAANFLDC  163 (163)
Q Consensus       138 ----~~~i~ew-----did~e~LfeLL~AAnyLd~  163 (163)
                          ..++++|     +++++.||+||.|||||+.
T Consensus        84 ~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdI  118 (169)
T 3v7d_A           84 DSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI  118 (169)
T ss_dssp             ----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             cccccccccHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                3468888     5899999999999999984

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.91  E-value=1.8e-25  Score=170.99  Aligned_cols=90  Identities=33%  Similarity=0.449  Sum_probs=76.1

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCC----------
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNS----------  137 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~----------  137 (163)
                      .+|+|+|+||++|.|++++|++|.+|++|+++.+      +++||||+|++.+|+|||+||+||++++..          
T Consensus         2 ~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~------~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~   75 (141)
T 1fs1_B            2 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKR   75 (141)
T ss_dssp             CEEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC------CSSEECTTCCHHHHHHHHHHHHHHTTCC------------
T ss_pred             CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC------CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccc
Confidence            3599999999999999999999999999998753      458999999999999999999999987522          


Q ss_pred             CCCCCCC-----CCChHHHHHHHHhhcccCC
Q psy17891        138 STEIPEF-----PIAPAIALELLMAANFLDC  163 (163)
Q Consensus       138 ~~~i~ew-----did~e~LfeLL~AAnyLd~  163 (163)
                      ..++++|     +++.+.||+||.|||||+.
T Consensus        76 ~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I  106 (141)
T 1fs1_B           76 TDDIPVWDQEFLKVDQGTLFELILAANYLDI  106 (141)
T ss_dssp             -----HHHHHHTCSCHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            3457787     4899999999999999984

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.89  E-value=2e-25  Score=173.87  Aligned_cols=93  Identities=32%  Similarity=0.431  Sum_probs=39.2

Q ss_pred             CCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCC---------
Q psy17891         66 NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTN---------  136 (163)
Q Consensus        66 ~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~---------  136 (163)
                      ++++|+|+|+||++|.|++.+|++|.+|++||++.+.     +.+||||+|++.+|+|||+||+||++++.         
T Consensus         2 ~~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~-----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~   76 (160)
T 2p1m_A            2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCV-----DNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGA   76 (160)
T ss_dssp             ------CCC---------CHHHHTCTTTC-----------------CCTTSCHHHHHHHHHC------------------
T ss_pred             CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCC-----CCceeCCcCcHHHHHHHHHHHHHcccCCCccccccccc
Confidence            3578999999999999999999999999999987542     45899999999999999999999998742         


Q ss_pred             --CCCCCCCC-----CCChHHHHHHHHhhcccCC
Q psy17891        137 --SSTEIPEF-----PIAPAIALELLMAANFLDC  163 (163)
Q Consensus       137 --~~~~i~ew-----did~e~LfeLL~AAnyLd~  163 (163)
                        ...++++|     +++++.||+||.|||||+.
T Consensus        77 ~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I  110 (160)
T 2p1m_A           77 ATSDDDLKAWDADFMKIDQATLFELILAANYLNI  110 (160)
T ss_dssp             ------------------------CHHHHHHTTC
T ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence              23567889     4899999999999999984

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.55  E-value=3.1e-07  Score=64.73  Aligned_cols=81  Identities=19%  Similarity=0.190  Sum_probs=63.9

Q ss_pred             eEEEEcCCC---CEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCC
Q psy17891         69 YVKLISSDG---HEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEF  144 (163)
Q Consensus        69 ~V~L~SsDG---~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ew  144 (163)
                      .|+|+..+|   +.|.+++.+ |..|..+++|+...  ..|.. ..|.|++++..+++.+++|+..-.           .
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~--~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~-----------~   75 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGD--LAEVK-SEIHIPDVEPAAFLILLKYMYSDE-----------I   75 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC--------C-CEEEETTSCHHHHHHHHHHHHHCC-----------C
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCC--cccCC-CeEEeCCCCHHHHHHHHHHHcCCC-----------c
Confidence            478888876   999999999 56899999999853  33444 789999999999999999998621           2


