Psyllid ID: psy18011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL
Secondary Structure (PSIPRED)
cccccHHHHcccEEcccEEEEEccEEcccccHHHHHHHHHccccEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEcccccccccccEEEcccccHHHHHHHHcccccEEEEEEEEcccccEEEEEEEccccccccEEEEEEEcccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccEEEEEEEcccccccccHHHHHHHHHHccccEEEEEEEccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEccccccHHHHHHHHHccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEEcccccccccEEEEc
Coil and Loop (DISEMBL)
vqdnspgqkagLEAFFDFIVAIDnirldqdnDTLKELLKNGIDKELKMAVYssktqdvrtvnitpsnswggqglLGVSIRFCSfeganenvWHILDQDNDTLKELLKNGIDKELKMAVYssktqdvrtvnitpsnswggqglLGVSIRFCSFEGANENVWHIL
Flexible Loop (DISEMBL)
vqdnspgqkaGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNItpsnswggqGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNItpsnswggqGLLGVSIRFCSFEGANENVWHIL
Low Complexity Region (SEG)
VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL
Disordered region (IsUnstruct)
***********LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHI*
Disordered Region (DISOPRED)
*QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL
Disordered Region (DISEMBL)
********KAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL
Disordered Region (DISPRO)
****SPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9H8Y8	452	Golgi reassembly-stacking	yes	N/A	0.914	0.329	0.491	2e-44
Q99JX3	451	Golgi reassembly-stacking	yes	N/A	0.914	0.330	0.491	2e-44
Q9R064	454	Golgi reassembly-stacking	yes	N/A	0.914	0.328	0.491	3e-44
Q9BQQ3	440	Golgi reassembly-stacking	no	N/A	0.914	0.338	0.44	4e-39
Q91X51	446	Golgi reassembly-stacking	no	N/A	0.914	0.334	0.434	8e-39
O35254	451	Golgi reassembly-stacking	no	N/A	0.914	0.330	0.434	8e-39
Q10149	345	Uncharacterized protein C	yes	N/A	0.871	0.411	0.247	4e-11

>sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly-stacking protein 2 OS=Homo sapiens GN=GORASP2 PE=1 SV=3

 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct: 22  VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
            ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++                   
Sbjct: 82  TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 141

Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
                  L  L++    K LK+ VY++ T + R V ITP+++WGG+G LG  I +
Sbjct: 142 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 196

Plays a role in the assembly and membrane stacking of the Golgi cisternae, and in the process by which Golgi stacks reform after mitotic breakdown. May regulate the intracellular transport and presentation of a defined set of transmembrane proteins, such as transmembrane TGFA.
Homo sapiens (taxid: 9606)

>sp|Q99JX3|GORS2_MOUSE Golgi reassembly-stacking protein 2 OS=Mus musculus GN=Gorasp2 PE=1 SV=3

 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct: 22  VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
            ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++                   
Sbjct: 82  ASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 141

Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
                  L  L++    K LK+ VY++ T + R V ITP+++WGG+G LG  I +
Sbjct: 142 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 196

Plays a role in assembly and membrane stacking of the Golgi cisternae, and in the process by which Golgi stacks reform after mitotic breakdown. May regulate the intracellular transport and presentation of a defined set of transmembrane proteins, such as transmembrane TGFA.

Mus musculus (taxid: 10090)

>sp|Q9R064|GORS2_RAT Golgi reassembly-stacking protein 2 OS=Rattus norvegicus GN=Gorasp2 PE=1 SV=3

 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG +AGLE FFDFIV+I   RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct: 22  VQENSPGHRAGLEPFFDFIVSISGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
            ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++                   
Sbjct: 82  ASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 141

Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
                  L  L++    K LK+ VY++ T + R V ITP+++WGG+G LG  I +
Sbjct: 142 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 196

Plays a role in assembly and membrane stacking of the Golgi cisternae, and in the process by which Golgi stacks reform after mitotic breakdown. May regulate the intracellular transport and presentation of a defined set of transmembrane proteins, such as transmembrane Tgfa.

Rattus norvegicus (taxid: 10116)

>sp|Q9BQQ3|GORS1_HUMAN Golgi reassembly-stacking protein 1 OS=Homo sapiens GN=GORASP1 PE=1 SV=3

 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSP Q+AGLE +FDFI+ I + RL+++NDTLK LLK  ++K +K+ V++ KT  VR 
Sbjct: 22  VQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLKANVEKPVKLEVFNMKTMRVRE 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V + PSN WGGQGLLG S+RFCSF  A+E VWH+LD                        
Sbjct: 82  VEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEPSSPAALAGLRPYTDYVVGSDQ 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
             Q+++    L+++   K LK+ VY+SK+   R V +TP+ +WGG+G LG  I +
Sbjct: 142 ILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTPNAAWGGEGSLGCGIGY 196

Stacking factor involved in the postmitotic assembly of Golgi stacks from mitotic Golgi fragments. Key structural protein required for the maintenance of the Golgi apparatus integrity: its caspase-mediated cleavage is required for fragmentation of the Golgi during apoptosis. Also mediates, via its interaction with GM130, the docking of transport vesicles with the Golgi membranes.

Homo sapiens (taxid: 9606)

>sp|Q91X51|GORS1_MOUSE Golgi reassembly-stacking protein 1 OS=Mus musculus GN=Gorasp1 PE=2 SV=3

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSP Q+AGLE +FDFI+ I + RL+++NDTLK LLK  ++K +K+ V++ KT  VR 
Sbjct: 21  VQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLKANVEKPVKLEVFNMKTMKVRE 80

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V + PSN WGGQGLLG S+RFCSF  A+E+VWH+LD                        
Sbjct: 81  VEVVPSNMWGGQGLLGASVRFCSFRRASEHVWHVLDVEPSSPAALAGLCPYTDYIVGSDQ 140

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
             Q+++    L+++   K LK+ VY+S++   R V +TP+ +WGG+G LG  I +
Sbjct: 141 ILQESEDFFTLIESHEGKPLKLMVYNSESDSCREVTVTPNAAWGGEGSLGCGIGY 195

Stacking factor involved in the postmitotic assembly of Golgi stacks from mitotic Golgi fragments. Key structural protein required for the maintenance of the Golgi apparatus integrity: its caspase-mediated cleavage is required for fragmentation of the Golgi during apoptosis. Also mediates, via its interaction with GM130, the docking of transport vesicles with the Golgi membranes.

Mus musculus (taxid: 10090)

>sp|O35254|GORS1_RAT Golgi reassembly-stacking protein 1 OS=Rattus norvegicus GN=Gorasp1 PE=1 SV=4

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSP Q+AGLE +FDFI+ I + RL+++NDTLK LLK  ++K +K+ V++ KT  VR 
Sbjct: 21  VQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLKANVEKPVKLEVFNMKTMRVRE 80

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V + PSN WGGQGLLG S+RFCSF  A+E+VWH+LD                        
Sbjct: 81  VEVVPSNMWGGQGLLGASVRFCSFRRASEHVWHVLDVEPSSPAALAGLRPYTDYIVGSDQ 140

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
             Q+++    L+++   K LK+ VY+S++   R V +TP+ +WGG+G LG  I +
Sbjct: 141 ILQESEDFFTLIESHEGKPLKLMVYNSESDSCREVTVTPNAAWGGEGSLGCGIGY 195

Stacking factor involved in the postmitotic assembly of Golgi stacks from mitotic Golgi fragments. Key structural protein required for the maintenance of the Golgi apparatus integrity: its caspase-mediated cleavage is required for fragmentation of the Golgi during apoptosis. Also mediates, via its interaction with GM130, the docking of transport vesicles with the Golgi membranes.

Rattus norvegicus (taxid: 10116)

>sp|Q10149|YAT2_SCHPO Uncharacterized protein C1D4.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1D4.02c PE=4 SV=2

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 32/174 (18%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           V+++S    A +E+++DFI A++ I L+ D      LL++    E+ + V+S K Q  R 
Sbjct: 34  VENDSKAYNARIESYYDFITAVNGILLNGDPSMFMALLRDS-SPEVTLEVFSLKGQITRK 92

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
           VNI           +G+ +++ S   A + +WHIL+  +D+                   
Sbjct: 93  VNI----KINSDEKIGMVLQWASIAPAVDAIWHILNVIDDSPVARASLVPYEDYIVGTPE 148

Query: 102 --------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI 147
                   L +L+++ +++ L++ +Y+      R V I P+  WGG G +G  +
Sbjct: 149 GMMTGEKALSDLIESHLNRPLRLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGV 202

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
332018043	444	Golgi reassembly-stacking protein 2 [Acr	0.914	0.335	0.591	1e-49
158285765	575	AGAP007381-PA [Anopheles gambiae str. PE	0.914	0.259	0.554	5e-49
157117495	548	golgi reassembly stacking protein 2 (gra	0.914	0.271	0.56	5e-49
170063483	494	golgi reassembly-stacking protein 2 [Cul	0.914	0.301	0.56	7e-49
312384820	532	hypothetical protein AND_01490 [Anophele	0.914	0.280	0.554	1e-48
242008701	438	golgi reassembly-stacking protein, putat	0.914	0.340	0.548	6e-48
307190210	473	Golgi reassembly-stacking protein 2 [Cam	0.914	0.315	0.548	7e-48
194751923	494	GF23605 [Drosophila ananassae] gi|190625	0.914	0.301	0.554	8e-48
405971632	443	Golgi reassembly-stacking protein 2 [Cra	0.914	0.336	0.548	8e-48
291234712	443	PREDICTED: predicted protein-like [Sacco	0.914	0.336	0.537	2e-47

>gi|332018043|gb|EGI58668.1| Golgi reassembly-stacking protein 2 [Acromyrmex echinatior]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 118/164 (71%), Gaps = 15/164 (9%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+ SPGQ+AGLEAFFDFIVAI N RLDQDNDTLKELLK G++KEL + VYSSKTQ VR 
Sbjct: 22  VQEGSPGQQAGLEAFFDFIVAIGNTRLDQDNDTLKELLKVGVNKELTITVYSSKTQSVRR 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD---------------QDNDTLKEL 105
            NI PS +WGGQGLLGVSIRFCSFEGANENVWH+L+                +++ L  L
Sbjct: 82  TNIVPSMTWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPDIIGADSILHESEDLFTL 141

Query: 106 LKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
           ++    + LK+ VY++K    R V ITP+N+WGG+G LG  I +
Sbjct: 142 IEAHESRPLKLYVYNTKNDSCREVTITPNNTWGGEGSLGCGIGY 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285765|ref|XP_308450.4| AGAP007381-PA [Anopheles gambiae str. PEST] gi|157020150|gb|EAA04452.4| AGAP007381-PA [Anopheles gambiae str. PEST]

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/175 (55%), Positives = 121/175 (69%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQDNSPG+ AGLEAFFDFI+AI N RLDQDNDTLKELLK  ID+E++M VYSSKTQ++R 
Sbjct: 22  VQDNSPGKTAGLEAFFDFILAIGNTRLDQDNDTLKELLKANIDREIQMTVYSSKTQNIRL 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V+ITPS++WGGQGLLGVSIRFCSFEGANENVWHIL+                        
Sbjct: 82  VDITPSSTWGGQGLLGVSIRFCSFEGANENVWHILEVHPSSPAEEAGLIPFTDYIIGADS 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L+++   + LKM VY++     R V ITP++ WGG+G LG  I +
Sbjct: 142 ILHESEDLFTLIESHEGRPLKMYVYNTDLDRCREVTITPNSKWGGEGSLGCGIGY 196

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117495|ref|XP_001658795.1| golgi reassembly stacking protein 2 (grasp2) [Aedes aegypti] gi|108876034|gb|EAT40259.1| AAEL008000-PA [Aedes aegypti]

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 98/175 (56%), Positives = 119/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQD+SPGQKAGLEAFFDFI+AI N RLDQDNDTLKELLK  IDKE++M V+SSKTQ++R 
Sbjct: 22  VQDHSPGQKAGLEAFFDFILAIGNTRLDQDNDTLKELLKANIDKEIQMTVFSSKTQNIRV 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           VNI PS +WGGQGLLGVSIRFCSFEGANENVWHIL+                        
Sbjct: 82  VNIMPSTTWGGQGLLGVSIRFCSFEGANENVWHILEVHPSSPAEEAGLIPFTDYIIGADS 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L+++   + LKM VY+      R V ITP++ WGG+G LG  I +
Sbjct: 142 ILHESEDLFTLIESHKGRPLKMYVYNIDRDACREVTITPNDKWGGEGSLGCGIGY 196

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063483|ref|XP_001867123.1| golgi reassembly-stacking protein 2 [Culex quinquefasciatus] gi|167881097|gb|EDS44480.1| golgi reassembly-stacking protein 2 [Culex quinquefasciatus]

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 98/175 (56%), Positives = 119/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQDNSPGQKAGLEAFFDFI+AI N RLDQDNDTLKELLK  IDKE++M V+SSKTQ++R 
Sbjct: 22  VQDNSPGQKAGLEAFFDFILAIGNTRLDQDNDTLKELLKANIDKEIQMTVFSSKTQNIRV 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           VNI+PS +WGGQGLLGVSIRFCSFEGANENVWHIL+                        
Sbjct: 82  VNISPSTTWGGQGLLGVSIRFCSFEGANENVWHILEVHPSSPAEEAGLIPFTDYIIGADS 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L+++   + LKM VY+      R V IT ++ WGG+G LG  I +
Sbjct: 142 ILHESEDLFTLIESHEGRPLKMYVYNIDLDSCREVTITANSKWGGEGSLGCGIGY 196

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384820|gb|EFR29453.1| hypothetical protein AND_01490 [Anopheles darlingi]

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQDNSPG+ AGLEAFFDFI+AI N RLDQDNDTLKELLK  IDKE++M VYSSKTQ++R 
Sbjct: 2   VQDNSPGKTAGLEAFFDFILAIGNTRLDQDNDTLKELLKANIDKEIQMTVYSSKTQNIRL 61

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V+I PS++WGGQGLLGVSIRFCSFEGANENVWHIL+                        
Sbjct: 62  VDIVPSSTWGGQGLLGVSIRFCSFEGANENVWHILEIHPSSPAEEAGLIPFTDYIIGADS 121

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L+++   + LKM VY++     R V ITP++ WGG+G LG  I +
Sbjct: 122 ILHESEDLFTLIESHEGRPLKMYVYNTDLDRCREVTITPNSKWGGEGSLGCGIGY 176

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008701|ref|XP_002425140.1| golgi reassembly-stacking protein, putative [Pediculus humanus corporis] gi|212508821|gb|EEB12402.1| golgi reassembly-stacking protein, putative [Pediculus humanus corporis]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+ SPG KAGLEAFFDFI+ I   RLDQDNDTLKELLK G+ +ELKM VYSSKTQ+VRT
Sbjct: 22  VQEGSPGHKAGLEAFFDFIITIGTTRLDQDNDTLKELLKAGVGQELKMTVYSSKTQNVRT 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V+ITPS+SWGGQGLLGVSIRFCSFEGANENVWH+L+                        
Sbjct: 82  VSITPSSSWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAEAAGLKPFEDYIIGADS 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L++   ++ LK+ VY++     R V ITP ++WGG+G LG  I +
Sbjct: 142 ILHESEDLFSLIEAYENRALKLYVYNTGNDTCREVTITPMSNWGGEGSLGCGIGY 196

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190210|gb|EFN74325.1| Golgi reassembly-stacking protein 2 [Camponotus floridanus]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 117/175 (66%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+ SPGQ+AGLEAFFDFIVAI N RLDQDNDTLKELLK G++KEL + VYSSKTQ VR 
Sbjct: 22  VQEGSPGQQAGLEAFFDFIVAIGNTRLDQDNDTLKELLKAGVNKELTITVYSSKTQSVRR 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
             I PS +WGGQGLLGVSIRFCSFEGANENVWH+L+                        
Sbjct: 82  TKIVPSMTWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLQPFTDYIIGADS 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L++    + LK+ VY++K    R V ITP+N+WGG+G LG  I +
Sbjct: 142 ILHESEDLFTLIEAHESRSLKLYVYNTKDDSCREVTITPNNTWGGEGSLGCGIGY 196

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751923|ref|XP_001958273.1| GF23605 [Drosophila ananassae] gi|190625555|gb|EDV41079.1| GF23605 [Drosophila ananassae]

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 97/175 (55%), Positives = 114/175 (65%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQDNSPGQKAGLEAFFDFIVAI   RLDQDND LKELL+  +DK +++ VYSSKTQ VR 
Sbjct: 22  VQDNSPGQKAGLEAFFDFIVAIAGTRLDQDNDMLKELLRQNVDKPVRLTVYSSKTQTVRE 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           + +TPSNSWGGQGLLGVSIRFCSFEGANE+VWHIL+                        
Sbjct: 82  LTLTPSNSWGGQGLLGVSIRFCSFEGANESVWHILEVHPNSPAELAGLRAYSDYVIGADA 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +ND L  L++    + LKM VY+      R V I P+ +WGG+G LG  I F
Sbjct: 142 IRHENDDLFTLIETHEQQPLKMYVYNLDDDACREVTIKPNTAWGGEGALGCGIGF 196

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405971632|gb|EKC36458.1| Golgi reassembly-stacking protein 2 [Crassostrea gigas]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQD SPG +AGLEAFFDFIVAI N RL+QDNDTLK+LLK  I+K +KMAVYSSKTQ VR 
Sbjct: 23  VQDGSPGHRAGLEAFFDFIVAIGNTRLNQDNDTLKDLLKANIEKPVKMAVYSSKTQTVRE 82

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V I PS++WGGQGLLGVSIRFCSFEGANENVWH+L+                        
Sbjct: 83  VTIIPSHNWGGQGLLGVSIRFCSFEGANENVWHVLELQPNSPADLAGLKSETDYIIGADS 142

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L++N   K L++ VY+++T   R V ITP+ +WGG+G LG  I +
Sbjct: 143 VLHESEDLFTLIENHEGKPLRLYVYNTETDSCREVTITPNGAWGGEGSLGCGIGY 197

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|291234712|ref|XP_002737291.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 121/175 (69%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG KAGLEAFFDFIVA+ N RLD+DNDTLKE+LK+ I+K ++M VYSSK+   R 
Sbjct: 22  VQENSPGHKAGLEAFFDFIVAVGNTRLDKDNDTLKEILKSNIEKPVRMLVYSSKSLQTRE 81

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
           V++TPSNSWGGQGLLGVSIRFCSFEGANENVWH+LD                        
Sbjct: 82  VSLTPSNSWGGQGLLGVSIRFCSFEGANENVWHVLDCQTNSPADYAGLRSNTDYIIGADS 141

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L+++   + LK+ VY+ +T  VR V +TP+++WGGQG LG  I +
Sbjct: 142 VLHESEDLFSLIESHEGRPLKLYVYNIETDGVREVTLTPNSNWGGQGSLGCGIGY 196

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
FB|FBgn0036919	460	Grasp65 "Grasp65" [Drosophila	0.644	0.228	0.733	1.4e-46
UNIPROTKB|F1MSB5	455	GORASP2 "Uncharacterized prote	0.619	0.221	0.653	5.9e-44
UNIPROTKB|E2RHJ7	459	GORASP2 "Uncharacterized prote	0.619	0.220	0.653	5.9e-44
UNIPROTKB|F1S1U5	452	GORASP2 "Uncharacterized prote	0.619	0.223	0.653	5.9e-44
UNIPROTKB|B4DKT0	464	GORASP2 "Uncharacterized prote	0.619	0.217	0.653	7.6e-44
UNIPROTKB|Q9H8Y8	452	GORASP2 "Golgi reassembly-stac	0.619	0.223	0.653	7.6e-44
MGI|MGI:2135962	451	Gorasp2 "golgi reassembly stac	0.619	0.223	0.653	7.6e-44
RGD|619911	454	Gorasp2 "golgi reassembly stac	0.619	0.222	0.653	9.6e-44
UNIPROTKB|F1P2L9	442	GORASP2 "Uncharacterized prote	0.588	0.217	0.697	1.2e-43
ZFIN|ZDB-GENE-030826-23	461	gorasp1 "golgi reassembly stac	0.619	0.219	0.594	4.1e-41

FB|FBgn0036919 Grasp65 "Grasp65" [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
 Identities = 77/105 (73%), Positives = 89/105 (84%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQDNSPGQKAGLEAFFDFIVAI   RLDQDND LKELL+  +DK +++ VYSSKTQ VR 
Sbjct:    22 VQDNSPGQKAGLEAFFDFIVAIAGTRLDQDNDMLKELLRQNVDKPVRLTVYSSKTQTVRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKEL 105
             + +TPSN+WGGQGLLGVSIRFCSFEGANE+VWHIL+   ++  EL
Sbjct:    82 LTLTPSNNWGGQGLLGVSIRFCSFEGANESVWHILEVHPNSPAEL 126

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007472 "wing disc morphogenesis" evidence=IMP

UNIPROTKB|F1MSB5 GORASP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 377 (137.8 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 66/101 (65%), Positives = 88/101 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    82 TSVTPSNMWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 122

GO:0006996 "organelle organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E2RHJ7 GORASP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 66/101 (65%), Positives = 88/101 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    82 TSVTPSNMWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 122

GO:0006996 "organelle organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1S1U5 GORASP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 377 (137.8 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 66/101 (65%), Positives = 88/101 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    82 TSVTPSNMWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 122

GO:0006996 "organelle organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|B4DKT0 GORASP2 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 376 (137.4 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 66/101 (65%), Positives = 88/101 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    34 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 93

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    94 TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 134

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q9H8Y8 GORASP2 "Golgi reassembly-stacking protein 2" [Homo sapiens (taxid:9606)]

 Score = 376 (137.4 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 66/101 (65%), Positives = 88/101 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    82 TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 122

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006996 "organelle organization" evidence=IMP

GO:0016020 "membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

MGI|MGI:2135962 Gorasp2 "golgi reassembly stacking protein 2" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 66/101 (65%), Positives = 88/101 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    82 ASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 122

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005797 "Golgi medial cisterna" evidence=ISO

GO:0006996 "organelle organization" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0016020 "membrane" evidence=IEA

RGD|619911 Gorasp2 "golgi reassembly stacking protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 66/101 (65%), Positives = 87/101 (86%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I   RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSISGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct:    82 ASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 122

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005797 "Golgi medial cisterna" evidence=IDA

GO:0006996 "organelle organization" evidence=ISO;ISS

GO:0007030 "Golgi organization" evidence=IDA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

UNIPROTKB|F1P2L9 GORASP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 375 (137.1 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 67/96 (69%), Positives = 84/96 (87%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM VYSSKT ++R 
Sbjct:    22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLVYSSKTLELRE 81

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD 96
              ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+
Sbjct:    82 TSVTPSNMWGGQGLLGVSIRFCSFDGANENVWHVLE 117

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006996 "organelle organization" evidence=IEA

ZFIN|ZDB-GENE-030826-23 gorasp1 "golgi reassembly stacking protein 1" [Danio rerio (taxid:7955)]

 Score = 349 (127.9 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 60/101 (59%), Positives = 84/101 (83%)

Query:     1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
             VQ++SP ++AGLE FFDFI++I + RL+Q+ND LK+LLK  ++K +KM VYS+KT  +R 
Sbjct:    23 VQEDSPAERAGLEPFFDFIISIGHNRLNQENDMLKDLLKANVEKPVKMEVYSTKTMRMRE 82

Query:    61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT 101
             + + PSN WGGQGLLG S+RFCSF+GANENVWH+LD ++++
Sbjct:    83 LEVVPSNMWGGQGLLGASVRFCSFQGANENVWHVLDVESNS 123

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
pfam04495	136	pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain	5e-37
pfam04495	136	pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain	6e-23
pfam04495	136	pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain	8e-18
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	3e-05
COG3975	558	COG3975, COG3975, Predicted protease with the C-te	0.003
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	0.003

