Psyllid ID: psy17939

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRCKTT
Secondary Structure (PSIPRED)
cHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
mapcvshhiekgdTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEivpkttpdgkllqdrcktt
Flexible Loop (DISEMBL)
mapcvshhiekgdtkiKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVpkttpdgkllqdrcktt
Low Complexity Region (SEG)
MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRCKTT
Disordered region (IsUnstruct)
***********GDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKT**************
Disordered Region (DISOPRED)
**PCVSH***********EALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP************
Disordered Region (DISEMBL)
MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRCKTT
Disordered Region (DISPRO)
MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP****LQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRCKTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q5ZIA5	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.75	7e-26
Q66HV4	953	Coatomer subunit beta OS=	yes	N/A	0.839	0.071	0.794	2e-25
P23514	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.736	6e-25
Q9JIF7	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.736	6e-25
Q5R922	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.736	6e-25
P53618	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.736	6e-25
A0JN39	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.736	7e-25
D2SW95	953	Coatomer subunit beta OS=	yes	N/A	0.888	0.075	0.736	8e-25
P45437	964	Coatomer subunit beta OS=	yes	N/A	0.839	0.070	0.720	3e-24
Q29G21	965	Coatomer subunit beta OS=	yes	N/A	0.839	0.070	0.75	5e-24

>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/72 (75%), Positives = 64/72 (88%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K+K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LLQ+
Sbjct: 86 PKTTPDGRLLQE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Gallus gallus (taxid: 9031)

>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/68 (79%), Positives = 61/68 (89%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKG+ K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIVPKTT
Sbjct: 30 LEKGEIKAKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTT 89

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 90 PDGKLLQE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Danio rerio (taxid: 7955)

>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins in the axonal compartment of dorsal root ganglion (DRG) cells. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Rattus norvegicus (taxid: 10116)

>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1 (By similarity). Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins in cortical neurons. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis.

Mus musculus (taxid: 10090)

>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Promotes degradation of Nef cellular targets CD4 and MHC class I antigens by facilitating their trafficking to degradative compartments.

Pongo abelii (taxid: 9601)

>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3

 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis (By similarity). Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1. Promotes degradation of Nef cellular targets CD4 and MHC class I antigens by facilitating their trafficking to degradative compartments.

Homo sapiens (taxid: 9606)

>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Involved in the Golgi disassembly and reassembly processes during cell cycle. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1.

Bos taurus (taxid: 9913)

>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1

 Score =  112 bits (280), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query: 65 PKTTPDGKLLQD 76
          PKTTPDG+LL +
Sbjct: 86 PKTTPDGRLLHE 97

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Plays a functional role in facilitating the transport of kappa-type opioid receptor mRNAs into axons and enhances translation of these proteins. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte surface triglyceride lipase (PNPLA2) with the lipid droplet to mediate lipolysis. Involved in the Golgi disassembly and reassembly processes during cell cycle. Involved in autophagy by playing a role in early endosome function. Plays a role in organellar compartmentalization of secretory compartments including endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), Golgi, trans-Golgi network (TGN) and recycling endosomes, and in biosynthetic transport of CAV1.

Sus scrofa (taxid: 9823)

>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2 SV=2

 Score =  110 bits (274), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/68 (72%), Positives = 61/68 (89%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGDT +KIE LK+VI+++ NGER PG++M IIRFVLP+Q+H IKKLLLIFWEIVPKT+
Sbjct: 28 LEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTS 87

Query: 69 PDGKLLQD 76
           DGKLLQ+
Sbjct: 88 ADGKLLQE 95

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets.

Drosophila melanogaster (taxid: 7227)

>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura GN=betaCop PE=3 SV=2

 Score =  109 bits (273), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/68 (75%), Positives = 60/68 (88%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGDT  KIE LKKVI+++ NGER PG++M IIRFVLP+QDH IKKLLLIFWEIVPKT+
Sbjct: 27 LEKGDTNHKIETLKKVIKLLLNGERYPGLIMTIIRFVLPVQDHTIKKLLLIFWEIVPKTS 86