Q ss_pred             CCChHHHHHHHHhhcccCC
Q psy17891        145 PIAPAIALELLMAANFLDC  163 (163)
Q Consensus       145 did~e~LfeLL~AAnyLd~  163 (163)
                      .++.+.+.+|+.||+++++
T Consensus        76 ~~~~~~~~~ll~~A~~~~~   94 (109)
T 2vkp_A           76 DLEADTVLATLYAAKKYIV   94 (109)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            3456789999999999875

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=98.40  E-value=9.1e-07  Score=66.34  Aligned_cols=82  Identities=21%  Similarity=0.262  Sum_probs=63.2

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+.+.+ |..|..+++|+.......+.....|.|++++..+++.+++|+..-           ...++.
T Consensus        50 v~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg-----------~~~i~~  117 (144)
T 2ppi_A           50 AHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSG-----------QIRLNE  117 (144)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTS-----------CCCCCT
T ss_pred             eEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCC-----------CCCCCH
Confidence            66665 68999999999 567999999997532222345678999999999999999999741           123566


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus       118 ~~v~~ll~~A~~l~i  132 (144)
T 2ppi_A          118 DTIQDVVQAADLLLL  132 (144)
T ss_dssp             TTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            789999999999874

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=98.38  E-value=1.7e-06  Score=62.05  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=63.4

Q ss_pred             eEEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         69 YVKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        69 ~V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      .|+|+. +|++|.+++.+ +..|..+++|+...  ..|.....|.|++++..+++.+++|+..-.           ..++
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~-----------~~~~   92 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSG--AVVDQQNVYEIDFVSAEALTALMDFAYTAT-----------LTVS   92 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-------CCSEEECCSSCHHHHHHHHHHHHHSC-----------CCCC
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCC--ccccCCceEEeCCCCHHHHHHHHHHHcCCC-----------CccC
Confidence            366665 68999999999 56799999999853  334556789999999999999999998621           2356


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      .+.+.+|+.||++|++
T Consensus        93 ~~~~~~ll~~A~~~~i  108 (120)
T 2if5_A           93 TANVGDILSAARLLEI  108 (120)
T ss_dssp             GGGHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            7889999999999875

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=98.32  E-value=2.9e-06  Score=61.27  Aligned_cols=75  Identities=19%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+++.+ |..|..+++|+...       ...|.|++++..+++.+++|+..-           ...++.
T Consensus        31 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-------~~~i~l~~~~~~~f~~ll~~~Ytg-----------~~~~~~   91 (121)
T 1buo_A           31 VVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-------SQHYTLDFLSPKTFQQILEYAYTA-----------TLQAKA   91 (121)
T ss_dssp             EEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHHHS-----------CCCCCG
T ss_pred             EEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC-------CcEEEeCCCCHHHHHHHHHhhcCC-----------CcCCCH
Confidence            66664 68999999999 57899999999753       457999999999999999999862           123567


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        92 ~~~~~ll~~A~~~~i  106 (121)
T 1buo_A           92 EDLDDLLYAAEILEI  106 (121)
T ss_dssp             GGHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCC
Confidence            889999999999875

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=98.30  E-value=1.2e-06  Score=64.81  Aligned_cols=76  Identities=13%  Similarity=0.087  Sum_probs=60.8

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|++|.+++.+ |..|..+++|+....      ...|.|++++..+++.+++|++.-.           .+++.
T Consensus        28 v~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~------~~~i~l~~~~~~~f~~lL~fiYtg~-----------~~i~~   89 (135)
T 2yy9_A           28 ATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT------GGSVVLPAGFAEIFGLLLDFFYTGH-----------LALTS   89 (135)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHTCC----------CCEEECGGGHHHHHHHHHHHHHSC-----------CCCCT
T ss_pred             eEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC------CCeEEeCCCCHHHHHHHHHHHhCCC-----------CCCCH
Confidence            66664 68999999998 678999999997532      4579999999999999999998622           24556


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        90 ~~v~~ll~~A~~l~i  104 (135)
T 2yy9_A           90 GNRDQVLLAAKELRV  104 (135)
T ss_dssp             TTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            779999999999975

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=98.30  E-value=2.2e-06  Score=61.82  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=61.9

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|++|.+++.+ |..|..+++|+....      ...|.|++++..+++.+++|+..-.           ..++.
T Consensus        27 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~------~~~i~l~~~~~~~f~~ll~~iYtg~-----------~~~~~   88 (119)
T 3b84_A           27 ATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS------GGSVVLPAGFAEIFGLLLDFFYTGH-----------LALTS   88 (119)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT------CCCEEECGGGHHHHHHHHHHHHHSC-----------CCCCT
T ss_pred             eEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC------CCeEEeCCCCHHHHHHHHHHHcCCC-----------CccCH
Confidence            66664 68999999999 577999999998532      4579999999999999999998621           23456