>gnl|CDD|203029 pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain

 Score =  123 bits (311), Expect = 5e-37
 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 27/125 (21%)

Query: 50  VYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------- 96
           VYS+K+Q +R V+I PS++WGGQGLLG+S+R+CSF GANENVWH+LD             
Sbjct: 1   VYSAKSQKIREVSIVPSSTWGGQGLLGLSLRWCSFSGANENVWHVLDVHPNSPAALAGLQ 60

Query: 97  --------------QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGL 142
                         +  D L EL+++   + LK+ VY+S+T  VR V ITP+  WGG+G 
Sbjct: 61  PYSDYIIGTDSGLLRGEDDLFELVESHEGRPLKLYVYNSETDVVREVTITPNRGWGGEGA 120

Query: 143 LGVSI 147
           LG  I
Sbjct: 121 LGCGI 125

GRASP55 (Golgi re-assembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide- sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system. This region appears to be related to the PDZ domain. Length = 136

>gnl|CDD|203029 pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain

 Score = 87.7 bits (218), Expect = 6e-23
 Identities = 32/46 (69%), Positives = 42/46 (91%)

Query: 118 VYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHIL 163
           VYS+K+Q +R V+I PS++WGGQGLLG+S+R+CSF GANENVWH+L
Sbjct: 1   VYSAKSQKIREVSIVPSSTWGGQGLLGLSLRWCSFSGANENVWHVL 46

GRASP55 (Golgi re-assembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide- sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system. This region appears to be related to the PDZ domain. Length = 136

>gnl|CDD|203029 pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain

 Score = 74.6 bits (184), Expect = 8e-18
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           V  NSP   AGL+ + D+I+  D+  L +  D L EL+++   + LK+ VY+S+T  VR 
Sbjct: 48  VHPNSPAALAGLQPYSDYIIGTDSGLL-RGEDDLFELVESHEGRPLKLYVYNSETDVVRE 106

Query: 61  VNITPSNSWGGQGLLGVSI 79
           V ITP+  WGG+G LG  I
Sbjct: 107 VTITPNRGWGGEGALGCGI 125

GRASP55 (Golgi re-assembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide- sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system. This region appears to be related to the PDZ domain. Length = 136

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 1  VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
          V   SP  KAGL+A  D I+AI+  ++    D L + ++    K L + V   +  +  T
Sbjct: 19 VVPGSPAAKAGLKA-GDRILAINGQKIKSWED-LVDAVQENPGKPLTLTV--ERNGETIT 74

Query: 61 VNITP 65
          + +TP
Sbjct: 75 LTLTP 79

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|226483 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-----NGIDKELKM---AVYS 52
           V    P  KAGL    D IVAI+ I    D   + + ++      G  +E  +      +
Sbjct: 469 VFPGGPAYKAGLSP-GDKIVAINGISDQLDRYKVNDKIQVHVFREGRLREFLVKLGGDPT 527

Query: 53  SKTQDVRTVNITPSNSWGGQGLLGVSI 79
           ++   +   +  P+        LG   
Sbjct: 528 AQYIILPIGDRNPAQLANAAAWLGEIA 554

Length = 558

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVY 51
          V   SP  KAGL+   D I+A++   +    D  + L +     ++ + V 
Sbjct: 31 VDPGSPAAKAGLKPG-DVILAVNGKPVKSVADLRRALAELKPGDKVTLTVL 80

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG3834|consensus	462		99.92
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	99.78
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.71
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.56
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	99.56
PRK10139	455	serine endoprotease; Provisional	99.51
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.5
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.47
PRK10942	473	serine endoprotease; Provisional	99.44
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	99.34
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	99.28
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.23
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	99.17
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	99.15
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	99.14
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.06
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.05
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	99.02
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.02
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	99.01
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.99
COG5233	417	GRH1 Peripheral Golgi membrane protein [Intracellu	98.96
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.92
PRK10898	353	serine endoprotease; Provisional	98.91
KOG3129|consensus	231		98.88
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.88
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.84
PRK10139	455	serine endoprotease; Provisional	98.82
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.78
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.78
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.72
PRK10942	473	serine endoprotease; Provisional	98.7
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.68
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.58
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	98.53
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	98.39
KOG3834|consensus	462		98.35
PRK09681	276	putative type II secretion protein GspC; Provision	98.21
PRK11186	667	carboxy-terminal protease; Provisional	98.12
KOG1421|consensus	955		97.91
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	97.88
COG3031	275	PulC Type II secretory pathway, component PulC [In	97.48
KOG3553|consensus	124		97.46
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.4
COG0750	375	Predicted membrane-associated Zn-dependent proteas	97.28
KOG3129|consensus	231		97.16
KOG3209|consensus	984		97.13
KOG1320|consensus	473		96.99
KOG3209|consensus	984		96.85
KOG3605|consensus	829		96.71
KOG3580|consensus	1027		96.53
KOG3532|consensus	1051		96.41
PF12812	78	PDZ_1: PDZ-like domain	96.31
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	96.19
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	95.79
KOG1421|consensus	955		95.65
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	95.29
KOG3550|consensus	207		94.76
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	94.67
KOG3542|consensus	1283		94.46
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.23
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	94.15
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	94.1
KOG0606|consensus	1205		93.54
KOG3651|consensus	429		93.52
KOG3580|consensus	1027		92.95
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	92.9
KOG3552|consensus	1298		92.83
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	92.78
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	92.74
KOG1892|consensus	1629		89.38
KOG3606|consensus	358		88.17
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	87.99
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	86.8
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	85.19
PRK10898	353	serine endoprotease; Provisional	84.5
KOG3551|consensus	506		84.49
KOG0609|consensus	542		83.94

>KOG3834|consensus

Probab=99.92  E-value=5.9e-25  Score=175.14  Aligned_cols=157  Identities=54%  Similarity=0.935  Sum_probs=139.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR   80 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~   80 (163)
                      |+.||||++|||++|.|.|++|||..+...+|.+..++....++ ++++|+.......+.+.+.+.+.|.+. .||+.++
T Consensus        22 VqedSpa~~aglepffdFIvSI~g~rL~~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wggq-llGvsvr   99 (462)
T KOG3834|consen   22 VQEDSPAHKAGLEPFFDFIVSINGIRLNKDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGGQ-LLGVSVR   99 (462)
T ss_pred             eecCChHHhcCcchhhhhhheeCcccccCchHHHHHHHHhcccc-eEEEEEecccceeEEEEeccccccccc-ccceEEE
Confidence            57899999999999999999999999998888888888877766 999999877667788888888777766 8999999


Q ss_pred             eecccccccceEEEeeeCc---------------------------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         81 FCSFEGANENVWHILDQDN---------------------------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        81 ~~~~~~~~~~~~~I~~v~~---------------------------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      +...+.+.+..|+|++|+.                           +||..+|++|.++++.|.||+...+..|+++++|
T Consensus       100 Fcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~p  179 (462)
T KOG3834|consen  100 FCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITP  179 (462)
T ss_pred             eccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccchHHHHHHHHhccCCCcceeEeecCCCccceEEeec
Confidence            9888777777787777765                           8899999999999999999999999999999999


Q ss_pred             CCCCCCcceeceeecccccccccccc
Q psy18011        134 SNSWGGQGLLGVSIRFCSFEGANENV  159 (163)
Q Consensus       134 ~~~~~~~g~iG~~~~~~~~~~~~~~~  159 (163)
                      ..-||+.|.|||.+++|+|||||...
T Consensus       180 n~awGgeg~lGCgIG~GyLhrIP~~~  205 (462)
T KOG3834|consen  180 NSAWGGEGALGCGIGYGYLHRIPVSP  205 (462)
T ss_pred             cccccccceecccccceeeeeccccc
Confidence            88899999999999999999999753

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=99.78  E-value=5.8e-18  Score=119.17  Aligned_cols=110  Identities=50%  Similarity=0.878  Sum_probs=82.7

Q ss_pred             EEEEECCCceEEEEEEccCCCCCCcceeeeEEeeecccccccceEEEeeeCc---------------------------h
Q psy18011         48 MAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDN---------------------------D  100 (163)
Q Consensus        48 l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~I~~v~~---------------------------~  100 (163)
                      |+|+.......+++.+.|+..|++.+.||+++++.....+...+++|++|.+                           +
T Consensus         1 l~v~~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~   80 (138)
T PF04495_consen    1 LNVYNAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDED   80 (138)
T ss_dssp             EEEEETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STC
T ss_pred             CceEECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHH
Confidence            4677766667889999887788888999999998766544455666665543                           8


Q ss_pred             HHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeecccccccccc
Q psy18011        101 TLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANE  157 (163)
Q Consensus       101 ~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~~~~~~~  157 (163)
                      +|.++|+++.++++.|.|++.+.+..++++++|...|++.|.|||.+++|+||++|.
T Consensus        81 ~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig~G~Lh~iP~  137 (138)
T PF04495_consen   81 DLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIGYGYLHRIPS  137 (138)
T ss_dssp             HHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE-SGGGS--S
T ss_pred             HHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEecceeeeccCC
Confidence            899999999999999999999899999999999999999999999999999999996

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.71  E-value=3e-16  Score=130.22  Aligned_cols=143  Identities=18%  Similarity=0.213  Sum_probs=100.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCC-C-----CCCcce
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN-S-----WGGQGL   74 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~-~-----~~~~~~   74 (163)
                      |.++|||++||||+ ||+|++|||++|.+|+|....+....+++++.+++.|+++.++.++++.... .     ......
T Consensus       133 V~~~SpA~kAGLk~-GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~  211 (449)
T PRK10779        133 IAPNSIAAQAQIAP-GTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSS  211 (449)
T ss_pred             cCCCCHHHHcCCCC-CCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhhc
Confidence            57899999999999 9999999999999997644444455666789999999886655555553110 0     001123


Q ss_pred             eeeEEeeec-------------cc----ccccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEE
Q psy18011         75 LGVSIRFCS-------------FE----GANENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI  131 (163)
Q Consensus        75 lGl~~~~~~-------------~~----~~~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v  131 (163)
                      +|+.+..+.             ..    .++|.   |+++|+      +++.+.++.++++++.+++.|  +++.+++++
T Consensus       212 lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDv---Il~Ing~~V~s~~dl~~~l~~~~~~~v~l~v~R--~g~~~~~~v  286 (449)
T PRK10779        212 LGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDR---IVKVDGQPLTQWQTFVTLVRDNPGKPLALEIER--QGSPLSLTL  286 (449)
T ss_pred             ccccccCCCcCcEEEeeCCCCHHHHcCCCCCCE---EEEECCEEcCCHHHHHHHHHhCCCCEEEEEEEE--CCEEEEEEE
Confidence            555432210             00    03344   999998      788888888888999999998  667788888


Q ss_pred             ecCCC--CC-Ccceeceeecc
Q psy18011        132 TPSNS--WG-GQGLLGVSIRF  149 (163)
Q Consensus       132 ~p~~~--~~-~~g~iG~~~~~  149 (163)
                      +|...  .+ ..+++|+.+..
T Consensus       287 ~~~~~~~~g~~~~~iGi~~~~  307 (449)
T PRK10779        287 TPDSKPGNGKAEGFAGVVPKV  307 (449)
T ss_pred             EeeeecCCCceeeEEEEeccc
Confidence            88632  12 25779998653

>TIGR00054 RIP metalloprotease RseP

Probab=99.56  E-value=1.3e-13  Score=113.65  Aligned_cols=135  Identities=16%  Similarity=0.201  Sum_probs=91.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR   80 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~   80 (163)
                      |.++|||++|||++ ||+|++|||+++.+|+| ++..+.... +++.+++.|+++.....+++....   .....|....
T Consensus       135 V~~~SpA~~AGL~~-GDvI~~vng~~v~~~~d-l~~~ia~~~-~~v~~~I~r~g~~~~l~v~l~~~~---~~~~~g~vV~  208 (420)
T TIGR00054       135 LDKNSIALEAGIEP-GDEILSVNGNKIPGFKD-VRQQIADIA-GEPMVEILAERENWTFEVMKELIP---RGPKIEPVLS  208 (420)
T ss_pred             cCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhhc-ccceEEEEEecCceEeccccccee---cCCCcCcEEE
Confidence            56899999999999 99999999999999976 555555444 678899999764433222221100   0111232222


Q ss_pred             ee----ccc----ccccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceecee
Q psy18011         81 FC----SFE----GANENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVS  146 (163)
Q Consensus        81 ~~----~~~----~~~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~  146 (163)
                      ..    +..    .++|.   |+++|+      +++.+.++.++++++.++++|  +++.+.++++|..+ +..+ +|+.
T Consensus       209 ~V~~~SpA~~aGL~~GD~---Iv~Vng~~V~s~~dl~~~l~~~~~~~v~l~v~R--~g~~~~~~v~~~~~-~~~~-iGi~  281 (420)
T TIGR00054       209 DVTPNSPAEKAGLKEGDY---IQSINGEKLRSWTDFVSAVKENPGKSMDIKVER--NGETLSISLTPEAK-GKIG-IGIS  281 (420)
T ss_pred             EECCCCHHHHcCCCCCCE---EEEECCEECCCHHHHHHHHHhCCCCceEEEEEE--CCEEEEEEEEEcCC-CceE-EEEe
Confidence            11    111    13455   999998      788888988888999999998  67888889998653 2223 8876


Q ss_pred             ec
Q psy18011        147 IR  148 (163)
Q Consensus       147 ~~  148 (163)
                      +.
T Consensus       282 ~~  283 (420)
T TIGR00054       282 PS  283 (420)
T ss_pred             cc
Confidence            54

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=99.56  E-value=2.8e-14  Score=100.50  Aligned_cols=81  Identities=53%  Similarity=0.879  Sum_probs=64.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR   80 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~   80 (163)
                      |.|||||++|||++|.|+|+.+|+....+- +.+..+++.+.++++.|.|++......+++++.|...|++.+.||+.+.
T Consensus        50 V~p~SPA~~AGL~p~~DyIig~~~~~l~~~-~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig  128 (138)
T PF04495_consen   50 VAPNSPAAKAGLEPFFDYIIGIDGGLLDDE-DDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIG  128 (138)
T ss_dssp             E-TTSHHHHTT--TTTEEEEEETTCE--ST-CHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE
T ss_pred             ecCCCHHHHCCccccccEEEEccceecCCH-HHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEec
Confidence            579999999999999999999999888876 5688999999999999999997777888999999988999999999986


Q ss_pred             ee
Q psy18011         81 FC   82 (163)
Q Consensus        81 ~~   82 (163)
                      ..
T Consensus       129 ~G  130 (138)
T PF04495_consen  129 YG  130 (138)
T ss_dssp             -S
T ss_pred             ce
Confidence            53

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10139 serine endoprotease; Provisional

Probab=99.51  E-value=8.7e-13  Score=109.67  Aligned_cols=124  Identities=17%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCC-CCCcc-----
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNS-WGGQG-----   73 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~-~~~~~-----   73 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.| +...+. ...++++.++++|++  +..++++.+... .....     
T Consensus       297 V~~~SpA~~AGL~~-GDvIl~InG~~V~s~~d-l~~~l~~~~~g~~v~l~V~R~G--~~~~l~v~~~~~~~~~~~~~~~~  372 (455)
T PRK10139        297 VLPNSGSAKAGVKA-GDIITSLNGKPLNSFAE-LRSRIATTEPGTKVKLGLLRNG--KPLEVEVTLDTSTSSSASAEMIT  372 (455)
T ss_pred             ECCCChHHHCCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEECCCCCccccccccc
Confidence            46899999999999 99999999999999976 555554 466788999999988  445554443211 00001     


Q ss_pred             --eee--------------eEEeeecccc----cc-cceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeE
Q psy18011         74 --LLG--------------VSIRFCSFEG----AN-ENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDV  126 (163)
Q Consensus        74 --~lG--------------l~~~~~~~~~----~~-~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~  126 (163)
                        ..|              +.+......+    ++ ..|-.|++||+      ++|.+++++++ +++.|+++|  +++.
T Consensus       373 ~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~l~~~~-~~v~l~v~R--~g~~  449 (455)
T PRK10139        373 PALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKP-AIIALQIVR--GNES  449 (455)
T ss_pred             ccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhCC-CeEEEEEEE--CCEE
Confidence              112              2211100001    11 11224999998      88999998755 789999998  5555


Q ss_pred             EEEEE
Q psy18011        127 RTVNI  131 (163)
Q Consensus       127 ~~v~v  131 (163)
                      +.+.+
T Consensus       450 ~~~~~  454 (455)
T PRK10139        450 IYLLL  454 (455)
T ss_pred             EEEEe
Confidence            55543

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.50  E-value=7.6e-14  Score=89.98  Aligned_cols=59  Identities=31%  Similarity=0.447  Sum_probs=48.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHH-HhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELL-KNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l-~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||++|||++ ||+|++|||++|.++.+ +..++ ...+++++.++++|++  +..++++
T Consensus        21 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-~~~~l~~~~~g~~v~l~v~R~g--~~~~~~v   80 (82)
T PF13180_consen   21 VIPGSPAAKAGLQP-GDIILAINGKPVNSSED-LVNILSKGKPGDTVTLTVLRDG--EELTVEV   80 (82)
T ss_dssp             ESTTSHHHHTTS-T-TEEEEEETTEESSSHHH-HHHHHHCSSTTSEEEEEEEETT--EEEEEEE
T ss_pred             eCCCCcHHHCCCCC-CcEEEEECCEEcCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEE
Confidence            46899999999999 99999999999999966 55555 5678899999999988  4454443

...

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.47  E-value=1.9e-12  Score=107.04  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=82.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCC--C---CCCcce
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSN--S---WGGQGL   74 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~--~---~~~~~~   74 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +...+. ...+..+.++++|++  +..++.+.+..  .   ......
T Consensus       264 V~~~spA~~aGL~~-GDvI~~Vng~~i~~~~~-~~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~l~~~~~~~~~~~~~~  339 (428)
T TIGR02037       264 VLPGSPAEKAGLKA-GDVILSVNGKPISSFAD-LRRAIGTLKPGKKVTLGILRKG--KEKTITVTLGASPEEQASSSNPF  339 (428)
T ss_pred             ccCCCChHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEECcCCCccccccccc
Confidence            56899999999999 99999999999999976 555554 466789999999988  44444443211  0   011234


Q ss_pred             eeeEEeeecc----------------------cc-c---c-cceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEe
Q psy18011         75 LGVSIRFCSF----------------------EG-A---N-ENVWHILDQDN------DTLKELLKNG-IDKELKMAVYS  120 (163)
Q Consensus        75 lGl~~~~~~~----------------------~~-~---~-~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r  120 (163)
                      +|+.+.....                      .+ +   + ..+-.|+++|+      ++|.+++++. +++++.|+|+|
T Consensus       340 lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R  419 (428)
T TIGR02037       340 LGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILR  419 (428)
T ss_pred             cceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            5655432100                      00 0   0 01224888888      7889999874 68899999998


Q ss_pred             CCCCeEEEE
Q psy18011        121 SKTQDVRTV  129 (163)
Q Consensus       121 ~~~~~~~~v  129 (163)
                        +++.+.+
T Consensus       420 --~g~~~~~  426 (428)
T TIGR02037       420 --GGATIFV  426 (428)
T ss_pred             --CCEEEEE
Confidence              5555544

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=99.44  E-value=5.2e-12  Score=105.53  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=82.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHH-HhCCCCeEEEEEEECCCceEEEEEEccCCCC---CCcceee
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELL-KNGIDKELKMAVYSSKTQDVRTVNITPSNSW---GGQGLLG   76 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l-~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~---~~~~~lG   76 (163)
                      |.++|||++|||++ ||+|++|||++|.+|++ +...+ ....++.+.+++.|++......+++......   .....+|
T Consensus       318 V~~~SpA~~AGL~~-GDvIl~InG~~V~s~~d-l~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lG  395 (473)
T PRK10942        318 VLPNSSAAKAGIKA-GDVITSLNGKPISSFAA-LRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNG  395 (473)
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccccccccc
Confidence            46899999999999 99999999999999976 55555 4566788999999988443333433221000   1111244


Q ss_pred             eEEeee------------cc--cc-cc----cceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEE
Q psy18011         77 VSIRFC------------SF--EG-AN----ENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI  131 (163)
Q Consensus        77 l~~~~~------------~~--~~-~~----~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v  131 (163)
                      +.....            .+  .+ +.    ..+-.|++||+      ++|.+++++.+ +++.|+|.|  ++..+.+.+
T Consensus       396 l~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~dl~~~l~~~~-~~v~l~V~R--~g~~~~v~~  472 (473)
T PRK10942        396 IEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAELRKILDSKP-SVLALNIQR--GDSSIYLLM  472 (473)
T ss_pred             ceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhCC-CeEEEEEEE--CCEEEEEEe
Confidence            432200            00  01 11    11225999998      78999998754 789999998  555555544

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.34  E-value=7.1e-12  Score=80.22  Aligned_cols=59  Identities=25%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +...+.. ..+..+.+++.|++  +..++++
T Consensus        17 V~~~spa~~aGL~~-GDiI~~Ing~~v~~~~d-~~~~l~~~~~g~~v~l~v~r~g--~~~~~~~   76 (79)
T cd00991          17 VIVGSPAENAVLHT-GDVIYSINGTPITTLED-FMEALKPTKPGEVITVTVLPST--TKLTNVS   76 (79)
T ss_pred             ECCCChHHhcCCCC-CCEEEEECCEEcCCHHH-HHHHHhcCCCCCEEEEEEEECC--EEEEEEE
Confidence            46899999999999 99999999999999965 6566654 35778999999987  4455544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.28  E-value=2.5e-11  Score=77.17  Aligned_cols=59  Identities=31%  Similarity=0.406  Sum_probs=48.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||+++||++ ||+|++|||+++.+|.+ +..++....+..+.+++.|++  +..++.+
T Consensus        19 v~~~s~a~~~gl~~-GD~I~~ing~~i~~~~~-~~~~l~~~~~~~~~l~v~r~~--~~~~~~l   77 (79)
T cd00989          19 VVPGSPAAKAGLKA-GDRILAINGQKIKSWED-LVDAVQENPGKPLTLTVERNG--ETITLTL   77 (79)
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHHCCCceEEEEEEECC--EEEEEEe
Confidence            46899999999999 99999999999999965 666666555678999999976  4455554

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.23  E-value=6.3e-11  Score=76.40  Aligned_cols=61  Identities=33%  Similarity=0.468  Sum_probs=49.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEEC-CCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSS-KTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~-~~~~~~~v~~~~   65 (163)
                      |.++|||+++||++ ||+|++|||+++.+|  .+ +..++....+..+.+++.|+ +  +..++++.|
T Consensus        20 v~~~s~a~~~gl~~-GD~I~~vng~~i~~~~~~~-~~~~l~~~~~~~i~l~v~r~~~--~~~~~~~~~   83 (85)
T cd00988          20 VLPGSPAAKAGIKA-GDIIVAIDGEPVDGLSLED-VVKLLRGKAGTKVRLTLKRGDG--EPREVTLTR   83 (85)
T ss_pred             ecCCCCHHHcCCCC-CCEEEEECCEEcCCCCHHH-HHHHhcCCCCCEEEEEEEcCCC--CEEEEEEEE
Confidence            46899999999999 999999999999999  65 45666555677899999997 5  556666554

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=99.17  E-value=1.6e-10  Score=73.70  Aligned_cols=59  Identities=19%  Similarity=0.306  Sum_probs=47.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||++ ||++ ||+|++|||+++.+|.+ +..++. ...+..+.+++.|++  +..++++.
T Consensus        15 V~~~s~A~~-gL~~-GD~I~~Ing~~v~~~~~-~~~~l~~~~~~~~v~l~v~r~g--~~~~~~v~   74 (79)
T cd00986          15 VVEGMPAAG-KLKA-GDHIIAVDGKPFKEAEE-LIDYIQSKKEGDTVKLKVKREE--KELPEDLI   74 (79)
T ss_pred             ECCCCchhh-CCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEEE
Confidence            468999997 8999 99999999999999965 656665 456778999999987  44555544