Query: 69 PDGKLLQD 76
           DGKLLQ+
Sbjct: 87 GDGKLLQE 94

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
193692994	960	PREDICTED: coatomer subunit beta-like [A	0.839	0.070	0.882	4e-28
193706993	107	PREDICTED: coatomer subunit beta-like, p	0.839	0.635	0.882	1e-26
383856102	950	PREDICTED: coatomer subunit beta-like is	0.888	0.075	0.763	5e-26
383856100	958	PREDICTED: coatomer subunit beta-like is	0.888	0.075	0.763	5e-26
242005067	966	Coatomer subunit beta, putative [Pedicul	0.839	0.070	0.808	2e-25
289629218	573	coatomer protein complex subunit beta [B	0.839	0.118	0.808	6e-25
350413321	958	PREDICTED: coatomer subunit beta-like [B	0.839	0.070	0.794	7e-25
357614667	880	putative coatomer subunit beta [Danaus p	0.839	0.077	0.794	1e-24
449280860	966	Coatomer subunit beta [Columba livia]	0.839	0.070	0.794	2e-24
148223539	960	coatomer protein complex, subunit beta 1	0.839	0.070	0.808	2e-24

>gi|193692994|ref|XP_001949960.1| PREDICTED: coatomer subunit beta-like [Acyrthosiphon pisum]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/68 (88%), Positives = 65/68 (95%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGD+K KIEALKKVI MIANGERLPG+LMIIIRFVLP+QDH IKKLLLIFWEIVPKTT
Sbjct: 30 LEKGDSKTKIEALKKVIHMIANGERLPGLLMIIIRFVLPLQDHTIKKLLLIFWEIVPKTT 89

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 90 PDGKLLQE 97

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193706993|ref|XP_001950293.1| PREDICTED: coatomer subunit beta-like, partial [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 65/68 (95%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGD+K KIEALKKVI MIANGERLPG+LMIIIRFVLP+QDH IKKLLLIFWEIVPKTT
Sbjct: 30 LEKGDSKTKIEALKKVIHMIANGERLPGLLMIIIRFVLPLQDHTIKKLLLIFWEIVPKTT 89

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 90 PDGKLLQE 97

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856102|ref|XP_003703549.1| PREDICTED: coatomer subunit beta-like isoform 2 [Megachile rotundata]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/72 (76%), Positives = 64/72 (88%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + H +EKGD K KIEAL+K I MI +GERLPG+LM IIR+VLP+QDHMIKKLLLIFWEIV
Sbjct: 27 LKHDLEKGDVKTKIEALEKTIHMILSGERLPGLLMTIIRYVLPLQDHMIKKLLLIFWEIV 86

Query: 65 PKTTPDGKLLQD 76
          PKT+PDGKLLQ+
Sbjct: 87 PKTSPDGKLLQE 98

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856100|ref|XP_003703548.1| PREDICTED: coatomer subunit beta-like isoform 1 [Megachile rotundata]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/72 (76%), Positives = 64/72 (88%)

Query: 5  VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
          + H +EKGD K KIEAL+K I MI +GERLPG+LM IIR+VLP+QDHMIKKLLLIFWEIV
Sbjct: 27 LKHDLEKGDVKTKIEALEKTIHMILSGERLPGLLMTIIRYVLPLQDHMIKKLLLIFWEIV 86

Query: 65 PKTTPDGKLLQD 76
          PKT+PDGKLLQ+
Sbjct: 87 PKTSPDGKLLQE 98

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005067|ref|XP_002423396.1| Coatomer subunit beta, putative [Pediculus humanus corporis] gi|212506440|gb|EEB10658.1| Coatomer subunit beta, putative [Pediculus humanus corporis]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/68 (80%), Positives = 61/68 (89%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGD K KIEALKK I MI +GERLPGILM IIRFVLP+QDHM+KKLLLIFWEIVPKT 
Sbjct: 31 LEKGDVKTKIEALKKTIHMILSGERLPGILMTIIRFVLPLQDHMVKKLLLIFWEIVPKTN 90

Query: 69 PDGKLLQD 76
          PDGKL+Q+
Sbjct: 91 PDGKLMQE 98

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289629218|ref|NP_001166193.1| coatomer protein complex subunit beta [Bombyx mori] gi|284027822|gb|ADB66735.1| coatomer protein complex subunit beta [Bombyx mori]