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        89 ~~v~~ll~~A~~~~i  103 (119)
T 3b84_A           89 GNRDQVLLAARELRV  103 (119)
T ss_dssp             TTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            679999999999875

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=98.28  E-value=4.2e-06  Score=60.66  Aligned_cols=80  Identities=13%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             eEEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccc-cCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q psy17891         69 YVKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINF-REIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI  146 (163)
Q Consensus        69 ~V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpL-p~Vss~iLkkVIewce~h~~~~~~~~~i~ewdi  146 (163)
                      .|+|+. +|++|.+++.+ |..|..+++|+....  .| ....|.| ++++..+++.+++|+..-.           ..+
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~--~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~-----------~~~   95 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQL--KR-NLSVINLDPEINPEGFNILLDFMYTSR-----------LNL   95 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTT--TT-TCSEEECCTTSCHHHHHHHHHHHHHSC-----------CCC
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCc--cC-CCCEEEeCCCCCHHHHHHHHHHHcCCC-----------cCc
Confidence            366665 58999999999 578999999998542  23 4678899 8999999999999998621           234


Q ss_pred             ChHHHHHHHHhhcccCC
Q psy17891        147 APAIALELLMAANFLDC  163 (163)
Q Consensus       147 d~e~LfeLL~AAnyLd~  163 (163)
                      +.+.+.+|+.||++|++
T Consensus        96 ~~~~~~~ll~~A~~~~i  112 (127)
T 1r29_A           96 REGNIMAVMATAMYLQM  112 (127)
T ss_dssp             CTTTHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            56789999999999875

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=98.27  E-value=3.3e-06  Score=63.56  Aligned_cols=80  Identities=21%  Similarity=0.285  Sum_probs=64.2

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|++|.+++.+ +..|..+++|+...  ..|.....|.|++++..+++.+++|+....           ..++.
T Consensus        37 v~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~-----------~~~~~  102 (172)
T 3htm_A           37 CCLCV-AGQEFQAHKAILAARSPVFSAMFEHE--MEESKKNRVEINDVEPEVFKEMMCFIYTGK-----------APNLD  102 (172)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHHSC--CCGGGTTEEEECSSCHHHHHHHHHHHHHSC-----------CTTGG
T ss_pred             eEEEE-CCEEEEeeHHHHHHcCHHHHHHHccC--ccccCCCeEEecCCCHHHHHHHHHHHhCCC-----------CCCcH
Confidence            66665 68999999999 57799999999853  334556789999999999999999998622           13456


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.+|++|++
T Consensus       103 ~~~~~ll~~A~~~~~  117 (172)
T 3htm_A          103 KMADDLLAAADKYAL  117 (172)
T ss_dssp             GTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            778899999998874

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=98.26  E-value=4.8e-06  Score=59.47  Aligned_cols=76  Identities=16%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCccccccc--CCCHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFR--EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI  146 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp--~Vss~iLkkVIewce~h~~~~~~~~~i~ewdi  146 (163)
                      |+|+. +|++|.+++.+ |..|..+++|+....      ...|.|+  +++..+++.+++|+..-.           ..+
T Consensus        25 v~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~------~~~i~l~~~~~~~~~f~~ll~~~Yt~~-----------~~~   86 (116)
T 2vpk_A           25 CTIVI-GEFQFKAHRNVLASFSEYFGAIYRSTS------ENNVFLDQSQVKADGFQKLLEFIYTGT-----------LNL   86 (116)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCC------CSCEECCTTTCCHHHHHHHHHHHHHSC-----------CCC
T ss_pred             EEEEE-CCEEEeccHHHHhhcCHHHHHHHcCCC------CCeEEeecCCCCHHHHHHHHHHHcCCC-----------ccc
Confidence            66655 58999999999 578999999998641      3345555  999999999999998621           234