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=99.15  E-value=1.5e-10  Score=73.86  Aligned_cols=58  Identities=36%  Similarity=0.519  Sum_probs=45.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+.+..   ...+..+.+++.|++  +..++.+.
T Consensus        19 V~~~s~a~~aGl~~-GD~I~~Ing~~v~~~~~~l~~---~~~~~~v~l~v~r~g--~~~~~~v~   76 (80)
T cd00990          19 VRDDSPADKAGLVA-GDELVAVNGWRVDALQDRLKE---YQAGDPVELTVFRDD--RLIEVPLT   76 (80)
T ss_pred             ECCCChHHHhCCCC-CCEEEEECCEEhHHHHHHHHh---cCCCCEEEEEEEECC--EEEEEEEE
Confidence            46899999999999 999999999999997553221   135678999999987  44555544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=99.14  E-value=2.6e-10  Score=74.12  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++||++ ||+|++|||+++.+|.+ +..++.. ..+..+.+++.|++
T Consensus        31 v~~~s~a~~~gl~~-GD~I~~Ing~~i~~~~~-~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          31 VDPGSPAAKAGLKP-GDVILAVNGKPVKSVAD-LRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             ECCCCHHHHcCCCc-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECC
Confidence            46899999999999 99999999999999965 5555554 34688999999977

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00054 RIP metalloprotease RseP

Probab=99.06  E-value=5.7e-10  Score=92.13  Aligned_cols=73  Identities=29%  Similarity=0.444  Sum_probs=57.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.++|||++|||++ ||+|++|||+++.+|+| +...+....++++.++++|++  +..++.+.+... ... .+|+.+
T Consensus       210 V~~~SpA~~aGL~~-GD~Iv~Vng~~V~s~~d-l~~~l~~~~~~~v~l~v~R~g--~~~~~~v~~~~~-~~~-~iGi~~  282 (420)
T TIGR00054       210 VTPNSPAEKAGLKE-GDYIQSINGEKLRSWTD-FVSAVKENPGKSMDIKVERNG--ETLSISLTPEAK-GKI-GIGISP  282 (420)
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCceEEEEEECC--EEEEEEEEEcCC-Cce-EEEEec
Confidence            46899999999999 99999999999999965 777777677788999999988  666777766521 111 277754

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.05  E-value=5.7e-10  Score=69.26  Aligned_cols=48  Identities=33%  Similarity=0.586  Sum_probs=40.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAV   50 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v   50 (163)
                      |.++|||++|||++ ||+|++|||+++.+|  .+ +..++....+.++.|++
T Consensus        20 v~~~s~a~~~gl~~-GD~I~~Ing~~v~~~~~~~-~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          20 VEPGSPAERAGLQA-GDVILAVNGTDVKNLTLED-VAELLKKEVGEKVTLTV   69 (70)
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHhhCCCCeEEEEE
Confidence            46899999999999 999999999999999  55 56677666677788776

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=99.02  E-value=2.2e-09  Score=87.37  Aligned_cols=74  Identities=24%  Similarity=0.405  Sum_probs=56.9

Q ss_pred             CCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCC-CCCcceeeeEEe
Q psy18011          3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNS-WGGQGLLGVSIR   80 (163)
Q Consensus         3 ~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~-~~~~~~lGl~~~   80 (163)
                      .+|||++|||++ ||+|++|||+++.+|+| +.+++....++++.+++.|++  +..++.+.|... ......||+.++
T Consensus       122 ~~SPAa~AGLq~-GDiIvsING~~V~s~~D-L~~iL~~~~g~~V~LtV~R~G--e~~tv~V~Pv~~~~d~~ykLGl~Vr  196 (402)
T TIGR02860       122 IHSPGEEAGIQI-GDRILKINGEKIKNMDD-LANLINKAGGEKLTLTIERGG--KIIETVIKPVKDKEEGRYRIGLYIR  196 (402)
T ss_pred             CCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCeEEEEEEECC--EEEEEEEEEeeeCCCCCEEEEEEEE
Confidence            369999999999 99999999999999965 668887777889999999987  556666654311 122356777544

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.02  E-value=1.1e-09  Score=91.09  Aligned_cols=76  Identities=32%  Similarity=0.421  Sum_probs=58.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCC--C-Ccceeee
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSW--G-GQGLLGV   77 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~--~-~~~~lGl   77 (163)
                      |.++|||++|||++ ||+|++|||+++.+|+| +...+....++++.++++|++  +..++++.+....  + ....+|+
T Consensus       228 V~~~SpA~~AGL~~-GDvIl~Ing~~V~s~~d-l~~~l~~~~~~~v~l~v~R~g--~~~~~~v~~~~~~~~g~~~~~iGi  303 (449)
T PRK10779        228 VQPNSAASKAGLQA-GDRIVKVDGQPLTQWQT-FVTLVRDNPGKPLALEIERQG--SPLSLTLTPDSKPGNGKAEGFAGV  303 (449)
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCCCCEEEEEEEECC--EEEEEEEEeeeecCCCceeeEEEE
Confidence            46899999999999 99999999999999965 667777667788999999988  5566666553111  1 1245788


Q ss_pred             EEe
Q psy18011         78 SIR   80 (163)
Q Consensus        78 ~~~   80 (163)
                      .+.
T Consensus       304 ~~~  306 (449)
T PRK10779        304 VPK  306 (449)
T ss_pred             ecc
Confidence            753

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=99.01  E-value=1.5e-09  Score=88.92  Aligned_cols=69  Identities=23%  Similarity=0.309  Sum_probs=52.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEE-ECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVY-SSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~-r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.|||||++|||++ ||+|++|||+++.+|.| +..++.   +..+.++|. |++  +..++.+.+..    ...||+..
T Consensus         5 V~pgSpAe~AGLe~-GD~IlsING~~V~Dw~D-~~~~l~---~e~l~L~V~~rdG--e~~~l~Ie~~~----dedlG~~f   73 (433)
T TIGR03279         5 VLPGSIAEELGFEP-GDALVSINGVAPRDLID-YQFLCA---DEELELEVLDANG--ESHQIEIEKDL----DEDLGLEF   73 (433)
T ss_pred             cCCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHhc---CCcEEEEEEcCCC--eEEEEEEecCC----CCCCcEEe
Confidence            57999999999999 99999999999999976 444442   356889986 555  66777776642    24567765


Q ss_pred             e
Q psy18011         80 R   80 (163)
Q Consensus        80 ~   80 (163)
                      .
T Consensus        74 ~   74 (433)
T TIGR03279        74 T   74 (433)
T ss_pred             c
Confidence            4

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.99  E-value=2.2e-09  Score=83.32  Aligned_cols=59  Identities=20%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      +.++|||+++||++ ||+|++|||+++.+|.+ +..++.. ..+.++.++|+|+|  +.+++.+
T Consensus       198 v~~~s~a~~aGLr~-GDvIv~ING~~i~~~~~-~~~~l~~~~~~~~v~l~V~R~G--~~~~i~v  257 (259)
T TIGR01713       198 GKDPSLFYKSGLQD-GDIAVALNGLDLRDPEQ-AFQALQMLREETNLTLTVERDG--QREDIYV  257 (259)
T ss_pred             cCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCeEEEEEEECC--EEEEEEE
Confidence            35789999999999 99999999999999965 6666665 45578999999988  5455543

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]

Probab=98.96  E-value=6.6e-09  Score=81.17  Aligned_cols=157  Identities=19%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh--------HHH-HHHHHhCCCCeEEEEEEECCCceEE--EEEEccCC-C
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN--------DTL-KELLKNGIDKELKMAVYSSKTQDVR--TVNITPSN-S   68 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~--------d~~-~~~l~~~~~~~v~l~v~r~~~~~~~--~v~~~~~~-~   68 (163)
                      |.+-|||++||.-. ||+|+-+|+.++.--.        +.. ...+...-+.++++.|+.-.+.+..  .+...+.. +
T Consensus        70 v~~~~~~e~~~~~~-~dyilg~n~Dp~~fl~~~r~~s~P~~~~~s~~~~~~~~sl~v~V~slkG~~~~~~~~~~I~~~~~  148 (417)
T COG5233          70 VNPESPAEKAGMVV-GDYILGINEDPLRFLEMNRRRSVPLLVYNSDLEYVRAVSLQVGVDSLKGCQIGMGELYKIPFSQR  148 (417)
T ss_pred             ccccChhHhhcccc-ceeEEeecCCcHHHHHhhccccccchhhcchhhhhhceeEEEEEEeecCcccccceeEecccccc
Confidence            45789999998877 9999999986653210        000 0111223334566666553211111  11111110 0


Q ss_pred             -----CCC-----------cceeeeEEeeecccccccceEEEeeeCc------------------------------hHH
Q psy18011         69 -----WGG-----------QGLLGVSIRFCSFEGANENVWHILDQDN------------------------------DTL  102 (163)
Q Consensus        69 -----~~~-----------~~~lGl~~~~~~~~~~~~~~~~I~~v~~------------------------------~~l  102 (163)
                           ...           ...+|+.+.+.++....+..++|+.|+-                              .++
T Consensus       149 ~~~V~~Nsde~r~~~~~~~~k~~G~~iqws~l~~~v~~~~HilnV~I~d~p~a~a~l~PdEdyi~gs~dg~~~~~ge~~l  228 (417)
T COG5233         149 RCKVEFNSDEIRNDVRRLRRKLRGKDIQWSRLKDVVCSDSHILNVSIQDKPPAYALLSPDEDYIDGSSDGQPLEIGELDL  228 (417)
T ss_pred             ccceeechhhhhchHHHHHHhhhcceeeeeechhhhhhhhheeeeecCCCchhhcccCCcccccccCCCcccccchhhHH
Confidence                 000           1347888777665433333444555421                              678


Q ss_pred             HHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeeccccccccccc
Q psy18011        103 KELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANEN  158 (163)
Q Consensus       103 ~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~~~~~~~~  158 (163)
                      .++++.+.+-++.|++++.-.++.+.+++.|...|+..|.|||..+.|++|++|.-
T Consensus       229 ~Dv~es~~n~pl~Ly~yn~i~d~~R~~T~~~~~h~g~~g~lgc~vghgflhrlP~~  284 (417)
T COG5233         229 EDVNESPVNLPLSLYYYNPIDDQERAKTERDGVHKGIVGILGCQVGHGFLHRLPLA  284 (417)
T ss_pred             HHHhhcccCCceEEEEEecccccccceeeccCccccCccccccccccceeeccccc
Confidence            88999888999999999988899999999998778889999999999999999973

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.92  E-value=5e-09  Score=84.71  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=49.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.| +...+. ...++++.++++|++  +.+++.+.
T Consensus       285 V~~~spA~~aGL~~-GDvI~~Ing~~V~s~~d-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~  345 (351)
T TIGR02038       285 VDPNGPAARAGILV-RDVILKYDGKDVIGAEE-LMDRIAETRPGSKVMVTVLRQG--KQLELPVT  345 (351)
T ss_pred             cCCCChHHHCCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEE
Confidence            46899999999999 99999999999999966 555665 467788999999987  44555544

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=98.91  E-value=5.4e-09  Score=84.55  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +...+. ...++.+.++++|++  +.+++.+.+
T Consensus       286 V~~~spA~~aGL~~-GDvI~~Ing~~V~s~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~l  347 (353)
T PRK10898        286 VSPDGPAAKAGIQV-NDLIISVNNKPAISALE-TMDQVAEIRPGSVIPVVVMRDD--KQLTLQVTI  347 (353)
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEe
Confidence            46899999999999 99999999999999966 555554 467788999999987  445555543

>KOG3129|consensus

Probab=98.88  E-value=9.6e-09  Score=75.90  Aligned_cols=74  Identities=27%  Similarity=0.444  Sum_probs=61.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHH---HHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeee
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLK---ELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGV   77 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~---~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl   77 (163)
                      |.|+|||+.|||+. ||.|++++...--++.. +.   ..+....++.+.++|.|.+  +...+.+.|. .|++.+.||+
T Consensus       146 V~~~SPA~~aGl~~-gD~il~fGnV~sgn~~~-lq~i~~~v~~~e~~~v~v~v~R~g--~~v~L~ltP~-~W~GrGLLGC  220 (231)
T KOG3129|consen  146 VVPGSPADEAGLCV-GDEILKFGNVHSGNFLP-LQNIAAVVQSNEDQIVSVTVIREG--QKVVLSLTPK-KWQGRGLLGC  220 (231)
T ss_pred             cCCCChhhhhCccc-CceEEEecccccccchh-HHHHHHHHHhccCcceeEEEecCC--CEEEEEeCcc-cccCCcceee
Confidence            57999999999999 99999999887777754 33   3345677889999999987  6688888898 6999999999


Q ss_pred             EE
Q psy18011         78 SI   79 (163)
Q Consensus        78 ~~   79 (163)
                      ..
T Consensus       221 ~~  222 (231)
T KOG3129|consen  221 NY  222 (231)
T ss_pred             ee
Confidence            74

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.88  E-value=7.4e-09  Score=83.15  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=49.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||++|||++ ||+|++|||+++.+|+ +.+..++....+.++.+++.|++.....++++.
T Consensus        69 V~~~spA~~aGL~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~  132 (334)
T TIGR00225        69 PFEGSPAEKAGIKP-GDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTLK  132 (334)
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEEE
Confidence            46899999999999 9999999999999984 234455555567899999999865444554443

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.84  E-value=1.3e-08  Score=65.01  Aligned_cols=52  Identities=21%  Similarity=0.254  Sum_probs=40.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||+++||++ ||+|++|||+++.++.+..........+..+.+++.|+
T Consensus        33 v~~~s~a~~~gl~~-GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~   84 (85)
T smart00228       33 VVPGSPAAKAGLKV-GDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            46889999999999 99999999999999865333333233345888888874

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PRK10139 serine endoprotease; Provisional

Probab=98.82  E-value=1.5e-08  Score=84.44  Aligned_cols=57  Identities=18%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVN   62 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~   62 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +..++.... +++.++++|++  +...+.
T Consensus       397 V~~~spA~~aGL~~-GD~I~~Ing~~v~~~~~-~~~~l~~~~-~~v~l~v~R~g--~~~~~~  453 (455)
T PRK10139        397 VVKGSPAAQAGLQK-DDVIIGVNRDRVNSIAE-MRKVLAAKP-AIIALQIVRGN--ESIYLL  453 (455)
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCC-CeEEEEEEECC--EEEEEE
Confidence            46899999999999 99999999999999965 777776654 68999999987  444443

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.78  E-value=2.9e-08  Score=81.30  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||++|||++ ||+|++|||++|.+|. +....++....+.++.+++.|++  +..++++
T Consensus       109 V~~~SPA~~aGl~~-GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g--~~~~~~l  169 (389)
T PLN00049        109 PAPGGPAARAGIRP-GDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP--ETRLVTL  169 (389)
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC--EEEEEEE
Confidence            46899999999999 9999999999999763 23445566566789999999976  4444444

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.78  E-value=1.7e-08  Score=64.52  Aligned_cols=49  Identities=27%  Similarity=0.390  Sum_probs=38.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.++|||+++||++ ||+|++|||+++.+|.. ....++....+ ++.|+|+
T Consensus        32 v~~~~~a~~~gl~~-GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~   81 (81)
T PF00595_consen   32 VVPGSPAERAGLKV-GDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ   81 (81)
T ss_dssp             ECTTSHHHHHTSST-TEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred             EeCCChHHhcccch-hhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence            46899999999999 99999999999999853 23344555443 7777763

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.72  E-value=4.1e-08  Score=81.33  Aligned_cols=52  Identities=19%  Similarity=0.374  Sum_probs=45.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +.+++.. ..++.+.++++|++
T Consensus       369 V~~~SpA~~aGL~~-GDvI~~Ing~~V~s~~d-~~~~l~~~~~g~~v~l~v~R~g  421 (428)
T TIGR02037       369 VVSGSPAARAGLQP-GDVILSVNQQPVSSVAE-LRKVLDRAKKGGRVALLILRGG  421 (428)
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC
Confidence            46899999999999 99999999999999965 6677765 45788999999987

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=98.70  E-value=5.9e-08  Score=81.32  Aligned_cols=51  Identities=18%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +...+...+ +.+.++|+|++
T Consensus       415 V~~~S~A~~aGL~~-GDvIv~VNg~~V~s~~d-l~~~l~~~~-~~v~l~V~R~g  465 (473)
T PRK10942        415 VKPGTPAAQIGLKK-GDVIIGANQQPVKNIAE-LRKILDSKP-SVLALNIQRGD  465 (473)
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCC-CeEEEEEEECC
Confidence            46899999999999 99999999999999955 777777644 78999999987

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.68  E-value=5e-08  Score=62.14  Aligned_cols=47  Identities=30%  Similarity=0.548  Sum_probs=35.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAV   50 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v   50 (163)
                      |.++|||+++||++ ||+|++|||+++.  ++.+ +..++....+ .+.+++
T Consensus        33 v~~~s~a~~~gl~~-GD~I~~ing~~i~~~~~~~-~~~~l~~~~~-~v~l~v   81 (82)
T cd00992          33 VEPGGPAERGGLRV-GDRILEVNGVSVEGLTHEE-AVELLKNSGD-EVTLTV   81 (82)
T ss_pred             ECCCChHHhCCCCC-CCEEEEECCEEcCccCHHH-HHHHHHhCCC-eEEEEE
Confidence            46899999999999 9999999999999  6643 5555554333 555554

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.58  E-value=2.3e-07  Score=76.34  Aligned_cols=63  Identities=24%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      +.++|||++|||++ ||+|++|||+++.+-. +.....+....|.++.|++.|.+..+.+++++.
T Consensus       119 ~~~~~PA~kagi~~-GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~  182 (406)
T COG0793         119 PIDGSPAAKAGIKP-GDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLT  182 (406)
T ss_pred             cCCCChHHHcCCCC-CCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEE
Confidence            35899999999999 9999999999998863 224456667788899999999754455666554

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=98.53  E-value=7e-07  Score=58.10  Aligned_cols=57  Identities=26%  Similarity=0.373  Sum_probs=40.6

Q ss_pred             CCChhhhcCCc--cCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEE
Q psy18011          3 DNSPGQKAGLE--AFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVN   62 (163)
Q Consensus         3 ~~SpA~~AGL~--~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~   62 (163)
                      ..||-++.|+.  + ||+|++|||+++..-.+ ...++....++++.|+|.+.++ ..+++.
T Consensus        29 ~~sPL~~pGv~v~~-GD~I~aInG~~v~~~~~-~~~lL~~~agk~V~Ltv~~~~~-~~R~v~   87 (88)
T PF14685_consen   29 ARSPLAQPGVDVRE-GDYILAINGQPVTADAN-PYRLLEGKAGKQVLLTVNRKPG-GARTVV   87 (88)
T ss_dssp             -B-GGGGGS----T-T-EEEEETTEE-BTTB--HHHHHHTTTTSEEEEEEE-STT--EEEEE
T ss_pred             ccCCccCCCCCCCC-CCEEEEECCEECCCCCC-HHHHhcccCCCEEEEEEecCCC-CceEEE
Confidence            35899999966  9 99999999999998754 8889988899999999998653 445443

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.2e-06  Score=70.58  Aligned_cols=62  Identities=24%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||+++|+++ ||.|+++||+++.+..+....+.....+.++.+++.|++  +.+++.+..
T Consensus       277 v~~~spa~~agi~~-Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g--~~~~~~v~l  338 (347)
T COG0265         277 VLPGSPAAKAGIKA-GDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGG--KERELAVTL  338 (347)
T ss_pred             cCCCChHHHcCCCC-CCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECC--EEEEEEEEe
Confidence            56899999999999 999999999999999764444445567889999999987  445555443

>KOG3834|consensus

Probab=98.35  E-value=8.3e-07  Score=72.02  Aligned_cols=78  Identities=41%  Similarity=0.744  Sum_probs=65.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEE-CCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAI-DNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~I-ng~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.++|||+.|||.+.+|+|+-+ |.+. ... +++..++..+.++.+.+.|++......+++++.|...|++.+.||+-.
T Consensus       116 V~p~SPaalAgl~~~~DYivG~~~~~~-~~~-eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~lGCgI  193 (462)
T KOG3834|consen  116 VEPNSPAALAGLRPYTDYIVGIWDAVM-HEE-EDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGALGCGI  193 (462)
T ss_pred             cCCCCHHHhcccccccceEecchhhhc-cch-HHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccceecccc
Confidence            5789999999999889999999 6544 444 568899999999999999998666677889999887898888888754


Q ss_pred             e
Q psy18011         80 R   80 (163)
Q Consensus        80 ~   80 (163)
                      .
T Consensus       194 G  194 (462)
T KOG3834|consen  194 G  194 (462)
T ss_pred             c
Confidence            3

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=98.21  E-value=5.4e-06  Score=64.61  Aligned_cols=55  Identities=13%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             ChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCC-CCeEEEEEEECCCceEEEEEE
Q psy18011          5 SPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGI-DKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         5 SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~-~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      +...++|||+ ||.+++|||.++.+..+ ..++++... ..++.|+|+|+|  +.+++.+
T Consensus       218 ~lF~~~GLq~-GDva~sING~dL~D~~q-a~~l~~~L~~~tei~ltVeRdG--q~~~i~i  273 (276)
T PRK09681        218 SLFDASGFKE-GDIAIALNQQDFTDPRA-MIALMRQLPSMDSIQLTVLRKG--ARHDISI  273 (276)
T ss_pred             HHHHHcCCCC-CCEEEEeCCeeCCCHHH-HHHHHHHhccCCeEEEEEEECC--EEEEEEE
Confidence            4578999999 99999999999999854 556666544 478999999998  6566654

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.12  E-value=8.6e-06  Score=70.74  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=45.8

Q ss_pred             CCCCChhhhc-CCccCCeEEEEEC--CEe---cCCCh-HHHHHHHHhCCCCeEEEEEEECC-CceEEEEEEc
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAID--NIR---LDQDN-DTLKELLKNGIDKELKMAVYSSK-TQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~In--g~~---v~~~~-d~~~~~l~~~~~~~v~l~v~r~~-~~~~~~v~~~   64 (163)
                      |.|||||++| ||++ ||+|++||  |++   +..|. +....++....|.+|.|+|.|.+ ....+++++.
T Consensus       262 vipGsPA~ka~gLk~-GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~  332 (667)
T PRK11186        262 LVAGGPAAKSKKLSV-GDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLT  332 (667)
T ss_pred             ccCCChHHHhCCCCC-CCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEE
Confidence            4689999998 9999 99999998  544   33443 23567777778889999999843 2344555554

>KOG1421|consensus

Probab=97.91  E-value=0.00047  Score=59.44  Aligned_cols=59  Identities=24%  Similarity=0.467  Sum_probs=49.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||+++ |++ ||..++||+.-+.++ ..+.+++....++.+.|+|+|.+  +..++++.
T Consensus       310 vL~~gpa~k~-Le~-GDillavN~t~l~df-~~l~~iLDegvgk~l~LtI~Rgg--qelel~vt  368 (955)
T KOG1421|consen  310 VLPEGPAEKK-LEP-GDILLAVNSTCLNDF-EALEQILDEGVGKNLELTIQRGG--QELELTVT  368 (955)
T ss_pred             eccCCchhhc-cCC-CcEEEEEcceehHHH-HHHHHHHhhccCceEEEEEEeCC--EEEEEEEE
Confidence            4689999998 999 999999999988888 45778888778899999999988  55666554

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=97.88  E-value=0.00011  Score=58.03  Aligned_cols=75  Identities=24%  Similarity=0.358  Sum_probs=55.6