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/68 (80%), Positives = 64/68 (94%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGDTK KIEALKK I +I +GE++PG+LMIIIRFVLP+QDHMIKKLLLIFWEIVPKT+
Sbjct: 30 LEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIVPKTS 89

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 90 PDGKLLQE 97

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413321|ref|XP_003489957.1| PREDICTED: coatomer subunit beta-like [Bombus impatiens]

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/68 (79%), Positives = 61/68 (89%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGD + KI+ALKK I MI NGERLPG+LM IIRFVLP+QDH IKKLLLIFWEIVPKT+
Sbjct: 31 LEKGDVQTKIDALKKTIHMILNGERLPGLLMTIIRFVLPLQDHTIKKLLLIFWEIVPKTS 90

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 91 PDGKLLQE 98

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614667|gb|EHJ69205.1| putative coatomer subunit beta [Danaus plexippus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/68 (79%), Positives = 62/68 (91%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGD K KIEALKK I +I +GE++PG+LMIIIRFVLP+QDH IKKLLLIFWEIVPKTT
Sbjct: 30 LEKGDIKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHTIKKLLLIFWEIVPKTT 89

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 90 PDGKLLQE 97

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449280860|gb|EMC88085.1| Coatomer subunit beta [Columba livia]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/68 (79%), Positives = 62/68 (91%)

Query: 9   IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
           +EKGD K+K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIVPKTT
Sbjct: 43  LEKGDVKLKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTT 102

Query: 69  PDGKLLQD 76
           PDG+LLQ+
Sbjct: 103 PDGRLLQE 110

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148223539|ref|NP_001085859.1| coatomer protein complex, subunit beta 1 [Xenopus laevis] gi|49118448|gb|AAH73438.1| MGC80934 protein [Xenopus laevis]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/68 (80%), Positives = 61/68 (89%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIVPKTT
Sbjct: 30 LEKGDAKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTT 89

Query: 69 PDGKLLQD 76
          PDGKLLQ+
Sbjct: 90 PDGKLLQE 97

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
UNIPROTKB|E9PKQ1	137	COPB1 "Coatomer subunit beta"	0.888	0.525	0.736	1.6e-24
UNIPROTKB|E9PP63	132	COPB1 "Coatomer subunit beta"	0.888	0.545	0.736	1.6e-24
UNIPROTKB|Q5ZIA5	953	COPB1 "Coatomer subunit beta"	0.888	0.075	0.75	2.9e-24
UNIPROTKB|E9PP73	486	COPB1 "Coatomer subunit beta"	0.888	0.148	0.736	5e-24
UNIPROTKB|F1S982	590	COPB1 "Coatomer subunit beta"	0.888	0.122	0.736	9.9e-24
ZFIN|ZDB-GENE-030219-38	953	copb1 "coatomer protein comple	0.839	0.071	0.794	1.3e-23
UNIPROTKB|A0JN39	953	COPB1 "Coatomer subunit beta"	0.888	0.075	0.736	2.7e-23
UNIPROTKB|E2R9A2	953	COPB1 "Coatomer subunit beta"	0.888	0.075	0.736	2.7e-23
UNIPROTKB|P53618	953	COPB1 "Coatomer subunit beta"	0.888	0.075	0.736	2.7e-23
UNIPROTKB|D2SW95	953	COPB1 "Coatomer subunit beta"	0.888	0.075	0.736	2.7e-23

UNIPROTKB|E9PKQ1 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|E9PP63 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|Q5ZIA5 COPB1 "Coatomer subunit beta" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 2.9e-24, P = 2.9e-24
 Identities = 54/72 (75%), Positives = 64/72 (88%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K+K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LLQ+
Sbjct:    86 PKTTPDGRLLQE 97

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E9PP73 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 5.0e-24, P = 5.0e-24
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|F1S982 COPB1 "Coatomer subunit beta" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 9.9e-24, P = 9.9e-24
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-030219-38 copb1 "coatomer protein complex, subunit beta 1" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 54/68 (79%), Positives = 61/68 (89%)

Query:     9 IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
             +EKG+ K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIVPKTT
Sbjct:    30 LEKGEIKAKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTT 89