Q ss_pred             ChHHHHHHHHhhcccCC
Q psy17891        147 APAIALELLMAANFLDC  163 (163)
Q Consensus       147 d~e~LfeLL~AAnyLd~  163 (163)
                      +.+.+.+|+.||++|++
T Consensus        87 ~~~~v~~ll~~A~~~~i  103 (116)
T 2vpk_A           87 DSWNVKEIHQAADYLKV  103 (116)
T ss_dssp             CTTTHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            56789999999999975

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=98.22  E-value=7.5e-06  Score=59.06  Aligned_cols=76  Identities=14%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+++.+ |..|..+++|+...       ...|.|++++..+++.+++|+..-.        ++  .++.
T Consensus        34 v~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~-------~~~i~l~~~~~~~f~~~l~~~Ytg~--------~~--~~~~   95 (116)
T 3fkc_A           34 VTVIV-EDRKFRAHKNILSASSTYFHQLFSVA-------GQVVELSFIRAEIFAEILNYIYSSK--------IV--RVRS   95 (116)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHTTSC--------CC--SCCH
T ss_pred             EEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-------CCEEEeCCCCHHHHHHHHHhhcCCC--------cC--CCCH
Confidence            66664 68999999999 57899999999854       3479999999999999999987511        11  3678


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        96 ~~~~~ll~~A~~l~i  110 (116)
T 3fkc_A           96 DLLDELIKSGQLLGV  110 (116)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            899999999999874

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=98.21  E-value=2.4e-06  Score=62.40  Aligned_cols=76  Identities=16%  Similarity=0.285  Sum_probs=62.1

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCccccccc-CCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFR-EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp-~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      |+|+. +|+.|.+++.+ +..|..+++|+...      ....|.|| +++..+++.+++|+..-.           ..++
T Consensus        36 v~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~------~~~~i~l~~~~~~~~f~~ll~~iYtg~-----------~~i~   97 (129)
T 3ga1_A           36 VSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSFCYTGR-----------LSMN   97 (129)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC------CCSEEECCTTCCHHHHHHHHHHHHHSE-----------EECC
T ss_pred             eEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC------CCCEEEECCCCCHHHHHHHHHHHhCCc-----------cccC
Confidence            66664 79999999999 56899999999864      25679997 899999999999998632           1345


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      .+.+.+|+.||++|++
T Consensus        98 ~~~~~~ll~~A~~~~i  113 (129)
T 3ga1_A           98 VGDQDLLMYTAGFLQI  113 (129)
T ss_dssp             TTTHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            6679999999999874

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=98.20  E-value=5.2e-06  Score=59.86  Aligned_cols=75  Identities=17%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+++.+ |..|..+++|+...       ...|.|+.++..+++.+++|+..-.           ..++.
T Consensus        30 v~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~i~l~~~~~~~f~~ll~~~Ytg~-----------~~i~~   90 (119)
T 2q81_A           30 CTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ-------KDVVHLDISNAAGLGQVLEFMYTAK-----------LSLSP   90 (119)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC-------CSGGGGGGCCHHHHHHHHHHHHHSC-----------CCCCT
T ss_pred             eEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-------CCEEEeCCCCHHHHHHHHHHHcCCC-----------CccCH
Confidence            66664 68999999999 56799999999852       3478899999999999999998621           23456


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        91 ~~~~~ll~~A~~l~i  105 (119)
T 2q81_A           91 ENVDDVLAVATFLQM  105 (119)
T ss_dssp             TTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            679999999999975

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=98.18  E-value=3.5e-06  Score=60.91  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccC-CCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFRE-IPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~-Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      |+|+. +|+.|.+++.+ |..|..+++|+.....    +...|.|++ ++..+++.+++|+..-.           ..++
T Consensus        35 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~----e~~~i~l~~~~~~~~f~~~l~~iYtg~-----------~~~~   98 (125)
T 3ohu_A           35 VTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTK----NDLVVSLPEEVTARGFGPLLQFAYTAK-----------LLLS   98 (125)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCC----SSCEEECCTTCCHHHHHHHHHHHTTSE-----------EEEC
T ss_pred             eEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCC----CCcEEEeCCCCCHHHHHHHHHhHcCCc-----------eEEC
Confidence            66664 68999999999 5679999999986432    256788998 99999999999988521           1345


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      .+.+.+|+.||++|++
T Consensus        99 ~~~v~~ll~~A~~l~i  114 (125)
T 3ohu_A           99 RENIREVIRCAEFLRM  114 (125)
T ss_dssp             TTTHHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            6779999999999874