Q ss_pred             CCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEE-CCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYS-SKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r-~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      ..+|||..- |++ ||.|++|||+++.+..| +..++. ...+++++++++| ++..+..++++... ...+..-+|+++
T Consensus       138 ~~~~~~~gk-l~~-gD~i~avdg~~f~s~~e-~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~-~~~g~~giGIsl  213 (342)
T COG3480         138 IDNSPFKGK-LEA-GDTIIAVDGEPFTSSDE-LIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKN-DDNGKAGIGISL  213 (342)
T ss_pred             cCCcchhce-ecc-CCeEEeeCCeecCCHHH-HHHHHhccCCCCeEEEEEEeccCCCceEEEEEEee-ccCCcceeeeEe
Confidence            457888765 999 99999999999999865 666665 5788999999997 66555666666654 222345677765


Q ss_pred             e
Q psy18011         80 R   80 (163)
Q Consensus        80 ~   80 (163)
                      -
T Consensus       214 ~  214 (342)
T COG3480         214 V  214 (342)
T ss_pred             e
Confidence            4

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=97.48  E-value=0.00034  Score=53.22  Aligned_cols=53  Identities=28%  Similarity=0.332  Sum_probs=44.1

Q ss_pred             CCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCC-CeEEEEEEECCCc
Q psy18011          2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGID-KELKMAVYSSKTQ   56 (163)
Q Consensus         2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~-~~v~l~v~r~~~~   56 (163)
                      .++|...+.|||. ||.-+++|+..+++.+ +..++++...+ .+++++|.|+|..
T Consensus       215 kd~slF~~sglq~-GDIavaiNnldltdp~-~m~~llq~l~~m~s~qlTv~R~G~r  268 (275)
T COG3031         215 KDGSLFYKSGLQR-GDIAVAINNLDLTDPE-DMFRLLQMLRNMPSLQLTVIRRGKR  268 (275)
T ss_pred             CCcchhhhhcCCC-cceEEEecCcccCCHH-HHHHHHHhhhcCcceEEEEEecCcc
Confidence            3568889999999 9999999999999995 46677765444 6899999999844

>KOG3553|consensus

Probab=97.46  E-value=7.4e-05  Score=49.27  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEe
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIR   26 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~   26 (163)
                      |.+||||+.|||+. +|.|+.+||-.
T Consensus        66 V~eGsPA~~AGLri-hDKIlQvNG~D   90 (124)
T KOG3553|consen   66 VSEGSPAEIAGLRI-HDKILQVNGWD   90 (124)
T ss_pred             eccCChhhhhccee-cceEEEecCce
Confidence            57899999999999 99999999943

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.40  E-value=0.00019  Score=60.13  Aligned_cols=53  Identities=30%  Similarity=0.462  Sum_probs=39.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||++|||.+ ||+|++|||.   +  +   ++.....+..+++++.|.+  +-+++.+.
T Consensus       469 V~~~gPA~~AGl~~-Gd~ivai~G~---s--~---~l~~~~~~d~i~v~~~~~~--~L~e~~v~  521 (558)
T COG3975         469 VFPGGPAYKAGLSP-GDKIVAINGI---S--D---QLDRYKVNDKIQVHVFREG--RLREFLVK  521 (558)
T ss_pred             cCCCChhHhccCCC-ccEEEEEcCc---c--c---cccccccccceEEEEccCC--ceEEeecc
Confidence            57899999999999 9999999998   1  1   1222345677889988866  54555444

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=97.28  E-value=0.0012  Score=53.66  Aligned_cols=52  Identities=29%  Similarity=0.335  Sum_probs=41.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCe---EEEEEEE-CC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKE---LKMAVYS-SK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~---v~l~v~r-~~   54 (163)
                      +.++|+|+.||+++ ||.|+++|++++.+|.+ ....+....+..   +.+.+.| ++
T Consensus       136 v~~~s~a~~a~l~~-Gd~iv~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~  191 (375)
T COG0750         136 VAPKSAAALAGLRP-GDRIVAVDGEKVASWDD-VRRLLVAAAGDVFNLLTILVIRLDG  191 (375)
T ss_pred             cCCCCHHHHcCCCC-CCEEEeECCEEccCHHH-HHHHHHhccCCcccceEEEEEeccc
Confidence            35789999999999 99999999999999965 555555444433   7888888 44

>KOG3129|consensus

Probab=97.16  E-value=0.0015  Score=48.75  Aligned_cols=57  Identities=18%  Similarity=0.460  Sum_probs=43.9

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceee
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI  147 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~  147 (163)
                      +|..+++-.|+.      +.+...++.+.++++.++|.|  .++...+.++|.. |.|.|.|||.+
T Consensus       160 gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R--~g~~v~L~ltP~~-W~GrGLLGC~~  222 (231)
T KOG3129|consen  160 GDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIR--EGQKVVLSLTPKK-WQGRGLLGCNY  222 (231)
T ss_pred             CceEEEecccccccchhHHHHHHHHHhccCcceeEEEec--CCCEEEEEeCccc-ccCCcceeeee
Confidence            455444444554      344556667789999999998  7788999999987 99999999984

>KOG3209|consensus

Probab=97.13  E-value=0.00075  Score=58.39  Aligned_cols=50  Identities=18%  Similarity=0.360  Sum_probs=38.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||+++| |+. ||+|++|||+.|.+-+ .++..|+.. .+-+|.|+|..
T Consensus       785 IieGSPAdRCgkLkV-GDrilAVNG~sI~~lsHadiv~LIKd-aGlsVtLtIip  836 (984)
T KOG3209|consen  785 IIEGSPADRCGKLKV-GDRILAVNGQSILNLSHADIVSLIKD-AGLSVTLTIIP  836 (984)
T ss_pred             cccCChhHhhccccc-cceEEEecCeeeeccCchhHHHHHHh-cCceEEEEEcC
Confidence            56899999998 888 9999999999988753 234455554 34678888864

>KOG1320|consensus

Probab=96.99  E-value=0.0025  Score=53.33  Aligned_cols=62  Identities=21%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.|++|+..+|+.+ ||+|++|||++|.+-.+ +..++.. ..+..+.+..+|..  +..++.+.+.
T Consensus       405 Vlp~~~~~~~~~~~-g~~V~~vng~~V~n~~~-l~~~i~~~~~~~~v~vl~~~~~--e~~tl~Il~~  467 (473)
T KOG1320|consen  405 VLPGSINGGYGLKP-GDQVVKVNGKPVKNLKH-LYELIEECSTEDKVAVLDRRSA--EDATLEILPE  467 (473)
T ss_pred             eccCCCcccccccC-CCEEEEECCEEeechHH-HHHHHHhcCcCceEEEEEecCc--cceeEEeccc
Confidence            56899999999999 99999999999999965 7778765 33356666666654  5566666544

>KOG3209|consensus

Probab=96.85  E-value=0.013  Score=51.10  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             CCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHH-hCCCCeEEEEEEE
Q psy18011          2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLK-NGIDKELKMAVYS   52 (163)
Q Consensus         2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~-~~~~~~v~l~v~r   52 (163)
                      .+...|++-| |++ ||+++.|||.+|.--+- ....|+. +..++.|.|+|+|
T Consensus       682 v~lGaAe~DGRL~~-gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRR  734 (984)
T KOG3209|consen  682 VPLGAAEEDGRLRE-GDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRR  734 (984)
T ss_pred             eecccccccCcccC-CCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEee
Confidence            4567788877 999 99999999999985432 2334443 4556889999988

>KOG3605|consensus

Probab=96.71  E-value=0.012  Score=50.63  Aligned_cols=103  Identities=24%  Similarity=0.323  Sum_probs=65.3

Q ss_pred             CCCChhhhcC-CccCCeEEEEECCEecCCC-hHHHHHHHHhCCC-CeEEEEEEECCCceEEEEEEc-cCCCCCCcceeee
Q psy18011          2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQD-NDTLKELLKNGID-KELKMAVYSSKTQDVRTVNIT-PSNSWGGQGLLGV   77 (163)
Q Consensus         2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~~~-~~v~l~v~r~~~~~~~~v~~~-~~~~~~~~~~lGl   77 (163)
                      ..+.||++.| |-. ||+|++|||...--- -..-..++....+ ..|+|+|.+.-  -..++.+. |+    ....|||
T Consensus       681 m~~GpAarsgkLnI-GDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cp--PV~~V~I~RPd----~kyQLGF  753 (829)
T KOG3605|consen  681 MHGGPAARSGKLNI-GDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCP--PVTTVLIRRPD----LRYQLGF  753 (829)
T ss_pred             ccCChhhhcCCccc-cceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCC--CceEEEeeccc----chhhccc
Confidence            4678999998 556 999999999765432 0122355666555 46889998754  33455553 33    2468999


Q ss_pred             EEeeeccc-----ccccc-----eEEEeeeCc--------hHHHHHHHccCC
Q psy18011         78 SIRFCSFE-----GANEN-----VWHILDQDN--------DTLKELLKNGID  111 (163)
Q Consensus        78 ~~~~~~~~-----~~~~~-----~~~I~~v~~--------~~l~~~v~~~~~  111 (163)
                      +++..-+-     +..++     |-+|+.||+        +-+++++.+.-|
T Consensus       754 SVQNGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG  805 (829)
T KOG3605|consen  754 SVQNGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG  805 (829)
T ss_pred             eeeCcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence            98763321     11222     336999998        666677665444

>KOG3580|consensus

Probab=96.53  E-value=0.0028  Score=54.15  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=37.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.+||||++-||+. ||+|++||.++..+-  .+....++....++.+++.-.
T Consensus       436 vqegspA~~eGlqE-GDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ  487 (1027)
T KOG3580|consen  436 VQEGSPAEQEGLQE-GDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQ  487 (1027)
T ss_pred             cccCCchhhccccc-cceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhh
Confidence            57899999999999 999999999876653  234455666666677766543

>KOG3532|consensus

Probab=96.41  E-value=0.0048  Score=53.47  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=35.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDK   44 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~   44 (163)
                      |.+||||.+|.|++ ||+.++|||.||++-++ ..++++...+.
T Consensus       405 v~~ns~a~k~~~~~-gdvlvai~~~pi~s~~q-~~~~~~s~~~~  446 (1051)
T KOG3532|consen  405 VEDNSLADKAAFKP-GDVLVAINNVPIRSERQ-ATRFLQSTTGD  446 (1051)
T ss_pred             ecCCChhhHhcCCC-cceEEEecCccchhHHH-HHHHHHhcccc
Confidence            67999999999999 99999999999999754 66777765543

>PF12812 PDZ_1: PDZ-like domain

Probab=96.31  E-value=0.0073  Score=38.36  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             CCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCC
Q psy18011          3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGID   43 (163)
Q Consensus         3 ~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~   43 (163)
                      .+|++.+-|+.. |-.|++|||+++.+- |.+.+.+...++
T Consensus        39 ~g~~~~~~~i~~-g~iI~~Vn~kpt~~L-d~f~~vvk~ipd   77 (78)
T PF12812_consen   39 GGSLAFAGGISK-GFIITSVNGKPTPDL-DDFIKVVKKIPD   77 (78)
T ss_pred             CCChhhhCCCCC-CeEEEeECCcCCcCH-HHHHHHHHhCCC
Confidence            578888777999 999999999999998 557777776554

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=96.19  E-value=0.025  Score=35.77  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             ccceEEEeeeCc------hHHHHHHH-ccCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         88 NENVWHILDQDN------DTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~-~~~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      +|.   |+++|+      .+|.+++. ..+|+++.|+++|  +++.++++++
T Consensus        35 GD~---I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~   81 (82)
T PF13180_consen   35 GDI---ILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR--DGEELTVEVT   81 (82)
T ss_dssp             TEE---EEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE--TTEEEEEEEE
T ss_pred             CcE---EEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEE
Confidence            455   999998      78888885 4689999999999  6677777664

...

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=95.79  E-value=0.049  Score=44.94  Aligned_cols=55  Identities=22%  Similarity=0.321  Sum_probs=43.6

Q ss_pred             EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCC-CCCcceeceeecc
Q psy18011         93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNS-WGGQGLLGVSIRF  149 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~-~~~~g~iG~~~~~  149 (163)
                      .|++||+      ++|.++++...++++.|++.|  +++.++++++|... ..+.++||+.++.
T Consensus       136 iIvsING~~V~s~~DL~~iL~~~~g~~V~LtV~R--~Ge~~tv~V~Pv~~~~d~~ykLGl~VrD  197 (402)
T TIGR02860       136 RILKINGEKIKNMDDLANLINKAGGEKLTLTIER--GGKIIETVIKPVKDKEEGRYRIGLYIRD  197 (402)
T ss_pred             EEEEECCEECCCHHHHHHHHHhCCCCeEEEEEEE--CCEEEEEEEEEeeeCCCCCEEEEEEEEc
Confidence            5999998      789999988889999999998  66788888888632 2346789986643

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG1421|consensus

Probab=95.65  E-value=0.16  Score=44.55  Aligned_cols=112  Identities=13%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc--cCCCCCC-cceeeeEEeeec-----
Q psy18011         12 LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT--PSNSWGG-QGLLGVSIRFCS-----   83 (163)
Q Consensus        12 L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~--~~~~~~~-~~~lGl~~~~~~-----   83 (163)
                      |.. ||+|+++||+.|+.-+| +..+.      ++.+.+.|+|..  .+++++  |....+. .-..|-.++.+.     
T Consensus       786 l~~-gdiilsvngk~itr~~d-l~d~~------eid~~ilrdg~~--~~ikipt~p~~et~r~vi~~gailq~ph~av~~  855 (955)
T KOG1421|consen  786 LGV-GDIILSVNGKMITRLSD-LHDFE------EIDAVILRDGIE--MEIKIPTYPEYETSRAVIWMGAILQPPHSAVFE  855 (955)
T ss_pred             ccc-ccEEEEecCeEEeeehh-hhhhh------hhheeeeecCcE--EEEEeccccccccceEEEEEeccccCchHHHHH
Confidence            788 99999999999998765 44332      578889999844  555543  4321000 001122111100     


Q ss_pred             ---------------ccccccceE----EEeeeCc------hHHHHHHHccC-CCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         84 ---------------FEGANENVW----HILDQDN------DTLKELLKNGI-DKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        84 ---------------~~~~~~~~~----~I~~v~~------~~l~~~v~~~~-~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                                     ..++..+.+    .|++||+      ++|.+++..-| +.-+++.... .++....+++.|.
T Consensus       856 q~edlp~gvyvt~rg~gspalq~l~aa~fitavng~~t~~lddf~~~~~~ipdnsyv~v~~mt-fd~vp~~~s~k~n  931 (955)
T KOG1421|consen  856 QVEDLPEGVYVTSRGYGSPALQMLRAAHFITAVNGHDTNTLDDFYHMLLEIPDNSYVQVKQMT-FDGVPSIVSVKPN  931 (955)
T ss_pred             HHhccCCceEEeecccCChhHhhcchheeEEEecccccCcHHHHHHHHhhCCCCceEEEEEec-cCCCceEEEeccC
Confidence                           001111111    4899998      88999988765 4456655543 4566666777764

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=95.29  E-value=0.099  Score=32.38  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      +|.   |+++|+      +++...+....+..+.+.+.|  +++...+.++|
T Consensus        33 GD~---I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r--~~~~~~~~l~~   79 (79)
T cd00989          33 GDR---ILAINGQKIKSWEDLVDAVQENPGKPLTLTVER--NGETITLTLTP   79 (79)
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHHCCCceEEEEEEE--CCEEEEEEecC
Confidence            555   999998      678888877667889999988  55667777665

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3550|consensus

Probab=94.76  E-value=0.077  Score=37.86  Aligned_cols=49  Identities=18%  Similarity=0.388  Sum_probs=33.4

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~   51 (163)
                      +.||+.|++- ||+. ||+.++|||..|..-.. ---.++.+.. .++.+.|.
T Consensus       122 iipggvadrhgglkr-gdqllsvngvsvege~hekavellkaa~-gsvklvvr  172 (207)
T KOG3550|consen  122 IIPGGVADRHGGLKR-GDQLLSVNGVSVEGEHHEKAVELLKAAV-GSVKLVVR  172 (207)
T ss_pred             ecCCccccccCcccc-cceeEeecceeecchhhHHHHHHHHHhc-CcEEEEEe
Confidence            4578888877 6999 99999999999876432 1224444433 45666654

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=94.67  E-value=0.21  Score=31.14  Aligned_cols=42  Identities=12%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             ccceEEEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         88 NENVWHILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      +|.   |+++|+      ++|.+.+.. .++..+.+.+.|  +++...+++++.
T Consensus        28 GD~---I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r--~g~~~~~~v~l~   76 (79)
T cd00986          28 GDH---IIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKR--EEKELPEDLILK   76 (79)
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEEEe
Confidence            555   888888      678888875 578899999998  667777777764

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=94.46  E-value=0.032  Score=48.66  Aligned_cols=49  Identities=18%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r   52 (163)
                      |.|||-|+.+||+. ||+|++|||+.-.+-+  ...... ...+..+.++|..
T Consensus       569 V~pgskAa~~GlKR-gDqilEVNgQnfenis--~~KA~eiLrnnthLtltvKt  618 (1283)
T KOG3542|consen  569 VFPGSKAAREGLKR-GDQILEVNGQNFENIS--AKKAEEILRNNTHLTLTVKT  618 (1283)
T ss_pred             ecCCchHHHhhhhh-hhhhhhccccchhhhh--HHHHHHHhcCCceEEEEEec
Confidence            56899999999999 9999999998876652  222222 2233567777765

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.23  E-value=0.37  Score=38.46  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             cccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeC-CCCeEEEEEEecCCCCCCcceeceeecccc
Q psy18011         87 ANENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSS-KTQDVRTVNITPSNSWGGQGLLGVSIRFCS  151 (163)
Q Consensus        87 ~~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~-~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~  151 (163)
                      ++|.   |++||+      ++|.+++++. +|..+++.+.|. +.....++++.+. +..+++.||+++-..+
T Consensus       149 ~gD~---i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~-~~~g~~giGIsl~d~~  217 (342)
T COG3480         149 AGDT---IIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKN-DDNGKAGIGISLVDAP  217 (342)
T ss_pred             cCCe---EEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEee-ccCCcceeeeEeecCc
Confidence            3556   999998      8899999874 799999999973 2333444455544 3445677999885554

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=94.15  E-value=0.24  Score=31.12  Aligned_cols=43  Identities=16%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      +|.   |++||+        .++.++++..+++++.++++|. ++...+++++|.
T Consensus        34 GD~---I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~-~~~~~~~~~~~~   84 (85)
T cd00988          34 GDI---IVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG-DGEPREVTLTRL   84 (85)
T ss_pred             CCE---EEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC-CCCEEEEEEEEC
Confidence            455   888887        4677777766788999999984 277788888874

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=94.10  E-value=0.33  Score=30.40  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             EeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         94 ILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        94 I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      |+++|+      ++|.+.+... +++++.+.++|  +++..+++++
T Consensus        34 I~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r--~g~~~~~~~~   77 (79)
T cd00991          34 IYSINGTPITTLEDFMEALKPTKPGEVITVTVLP--STTKLTNVST   77 (79)
T ss_pred             EEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEE--CCEEEEEEEE
Confidence            999998      6788888765 58899999998  6666666665

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0606|consensus

Probab=93.54  E-value=0.11  Score=47.48  Aligned_cols=29  Identities=31%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD   30 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~   30 (163)
                      |.++|||..|||++ ||.|+.+||+++...
T Consensus       665 v~egsPA~~agls~-~DlIthvnge~v~gl  693 (1205)
T KOG0606|consen  665 VEEGSPAFEAGLSA-GDLITHVNGEPVHGL  693 (1205)
T ss_pred             ecCCCCccccCCCc-cceeEeccCcccchh
Confidence            57899999999999 999999999998864

>KOG3651|consensus

Probab=93.52  E-value=0.15  Score=40.46  Aligned_cols=48  Identities=23%  Similarity=0.434  Sum_probs=34.7

Q ss_pred             CCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEE
Q psy18011          2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~   51 (163)
                      -.++||++-| ++. ||.|++|||..|..-.. ....+++... .++.+++.
T Consensus        38 FD~tPAa~dG~i~~-GDEi~avNg~svKGktKveVAkmIQ~~~-~eV~IhyN   87 (429)
T KOG3651|consen   38 FDKTPAAKDGRIRC-GDEIVAVNGISVKGKTKVEVAKMIQVSL-NEVKIHYN   87 (429)
T ss_pred             ccCCchhccCcccc-CCeeEEecceeecCccHHHHHHHHHHhc-cceEEEeh
Confidence            4689999998 888 99999999999976432 2445565433 45667664

>KOG3580|consensus

Probab=92.95  E-value=0.3  Score=42.28  Aligned_cols=49  Identities=14%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             CChhhhc-CCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          4 NSPGQKA-GLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         4 ~SpA~~A-GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      .+.|++- +|+. ||.|++|||....+.+ .+-..++.... .++.+.|.|+.
T Consensus       229 ~gLAardgnlqE-GDiiLkINGtvteNmSLtDar~LIEkS~-GKL~lvVlRD~  279 (1027)
T KOG3580|consen  229 TGLAARDGNLQE-GDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDS  279 (1027)
T ss_pred             cchhhccCCccc-ccEEEEECcEeeccccchhHHHHHHhcc-CceEEEEEecC
Confidence            3455554 6999 9999999998776642 12346666544 46889999975

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=92.90  E-value=0.71  Score=28.55  Aligned_cols=42  Identities=17%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             ccceEEEeeeCc---hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         88 NENVWHILDQDN---DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        88 ~~~~~~I~~v~~---~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      +|.   |++||+   .+|.++++. .++..+.+++.|  ++..+.+.+++.
T Consensus        33 GD~---I~~Ing~~v~~~~~~l~~~~~~~~v~l~v~r--~g~~~~~~v~~~   78 (80)
T cd00990          33 GDE---LVAVNGWRVDALQDRLKEYQAGDPVELTVFR--DDRLIEVPLTLA   78 (80)
T ss_pred             CCE---EEEECCEEhHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEec
Confidence            556   999998   446667766 367899999998  567777777763

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=92.83  E-value=0.11  Score=46.75  Aligned_cols=49  Identities=16%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+|+|+.- -|++ ||+|++|||++|.+.- |-...++.+ .+..+.|+|-+
T Consensus        82 VT~GGps~G-KL~P-GDQIl~vN~Epv~daprervIdlvRa-ce~sv~ltV~q  131 (1298)
T KOG3552|consen   82 VTEGGPSIG-KLQP-GDQILAVNGEPVKDAPRERVIDLVRA-CESSVNLTVCQ  131 (1298)
T ss_pred             ecCCCCccc-cccC-CCeEEEecCcccccccHHHHHHHHHH-HhhhcceEEec
Confidence            567888774 3999 9999999999998732 434455554 34567888876

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=92.78  E-value=0.57  Score=30.41  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=28.5

Q ss_pred             EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEE
Q psy18011         93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI  131 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v  131 (163)
                      .|++||+      .++..++....|+.+.|+|.+... ..+++.|
T Consensus        45 ~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~~~~-~~R~v~V   88 (88)
T PF14685_consen   45 YILAINGQPVTADANPYRLLEGKAGKQVLLTVNRKPG-GARTVVV   88 (88)
T ss_dssp             EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT--EEEEEE
T ss_pred             EEEEECCEECCCCCCHHHHhcccCCCEEEEEEecCCC-CceEEEC
Confidence            3999998      688999999899999999998543 5666553