Query:    69 PDGKLLQD 76
             PDGKLLQ+
Sbjct:    90 PDGKLLQE 97

GO:0030117 "membrane coat" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

UNIPROTKB|A0JN39 COPB1 "Coatomer subunit beta" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0005886 "plasma membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|E2R9A2 COPB1 "Coatomer subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53618 COPB1 "Coatomer subunit beta" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005798 "Golgi-associated vesicle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|D2SW95 COPB1 "Coatomer subunit beta" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     5 VSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIV 64
             + + +EKGD K K EALKKVI MI NGE+LPG+LM IIRFVLP+QDH IKKLLL+FWEIV
Sbjct:    26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85

Query:    65 PKTTPDGKLLQD 76
             PKTTPDG+LL +
Sbjct:    86 PKTTPDGRLLHE 97

GO:0005886 "plasma membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53618	COPB_HUMAN	No assigned EC number	0.7361	0.8888	0.0755	yes	N/A
D2SW95	COPB_PIG	No assigned EC number	0.7361	0.8888	0.0755	yes	N/A
Q5ZIA5	COPB_CHICK	No assigned EC number	0.75	0.8888	0.0755	yes	N/A
Q23924	COPB_DICDI	No assigned EC number	0.5573	0.7530	0.0668	yes	N/A
Q29G21	COPB_DROPS	No assigned EC number	0.75	0.8395	0.0704	yes	N/A
Q66HV4	COPB_DANRE	No assigned EC number	0.7941	0.8395	0.0713	yes	N/A
Q6FM46	COPB_CANGA	No assigned EC number	0.5076	0.8024	0.0668	yes	N/A
P45437	COPB_DROME	No assigned EC number	0.7205	0.8395	0.0705	yes	N/A
Q9JIF7	COPB_MOUSE	No assigned EC number	0.7361	0.8888	0.0755	yes	N/A
Q5R922	COPB_PONAB	No assigned EC number	0.7361	0.8888	0.0755	yes	N/A
A0JN39	COPB_BOVIN	No assigned EC number	0.7361	0.8888	0.0755	yes	N/A
P23514	COPB_RAT	No assigned EC number	0.7361	0.8888	0.0755	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
COG5096	757	COG5096, COG5096, Vesicle coat complex, various su	2e-08
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	5e-08

>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 9  IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTT 68
          +E  +   KI+A+KK+I  ++ GE +  +   +I+ V   +D  +K+LL ++ E   K  
Sbjct: 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLK 86

Query: 69 PDGKLL 74
          P+  LL
Sbjct: 87 PELALL 92

Length = 757

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 47.6 bits (114), Expect = 5e-08
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 11 KGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPD 70
          + D + K EA+KK+I +I  GE +  +   +++ V    D  +K+L  ++ +++ + +PD
Sbjct: 16 RDDPRKKKEAVKKLIYLIMLGEDISFLFFEVVKLVA-SNDFTLKRLGYLYLKLLAEESPD 74

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG1058|consensus	948		99.97
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.76
KOG1060|consensus	968		99.68
PTZ00429	746	beta-adaptin; Provisional	99.58
KOG1061|consensus	734		99.26
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.21

>KOG1058|consensus

Probab=99.97  E-value=1e-32  Score=228.89  Aligned_cols=79  Identities=52%  Similarity=0.913  Sum_probs=77.4

Q ss_pred             hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCCCCcccceeecC
Q psy17939          3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRCKTT   81 (81)
Q Consensus         3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~EmiL~~   81 (81)
                      .||++.||+|+++.|+||||++|.+|+||+++|+|+|+|||||+||+||+||||+|+|||++||+++||+++|||||+.
T Consensus        23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvc  101 (948)
T KOG1058|consen   23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVC  101 (948)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999999973

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.76  E-value=3.7e-19  Score=148.06  Aligned_cols=70  Identities=27%  Similarity=0.410  Sum_probs=65.4

Q ss_pred             HHHhh-hhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCCCCcccceee
Q psy17939          4 CVSHH-IEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQDRCK   79 (81)
Q Consensus         4 elk~~-Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~EmiL   79 (81)
                      .++.. |+|+++..|++|||++|+.|..|+|+|.|||+||||++ |.|.|+|||+|+||++||+++|     +||||
T Consensus        22 ~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P-----~~~lL   92 (757)
T COG5096          22 ALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP-----ELALL   92 (757)
T ss_pred             hhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH-----HHHHH
Confidence            44555 89999999999999999999999999999999999999 9999999999999999999999     57776