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=98.17  E-value=3e-06  Score=62.05  Aligned_cols=80  Identities=21%  Similarity=0.285  Sum_probs=63.2

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+++.+ +..|..+++|+...  ..|.....|.|++++..+++.+++|+....           ..++.
T Consensus        28 v~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~   93 (145)
T 4eoz_A           28 CCLCV-AGQEFQAHKAILAARSPVFSAMFEHE--MEESKKNRVEINDVEPEVFKEMMCFIYTGK-----------APNLD   93 (145)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHHSS--SHHHHHTEEEECSSCHHHHHHHHHHHHHSC-----------CTTGG
T ss_pred             eEEEE-CCEEEEeehHHHHHcCHHHHHHHcCC--CcCCCCceEEecCCCHHHHHHHHHhhccCc-----------cCCcH
Confidence            66664 68999999999 57799999999853  223345789999999999999999998632           12456


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.+|+++++
T Consensus        94 ~~~~~ll~~A~~~~~  108 (145)
T 4eoz_A           94 KMADDLLAAADKYAL  108 (145)
T ss_dssp             GTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCH
Confidence            778899999998874

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=98.04  E-value=2.1e-05  Score=58.02  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=62.0

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCccccccc-CCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFR-EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp-~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      |+|+. +|++|.+++.+ |..|..+++|+.....    +...|.|+ +|+...++.+++|++.-.           ..++
T Consensus        39 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~----e~~~i~l~~~v~~~~~~~lL~~~Ytg~-----------~~i~  102 (138)
T 2z8h_A           39 VTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTD----AELTVTLPEEVTVKGFEPLIQFAYTAK-----------LILS  102 (138)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCC----TTEEEECCTTSCHHHHHHHHHHHHHSC-----------CCCC
T ss_pred             eEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCC----CCceEEeCCCCCHHHHHHHHHHhcCCC-----------cccC
Confidence            66665 58999999999 5789999999985422    23578886 899999999999998621           2355


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      .+.+.+|+.||++|++
T Consensus       103 ~~~v~~ll~~A~~~~i  118 (138)
T 2z8h_A          103 KDNVDEVCRCVEFLSV  118 (138)
T ss_dssp             TTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            6779999999999875

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=98.03  E-value=5.9e-06  Score=66.49  Aligned_cols=82  Identities=20%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             EEEEcCCCCEEEecHHHH-HHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREHA-LMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~aA-~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+++.++ ..|..+++|+.......|.....|.|++++..+++.+++|++.-.           ..++.
T Consensus        34 v~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~-----------~~i~~  101 (256)
T 3hve_A           34 AHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ-----------IRLNE  101 (256)
T ss_dssp             EEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSC-----------CCCC-
T ss_pred             eEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCC-----------CcccH
Confidence            66664 689999999995 569999999975432224456789999999999999999998621           13456


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus       102 ~~v~~ll~~A~~l~i  116 (256)
T 3hve_A          102 DTIQDVVQAADLLLL  116 (256)
T ss_dssp             CCHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHCh
Confidence            679999999999874

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=97.91  E-value=3.6e-05  Score=63.48  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             eEEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         69 YVKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        69 ~V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      .|+|+. +|+.|.+++.+ |.+|..+++|+...  ..|.....|.|++++..+++.+++|+..-.           ..+.
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~-----------~~~~  241 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHE--MEESKKNRVEINDVEPEVFKEMMCFIYTGK-----------APNL  241 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-------CCSEEEECSSCHHHHHHHHHHHHHSC-----------CTTH
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccC--ccccCCceEEecCCCHHHHHHHHHhhcCCC-----------CCCh
Confidence            466665 78999999999 67899999999753  345556789999999999999999998621           1234


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      .+.+.+|+.||+++++
T Consensus       242 ~~~~~~ll~~A~~~~~  257 (312)
T 3hqi_A          242 DKMADDLLAAADKYAL  257 (312)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCH
Confidence            5889999999999874