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=92.74  E-value=0.47  Score=39.62  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             cccceEEEeeeCc---hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeecccc---cccccccce
Q psy18011         87 ANENVWHILDQDN---DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCS---FEGANENVW  160 (163)
Q Consensus        87 ~~~~~~~I~~v~~---~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~---~~~~~~~~~  160 (163)
                      ++|+   |++|||   .++.++-....+..+.+.|.+ ++++..++++.|..+    --+|+.+....   +++|.-+|+
T Consensus        18 ~GD~---IlsING~~V~Dw~D~~~~l~~e~l~L~V~~-rdGe~~~l~Ie~~~d----edlG~~f~~~~~d~~~~C~N~C~   89 (433)
T TIGR03279        18 PGDA---LVSINGVAPRDLIDYQFLCADEELELEVLD-ANGESHQIEIEKDLD----EDLGLEFTTALFDGLIQCNNRCP   89 (433)
T ss_pred             CCCE---EEEECCEECCCHHHHHHHhcCCcEEEEEEc-CCCeEEEEEEecCCC----CCCcEEeccccCCcccccCCcCc
Confidence            3666   999999   333333222235678998873 367888888888542    24788887655   888888885

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG1892|consensus

Probab=89.38  E-value=0.51  Score=43.07  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=39.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+|++|+.-| |++ ||+.++|||+..---.+.....+....+..|.|+|...
T Consensus       967 VV~GgaAd~DGRL~a-GDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen  967 VVEGGAADHDGRLEA-GDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred             eccCCcccccccccc-CceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence            56899999888 999 99999999998765544455445445567788888653

>KOG3606|consensus

Probab=88.17  E-value=1.1  Score=35.10  Aligned_cols=52  Identities=15%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             CCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      .||..|+..||.+..|+|++|||.+|.--. |....++-++ ...+.++|+..+
T Consensus       202 VpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN-shNLIiTVkPAN  254 (358)
T KOG3606|consen  202 VPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN-SHNLIITVKPAN  254 (358)
T ss_pred             cCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc-ccceEEEecccc
Confidence            478999999998889999999999987531 2233333222 245778887644

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=87.99  E-value=2.2  Score=26.73  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=25.7

Q ss_pred             EeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEE
Q psy18011         94 ILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVN  130 (163)
Q Consensus        94 I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~  130 (163)
                      |+++|+      .++.+.+... .++++.+.++|  +++.+.++
T Consensus        48 I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r--~g~~~~~~   89 (90)
T cd00987          48 ILAVNGKPVKSVADLRRALAELKPGDKVTLTVLR--GGKELTVT   89 (90)
T ss_pred             EEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEee
Confidence            888888      5777777764 48899999998  55555443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=86.80  E-value=2.8  Score=34.06  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|+++|+      ++|.+.++. .++.++.|+++|  +++.+++++++.
T Consensus       301 vI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~  347 (351)
T TIGR02038       301 VILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLR--QGKQLELPVTID  347 (351)
T ss_pred             EEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEec
Confidence            5888888      678888876 578899999998  567777777764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=85.19  E-value=3.7  Score=31.98  Aligned_cols=38  Identities=8%  Similarity=0.081  Sum_probs=29.0

Q ss_pred             EEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         93 HILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      .|++||+      +++.+++... +++.+.|+|+|  +++.+++.+.
T Consensus       214 vIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R--~G~~~~i~v~  258 (259)
T TIGR01713       214 IAVALNGLDLRDPEQAFQALQMLREETNLTLTVER--DGQREDIYVR  258 (259)
T ss_pred             EEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEE--CCEEEEEEEE
Confidence            4899998      6777777764 67899999998  6676776654

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10898 serine endoprotease; Provisional

Probab=84.50  E-value=4.2  Score=33.12  Aligned_cols=40  Identities=13%  Similarity=0.119  Sum_probs=31.3

Q ss_pred             EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|+++|+      .+|.+.+.. .+|+.+.|++.|  +++.+++++++.
T Consensus       302 vI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~  348 (353)
T PRK10898        302 LIISVNNKPAISALETMDQVAEIRPGSVIPVVVMR--DDKQLTLQVTIQ  348 (353)
T ss_pred             EEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEec
Confidence            4888887      577777766 578999999998  567777777764

>KOG3551|consensus

Probab=84.49  E-value=1.4  Score=36.24  Aligned_cols=47  Identities=21%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             CCChhhhcC-CccCCeEEEEECCEecCCChHH-HHHHHHhCCCCeEEEEEE
Q psy18011          3 DNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDT-LKELLKNGIDKELKMAVY   51 (163)
Q Consensus         3 ~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~-~~~~l~~~~~~~v~l~v~   51 (163)
                      +|=.|+|+| |-- ||-|++|||....+..-+ --+.+. ..++++.++|+
T Consensus       119 kGlAADQt~aL~~-gDaIlSVNG~dL~~AtHdeAVqaLK-raGkeV~levK  167 (506)
T KOG3551|consen  119 KGLAADQTGALFL-GDAILSVNGEDLRDATHDEAVQALK-RAGKEVLLEVK  167 (506)
T ss_pred             cccccccccceee-ccEEEEecchhhhhcchHHHHHHHH-hhCceeeeeee
Confidence            566788887 666 999999999988765321 112222 34566666664

>KOG0609|consensus

Probab=83.94  E-value=1.8  Score=36.93  Aligned_cols=50  Identities=22%  Similarity=0.399  Sum_probs=36.4

Q ss_pred             CCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      ..|..|++.| |.. ||+|.+|||..+.+-. +.+..++.... +++++.+...
T Consensus       154 ~~GG~~~r~glL~~-GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~itfkiiP~  205 (542)
T KOG0609|consen  154 MHGGMADRQGLLHV-GDEILEVNGISVANKSPEELQELLRNSR-GSITFKIIPS  205 (542)
T ss_pred             ccCCcchhccceee-ccchheecCeecccCCHHHHHHHHHhCC-CcEEEEEccc
Confidence            4567777777 677 9999999999998752 34556665544 7788888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
4edj_A	209	Crystal Structure Of The Grasp55 Grasp Domain With		4e-44
4edj_A	209	Crystal Structure Of The Grasp55 Grasp Domain With		6e-25
3rle_A	209	Crystal Structure Of Grasp55 Grasp Domain (residues		1e-43
3rle_A	209	Crystal Structure Of Grasp55 Grasp Domain (residues		4e-24

>pdb|4EDJ|A Chain A, Crystal Structure Of The Grasp55 Grasp Domain With A Phosphomimetic Mutation (S189d) Length = 209

Iteration: 1
 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 26/175 (14%)
Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct: 23  VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 82
Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
            ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++                   
Sbjct: 83  TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 142
Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
                  L  L++    K LK+ VY++ T + R V ITP+++WGG+G LG  I +
Sbjct: 143 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGDLGCGIGY 197

>pdb|4EDJ|A Chain A, Crystal Structure Of The Grasp55 Grasp Domain With A Phosphomimetic Mutation (S189d) Length = 209

Iteration: 1
 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 95  LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
           L++DNDTLK+LLK  ++K +KM +YSSKT ++R  ++TPSN WGGQGLLGVSIRFCSF+G
Sbjct: 49  LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDG 108
Query: 155 ANENVWHIL 163
           ANENVWH+L
Sbjct: 109 ANENVWHVL 117

>pdb|3RLE|A Chain A, Crystal Structure Of Grasp55 Grasp Domain (residues 7-208) Length = 209

Iteration: 1
 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/175 (48%), Positives = 118/175 (67%), Gaps = 26/175 (14%)
Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +K  +YSSKT ++R 
Sbjct: 23  VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKXLIYSSKTLELRE 82
Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
            ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++                   
Sbjct: 83  TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 142
Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
                  L  L++    K LK+ VY++ T + R V ITP+++WGG+G LG  I +
Sbjct: 143 VXNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 197

>pdb|3RLE|A Chain A, Crystal Structure Of Grasp55 Grasp Domain (residues 7-208) Length = 209

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 95  LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
           L++DNDTLK+LLK  ++K +K  +YSSKT ++R  ++TPSN WGGQGLLGVSIRFCSF+G
Sbjct: 49  LNKDNDTLKDLLKANVEKPVKXLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDG 108
Query: 155 ANENVWHIL 163
           ANENVWH+L
Sbjct: 109 ANENVWHVL 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	4e-46
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	8e-16
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	4e-05
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	3e-04

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score =  148 bits (375), Expect = 4e-46
 Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 26/175 (14%)

Query: 1   VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
           VQ+NSPG +AGLE FFDFIV+I+  RL++DNDTLK+LLK  ++K +KM +YSSKT ++R 
Sbjct: 23  VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 82

Query: 61  VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
            ++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+                        
Sbjct: 83  TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 142

Query: 97  --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
              +++ L  L++    K LK+ VY++ T + R V ITP+++WGG+G LG  I +
Sbjct: 143 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 197

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 70.5 bits (172), Expect = 8e-16
 Identities = 48/69 (69%), Positives = 61/69 (88%)

Query: 95  LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
           L++DNDTLK+LLK  ++K +KM +YSSKT ++R  ++TPSN WGGQGLLGVSIRFCSF+G
Sbjct: 49  LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDG 108

Query: 155 ANENVWHIL 163
           ANENVWH+L
Sbjct: 109 ANENVWHVL 117

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 1  VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
          VQ NS    AGL+A  D IV +D   L Q       L+++     L + +   +     +
Sbjct: 11 VQPNSAASXAGLQA-GDRIVXVDGQPLTQWVT-FVMLVRDNPGXSLALEI--ERQGSPLS 66

Query: 61 VNITPSNSWGGQ---GLLGVS 78
          + + P +  G     G +G+ 
Sbjct: 67 LTLIPESXPGNGXAIGFVGIE 87

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 1  VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
          +  NS   +A +      + A+D I     +    +L+    D+   + V    +   R 
Sbjct: 9  IAANSIAAEAQIAPG-TELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRD 67

Query: 61 VNITPSN 67
          V +   +
Sbjct: 68 VKLDLRH 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.95
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.6
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	99.59
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.53
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.52
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.49
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.48
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.47
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	99.43
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	99.41
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	99.4
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	99.38
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.38
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.38
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.36
2kl1_A	94	YLBL protein; structure genomics, structural genom	99.35
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.34
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	99.33
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.26
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.24
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.24
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	99.23
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.22
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.22
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.21
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.21
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.2
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.2
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.19
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.19
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.17
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.17
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.17
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.16
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.16
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.15
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.15
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.14
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.14
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.14
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.14
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.14
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.14
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.13
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.13
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.13
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.12
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.12
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.12
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.11
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.11
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.11
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.1
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.1
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.09
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.09
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.09
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.09
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.09
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.09
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.09
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.09
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.08
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.08
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.08
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.08
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.08
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.08
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.08
2ego_A	96	General receptor for phosphoinositides 1- associat	99.08
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.08
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.08
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.07
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.07
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.06
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.06
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.06
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.05
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.05
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.04
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.04
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.04
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.04
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.04
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.04
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.03
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.03
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.03
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.03
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.03
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.02
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.02
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.02
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.02
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.02
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.02
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.02
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.01
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.01
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.01
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.01
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.01
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.01
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.01
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.0
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.0
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.0
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.99
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.99
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.99
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.98
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.98
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.98
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.97
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.97
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.97
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.96
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.96
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.96
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.96
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.96
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.95
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.94
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.94
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.94
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.94
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.94
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.94
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.93
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.93
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.93
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.93
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.93
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.92
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.92
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.92
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.92
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.92
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.92
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.91
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.91
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.91
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.91
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.91
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.9
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.9
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.9
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.89
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.89
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.89
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.88
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.88
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.88
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.87
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.86
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.86
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.86
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.86
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.85
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.85
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.85
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.84
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.83
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.83
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.83
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.82
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.82
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.82
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.82
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.81
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.81
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.8
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.79
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.79
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.78
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.78
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.77
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.77
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.75
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.72
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.72
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.7
3k50_A	403	Putative S41 protease; structural genomics, joint	98.66
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.65
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.65
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.58
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.99
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.53
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.52
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.47
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.41
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.21
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.18
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.81
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.7
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.5
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.46
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.36
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.27
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.16
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	96.53
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	96.2
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	96.2
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	95.63
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	95.32
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	95.06
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	94.02
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	93.46
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	93.39
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	93.37
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	93.15
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	92.96
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	92.73
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	92.23
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	92.03
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	91.97
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	91.78
4fgm_A	597	Aminopeptidase N family protein; structural genomi	91.72
2awx_A	105	Synapse associated protein 97; membrane protein, s	90.52
4amh_A	106	Disks large homolog 1; permutation, protein foldin	90.34
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	90.21
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	90.21
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	90.12
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	89.97
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	89.97
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	89.55
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	89.48
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	88.82
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	88.77
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	88.71
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	88.66
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	87.92
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	87.86
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	87.64
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	87.64
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	87.62
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	87.21
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	86.96
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	86.71
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	86.54
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	86.53
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	86.31
3khf_A	99	Microtubule-associated serine/threonine-protein ki	86.12
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	85.69
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	85.54
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	85.48
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	85.34
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	85.2
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	85.17
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	85.12
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	84.89
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	84.86
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	84.8
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	84.74
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	84.47
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	84.42
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	84.41
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	84.24
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	84.2
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	84.19
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	84.05
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	83.6
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	83.42
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	83.05
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	82.86
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	82.36
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	82.34
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	82.01
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	81.62
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	81.53
2d90_A	102	PDZ domain containing protein 1; structural genomi	81.35
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	81.25
2opg_A	98	Multiple PDZ domain protein; structural protein, s	81.02
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	81.01
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	80.86
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	80.04

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.95  E-value=6.3e-27  Score=175.04  Aligned_cols=158  Identities=50%  Similarity=0.851  Sum_probs=127.4

Q ss_pred             CCCCChhhhcCCccCC-eEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFF-DFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~G-D~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.++|||++|||++ | |+|++|||+++.+|.+....++....++++.++|+|++..+..++++.|...|.....+|+.+
T Consensus        23 V~~~SpA~~AGL~~-G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~~~~lGi~~  101 (209)
T 3rle_A           23 VQENSPGHRAGLEP-FFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSI  101 (209)
T ss_dssp             ECTTSHHHHTTCCT-TTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSSSSSSCEEE
T ss_pred             ECCCCHHHHCCCCc-CCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccccCccceEE
Confidence            57899999999999 9 999999999999998866677777778999999999766677788887654444456788877


Q ss_pred             eeeccc---------------c----cc-cc-eEEEeeeCc-----hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         80 RFCSFE---------------G----AN-EN-VWHILDQDN-----DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        80 ~~~~~~---------------~----~~-~~-~~~I~~v~~-----~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      ......               +    ++ .. +-.|+++|+     ++|.+++++++++++.|+|+|.+....++++++|
T Consensus       102 ~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~v~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p  181 (209)
T 3rle_A          102 RFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP  181 (209)
T ss_dssp             EEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSCCCSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECC
T ss_pred             eecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCEeCCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEe
Confidence            631110               0    11 12 345888887     8899999988999999999996656789999999


Q ss_pred             CCCCCCcceeceeecccccccccccc
Q psy18011        134 SNSWGGQGLLGVSIRFCSFEGANENV  159 (163)
Q Consensus       134 ~~~~~~~g~iG~~~~~~~~~~~~~~~  159 (163)
                      ...|++.|+|||.+++|+||++|.+=
T Consensus       182 ~~~~~g~g~lG~~~~~g~l~~~p~~~  207 (209)
T 3rle_A          182 NSAWGGEGSLGCGIGYGYLHRIPTRP  207 (209)
T ss_dssp             CTTSSSSSSSCEEEECSGGGCCCSCS
T ss_pred             cCCCCCceeeeEEecCceeeeCCCCC
Confidence            87787899999999999999999863

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.60  E-value=4.4e-14  Score=115.80  Aligned_cols=131  Identities=14%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCCCCC---cceee
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNSWGG---QGLLG   76 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~---~~~lG   76 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +...+. ...++++.++|+|++.....++++........   ...+|
T Consensus       270 V~~~spA~~aGL~~-GD~I~~vnG~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~g  347 (436)
T 4a8c_A          270 VLPGSGSAKAGVKA-GDIITSLNGKPLNSFAE-LRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPA  347 (436)
T ss_pred             ECCCChHHHCCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccccccccccC
Confidence            56899999999999 99999999999999966 555554 45678999999998844333343322110000   01122


Q ss_pred             eE-----------------Eeeecccc----cc-cceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEE
Q psy18011         77 VS-----------------IRFCSFEG----AN-ENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRT  128 (163)
Q Consensus        77 l~-----------------~~~~~~~~----~~-~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~  128 (163)
                      +.                 +......+    ++ ..|-.|++||+      ++|.+++++.+ +++.|+|.|  +++.+.
T Consensus       348 l~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~~-~~v~l~v~R--~g~~~~  424 (436)
T 4a8c_A          348 LEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKP-AIIALQIVR--GNESIY  424 (436)
T ss_pred             ceeeecccccccCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhCC-CeEEEEEEE--CCEEEE
Confidence            22                 11100001    11 11224999998      78999998754 489999998  678888


Q ss_pred             EEEecCCC
Q psy18011        129 VNITPSNS  136 (163)
Q Consensus       129 v~v~p~~~  136 (163)
                      ++++|...
T Consensus       425 ~~~~~~~~  432 (436)
T 4a8c_A          425 LLMRLEHH  432 (436)
T ss_pred             EEEEeccc
Confidence            88888653

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=99.59  E-value=3.4e-15  Score=98.04  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=56.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCCCC-------Cc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNSWG-------GQ   72 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~-------~~   72 (163)
                      |.++|||++|||++ ||+|++|||++|.+|++ +...+. ..+++++.++|.|++.....++++... .|.       ..
T Consensus         9 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~d-~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~-~~~~~~~~~~~l   85 (95)
T 3id1_A            9 IAANSIAAEAQIAP-GTELKAVDGIETPDWDA-VRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLR-HWAFEPDKEDPV   85 (95)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECSSHHH-HHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECT-TCCCCTTTSCHH
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHHhcCCCcEEEEEEECCCCceEEEEEEcc-ccccCCCCCCHH
Confidence            46899999999999 99999999999999976 555554 444578999999986433344444433 221       12


Q ss_pred             ceeeeEEee
Q psy18011         73 GLLGVSIRF   81 (163)
Q Consensus        73 ~~lGl~~~~   81 (163)
                      ..||+.++.
T Consensus        86 ~~lGl~p~~   94 (95)
T 3id1_A           86 SSLGIRPRG   94 (95)
T ss_dssp             HHTTEEECC
T ss_pred             HHcCccCCC
Confidence            468998753

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.53  E-value=3.2e-13  Score=98.59  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=77.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCc--eEEEEEEccCCCCCCcceeee
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQ--DVRTVNITPSNSWGGQGLLGV   77 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~--~~~~v~~~~~~~~~~~~~lGl   77 (163)
                      |.|+|||++|| |++ ||+|++|||+++.+|.+.....+....+..+.+++.|.+..  ...++.+....     ..+|+
T Consensus        42 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~-----~~lG~  115 (196)
T 3gsl_A           42 IIPGGAAAQDGRLRV-NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGP-----KGLGF  115 (196)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECCCCEEEEEEEEEEBT-----TBSCE
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCCccccEEEEEecCC-----CCceE
Confidence            46899999999 999 99999999999999965443333445578899999986533  33344443221     13444


Q ss_pred             EEee-----------------ecccc----cc--cceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCC
Q psy18011         78 SIRF-----------------CSFEG----AN--ENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQ  124 (163)
Q Consensus        78 ~~~~-----------------~~~~~----~~--~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~  124 (163)
                      .+..                 ....+    ++  ..|-.|++||+        +++.+++++ .++++.|+|.|++..
T Consensus       116 ~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~  192 (196)
T 3gsl_A          116 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPSNA  192 (196)
T ss_dssp             EEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEESCC
T ss_pred             EEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCCCCc
Confidence            4331                 10011    11  11225999998        677788875 588999999995543

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.52  E-value=1.7e-13  Score=112.80  Aligned_cols=124  Identities=20%  Similarity=0.266  Sum_probs=83.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCC--CC------C
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNS--WG------G   71 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~--~~------~   71 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +...+. ...++++.++|+|++  +..++++.+...  +.      .
T Consensus       289 V~~~spA~~aGL~~-GDvI~~vnG~~v~~~~~-l~~~l~~~~~g~~v~l~V~R~g--~~~~~~v~l~~~~~~~~~~~~~~  364 (451)
T 3pv2_A          289 VNPNSPAELAGLKA-GDIITQINDTKITQATQ-VKTTISLLRVGSTVKIIVERDN--KPLTLSAVVTDIKSHEQKLQSNN  364 (451)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECCSHHH-HHHHHHTSCTTCEEEEEEEETT--EEEEEEEECBCHHHHHHHHHHHS
T ss_pred             cCCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEEccCCcccccccccc
Confidence            46899999999999 99999999999999965 555555 467789999999988  445554443210  00      0


Q ss_pred             cceeeeEEee--ec--------------c--cc-c---c-cceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         72 QGLLGVSIRF--CS--------------F--EG-A---N-ENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        72 ~~~lGl~~~~--~~--------------~--~~-~---~-~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      ...+|+.+..  +.              +  .+ +   + ..|-.|++||+      ++|.+++++ +++++.|+|+|  
T Consensus       365 ~~~~G~~l~~~~~~~~~~~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~-~~~~v~l~v~R--  441 (451)
T 3pv2_A          365 PFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE-KKKELLVQVLR--  441 (451)
T ss_dssp             TTTTTEEEEEEEEECTTSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS-SCSCEEEEEEE--
T ss_pred             ccccccccccCChhHhcccCCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHhc-CCCeEEEEEEE--
Confidence            0122332211  00              0  01 0   0 11224999998      788999987 78899999998  


Q ss_pred             CCeEEEEEE
Q psy18011        123 TQDVRTVNI  131 (163)
Q Consensus       123 ~~~~~~v~v  131 (163)
                      +++.+.+++
T Consensus       442 ~g~~~~v~l  450 (451)
T 3pv2_A          442 GPGSMYLLV  450 (451)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            666666665

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.49  E-value=8.6e-15  Score=105.15  Aligned_cols=120  Identities=20%  Similarity=0.287  Sum_probs=76.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ ....++....+.++.++++|.+  +.+++++.+..    ...+|+.+
T Consensus        34 v~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~--~~~~v~l~~~~----~~~lG~~~  106 (166)
T 1w9e_A           34 VQANSPASLVGLRF-GDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP--FERTITMHKDS----TGHVGFIF  106 (166)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCT--TCEEEEEECCT----TSCCSEEE
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCC--CcEEEEEecCC----CCcEeEEE
Confidence            46899999999999 99999999999999987 4556666777789999995543  33566665431    34577765


Q ss_pred             eee---cc--cc----cc-cceEEEeeeCchHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         80 RFC---SF--EG----AN-ENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        80 ~~~---~~--~~----~~-~~~~~I~~v~~~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      ...   .+  .+    ++ ..+-.|+++|+..+..+    +++++.+.+.|  ++..+.++++|
T Consensus       107 ~~g~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~----~~~~v~~~v~r--~g~~~~l~v~~  164 (166)
T 1w9e_A          107 KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGL----KDSQIADILST--SGTVVTITIMP  164 (166)
T ss_dssp             ETTEEEEECTTSHHHHTTCCSSEEEEEETTEECTTC----CHHHHHHHHHH--SCSEEEEEEEE
T ss_pred             eCCEEEEEccCCHHHHcCCCCCCEEEEECCEECCCC----ChHHHHHHHhh--CCCEEEEEEEE
Confidence            311   00  01    11 12335999998322111    33444555555  44455556555

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.48  E-value=6.7e-13  Score=97.59  Aligned_cols=114  Identities=18%  Similarity=0.295  Sum_probs=79.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCC-CCeEEEEEEECCCc------eEEEEEEccCCCCC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGI-DKELKMAVYSSKTQ------DVRTVNITPSNSWG   70 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~-~~~v~l~v~r~~~~------~~~~v~~~~~~~~~   70 (163)
                      |.++|||++|| |++ ||+|++|||+++.  +|.+ +..++.... +.++.+++.|++..      ...++.+...    
T Consensus        43 v~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~-~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~----  116 (196)
T 1p1d_A           43 IEADSPAERCGVLQI-GDRVMAINGIPTEDSTFEE-ANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKK----  116 (196)
T ss_dssp             CCTTSHHHHTSCCCS-SCCEEEETTBCSTTSCHHH-HHHHHHTCCSSSEEEEEEEECSCSCCBCCSSCEEEEECCC----
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCCeEEEEEEecCCCCCCCCCCcEEEEecCC----
Confidence            56899999999 999 9999999999999  5754 667777654 78999999997632      2244444321    