>KOG1060|consensus

Probab=99.68  E-value=3.9e-17  Score=137.00  Aligned_cols=72  Identities=22%  Similarity=0.422  Sum_probs=69.2

Q ss_pred             hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCCCCccc
Q psy17939          3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQ   75 (81)
Q Consensus         3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~   75 (81)
                      ++|+..|+|+++..|+||||+||++|.+|++++.+|++|||||+ |+|.|+|||+|+|+..|+--+||-.|+.
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAEeqpdLALLS  109 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVA-SKNIEVKKLVYVYLLRYAEEQPDLALLS  109 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcCCCceeee
Confidence            48999999999999999999999999999999999999999999 9999999999999999999999988763

>PTZ00429 beta-adaptin; Provisional

Probab=99.58  E-value=2.7e-15  Score=124.79  Aligned_cols=67  Identities=18%  Similarity=0.363  Sum_probs=63.0

Q ss_pred             hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCC
Q psy17939          3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPD   70 (81)
Q Consensus         3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~d   70 (81)
                      +|||+.|+++++++|++|||++|++|+.|+|++.+||+||+ +++|+|+++|||+|+||.++.+.+||
T Consensus        35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk-~~~S~d~elKKLvYLYL~~ya~~~pe  101 (746)
T PTZ00429         35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVK-LAPSTDLELKKLVYLYVLSTARLQPE  101 (746)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccChH
Confidence            68999999999999999999999999999999999999999 56699999999999999999777664

>KOG1061|consensus

Probab=99.26  E-value=3.6e-12  Score=106.28  Aligned_cols=70  Identities=20%  Similarity=0.395  Sum_probs=65.0

Q ss_pred             hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCCCCc
Q psy17939          3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPDGKL   73 (81)
Q Consensus         3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~dGkL   73 (81)
                      .|+|..|.|...+.+++|.|++|+.|.-|.|+|++|++||+ ++.+.|.++|||+|+|+.+|.+..||+.+
T Consensus        16 ~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk-~~~T~dlelKKlvyLYl~nYa~~~P~~a~   85 (734)
T KOG1061|consen   16 PELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVK-CMQTRDLELKKLVYLYLMNYAKGKPDLAI   85 (734)
T ss_pred             hHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHh-hcccCCchHHHHHHHHHHHhhccCchHHH
Confidence            47889998888899999999999999999999999999998 67799999999999999999999999765

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.21  E-value=1.4e-11  Score=94.38  Aligned_cols=68  Identities=22%  Similarity=0.348  Sum_probs=60.9

Q ss_pred             hhHHHhhhhcC--ChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCC
Q psy17939          2 APCVSHHIEKG--DTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPD   70 (81)
Q Consensus         2 ~~elk~~Les~--~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~d   70 (81)
                      .+|+++.+++.  +.+.|++||+++|.++..|.+++.+|++||+++. |+|+++||+.|+||+.+...++|
T Consensus         6 ~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~   75 (526)
T PF01602_consen    6 SQELAKILNSFKIDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPE   75 (526)
T ss_dssp             HHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchh
Confidence            36899999999  9999999999999999999999999999999777 99999999999999999888775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	9e-11
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	1e-06

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 54.8 bits (132), Expect = 9e-11
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 10 EKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP 69
               + + EA+KKVI  +  G+ +  +   ++   +   +  +KKL+ ++     K+ P
Sbjct: 23 NNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQP 81

Query: 70 D 70
          D
Sbjct: 82 D 82

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 13  DTKIKIEALKKVIQMIANGERLPGILMIIIRF----VLPMQDHMIKKLLLIFWEIVPKTT 68
           + +     L K++ +I  GE L         F    +    D  ++++  +  + +    
Sbjct: 40  NPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA 99

Query: 69  PD 70
            D
Sbjct: 100 ED 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.36
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.24
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.24
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.18
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	89.45