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=97.90  E-value=1.7e-05  Score=57.53  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCccccccc-CCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFR-EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp-~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      |+|+. +|+.|.+++.+ |..|..+++|+.+...    +...|.|+ +|+...++.+++|+..-.-           +++
T Consensus        32 v~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~----e~~~i~l~~~v~~~~f~~lL~~iYtg~~-----------~i~   95 (124)
T 2ihc_A           32 VTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQAD----GELNITLPEEVTVKGFEPLIQFAYTAKL-----------ILS   95 (124)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC-------CEEEECCTTSCHHHHHHHHHHHHHSEE-----------EEE
T ss_pred             EEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCC----CCceEeecCCcCHHHHHHHHHHhcCCCc-----------ccC
Confidence            66655 58999999999 5789999999985421    23568885 8999999999999986321           344


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      .+.+.+|+.||++|++
T Consensus        96 ~~~v~~ll~~A~~~~~  111 (124)
T 2ihc_A           96 KENVDEVCKCVEFLSV  111 (124)
T ss_dssp             TTTHHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            5679999999999874

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=97.76  E-value=1.2e-05  Score=65.66  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=58.4

Q ss_pred             EEEEcC--CCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCccccccc------CCCHHHHHHHHHHHhhhccCCCCCCC
Q psy17891         70 VKLISS--DGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFR------EIPSHVLQKVCMYFTYKVRYTNSSTE  140 (163)
Q Consensus        70 V~L~Ss--DG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp------~Vss~iLkkVIewce~h~~~~~~~~~  140 (163)
                      |+|+..  ||++|.+++.+ |..|..++.|+.+.  ..|.....|.|+      +|+..+++.+++|++.-.-       
T Consensus        35 v~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~--~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~-------  105 (279)
T 3i3n_A           35 ITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQ--FSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI-------  105 (279)
T ss_dssp             EEEECC----CEEEECHHHHHHHCTTSGGGCCC----------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE-------
T ss_pred             eEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCC--CccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc-------
Confidence            777765  79999999999 56799999999743  334556788898      8999999999999986321       


Q ss_pred             CCCCCCChHHHHHHHHhhcccCC
Q psy17891        141 IPEFPIAPAIALELLMAANFLDC  163 (163)
Q Consensus       141 i~ewdid~e~LfeLL~AAnyLd~  163 (163)
                          .++.+.+.+|+.||++|++
T Consensus       106 ----~i~~~~v~~ll~~A~~l~i  124 (279)
T 3i3n_A          106 ----RVSTGSVHEVLELADRFLL  124 (279)
T ss_dssp             ----EEETTTHHHHHHHHHHTTC
T ss_pred             ----ccCHHHHHHHHHHHHHHCc
Confidence                2345668999999998874

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=97.47  E-value=5.3e-05  Score=55.08  Aligned_cols=71  Identities=14%  Similarity=0.051  Sum_probs=56.6

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|+.|.+++.+ |..|..++.           ....|.|++|+..+++.+++|++.-           +-.++.
T Consensus        33 v~l~v-~~~~f~aHk~vLaa~S~yF~~-----------~~~~i~l~~v~~~~f~~ll~fiYtg-----------~~~i~~   89 (119)
T 3m5b_A           33 TLITV-GSQEFPAHSLVLAGVSQQLGR-----------RGQWALGEGISPSTFAQLLNFVYGE-----------SVELQP   89 (119)
T ss_dssp             EEEEE-TTEEEEECHHHHHTTCGGGCC-----------CEEEECCSSCCHHHHHHHHHHHTTC-----------CEEECG
T ss_pred             eEEEE-CCEEEeeEHHHHHHcCHHHhc-----------CCCEEEeCCCCHHHHHHHHHHHcCC-----------CcCcCH
Confidence            66665 79999999999 555877763           1457899999999999999998751           114577


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        90 ~~v~~ll~aA~~l~i  104 (119)
T 3m5b_A           90 GELRPLQEAARALGV  104 (119)
T ss_dssp             GGHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            889999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	2e-45
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	5e-34
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	2e-19
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	2e-16

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 2e-45
 Identities = 92/96 (95%), Positives = 93/96 (96%)

Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           MYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFREIPSHVL KVCMY
Sbjct: 1   MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 60

Query: 128 FTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           FTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 61  FTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (284), Expect = 5e-34
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           +V L+S D  E+ + R  A++S T+KAM+ GP + ++     I  ++  SH+L+K   Y 
Sbjct: 5   FVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESK---GRIELKQFDSHILEKAVEYL 61