Q ss_pred             CcceeeeEEeeec--------c------cc----cc--cceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         71 GQGLLGVSIRFCS--------F------EG----AN--ENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        71 ~~~~lGl~~~~~~--------~------~~----~~--~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      ....+|+.+....        .      .+    ++  ..+-.|++||+        ++|.++++++ ++++.|+|+|+
T Consensus       117 ~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~  194 (196)
T 1p1d_A          117 HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKD  194 (196)
T ss_dssp             SSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECC
T ss_pred             CCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeC
Confidence            1234666553320        0      01    11  12335999998        6788888876 89999999984

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.47  E-value=1.3e-12  Score=96.43  Aligned_cols=119  Identities=16%  Similarity=0.232  Sum_probs=76.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh---HHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceee
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN---DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG   76 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~---d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lG   76 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|.   +....++...++..+.|+|+|++......+++.....  ....||
T Consensus        52 V~~~spA~~aG~L~~-GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~--~~~~lG  128 (206)
T 3r0h_A           52 VYPEGQVAADKRLKI-FDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKK--AGKELG  128 (206)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECC--TTCCCC
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecC--CCCccC
Confidence            46899999998 999 9999999999999932   2233445555555599999997655444444432211  123467


Q ss_pred             eEEeeec-------c--cc----cc--cceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCC
Q psy18011         77 VSIRFCS-------F--EG----AN--ENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKT  123 (163)
Q Consensus        77 l~~~~~~-------~--~~----~~--~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~  123 (163)
                      +.+....       +  .+    ++  ..|-+|++||+        +++.+++++ +++++.|+|.|...
T Consensus       129 ~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~~  197 (206)
T 3r0h_A          129 LSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRPKP  197 (206)
T ss_dssp             EEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEECC
T ss_pred             eEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence            6654211       0  01    11  11234999998        456677765 67899999998543

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=99.43  E-value=5.7e-13  Score=88.05  Aligned_cols=75  Identities=17%  Similarity=0.312  Sum_probs=55.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEccCC-CCCCcceeeeE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPSN-SWGGQGLLGVS   78 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~~~-~~~~~~~lGl~   78 (163)
                      |.++|||++ ||++ ||+|++|||+++.+|.+ +..++.. ..++++.+++.|++  +..++++.+.. .......+|+.
T Consensus        14 V~~~spA~~-GL~~-GD~I~~Ing~~v~~~~d-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~~~~~~~~~~~iGi~   88 (100)
T 3i18_A           14 VKDDVPAAD-VLHA-GDLITEIDGNAFKSSQE-FIDYIHSKKVGDTVKINYKHGD--KNEQADIKLTAIDKKGTPGIGIT   88 (100)
T ss_dssp             ECTTSGGGG-TCCT-TCEEEEETTBCCSSHHH-HHHHHHTSCTTCEEEEEEEETT--EEEEEEEECEECSTTCCEECSEE
T ss_pred             eCCCCchHH-CCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEEEEecCCCCCCcEEeEE
Confidence            468999995 9999 99999999999999965 6666664 46789999999987  44555554331 11234578887


Q ss_pred             Ee
Q psy18011         79 IR   80 (163)
Q Consensus        79 ~~   80 (163)
                      +.
T Consensus        89 ~~   90 (100)
T 3i18_A           89 LV   90 (100)
T ss_dssp             EG
T ss_pred             Ee
Confidence            53

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=99.41  E-value=1.3e-13  Score=89.74  Aligned_cols=74  Identities=18%  Similarity=0.286  Sum_probs=55.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhC-CCCeEEEEEEECCCceEEEEEEccCC--CCCCcceeee
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSN--SWGGQGLLGV   77 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~-~~~~v~l~v~r~~~~~~~~v~~~~~~--~~~~~~~lGl   77 (163)
                      |.++|||++ ||++ ||+|++|||+++.+|.+ +..++... +++++.++|.|++  +..++++.+..  ...+...||+
T Consensus         8 V~~~spA~~-GL~~-GD~I~~InG~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~~~~~~~~gr~~~~~   82 (91)
T 2kjp_A            8 VVENMPAKG-KIEV-GDKIISADGKNYQSAEK-LIDYISSKKAGDKVTLKIEREE--KEKRVTLTLKQFPDEPDRAGIGV   82 (91)
T ss_dssp             CCCSSCCSS-CCCS-SCEEEEETTBCCSSHHH-HHHHHSSCCSSCEECEEEESSS--CEECCCEECCCCTTCTTSCSCCS
T ss_pred             ECCCChHHH-cCCC-CCEEEEECCEECCCHHH-HHHHHHcCCCCCEEEEEEEECC--EEEEEEEEEeccCCCCCcceeEE
Confidence            578999999 9999 99999999999999964 77777665 6789999999987  44555554432  1222355666


Q ss_pred             EE
Q psy18011         78 SI   79 (163)
Q Consensus        78 ~~   79 (163)
                      ++
T Consensus        83 ~~   84 (91)
T 2kjp_A           83 SL   84 (91)
T ss_dssp             CC
T ss_pred             ee
Confidence            53

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=99.40  E-value=1.2e-12  Score=84.73  Aligned_cols=61  Identities=28%  Similarity=0.323  Sum_probs=51.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +..++....++.+.+++.|++  +..++.+.+
T Consensus        11 v~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-~~~~l~~~~g~~v~l~v~R~g--~~~~~~v~~   71 (91)
T 2zpm_A           11 VQPNSAASXAGLQA-GDRIVXVDGQPLTQWVT-FVMLVRDNPGXSLALEIERQG--SPLSLTLIP   71 (91)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECCCHHH-HHHHHHHCTTCCEEEEEEETT--EEEEEEECC
T ss_pred             ECCCChHHhcCCCC-CCEEEEECCeEcCCHHH-HHHHHhcCCCCeEEEEEEECC--eEEEEEEEE
Confidence            46899999999999 99999999999999965 666666567788999999987  556666654

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.38  E-value=6e-13  Score=85.71  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=46.2

Q ss_pred             CCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011          2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      .|+|||++|||++ ||+|++|||+++.+|.+ +..++.. ..++++.++++|++  +..++.+
T Consensus        27 ~~~s~A~~aGl~~-GD~I~~ing~~v~~~~d-~~~~~~~~~~g~~v~l~v~R~g--~~~~~~v   85 (87)
T 2i6v_A           27 KDPVLFESIGLQD-GDMAVALNGLDLTDPNV-MNTLFQSMNEMTEMSLTVERDG--QQHDVYI   85 (87)
T ss_dssp             SCHHHHHHTTCCT-TCEEEEETTEETTCHHH-HHHHHHTGGGCSEEEEEEEETT--EEEEEEE
T ss_pred             CCCCHHHHCCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEE
Confidence            4556779999999 99999999999999965 5567764 35688999999987  4454443

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.38  E-value=1.3e-11  Score=90.91  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEECCCc----------eEEEEEEccCC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSSKTQ----------DVRTVNITPSN   67 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~~~~----------~~~~v~~~~~~   67 (163)
                      |.++|||++| ||++ ||+|++|||+++.+|  .+ +..++.. .+.++.|+|.|++..          +..++++... 
T Consensus        40 v~~~spA~~aggl~~-GD~I~~vng~~v~~~~~~~-~~~~~~~-~g~~v~l~v~R~~~~~~~~g~~~~~~~~~v~l~~~-  115 (200)
T 2qt5_A           40 LRQGGIAARSDQLDV-GDYIKAVNGINLAKFRHDE-IISLLKN-VGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKE-  115 (200)
T ss_dssp             ECTTSHHHHTTSCCT-TCEEEEETTEECTTSCHHH-HHHHHHT-CCSEEEEEEEEECCCCCCCCSSEEEEEEEEEEECB-
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHh-CCCeEEEEEeccCCCcccCCCccceeEEEEEEecC-
Confidence            4689999999 9999 999999999999999  55 3355544 467899999986421          3344443221 


Q ss_pred             CCCCcceeeeEEeee----------------cccc----cc--cceEEEeeeCc--------hHHHHHHHccCCCeEEEE
Q psy18011         68 SWGGQGLLGVSIRFC----------------SFEG----AN--ENVWHILDQDN--------DTLKELLKNGIDKELKMA  117 (163)
Q Consensus        68 ~~~~~~~lGl~~~~~----------------~~~~----~~--~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~  117 (163)
                          ...+|+.+...                ...+    ++  ..+-.|++||+        +++.+++++ +++++.|+
T Consensus       116 ----~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~  190 (200)
T 2qt5_A          116 ----GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLL  190 (200)
T ss_dssp             ----TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEE
T ss_pred             ----CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEE
Confidence                12344443210                0001    11  11225999987        778888887 88999999


Q ss_pred             EEeC
Q psy18011        118 VYSS  121 (163)
Q Consensus       118 v~r~  121 (163)
                      |.|+
T Consensus       191 v~R~  194 (200)
T 2qt5_A          191 IEYD  194 (200)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9983

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.38  E-value=2e-12  Score=96.20  Aligned_cols=80  Identities=39%  Similarity=0.725  Sum_probs=67.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR   80 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~   80 (163)
                      |.++|||++|||++.||+|++|||+ +.+|.+ +..++....++++.|+|+|.+..+.+++++.|...|...+.||+.+.
T Consensus       119 V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~-l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~g~lG~~~~  196 (209)
T 3rle_A          119 VESNSPAALAGLRPHSDYIIGADTV-MNESED-LFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIG  196 (209)
T ss_dssp             ECTTSHHHHHTCCTTTEEEEEESSC-CCSSSC-HHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSSSSSCEEEE
T ss_pred             eCCCChHHHCCCCCCCCEEEECCCE-eCCHHH-HHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCceeeeEEec
Confidence            4689999999999956999999998 999965 77788777888999999997655678888888766766789999887


Q ss_pred             ee
Q psy18011         81 FC   82 (163)
Q Consensus        81 ~~   82 (163)
                      +.
T Consensus       197 ~g  198 (209)
T 3rle_A          197 YG  198 (209)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.36  E-value=3.6e-12  Score=88.52  Aligned_cols=61  Identities=30%  Similarity=0.482  Sum_probs=50.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhC-CCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~-~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||+ |||++ ||+|++|||+++.+|.+ +..++... .++++.++|.|++  +..++++.+.
T Consensus        64 V~~~spA~-aGL~~-GD~I~~inG~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~~  125 (134)
T 2l97_A           64 VQSNMPAN-GHLEK-YDVITKVDDKEIASSTD-LQSALYNHSIGDTIKITYYRNG--KEETTSIKLN  125 (134)
T ss_dssp             CSTTSGGG-TTSCS-SCEEEEETTEECCCHHH-HHHHHHHSSTTCEEEEEEEETT--EEEEEEEECC
T ss_pred             ECCCCchH-HCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEEEEc
Confidence            57899999 99999 99999999999999965 66666554 6789999999988  5666666654

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=99.35  E-value=2.2e-12  Score=84.31  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhC-CCCeEEEEEEECCCceEEEEEEccCCC--CCCcceeee
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSNS--WGGQGLLGV   77 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~-~~~~v~l~v~r~~~~~~~~v~~~~~~~--~~~~~~lGl   77 (163)
                      |.++|||++ ||++ ||+|++|||+++.+|.+ +..++... .++++.+++.|++  +..++++.+...  ..+...+|+
T Consensus        12 V~~~spA~~-GL~~-GD~Il~InG~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~~~~~~~~~~~~~~~   86 (94)
T 2kl1_A           12 VLPNMPAAG-RLEA-GDRIAAIDGQPINTSEQ-IVSYVREKQAGDRVRVTFIRDR--KQHEAELVLKPFPHHPNQIGLGV   86 (94)
T ss_dssp             CCTTSTTBT-TBCT-TCEEEEETTBCCCCHHH-HHHHHHHSCTTCCEEEEEEETT--EEEEEEECCCBCSSCTTCBCCSC
T ss_pred             ECCCChHHh-CCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEEEEeeCCCCCCCcEEEE
Confidence            568999999 9999 99999999999999965 66677654 6789999999988  556666654321  122345665


Q ss_pred             EE
Q psy18011         78 SI   79 (163)
Q Consensus        78 ~~   79 (163)
                      .+
T Consensus        87 ~~   88 (94)
T 2kl1_A           87 TL   88 (94)
T ss_dssp             C-
T ss_pred             Ee
Confidence            43

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.34  E-value=1.9e-13  Score=112.37  Aligned_cols=123  Identities=17%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEccCCCCC--------C
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPSNSWG--------G   71 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~--------~   71 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +..++.. ..++++.++|+|++  +..++++.+.....        .
T Consensus       293 V~~gspA~~AGL~~-GDvI~~inG~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~~~~~~~~~~~~~~~  368 (448)
T 1ky9_A          293 VLPNSSAAKAGIKA-GDVITSLNGKPISSFAA-LRAQVGTMPVGSKLTLGLLRDG--KQVNVNLELQQSSQNQVDSSSIF  368 (448)
T ss_dssp             CTTCSSSTTTTCCT-TCEECBSSSSBCCSSHH-HHHHTTSSBTTCCCEEEEESSS--CEEECCCC---------------
T ss_pred             eccCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEEecCCCccccccccc
Confidence            57899999999999 99999999999999965 6666654 56788999999987  44554443321000        0


Q ss_pred             cceeeeEEeee---------ccc--c-ccc----ceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEE
Q psy18011         72 QGLLGVSIRFC---------SFE--G-ANE----NVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTV  129 (163)
Q Consensus        72 ~~~lGl~~~~~---------~~~--~-~~~----~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v  129 (163)
                      ...+|+.+...         .+.  + +..    .+-.|++||+      ++|.+++++.++ ++.|+|.|  ++..+.+
T Consensus       369 ~~~~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~~-~v~l~v~R--~g~~~~~  445 (448)
T 1ky9_A          369 NGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPS-VLALNIQR--GDSTIYL  445 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHcCCC-eEEEEEEE--CCEEEEE
Confidence            12345544210         000  1 111    1224899998      778888887655 89999988  4444444


Q ss_pred             E
Q psy18011        130 N  130 (163)
Q Consensus       130 ~  130 (163)
                      +
T Consensus       446 ~  446 (448)
T 1ky9_A          446 L  446 (448)
T ss_dssp             -
T ss_pred             E
Confidence            4

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.33  E-value=3.7e-12  Score=84.81  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=46.3

Q ss_pred             CCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011          2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      .|+|||++|||++ ||+|++|||++|.+|.+ +..++.. ..++++.++|+|++  +..++++
T Consensus        45 ~pas~A~~aGl~~-GDvI~~ing~~v~~~~d-~~~~~~~~~~g~~v~l~v~R~g--~~~~~~v  103 (105)
T 2i4s_A           45 KDPVLFESIGLQD-GDMAVALNGLDLTDPNV-MNTLFQSMNEMTEMSLTVERDG--QQHDVYI  103 (105)
T ss_dssp             SCTHHHHHHTCCT-TCEEEEETTEETTSTTH-HHHHHHHHTTCSEEEEEEEETT--EEEEEEE
T ss_pred             CCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCeEEEEEEECC--EEEEEEE
Confidence            3456679999999 99999999999999976 5566654 56789999999987  4455443

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.26  E-value=7.6e-12  Score=80.94  Aligned_cols=52  Identities=25%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++.. .+..++.. .++++.++|.|++
T Consensus        34 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g   86 (91)
T 2pkt_A           34 VTPGSKAALANLCI-GDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSE   86 (91)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEEC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            46899999999999 99999999999999961 25556666 7789999999976

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.24  E-value=1.2e-11  Score=79.99  Aligned_cols=51  Identities=24%  Similarity=0.419  Sum_probs=43.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.  ++. .+..++... ++++.|+|.|.+
T Consensus        34 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~-~~~~~l~~~-g~~v~l~v~r~~   86 (91)
T 2vsp_A           34 VQKGGPADLAGLED-EDVIIEVNGVNVLDEPYE-KVVDRIQSS-GKNVTLLVCGKK   86 (91)
T ss_dssp             CCTTSHHHHTTCCT-TCEEEEETTEECTTSCHH-HHHHHHTTS-CSEEEEEEEC--
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHH-HHHHHHHcC-CCEEEEEEEeCC
Confidence            57899999999999 9999999999999  774 466777665 789999999865

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=80.08  Aligned_cols=58  Identities=21%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||++|| |++ ||+|++|||+++.  +|.+ +..++.... ..+.+++.|++  +..++.+
T Consensus        30 v~~~s~A~~aG~l~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~-~~v~l~v~r~g--~~~~~~v   90 (92)
T 3cyy_A           30 ISQDSLAARDGNIQE-GDVVLKINGTVTENMSLTD-AKTLIERSK-GKLKMVVQRDE--RATLLNV   90 (92)
T ss_dssp             ECTTCHHHHSCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHTTT-TEEEEEEEC-----------
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcCC-CcEEEEEEeCC--ceeeeeC
Confidence            46899999999 999 9999999999999  8855 667776544 48999999976  4344444

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=99.23  E-value=2.8e-11  Score=83.15  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=54.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.++|||++| |++ ||+|++|||+++.+|.+ +..++. ...++++.++| |++  + .++++.+.........+|+.+
T Consensus        32 V~~~spA~~a-L~~-GD~Il~InG~~v~~~~d-l~~~l~~~~~g~~v~l~V-R~g--~-~~v~l~~~~~~~~~~~lGi~~  104 (125)
T 2hga_A           32 VVPGSPASKV-LTP-GLVIESINGMPTSNLTT-YSAALKTISVGEVINITT-DQG--T-FHLKTGRNPNNSSRAYMGIRT  104 (125)
T ss_dssp             ECSSSGGGGT-SCT-TCEEEEETTEECSSHHH-HHHHHTTCCTTCEEEEEE-TTE--E-EEEECCBCSSSCCSCBCCEEE
T ss_pred             ECCCChHHHh-cCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEE-ECC--E-EEEEEeccCCCCCceEEEEEe
Confidence            4689999999 999 99999999999999965 666666 35678999999 876  4 555554321122245789876


Q ss_pred             e
Q psy18011         80 R   80 (163)
Q Consensus        80 ~   80 (163)
                      .
T Consensus       105 ~  105 (125)
T 2hga_A          105 S  105 (125)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.22  E-value=2.1e-11  Score=78.20  Aligned_cols=51  Identities=18%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+  +. .+..++.... +++.++|.|++
T Consensus        33 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~-~~~~~l~~~~-~~v~l~v~R~~   85 (87)
T 2pa1_A           33 VAERGKAKDADLRP-GDIIVAINGESAEGMLHA-EAQSKIRQSP-SPLRLQLDRIT   85 (87)
T ss_dssp             ECSSSHHHHTTCCT-TCEEEEETTEESTTCCHH-HHHHHHHTCC-SSEEEEEEECC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHH-HHHHHHHcCC-CeEEEEEEecC
Confidence            46899999999999 99999999999999  54 4677777665 88999999975

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.22  E-value=3.1e-11  Score=81.15  Aligned_cols=60  Identities=27%  Similarity=0.443  Sum_probs=49.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||+++.++.+ +..++..  ++++.+++.|++  +..++.+.+.
T Consensus        42 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-~~~~l~~--~~~v~l~v~R~g--~~~~~~v~~~  101 (113)
T 2pzd_A           42 VILGSPAHRAGLRP-GDVILAIGEQMVQNAED-VYEAVRT--QSQLAVQIRRGR--ETLTLYVTPE  101 (113)
T ss_dssp             EBTTSHHHHHTCCT-TCEEEEETTEECCSHHH-HHHHHHH--CSSEEEEEEETT--EEEEEEECCE
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHhC--CCeEEEEEEECC--EEEEEEEEEe
Confidence            46899999999999 99999999999999865 6666665  578999999987  5566666543

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.21  E-value=2.8e-11  Score=77.71  Aligned_cols=52  Identities=17%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +....++... ++++.++|.|++
T Consensus        34 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g   86 (88)
T 2uzc_A           34 LKDGGKAAQANVRI-GDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES   86 (88)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence            46899999999999 9999999999999993 2244555544 788999999865

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.21  E-value=1.3e-11  Score=80.57  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=44.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC-hHHHHHHHHhCCCCeEEEEEEECCCc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD-NDTLKELLKNGIDKELKMAVYSSKTQ   56 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~~~~~v~l~v~r~~~~   56 (163)
                      |.++|||++|||++ ||+|++|||+++.++ .+.+..++... ++++.|+|.|++..
T Consensus        37 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~   91 (96)
T 2v90_A           37 VDPGLPAKKAGMQA-GDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD   91 (96)
T ss_dssp             ECTTSHHHHTTCCT-TEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence            46899999999999 999999999999993 13466667664 78999999997643

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.20  E-value=9.9e-12  Score=80.18  Aligned_cols=52  Identities=25%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEec--CCChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRL--DQDNDTLKELLKN-GIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v--~~~~d~~~~~l~~-~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++  .+|.+ +..++.. ..++++.++|.|++
T Consensus        35 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           35 VEAGSPAEFSQLQV-DDEIIAINNTKFSYNDSKE-WEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECCTTCHHH-HHHHHHHHHHHTEEEEEEEEEC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEEccCCCHHH-HHHHHHhcCCCCEEEEEEEeCC
Confidence            46899999999999 999999999999  78855 6566654 35688999999865

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.20  E-value=3.3e-11  Score=78.70  Aligned_cols=53  Identities=17%  Similarity=0.350  Sum_probs=43.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++.+..........+.++.++|.|++
T Consensus        41 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g   93 (97)
T 2w4f_A           41 VSEEGPAARAGVRV-GDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRER   93 (97)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCS
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCC
Confidence            46899999999999 999999999999998653222222346789999999976

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.19  E-value=2.8e-11  Score=81.25  Aligned_cols=60  Identities=28%  Similarity=0.432  Sum_probs=48.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +...+.  .++++.+++.|++  +..++.+.+.
T Consensus        42 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-~~~~l~--~g~~v~l~v~R~g--~~~~~~v~~~  101 (112)
T 2p3w_A           42 VAPNSPSQRGGIQD-GDIIVKVNGRPLVDSSE-LQEAVL--TESPLLLEVRRGN--DDLLFSIAPE  101 (112)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECCSHHH-HHHHHH--HCSSEEEEEEETT--EEEEEEECCE
T ss_pred             ECCCChHHHCCCCC-CCEEEEECCEECCCHHH-HHHHHh--CCCeEEEEEEECC--EEEEEEEEEe
Confidence            46899999999999 99999999999999965 555553  3578999999987  5566666543

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.19  E-value=1.6e-11  Score=81.25  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=46.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.. ....++... ++++.|+|.|++  +..++.+.|.
T Consensus        36 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g--~~~~~~v~p~   98 (103)
T 1wf7_A           36 LKDGGKASQAHVRI-GDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRAS--AAAKSEPVSS   98 (103)
T ss_dssp             CCTTCHHHHTTCCT-TCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCS--CCCCCCCCCC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC--CcCCCCCCCC
Confidence            57899999999999 99999999999999832 233444443 678999999977  3344444443