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.36  E-value=6.4e-13  Score=101.19  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             hHHHhhh-hcCChHHHH-HHHHHHHHHHHcCCCCCcchHHHHHh----hccCCChhhHHHHHHHHHhccCCCCCCCcccc
Q psy17939          3 PCVSHHI-EKGDTKIKI-EALKKVIQMIANGERLPGILMIIIRF----VLPMQDHMIKKLLLIFWEIVPKTTPDGKLLQD   76 (81)
Q Consensus         3 ~elk~~L-es~~~~~K~-ealKkiI~~~~~G~~~~~L~m~VIr~----v~ps~n~~lKKLl~lY~e~~~k~~~dGkL~~E   76 (81)
                      +|.| .+ +++.+..|+ ++|+|+|.+|.+|+++++..++.+.|    ++||+|+++|||+|+||+.+++.      .+|
T Consensus        29 qe~r-~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~------~~e  101 (355)
T 3tjz_B           29 QEAR-VFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI------AED  101 (355)
T ss_dssp             HHGG-GTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT------SSC
T ss_pred             HHHH-HhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC------HHH
Confidence            4533 44 444565665 49999999999999987555544444    89999999999999999999987      468


Q ss_pred             eeecC
Q psy17939         77 RCKTT   81 (81)
Q Consensus        77 miL~~   81 (81)
                      +||+|
T Consensus       102 ~iLv~  106 (355)
T 3tjz_B          102 VIIVT  106 (355)
T ss_dssp             GGGGH
T ss_pred             HHHHH
Confidence            88874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.24  E-value=1.1e-11  Score=97.97  Aligned_cols=67  Identities=12%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             hHHHhhhhc---CChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCCC
Q psy17939          3 PCVSHHIEK---GDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTPD   70 (81)
Q Consensus         3 ~elk~~Les---~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~d   70 (81)
                      +|||+.|++   .+...|.++++|+|.++..|++++.+|++||+ +++|+|+++||++|+||..+.+.++|
T Consensus        38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~e  107 (621)
T 2vgl_A           38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNSE  107 (621)
T ss_dssp             HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCcH
Confidence            589999985   47889999999999999999999999999999 77799999999999999999887753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.24  E-value=6.4e-12  Score=97.54  Aligned_cols=67  Identities=18%  Similarity=0.324  Sum_probs=62.1

Q ss_pred             hhHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCC
Q psy17939          2 APCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP   69 (81)
Q Consensus         2 ~~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~   69 (81)
                      .+|||+.|++++++.|.+|++|+|.+++.|++++.+|++|++ +++|+|.++||+.|+||..+.+.++
T Consensus        15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~~~   81 (591)
T 2vgl_B           15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQP   81 (591)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccCc
Confidence            368999999999999999999999999999999999999998 7789999999999999999866543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.18  E-value=2.1e-11  Score=95.56  Aligned_cols=66  Identities=9%  Similarity=0.058  Sum_probs=61.6

Q ss_pred             hHHHhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhccCCChhhHHHHHHHHHhccCCCC
Q psy17939          3 PCVSHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLPMQDHMIKKLLLIFWEIVPKTTP   69 (81)
Q Consensus         3 ~elk~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~ps~n~~lKKLl~lY~e~~~k~~~   69 (81)
                      +|||+.|++++...|+++++|+|.++..|++++.+||+|||++. |+|+++||++|+|...+...++
T Consensus        37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~  102 (618)
T 1w63_A           37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQ  102 (618)
T ss_dssp             HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCc
Confidence            58999999999999999999999999999999999999999877 9999999999999999876553

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=89.45  E-value=1.4  Score=31.88  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHcCCCCCcchHHHHHhhcc---CCChhhHHHHHHHH-Hhc
Q psy17939          6 SHHIEKGDTKIKIEALKKVIQMIANGERLPGILMIIIRFVLP---MQDHMIKKLLLIFW-EIV   64 (81)
Q Consensus         6 k~~Les~~~~~K~ealKkiI~~~~~G~~~~~L~m~VIr~v~p---s~n~~lKKLl~lY~-e~~   64 (81)
                      -+.-...++++|++.|+++=..+.+++  |++++.++..++|   ..+.+++|.+-=|+ |.|
T Consensus        21 ln~A~~~~~~~kl~~L~qa~el~~~~d--p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~   81 (257)
T 3gs3_A           21 CNELVIASPSTKCELLAKVQETVLGSC--AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC   81 (257)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHTTTT--GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcCcHHHHHHHHHHHHHHHccC--HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            333444345799999999999999886  4566666666655   78899999887777 444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-09

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.52
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.13