Query: 129 TYKVRYTNSS---TEIPEFPIAPAIALELLMAANFLD 162
            Y ++Y+  S    EIPEF I   ++LELL+AA++L 
Sbjct: 62  NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLS 98

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.3 bits (185), Expect = 2e-19
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNE--INFREIPSHVLQKVCM 126
            V L+S +G  F V ++ A  S  +K  L+  G   + + +E  +    + S VLQKV  
Sbjct: 2   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61

Query: 127 YFTY 130
           +  +
Sbjct: 62  WAEH 65

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (164), Expect = 2e-16
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 70  VKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFT 129
           +KL SSDG  F V  E A  S TIK ML   G       + +    + + +L+KV  + T
Sbjct: 3   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCT 56

Query: 130 Y 130
           +
Sbjct: 57  H 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.96
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.87
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.84
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.38
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.34
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	96.81
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	95.05

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=203.14  Aligned_cols=96  Identities=96%  Similarity=1.434  Sum_probs=78.1

Q ss_pred             ceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q psy17891         68 MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIA  147 (163)
Q Consensus        68 ~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid  147 (163)
                      .+|+|+|+||.+|.|++++|++|++|++||++.+.++++.+.+||||+|+|.+|+|||+||+||++++..+.++|+|+++
T Consensus         1 ~~i~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~   80 (96)
T d2c9wc1           1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   80 (96)
T ss_dssp             CEEEEECTTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCC
T ss_pred             CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCC
Confidence            37999999999999999999999999999998776667778899999999999999999999999998878889999999


Q ss_pred             hHHHHHHHHhhcccCC
Q psy17891        148 PAIALELLMAANFLDC  163 (163)
Q Consensus       148 ~e~LfeLL~AAnyLd~  163 (163)
                      ++.|||||.|||||||
T Consensus        81 ~~~l~eLi~AAnyLd~   96 (96)
T d2c9wc1          81 PEIALELLMAANFLDC   96 (96)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhcC
Confidence            9999999999999999

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-30  Score=184.46  Aligned_cols=94  Identities=37%  Similarity=0.729  Sum_probs=84.3

Q ss_pred             CCceEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCC---CCCCCC
Q psy17891         66 NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTN---SSTEIP  142 (163)
Q Consensus        66 ~s~~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~---~~~~i~  142 (163)
                      ++++|+|+|+||.+|.|++++|++|++|++||++.+.   ..+.+||||+|+|.+|+|||+||+||++++.   ....++
T Consensus         2 ~~~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~---e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~   78 (99)
T d1hv2a_           2 SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFR---ESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIP   78 (99)
T ss_dssp             CCSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTT---TCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCC
T ss_pred             CCCeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHccCC---CCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCC
Confidence            5679999999999999999999999999999987543   2356899999999999999999999999853   346689


Q ss_pred             CCCCChHHHHHHHHhhcccC
Q psy17891        143 EFPIAPAIALELLMAANFLD  162 (163)
Q Consensus       143 ewdid~e~LfeLL~AAnyLd  162 (163)
                      +|+++++.||+||.||||||
T Consensus        79 efdvd~~~l~eLi~AAnyLd   98 (99)
T d1hv2a_          79 EFEIPTEMSLELLLAADYLS   98 (99)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhhhC
Confidence            99999999999999999998

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=5.1e-23  Score=140.25  Aligned_cols=68  Identities=25%  Similarity=0.261  Sum_probs=54.8

Q ss_pred             eEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCC--CCcccccccCCCHHHHHHHHHHHhhhccCCC
Q psy17891         69 YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAE--NETNEINFREIPSHVLQKVCMYFTYKVRYTN  136 (163)
Q Consensus        69 ~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E--~~~~~IpLp~Vss~iLkkVIewce~h~~~~~  136 (163)
                      +|+|+|+||++|.|++++|++|++|++||++.+...+  ....+||||+|+|.+|+|||+||+||+++++
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~dp~   71 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNF   71 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCCCC
Confidence            6999999999999999999999999999998764432  3456899999999999999999999999864

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.8e-22  Score=132.20  Aligned_cols=60  Identities=35%  Similarity=0.386  Sum_probs=55.5