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.17  E-value=7.7e-11  Score=79.01  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             CCCCChhhhcCC-ccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECCCceEEEEE
Q psy18011          1 VQDNSPGQKAGL-EAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSKTQDVRTVN   62 (163)
Q Consensus         1 V~~~SpA~~AGL-~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~   62 (163)
                      |.++|||++||| ++ ||+|++|||+++.+  +++ +..++....++++.+++.|++.....++.
T Consensus        33 v~~~spA~~aGll~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~g~~v~l~v~R~g~~~~~~~~   95 (112)
T 1qau_A           33 LIRGGAAEQSGLIQA-GDIILAVNDRPLVDLSYDS-ALEVLRGIASETHVVLILRGPEGFTTHLE   95 (112)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTSCHHH-HHHHHHHSCSSSEEEEEEECCTTSEEEEE
T ss_pred             eCCCChHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCcEEEEEEeCCcccceEee
Confidence            468999999998 99 99999999999999  754 66777766778999999998755444443

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.17  E-value=4.9e-11  Score=77.60  Aligned_cols=51  Identities=20%  Similarity=0.301  Sum_probs=43.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++  .+ +..++.... +++.++|+|++
T Consensus        37 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~-~~v~l~v~R~g   89 (94)
T 1vb7_A           37 VTERGKAEAADLRP-GDIIVAINGQSAENMLHAE-AQSKIRQSA-SPLRLQLDRSS   89 (94)
T ss_dssp             BCTTSSHHHHTCCT-TCEEEEETTEECTTCCHHH-HHHHHHTCC-SSEEEEEECCC
T ss_pred             ECCCCHHHHCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCC-CcEEEEEEECC
Confidence            46899999999999 999999999999997  55 556676655 88999999976

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.17  E-value=6.7e-11  Score=81.03  Aligned_cols=53  Identities=26%  Similarity=0.371  Sum_probs=43.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|  .+....+.....++++.|+|.|++
T Consensus        58 V~~gspA~~aGL~~-GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           58 VLEDSPAAKEGLEE-GDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             ECTTCHHHHTTCCT-TEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            46899999999999 999999999999999  554433444467789999999864

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.16  E-value=3.7e-11  Score=83.91  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECCCc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSKTQ   56 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~~~   56 (163)
                      |.++|||++|||++ ||+|++|||+++.+  +. .+..++....++++.++|.|++..
T Consensus        71 V~~~spA~~aGL~~-GD~I~~vng~~v~~~~~~-~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A           71 VSEGGPAEIAGLQI-GDKIMQVNGWDMTMVTHD-QARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHH-HHHHHHCCTTCSEEEEEEEECC--
T ss_pred             ECCCCHHHHCCCCC-CCEEEEECCEEcCCCCHH-HHHHHHHhCCCCEEEEEEEECCEE
Confidence            46899999999999 99999999999995  54 466777666678999999998733

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=8.6e-11  Score=76.44  Aligned_cols=52  Identities=23%  Similarity=0.188  Sum_probs=42.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. .....++.. .++++.|+|.|++
T Consensus        39 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g   91 (94)
T 2eeg_A           39 VHAGSKAALAALCP-GDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGP   91 (94)
T ss_dssp             CCSSSHHHHTTCCT-TCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCS
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            57899999999999 9999999999999973 223344444 5678999999865

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.15  E-value=8.6e-11  Score=75.84  Aligned_cols=51  Identities=16%  Similarity=0.413  Sum_probs=40.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHH-HHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDT-LKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~-~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+. ...++. ..++.+.++|.|+
T Consensus        39 V~~~spA~~aGl~~-GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~   90 (91)
T 1m5z_A           39 IRPAGPGDLGGLKP-YDRLLQVNHVRTRDFDCCLVVPLIA-ESGNKLDLVISRN   90 (91)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence            46899999999999 999999999999998532 223344 3467899999874

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.15  E-value=5.2e-11  Score=79.89  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=43.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|||++ ||+|++|||+++.+|  .+ +..++...+++++.++|.|.
T Consensus        51 V~~gspA~~AGL~~-GD~Il~VnG~~v~~~~~~d-v~~~i~~~~~~~v~l~V~~~  103 (109)
T 2vsv_A           51 LDPYCSASVAGARE-GDYIVSIQLVDCKWLTLSE-VMKLLKSFGEDEIEMKVVSL  103 (109)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHH-HHHHHHTTTTSCEEEEEESC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCeEEEEEEEC
Confidence            46899999999999 999999999999955  44 56777776667799999875

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.14  E-value=8.1e-11  Score=77.00  Aligned_cols=52  Identities=17%  Similarity=0.375  Sum_probs=42.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +.+..++.. .++++.|+|.|++
T Consensus        44 V~~~spA~~aG~L~~-GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g   97 (98)
T 1ihj_A           44 IVPDSPAHLCGRLKV-GDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTFD   97 (98)
T ss_dssp             ECTTSHHHHHCSCCT-TCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC-
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999982 235556655 6789999999965

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.14  E-value=8.2e-11  Score=75.84  Aligned_cols=51  Identities=20%  Similarity=0.380  Sum_probs=43.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++  .+ +..++... +..+.+++.|.+
T Consensus        35 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~-~~~v~l~v~r~~   87 (90)
T 2he4_A           35 VDPGSPAARSGLRA-QDRLIEVNGQNVEGLRHAE-VVASIKAR-EDEARLLVVGPS   87 (90)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTSCHHH-HHHHHTTS-SSEEEEEEECCC
T ss_pred             ECCCChHHHCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCcEEEEEEccC
Confidence            46899999999999 999999999999998  44 55666654 688999999864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.14  E-value=4.4e-11  Score=96.65  Aligned_cols=113  Identities=21%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEECCCceEEEEEEccCCCCCCcceeee
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGV   77 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl   77 (163)
                      |.+||||++|| |++ ||+|++|||+++.+|. +....++... .+.++.+++.|.+..  .++.+....   ....||+
T Consensus       239 V~~gspA~~aG~L~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~--~~v~l~~~~---~~~~lG~  312 (388)
T 3suz_A          239 MMNGGPAARSGKLSI-GDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPV--TTVLIKRPD---LKYQLGF  312 (388)
T ss_dssp             CCCSSHHHHTCCCCT-TCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSC--C------------------
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccccccccc--ceeeEeecC---CCCccce
Confidence            57899999999 999 9999999999999994 2355666654 456799999997643  444432111   1235666


Q ss_pred             EEeeeccc-----c-ccc----ceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         78 SIRFCSFE-----G-ANE----NVWHILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        78 ~~~~~~~~-----~-~~~----~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      .+....+.     + +..    .|-+|++||+        +++.+++++ .++.+.|+|..
T Consensus       313 ~i~~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p  372 (388)
T 3suz_A          313 SVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMP  372 (388)
T ss_dssp             -------------------------------------------------------------
T ss_pred             EEecCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEe
Confidence            54321110     1 111    1224999998        445555554 45556666643

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=73.98  Aligned_cols=50  Identities=28%  Similarity=0.417  Sum_probs=41.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|||++ ||+|++|||+++.+|  .+ +..++... +..+.++|.|+
T Consensus        30 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~-~~~v~l~v~R~   81 (83)
T 2kv8_A           30 VMRGSPADFVGLRA-GDQILAVNEINVKKASHED-VVKLIGKC-SGVLHMVIAEG   81 (83)
T ss_dssp             CCTTSTTTTTTCCT-TCEEEEETTEECSSCCHHH-HHHHHTTC-SSCEEEEEECC
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhC-CCeEEEEEEcC
Confidence            56899999999999 999999999999999  44 44555443 45689999885

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.14  E-value=7.5e-11  Score=93.92  Aligned_cols=61  Identities=21%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.| +..++.. .+++++.|+|.|++  +.+++++.+
T Consensus       270 V~~~spA~~aGL~~-GDvI~~ing~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~l  331 (345)
T 3stj_A          270 VLPGSGSAKAGVKA-GDIITSLNGKPLNSFAE-LRSRIATTEPGTKVKLGLLRNG--KPLEVEVTL  331 (345)
T ss_dssp             ECTTSHHHHHTCCT-TCEECEETTEECSCHHH-HHHHHHTSCTTCEEEEEEEETT--EEEEEEEEC
T ss_pred             eccCChHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEE
Confidence            46899999999999 99999999999999965 6666654 57899999999988  445555543

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.14  E-value=6.2e-11  Score=77.40  Aligned_cols=51  Identities=22%  Similarity=0.380  Sum_probs=44.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  +.+ +..++.. .++++.|+|.|++
T Consensus        39 V~~~spA~~aG~l~~-GD~I~~ing~~v~~~~~~~-~~~~l~~-~g~~v~l~v~R~~   92 (97)
T 2jil_A           39 VRPGGPADREGTIKP-GDRLLSVDGIRLLGTTHAE-AMSILKQ-CGQEAALLIEYDV   92 (97)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECSSCCHHH-HHHHHHH-SCSEEEEEEEEEC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 99999999999999  744 6677766 7789999999965

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=4.1e-11  Score=79.30  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|||++ ||+|++|||+++.+  |.+ +..++... ++++.|+|.|++.
T Consensus        36 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~-g~~v~l~v~R~g~   89 (103)
T 1v5l_A           36 ITPGSKAAAANLCP-GDVILAIDGFGTESMTHAD-AQDRIKAA-SYQLCLKIDRAET   89 (103)
T ss_dssp             BCTTSTTGGGTCCT-TCBEEEETTEECSSCCHHH-HHHHHTTC-CSEEECEECCCTT
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhC-CCeEEEEEEECCe
Confidence            46899999999999 99999999999999  754 66777665 7899999999763

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=1.1e-10  Score=78.05  Aligned_cols=54  Identities=17%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|||++ ||+|++|||+++.++.+..........+.++.|+|.|++.
T Consensus        53 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~  106 (110)
T 1x5q_A           53 VSEEGPAARAGVRV-GDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESG  106 (110)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSS
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCc
Confidence            46899999999999 9999999999999964422222223367899999999763

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.13  E-value=9.2e-11  Score=74.70  Aligned_cols=52  Identities=23%  Similarity=0.307  Sum_probs=40.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +....++.. .++++.++|.|++
T Consensus        32 V~~~spA~~aGl~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~   84 (85)
T 1rgw_A           32 ITPGSKAAQSQLSQ-GDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKSK   84 (85)
T ss_dssp             ECTTSHHHHSSCCC-CSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999999 9999999999999983 123344443 3456999998864

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.12  E-value=3.8e-11  Score=81.65  Aligned_cols=53  Identities=15%  Similarity=0.288  Sum_probs=45.0

Q ss_pred             CCC--CChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEECCCc
Q psy18011          1 VQD--NSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSSKTQ   56 (163)
Q Consensus         1 V~~--~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~~~~   56 (163)
                      |.+  +|||++|||++ ||+|++|||+++.+|  .+ +..++... ++++.|+|.|++..
T Consensus        51 V~~~~~spA~~aGL~~-GD~Il~Vng~~v~~~~~~d-l~~~l~~~-g~~v~l~v~R~g~~  107 (118)
T 2yub_A           51 VNRMHISPNNRNAIHP-GDRILEINGTPVRTLRVEE-VEDAIKQT-SQTLQLLIEHDPVP  107 (118)
T ss_dssp             CCTTTSCTTHHHHCCT-TCCEEEESSSBTTTSCHHH-HHHHHHCC-SSCEEEEEEECSSC
T ss_pred             ecCCCCChHHHcCCCC-CCEEEEECCEECCCcCHHH-HHHHHHhC-CCEEEEEEEECCEE
Confidence            346  99999999999 999999999999999  76 55666655 78899999997733

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.12  E-value=1.2e-10  Score=74.17  Aligned_cols=51  Identities=12%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCC-CCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI-DKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~-~~~v~l~v~r   52 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +.+..++.... ++++.++|.|
T Consensus        32 v~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           32 LVLDGPAALDGKMET-GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            46899999999 999 9999999999999652 33556776543 6788888865

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.12  E-value=9.5e-11  Score=76.85  Aligned_cols=52  Identities=31%  Similarity=0.389  Sum_probs=43.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|||++ ||+|++|||+++.  +|.+ +..++. ..++.+.+++.|++.
T Consensus        41 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~-~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           41 VEDGSPAQEAGLRA-GDLITHINGESVLGLVHMD-VVELLL-KSGNKISLRTTALEN   94 (99)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHH-HHHHHH-HSCSEEEEEEECSCS
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHh-cCCCEEEEEEEECCC
Confidence            46899999999999 9999999999999  6644 555555 356889999999653

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=75.09  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=41.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +....++... ++++.++|.|++
T Consensus        34 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~   86 (89)
T 2q3g_A           34 LTPGGKAAQAGVAV-GDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAI   86 (89)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEEC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            46899999999999 9999999999999752 2244555543 678999999865

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.11  E-value=9.8e-11  Score=73.68  Aligned_cols=50  Identities=22%  Similarity=0.356  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.  +|.+ +..++.... ..+.+++.|+
T Consensus        28 v~~~s~A~~aG~l~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~-~~v~l~v~R~   80 (81)
T 2rcz_A           28 ISQDSLAARDGNIQE-GDVVLKINGTVTENMSLTD-AKTLIERSK-GKLKMVVQRD   80 (81)
T ss_dssp             ECTTSHHHHHSSCCT-TCEEEEETTEECTTCCHHH-HHHHHHTST-TEEEEEEEC-
T ss_pred             ECCCChHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHCCC-CeEEEEEEeC
Confidence            46899999999 999 9999999999999  8855 667776544 4889999875

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.11  E-value=1.6e-10  Score=76.00  Aligned_cols=52  Identities=17%  Similarity=0.374  Sum_probs=42.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +.+..++...+ .++.|+|.|++
T Consensus        43 V~~~spA~~aGL~~-GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~   95 (100)
T 1whd_A           43 VDSGGPAERAGLQQ-LDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRVS   95 (100)
T ss_dssp             CCTTSHHHHHTCCS-SCEEEEETTEECTTCCHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            57899999999999 9999999999999762 33556666544 45999999864

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.11  E-value=2.2e-10  Score=74.87  Aligned_cols=53  Identities=23%  Similarity=0.394  Sum_probs=42.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++...+ +++.++|.|++.
T Consensus        37 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~~~   91 (98)
T 2opg_A           37 VYEEGAACKDGRLWA-GDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRDEA   91 (98)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEECSS
T ss_pred             ECCCChHHhCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcCCC
Confidence            46899999999 999 9999999999999874 23444555443 789999999763

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.10  E-value=1.5e-10  Score=91.15  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEE-CCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYS-SKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r-~~~~~~~~v~~~~   65 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +..++.. .+++++.|+|+| ++  +.+++++.+
T Consensus       249 v~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~~g--~~~~~~v~~  311 (324)
T 1y8t_A          249 VVAGGAAANAGVPK-GVVVTKVDDRPINSADA-LVAAVRSKAPGATVALTFQDPSG--GSRTVQVTL  311 (324)
T ss_dssp             ECTTSTTTTTTCCT-TCEEEEETTEECCSHHH-HHHHHHTSCTTCEEEEEEECSSC--CEEEEEEEC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECCC--CEEEEEEEE
Confidence            46899999999999 99999999999999965 6666654 567899999999 87  445555543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.10  E-value=2e-10  Score=75.08  Aligned_cols=52  Identities=15%  Similarity=0.243  Sum_probs=42.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +.+..++. ..++.+.|+|.|++
T Consensus        37 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~   90 (97)
T 1n7e_A           37 LTKGGLAERTGAIHI-GDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQT   90 (97)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998652 33556665 46788999999876

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=6.1e-11  Score=81.10  Aligned_cols=52  Identities=21%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||++|.++.+ +..++....+..+.|+|.|++
T Consensus        55 V~~~spA~~aG~l~~-GD~I~~ing~~v~~~~~-~~~~l~~~~g~~v~l~v~R~g  107 (124)
T 1wh1_A           55 IDPNSIAAKDGRIRE-GDRIIQINGIEVQNREE-AVALLTSEENKNFSLLIARPE  107 (124)
T ss_dssp             ECSSSHHHHTCCCCT-TCEEEEESSCBCCSHHH-HHHHHTCSSCCSCCEEEEECS
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCEEEEEEEECC
Confidence            46899999999 999 99999999999999854 777777666788999999977

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.09  E-value=2.9e-11  Score=79.18  Aligned_cols=52  Identities=25%  Similarity=0.427  Sum_probs=43.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+  +.+ +..++....+..+.+++.|++
T Consensus        40 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~~~~~l~v~R~g   93 (98)
T 2jxo_A           40 VDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGD-VVSAIRAGGDETKLLVVDRET   93 (98)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHH-HHHHHHTTTTEEEEEECCHHH
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCcEEEEEEECCc
Confidence            46899999999999 99999999999998  754 667777666667778888754

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.3e-10  Score=74.74  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=43.7

Q ss_pred             CCCCChhhh-cCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQK-AGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~-AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++ +||++ ||+|++|||+++.  +|+ .+..++...++ ++.|++.|.+
T Consensus        32 V~~gspA~~~agL~~-GD~I~~Ing~~v~~~~~~-~~~~~l~~~~~-~v~l~v~r~~   85 (88)
T 1kwa_A           32 IMHGGMIHRQGTLHV-GDEIREINGISVANQTVE-QLQKMLREMRG-SITFKIVPSY   85 (88)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEEGGGSCHH-HHHHHHHHCCE-EEEEEEECCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHH-HHHHHHhcCCC-cEEEEEECCc
Confidence            468999999 89999 9999999999999  785 47778877666 8999998864

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.09  E-value=1.9e-10  Score=76.25  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||++|| |++ ||+|++|||+++.+... ....++.. .+..+.|+|.|++  ......+.|
T Consensus        40 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~--~~~~~~~~p  102 (105)
T 2awx_A           40 IIEGGAAHKDGKLQI-GDKLLAVNSVSLEEVTHEEAVTALKN-TSDFVYLKVAKPT--SMYISRHHH  102 (105)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCBHHHHHHHHHS-CCSEEEEEEECCC--C--------
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCC--CCCCccccc
Confidence            46899999999 999 99999999999987432 23344443 3688999999976  334444443

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.09  E-value=4.1e-10  Score=74.90  Aligned_cols=62  Identities=18%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCC-ceEEEEEEc
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKT-QDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~-~~~~~v~~~   64 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++.. .+.++.|+|.|++. ....++++.
T Consensus        39 V~~gspA~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~~~~v~l~  103 (106)
T 4amh_A           39 IIEGGAAHKDGKLQI-GDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKPGSGEKIMEIKLI  103 (106)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECCSSSCSEEEEEEE
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCCCeEEEEEEe
Confidence            46899999999 999 9999999999997642 223444544 45689999999763 334455543

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.09  E-value=2.4e-10  Score=74.22  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++.+ . .++. ...++++.|+|+|++
T Consensus        36 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~-~-~~~~~~~~g~~v~l~v~R~~   87 (93)
T 2dls_A           36 VRPGGAAMKAGVKE-GDRIIKVNGTMVTNSSH-L-EVVKLIKSGAYVALTLLGSS   87 (93)
T ss_dssp             ECSSSTTTTTTCCS-SCEEEEETTEECSSSCH-H-HHHHHHTSSSEEEEEEECCC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCH-H-HHHHhhcCCCEEEEEEEECC
Confidence            46899999999999 99999999999999854 2 2332 235789999999865

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.09  E-value=1.6e-10  Score=90.94  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=50.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +..++.. .+++++.|+|+|++  +..++++.+
T Consensus       251 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~  312 (318)
T 1te0_A          251 VSPDGPAANAGIQV-NDLIISVDNKPAISALE-TMDQVAEIRPGSVIPVVVMRDD--KQLTLQVTI  312 (318)
T ss_dssp             ECTTSTTTTTCCCT-TCCEEEETTEECCCHHH-HHHHHHTSCTTCEEEEEEESSS--CEEEEEEEC
T ss_pred             eCCCChHHHCCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEE
Confidence            46899999999999 99999999999999965 6677765 67889999999988  445555543

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=9.3e-11  Score=78.85  Aligned_cols=51  Identities=25%  Similarity=0.331  Sum_probs=44.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|||++ ||+|++|||+++.  +|.| +..++....++++.|+|.|.
T Consensus        43 V~~~spA~~aGL~~-GD~Il~InG~~v~~~~~~d-~~~~i~~~~~~~v~l~V~~~   95 (111)
T 1vae_A           43 LDPHCSASLAGAKE-GDYIVSIQGVDCKWLTVSE-VMKLLKSFGGEEVEMKVVSL   95 (111)
T ss_dssp             CCTTSSHHHHHCCT-TCEEEEETTEECSSCCHHH-HHHHHHHTTTSEECEEEECE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCceEEEEEEec
Confidence            56899999999999 9999999999999  8855 66788777777899999873

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.08  E-value=7.6e-11  Score=77.65  Aligned_cols=49  Identities=22%  Similarity=0.226  Sum_probs=40.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHh--CCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKN--GIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~--~~~~~v~l~v~   51 (163)
                      |.+||||++|||++ ||+|++|||++|.  +|+| +..++..  ..++++.|.|.
T Consensus        46 V~~gSpA~~AGL~~-GD~I~~Ing~~v~~~s~~d-v~~~i~~~~~~g~~v~LLV~   98 (101)
T 3qik_A           46 VQRGSLAEVAGLQV-GRKIYSINEDLVFLRPFSE-VESILNQSFCSRRPLRLLVA   98 (101)
T ss_dssp             ECTTSHHHHHTCCT-TCBEEEETTEESTTSCHHH-HHHHHHHHHHTTCCEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEEcCcCCHHH-HHHHHHHhhccCCeEEEEEe
Confidence            56899999999999 9999999999974  8855 6677765  46788888775

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=2.6e-10  Score=73.65  Aligned_cols=52  Identities=17%  Similarity=0.378  Sum_probs=42.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +.+..++.. .+..+.++|.|.+
T Consensus        31 V~~~spA~~aGl~~-GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~   83 (91)
T 2f5y_A           31 VDSGGPAERAGLQQ-LDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMV   83 (91)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999999 9999999999999762 334555655 3457999999965

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=1.6e-10  Score=76.22  Aligned_cols=51  Identities=27%  Similarity=0.370  Sum_probs=43.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  +.+ +..++...++ .+.++|.|.+
T Consensus        46 V~~~spA~~aG~l~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~-~v~l~v~r~~   99 (103)
T 2fcf_A           46 VLEDSPAGKNGTLKP-GDRIVEVDGMDLRDASHEQ-AVEAIRKAGN-PVVFMVQSII   99 (103)
T ss_dssp             ECSSSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHTCCS-SEEEEEECCC
T ss_pred             eCCCCcHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCC-cEEEEEEECC
Confidence            46899999999 999 99999999999998  644 6677776544 8999999865

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.08  E-value=2.5e-10  Score=73.22  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=39.3

Q ss_pred             CCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHH-hCCCCeEEEEEEECC
Q psy18011          3 DNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLK-NGIDKELKMAVYSSK   54 (163)
Q Consensus         3 ~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~-~~~~~~v~l~v~r~~   54 (163)
                      ++|||+ |||++ ||+|++|||+++.+|  .+ +..++. ...++++.++|.|++
T Consensus        35 ~~spA~-aGl~~-GD~I~~vng~~v~~~~~~~-~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           35 VDSPRS-RGLKE-GDLIVEVNKKNVQALTHNQ-VVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             CC--CC-TTCCT-TCEEEEETTEECTTSCHHH-HHHHHHTSCTTCEEEEEEEEEC
T ss_pred             cCChhH-hCCCC-CCEEEEECCEEcCCCCHHH-HHHHHHhCCCCCEEEEEEEeCC
Confidence            799999 99999 999999999999998  44 555565 356789999999865

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.08  E-value=1.4e-10  Score=79.51  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             CCCCChhhhcCC-ccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          1 VQDNSPGQKAGL-EAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL-~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      |.++|||++||| ++ ||+|++|||+++.+  +.+ +..++....++.+.+++.|++.  ..++.+.+
T Consensus        40 V~~~spA~~aGll~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~g~~v~l~v~R~g~--~~~~~~~~  103 (127)
T 1b8q_A           40 LIRGGAAEQSGLIQA-GDIILAVNDRPLVDLSYDS-ALEVLRGIASETHVVLILRGPE--GFTTHLET  103 (127)
T ss_dssp             CSSSSSHHHHSSCCT-TTCCCEETTEECSSSCHHH-HHHHHHSCCSSCEEEEEECCCC--SEEECCCC
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCeEEEEEEeCCc--eEEEEEEE
Confidence            568999999999 99 99999999999998  754 6677776677899999999874  35555443