Q ss_pred             eEEEEcCCCCEEEecHHHHHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccC
Q psy17891         69 YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRY  134 (163)
Q Consensus        69 ~V~L~SsDG~~F~V~~~aA~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~  134 (163)
                      .|+|+|+||++|.|++++|++|++|++|+++.+      .++||||+|+|.+|+|||+||+||+++
T Consensus         2 ~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~~~------~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2           2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC------CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCEEEecHHHHHHhHHHHHHHhcCC------CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            699999999999999999999999999998754      357999999999999999999999864

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.4e-07  Score=62.99  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|++|.+++.+ |..|+.+++|+....  .++....+-+++|++..++.+++|++.-           +..++.
T Consensus        28 v~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~--~e~~~~~~~~~~v~~~~f~~ll~~~Ytg-----------~~~i~~   93 (122)
T d1r29a_          28 VVIVV-SREQFRAHKTVLMACSGLFYSIFTDQL--KRNLSVINLDPEINPEGFNILLDFMYTS-----------RLNLRE   93 (122)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTT--TTTCSEEECCTTSCHHHHHHHHHHHHHS-----------CCCCCT
T ss_pred             EEEEE-CCEEEEEehHHhhhCCHHHHHHhccch--hhhcceeeeecccCHHHHHHHHhhhcCC-----------eecCch
Confidence            66764 78899999999 578999999997542  3444555666899999999999999851           124566


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        94 ~~v~~ll~~A~~l~i  108 (122)
T d1r29a_          94 GNIMAVMATAMYLQM  108 (122)
T ss_dssp             TTHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHCc
Confidence            779999999999985

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-06  Score=62.85  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=61.9

Q ss_pred             EEEEcCCCCEEEecHHH-HHHHHHHHHHHcCCCCCCCCCcccccccCCCHHHHHHHHHHHhhhccCCCCCCCCCCCCCCh
Q psy17891         70 VKLISSDGHEFIVKREH-ALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP  148 (163)
Q Consensus        70 V~L~SsDG~~F~V~~~a-A~qS~~Ir~mle~~~~~~E~~~~~IpLp~Vss~iLkkVIewce~h~~~~~~~~~i~ewdid~  148 (163)
                      |+|+. +|++|.+++.+ |..|+.+++|+...       ...|.+++|++.+++.+++|+..-+           -.++.
T Consensus        31 v~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~-------~~~i~~~~v~~~~f~~ll~~~Ytg~-----------i~l~~   91 (121)
T d1buoa_          31 VVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-------SQHYTLDFLSPKTFQQILEYAYTAT-----------LQAKA   91 (121)
T ss_dssp             EEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHHHSC-----------CCCCG
T ss_pred             EEEEE-CCEEEEEEHHHhcccChhhhhhccCc-------cceeecCCCCHHHHHHHHHheEccc-----------cCCcH
Confidence            66664 78899999998 68899999999743       3468899999999999999998521           24567


Q ss_pred             HHHHHHHHhhcccCC
Q psy17891        149 AIALELLMAANFLDC  163 (163)
Q Consensus       149 e~LfeLL~AAnyLd~  163 (163)
                      +.+.+|+.||++|++
T Consensus        92 ~~v~~ll~~A~~l~~  106 (121)
T d1buoa_          92 EDLDDLLYAAEILEI  106 (121)
T ss_dssp             GGHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            789999999999875

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00014  Score=45.71  Aligned_cols=18  Identities=39%  Similarity=0.709  Sum_probs=16.8

Q ss_pred             CCChHHHHHHHHhhcccC
Q psy17891        145 PIAPAIALELLMAANFLD  162 (163)
Q Consensus       145 did~e~LfeLL~AAnyLd  162 (163)
                      ++++..||+|+.|||||+
T Consensus         9 ~~d~~~Lf~Li~AAnyL~   26 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLD   26 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHT
T ss_pred             HcCHHHHHHHHHHHHHcC
Confidence            489999999999999997

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0043  Score=40.29  Aligned_cols=19  Identities=26%  Similarity=0.599  Sum_probs=17.2

Q ss_pred             CCChHHHHHHHHhhcccCC
Q psy17891        145 PIAPAIALELLMAANFLDC  163 (163)
Q Consensus       145 did~e~LfeLL~AAnyLd~  163 (163)
                      +++...||+|+.|||||+.
T Consensus        10 ~~d~~~L~~li~AAnyL~I   28 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNI   28 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTC
T ss_pred             hcCHHHHHHHHHHHHHcCc
Confidence            5789999999999999983