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.08  E-value=2.2e-10  Score=76.08  Aligned_cols=52  Identities=15%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+ |||++ ||+|++|||+++.+|.+..........++++.++|.|++
T Consensus        46 V~~~spA~-agl~~-GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   97 (107)
T 2h2b_A           46 VLKGGPAE-GQLQE-NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKK   97 (107)
T ss_dssp             ECTTSTTB-TTBCT-TCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEES
T ss_pred             ECCCCchh-hCCCC-CCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECC
Confidence            46899999 99999 999999999999999653333333456788999999865

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.08  E-value=3.5e-10  Score=73.43  Aligned_cols=51  Identities=20%  Similarity=0.424  Sum_probs=41.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|  .+ +..++.. .+..+.+.+.|.+
T Consensus        36 v~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~~-~~~~~~~~~~r~~   88 (95)
T 3r68_A           36 IEPGSPAEAAGLKN-NDLVVAVNGKSVEALDHDG-VVEMIRK-GGDQTTLLVLDKE   88 (95)
T ss_dssp             CCTTSHHHHHTCCT-TEEEEEETTEECTTCCHHH-HHHHHHT-TTTEEEEEEEECC
T ss_pred             ECCCCHHHHCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHh-CCCeEEEEEECCc
Confidence            57899999999999 999999999999998  44 5566666 3456666666654

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.08  E-value=2.9e-10  Score=74.20  Aligned_cols=51  Identities=22%  Similarity=0.388  Sum_probs=41.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC-hHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD-NDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|||++ ||+|++|||+++.++ .+.+..++...+ .++.|+|.+.
T Consensus        44 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~   95 (96)
T 2ego_A           44 VHESSPAQLAGLTP-GDTIASVNGLNVEGIRHREIVDIIKASG-NVLRLETLYG   95 (96)
T ss_dssp             ECTTCHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEEECC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEEC
Confidence            46899999999999 999999999999995 244667777664 4899988763

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.08  E-value=2.1e-10  Score=76.40  Aligned_cols=52  Identities=17%  Similarity=0.318  Sum_probs=43.1

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +.+..++.. .+..+.|+|.|++
T Consensus        51 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~  104 (108)
T 2jre_A           51 LIPGSAAALDGRIEP-NDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRRL  104 (108)
T ss_dssp             ECTTSHHHHHSSCCS-SEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEECC
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999962 335556655 5688999999976

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=1.2e-10  Score=78.76  Aligned_cols=53  Identities=19%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+....+.....++++.|+|.|++
T Consensus        49 V~~~spA~~aGL~~-GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~  101 (117)
T 1uit_A           49 VTVGSIAHQAGLEY-GDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNP  101 (117)
T ss_dssp             ECTTSHHHHHTCCT-TCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCS
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            46899999999999 999999999999999653333333456788999999876

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.07  E-value=3e-10  Score=77.37  Aligned_cols=53  Identities=15%  Similarity=0.370  Sum_probs=44.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +.+..++... .+.++.|+|.|++
T Consensus        65 V~~gspA~~aG~L~~-GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           65 ILPRGAAIQDGRLKA-GDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             ECTTSHHHHHTCCCS-SSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            46899999999 999 9999999999999862 3455677664 4789999999865

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.07  E-value=2e-10  Score=74.72  Aligned_cols=52  Identities=12%  Similarity=0.250  Sum_probs=41.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++.. ....++.. .+..+.+++.|++
T Consensus        36 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   89 (95)
T 2vwr_A           36 LLEGGLAAQDGRLSS-NDRVLAINGHDLKYGTPELAAQIIQA-SGERVNLTIARPG   89 (95)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEEES
T ss_pred             eCCCChHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCC
Confidence            46899999999 999 99999999999987532 23334443 4688999999965

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=3.1e-10  Score=74.68  Aligned_cols=52  Identities=19%  Similarity=0.204  Sum_probs=42.7

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++| ||++ ||+|++|||+++.++.+....++... ++.+.|+|.|++
T Consensus        42 V~~~spA~~agGL~~-GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~~   94 (100)
T 2edp_A           42 IEDGGKAALSQKMRT-GDELVNINGTPLYGSRQEALILIKGS-FRILKLIVRRRN   94 (100)
T ss_dssp             CCTTSHHHHHTSCCT-TCEEEEETTEECCSCSHHHHHHHHTC-CSSCEEEEEECC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEEccchHHHHHHHHHhC-CCeEEEEEEeCC
Confidence            5789999999 9999 99999999999998634355555543 578899999975

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.06  E-value=2.8e-10  Score=75.21  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=42.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||++|||++ ||+|++|||+++.+.. +.+...+....++.+.++|.|
T Consensus        52 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R  103 (104)
T 3sfj_A           52 VSEGGPAEIAGLQI-GDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR  103 (104)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEE
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEc
Confidence            46899999999999 9999999999997642 235566666667889999987

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.06  E-value=3.7e-10  Score=73.19  Aligned_cols=52  Identities=23%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++... +..+.|+|.|++
T Consensus        40 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~g   93 (94)
T 2fe5_A           40 IIEGGAAQKDGRLQI-GDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKPG   93 (94)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence            46899999999 999 9999999999999873 2234445443 358999998864

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.05  E-value=2.9e-10  Score=75.40  Aligned_cols=52  Identities=23%  Similarity=0.463  Sum_probs=43.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +.+..++.. .+.++.++|.|++
T Consensus        33 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~   85 (106)
T 3ngh_A           33 IEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDGD   85 (106)
T ss_dssp             CCTTSHHHHTTCCT-TCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEEEECHH
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEECC
Confidence            57899999999999 9999999999999985 135556653 5678999999865

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.05  E-value=4.2e-10  Score=75.25  Aligned_cols=53  Identities=15%  Similarity=0.386  Sum_probs=43.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +.+..++... .+..+.|+|.|++
T Consensus        46 V~~~spA~~aG~l~~-GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  101 (111)
T 2koj_A           46 ILPRGAAIQDGRLKA-GDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE  101 (111)
T ss_dssp             ECSSSHHHHHCSSCT-TCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred             ECCCChHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998762 3355677654 4789999999976

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.05  E-value=8.8e-11  Score=78.45  Aligned_cols=52  Identities=13%  Similarity=0.318  Sum_probs=42.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhC--CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNG--IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~--~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |.+ ...++...  ..+.+.|+|.|.+
T Consensus        40 V~~~spA~~aG~L~~-GD~Il~Vng~~v~~~~~~~-~~~~l~~~~~~~~~v~l~v~R~~   96 (108)
T 3cbz_A           40 IMKGGAVAADGRIEP-GDMLLQVNDMNFENMSNDD-AVRVLRDIVHKPGPIVLTVAKSG   96 (108)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEETTSCCHHH-HHHHHHHHHTSSSCEEEEEECCC
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhcccCCCeEEEEEEeCC
Confidence            46899999999 999 99999999999998  644 55666544  3456999999865

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.6e-10  Score=79.32  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=42.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQ   56 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~   56 (163)
                      |.++|||++|||++ ||+|++|||+++.++.+  ..++. ...++.+.|+|.|++..
T Consensus        53 V~~~spA~~aGL~~-GD~I~~vng~~v~~~~~--~~~~~~~~~~~~v~l~v~R~g~~  106 (128)
T 1uf1_A           53 VDPGSEAEGSGLKV-GDQILEVNGRSFLNILH--DEAVRLLKSSRHLILTVKDVGRL  106 (128)
T ss_dssp             ECTTCHHHHHTCCT-TCEEEEETTEECSSCCH--HHHHHHHTTCSEEEEEEECCSCC
T ss_pred             ECCCCHHHHCCCCC-CCEEEEECCEECCCCCH--HHHHHHHhcCCeEEEEEEECCcc
Confidence            46899999999999 99999999999999853  23332 23357899999998743

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=78.19  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=43.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC---CChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD---QDNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~---~~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|| |++ ||+|++|||+++.   +|.+ ...++.. .+..+.|+|.|++.
T Consensus        56 V~~~spA~~aG~l~~-GD~Il~ing~~v~~~~~~~~-~~~~l~~-~~~~v~l~v~R~~~  111 (117)
T 2o2t_A           56 IQEGSVAHRDGRLKE-TDQILAINGQALDQTITHQQ-AISILQK-AKDTVQLVIARGSL  111 (117)
T ss_dssp             CCTTSHHHHHCCCCT-TCEEEEETTEECCTTSCHHH-HHHHHHH-CCSEEEEEEESSCC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCCHHH-HHHHHHc-CCCEEEEEEEeCCc
Confidence            57899999999 999 9999999999998   7754 5566655 56789999999763

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.04  E-value=1.6e-10  Score=78.75  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=44.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCC-CCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGI-DKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~-~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |.+ +..++.... ++++.|+|.|++
T Consensus        52 V~~~spA~~aG~L~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~g~~v~l~v~R~~  107 (122)
T 1v5q_A           52 IEADSPAERCGVLQI-GDRVMAINGIPTEDSTFEE-ANQLLRDSSITSKVTLEIEFDV  107 (122)
T ss_dssp             ECTTSHHHHSCCCCT-TCCEEEETTEESSSSCHHH-HHHHHHHHTTTTCEEEEEEEEC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCCeEEEEEEECC
Confidence            46899999999 999 99999999999987  854 667776544 789999999965

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=3.9e-10  Score=74.11  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=41.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +.+...+..  +.++.|+|+|++
T Consensus        43 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g   94 (100)
T 2eeh_A           43 VEEGSSAERAGLCV-GDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMG   94 (100)
T ss_dssp             ECTTSHHHHHTCCS-SCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECS
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECC
Confidence            46899999999999 9999999999999962 123333433  688999999976

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.04  E-value=3e-10  Score=74.19  Aligned_cols=51  Identities=18%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC-ChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ-DNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~-~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.+ +.+....++. ..++++.|+|.|.
T Consensus        38 V~~~spA~~aG~L~~-GD~I~~Ing~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~   90 (96)
T 2qkv_A           38 LIQGQYPEIDSKLQR-GDIITKFNGDALEGLPFQVSYALFK-GANGKVSMEVTRP   90 (96)
T ss_dssp             ECTTSCHHHHHHCCT-TCEEEEETTEECTTCCHHHHHHHHH-TCSSEEEEEEECC
T ss_pred             eCCCChHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHh-cCCCcEEEEEEeC
Confidence            46899999999 999 99999999999987 4333333444 3456799999985

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.04  E-value=2.4e-10  Score=75.02  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=41.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |++ +..++... ++++.|+|.+.
T Consensus        43 V~~gspA~~aG~L~~-GD~Il~ING~~v~~~~~~~-~~~~l~~~-~~~v~L~V~~~   95 (97)
T 2ejy_A           43 ILHGGMIHRQGSLHV-GDEILEINGTNVTNHSVDQ-LQKAMKET-KGMISLKVIPN   95 (97)
T ss_dssp             ECSSSHHHHHTCCCT-TCEEEEETTBCCCSSCSHH-HHHHHHHC-CEEEEEEEECC
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCeEEEEEEEC
Confidence            46899999999 999 99999999999996  854 66777765 46788888753

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.04  E-value=1.7e-10  Score=74.32  Aligned_cols=51  Identities=12%  Similarity=0.240  Sum_probs=40.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCC-CCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGI-DKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~-~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.  ++.+ +..++.... +.++.++|.|.
T Consensus        34 V~~~spA~~aG~L~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           34 IVPLGAADTDGRLRS-GDELISVDGTPVIGKSHQL-VVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTSCHHH-HHHHHHHHHHHTEEEEEEEEC
T ss_pred             ECCCChHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCCeEEEEEEec
Confidence            46899999999 999 9999999999995  4543 555665433 35899999885

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.03  E-value=4.1e-09  Score=88.21  Aligned_cols=117  Identities=19%  Similarity=0.201  Sum_probs=78.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH---------HHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCC--
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND---------TLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNS--   68 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d---------~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~--   68 (163)
                      |.|+|||++| |++ ||+|++|||++|.+..+         .+..++. ..+|+++.++|+|+|+.++.++++.+...  
T Consensus       284 V~~~spA~~a-l~~-GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~  361 (539)
T 4fln_A          284 VEPTSDASKV-LKE-GDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLV  361 (539)
T ss_dssp             ECTTSGGGGT-CCT-TCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCCCCSS
T ss_pred             ccCCChHHhC-ccC-CCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEccCcccc
Confidence            5689999987 999 99999999999977543         1345554 57889999999999955555555543211  


Q ss_pred             ----CCC----cceeeeEEeeeccc---------------------------------------c----cc-cceEEEee
Q psy18011         69 ----WGG----QGLLGVSIRFCSFE---------------------------------------G----AN-ENVWHILD   96 (163)
Q Consensus        69 ----~~~----~~~lGl~~~~~~~~---------------------------------------~----~~-~~~~~I~~   96 (163)
                          ...    ....|+........                                       +    .+ .++..|++
T Consensus       362 ~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~  441 (539)
T 4fln_A          362 PYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLK  441 (539)
T ss_dssp             CSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEE
T ss_pred             ccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeehhhhhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEe
Confidence                000    12346554321100                                       0    00 12446888


Q ss_pred             eCc------hHHHHHHHccCCCeEEEEEE
Q psy18011         97 QDN------DTLKELLKNGIDKELKMAVY  119 (163)
Q Consensus        97 v~~------~~l~~~v~~~~~~~v~l~v~  119 (163)
                      ||+      ++|.+++++..++.+.|...
T Consensus       442 vNg~~V~s~~~l~~~l~~~k~~~l~~~~~  470 (539)
T 4fln_A          442 FNGIPIRNIHHLAHLIDMCKDKYLVFEFE  470 (539)
T ss_dssp             ETTEECCSHHHHHHHHHTCCSSEEEEEET
T ss_pred             ECCEEcCCHHHHHHHHHHcCCCeEEEEEC
Confidence            888      89999999988888888763

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.03  E-value=5.3e-10  Score=73.79  Aligned_cols=52  Identities=15%  Similarity=0.262  Sum_probs=40.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChHH-HHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDT-LKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~-~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++... ....+. ..++.+.+++.|++
T Consensus        42 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~   95 (104)
T 3i4w_A           42 ILAGGPADLSGELRK-GDQILSVNGVDLRNASHEQAAIALK-NAGQTVTIIAQYKP   95 (104)
T ss_dssp             ECTTSHHHHHCCCCT-TEEEEEETTEECTTCCHHHHHHHHH-TSCSEEEEEEEECH
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECc
Confidence            46899999999 999 999999999999876532 222333 35678999999863

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=4.3e-10  Score=74.11  Aligned_cols=52  Identities=21%  Similarity=0.438  Sum_probs=42.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +.+..++.. .+.++.+++.|.+
T Consensus        37 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~   89 (102)
T 2d90_A           37 IEPGSPAEAAGLKN-NDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE   89 (102)
T ss_dssp             CCTTSTTTTTTCCT-TCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTT
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence            56899999999999 9999999999999862 345556655 4678999998864

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=3.2e-10  Score=73.35  Aligned_cols=49  Identities=14%  Similarity=0.253  Sum_probs=40.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||++|||++ ||+|++|||+++.  +|.+ +..++... ++.+.|+|.+
T Consensus        38 V~~~spA~~aGL~~-GD~Il~Ing~~v~~~~~~~-~~~~l~~~-g~~v~l~v~p   88 (90)
T 1y7n_A           38 LMRGGIAERGGVRV-GHRIIEINGQSVVATPHEK-IVHILSNA-VGEIHMKTMP   88 (90)
T ss_dssp             ECTTSHHHHHTCCS-SCEEEEETTEECTTSCHHH-HHHHHHHC-CEEEEEEEEC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCeEEEEEEE
Confidence            46899999999999 9999999999994  6754 66777654 6788888875

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.2e-10  Score=74.93  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++.. .+..+.|+|.|++
T Consensus        45 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g   98 (104)
T 2djt_A           45 LLKDGPAQRCGRLEV-GDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPL   98 (104)
T ss_dssp             ECTTCHHHHHCSCCT-TCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            46899999999 999 9999999999999863 234455555 5688999999865

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.02  E-value=2e-10  Score=78.92  Aligned_cols=51  Identities=18%  Similarity=0.360  Sum_probs=44.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHh-CCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKN-GIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~-~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.  +|.+ +..++.. ..++++.|+|.|+
T Consensus        56 V~~gspA~~aG~L~~-GD~Il~VnG~~v~~~s~~d-~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           56 LINKGAAASDGILQP-GDVLISVGHANVLGYTLRE-FLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             CCTTSSGGGCSSSCT-TCBEEEESSSCCTTCCHHH-HHHHHTSCCSSCEEEEEEESS
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEEcCCCCHHH-HHHHHhcCCCCCEEEEEEEEC
Confidence            57899999999 999 9999999999995  7754 6677775 4678999999986

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.02  E-value=6.7e-10  Score=72.27  Aligned_cols=52  Identities=15%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++.. .+..+.|+|.|++
T Consensus        40 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~   93 (96)
T 1d5g_A           40 VIPQGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQ   93 (96)
T ss_dssp             ECTTSHHHHTTCCCT-TCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCS
T ss_pred             eCCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence            46899999999 999 9999999999999652 224455554 5688999999864

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.02  E-value=4.4e-10  Score=72.60  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+.. +....++.. .++++.|+|.|.+
T Consensus        36 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~   89 (92)
T 2qg1_A           36 IVKGGIADADGRLMQ-GDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS   89 (92)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence            46899999999 999 9999999999998742 334444544 4567999999864

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.02  E-value=4.9e-10  Score=74.63  Aligned_cols=52  Identities=19%  Similarity=0.210  Sum_probs=40.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC-ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ-DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~-~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+ +.+....++. ..++++.++|.|..
T Consensus        32 V~~gspA~~aG~L~~-GD~Il~Ing~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~   85 (106)
T 2la8_A           32 LIQGQYPEIDSKLQR-GDIITKFNGDALEGLPFQVCYALFK-GANGKVSMEVTRPK   85 (106)
T ss_dssp             CCTTSCHHHHTTCCT-TCEEEEESSCBCSSSCHHHHHHHHH-SCBSCEEEEEEECC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHh-CCCCeEEEEEEeCC
Confidence            57899999999 999 99999999999987 3333333343 34467999999853

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1.5e-10  Score=76.24  Aligned_cols=51  Identities=29%  Similarity=0.353  Sum_probs=41.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ . .++. ...++++.++|.|++
T Consensus        42 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~-~-~~~~~~~~~~~v~l~v~R~g   93 (101)
T 1uez_A           42 VEPGSLAEKEGLRV-GDQILRVNDKSLARVTH-A-EAVKALKGSKKLVLSVYSAG   93 (101)
T ss_dssp             ECTTSHHHHHTCCS-SCCEEEETTEECSSCCH-H-HHHHHSSSSSSCCEEECCCC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCcCH-H-HHHHhhcCCCeEEEEEEECC
Confidence            46899999999999 99999999999999965 3 3333 344567889998865

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.02  E-value=6.2e-10  Score=75.36  Aligned_cols=53  Identities=11%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|.+.....+....++.+.+++.|.+
T Consensus        45 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   98 (119)
T 1tp5_A           45 ILAGGPADLSGELRK-GDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP   98 (119)
T ss_dssp             ECTTSHHHHHSCCCT-TEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            46899999999 999 999999999999999643322233345678999999854

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.02  E-value=5.3e-10  Score=72.08  Aligned_cols=53  Identities=21%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +.+..++...++..+.+.+.|++
T Consensus        34 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~   87 (91)
T 1g9o_A           34 VEPGSPAEKAGLLA-GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             ECCCCHHHHCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence            46899999999999 9999999999999842 33556666555444455555543

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.01  E-value=5.6e-10  Score=75.09  Aligned_cols=52  Identities=23%  Similarity=0.477  Sum_probs=43.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +.+..++... ++++.|+|.|++
T Consensus        45 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~   97 (114)
T 2edz_A           45 IEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKS-GNSVTLLVLDGD   97 (114)
T ss_dssp             CCTTCTTGGGTCCT-TCEEEEESSSBCSSSCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence            57899999999999 9999999999999861 2355566553 789999999965

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.01  E-value=7e-10  Score=73.97  Aligned_cols=50  Identities=18%  Similarity=0.371  Sum_probs=41.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|||++ ||+|++|||+++.+|  .+ +..++... ++.+.|+|.|.
T Consensus        52 V~~~spA~~aGl~~-GD~I~~vng~~v~~~~~~~-~~~~l~~~-~~~v~l~v~~~  103 (109)
T 1q3o_A           52 VDEGGVAWRAGLRM-GDFLIEVNGQNVVKVGHRQ-VVNMIRQG-GNTLMVKVVMV  103 (109)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHH-HHHHHHHT-TTEEEEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhC-CCEEEEEEEEC
Confidence            46899999999999 999999999999999  55 44566554 56788988874

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.01  E-value=7.8e-10  Score=74.47  Aligned_cols=52  Identities=19%  Similarity=0.379  Sum_probs=42.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++.... ..+.|+|.|++
T Consensus        50 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~  103 (116)
T 2dm8_A           50 VYEEGAAARDGRLWA-GDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDE  103 (116)
T ss_dssp             CCSSSHHHHHTCCCT-TCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECCS
T ss_pred             ECCCChHHhCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeCC
Confidence            57899999999 999 9999999999999862 33445555444 78999999976

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.01  E-value=6.1e-10  Score=73.19  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=41.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++.. .+..+.|+|.|++
T Consensus        44 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   97 (101)
T 2jik_A           44 IKENGAAALDGRLQE-GDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHRL   97 (101)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEES
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999873 223345544 3678999999865

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=8.8e-11  Score=78.52  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=45.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. .....++.. .+..+.|+|.|++  +..++.+.|.
T Consensus        43 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~--~~~~~~v~~~  106 (110)
T 1um1_A           43 LLPGSPAAADGRLSL-GDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSD--VETAKKIHSG  106 (110)
T ss_dssp             ECTTSHHHHHSCCCT-TCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCC--HHHHHHHSSC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC--cceeEEEEec
Confidence            46899999999 999 9999999999998642 223344444 4688999999976  3334444443

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=5.6e-10  Score=75.61  Aligned_cols=51  Identities=24%  Similarity=0.334  Sum_probs=41.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.  ++.+ ...++...+ .++.|+|.|++
T Consensus        60 V~~~spA~~aG~L~~-GD~Il~Vng~~v~~~~~~~-~~~~l~~~~-~~v~l~v~R~g  113 (117)
T 2fne_A           60 VFAKGAASEDGRLKR-GDQIIAVNGQSLEGVTHEE-AVAILKRTK-GTVTLMVLSSD  113 (117)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHHCC-SSEEEEEEECS
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcCC-CeEEEEEEeCC
Confidence            46899999999 999 9999999999999  6643 556666544 45999999976

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=2.4e-10  Score=75.56  Aligned_cols=52  Identities=17%  Similarity=0.286  Sum_probs=42.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCC-CCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGI-DKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~-~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  +. .+..++.... +..+.|+|.|++
T Consensus        41 V~~~spA~~aG~L~~-GD~Il~ing~~v~~~~~~-~~~~~l~~~~~g~~v~l~v~R~~   96 (103)
T 1uep_A           41 VIAMGSADRDGRLHP-GDELVYVDGIPVAGKTHR-YVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             ECTTSTTGGGTCCCT-TCEEEEETTEECTTSCHH-HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             eCCCChHHhCCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHhCCCCCcEEEEEEeCC
Confidence            46899999999 999 99999999999976  53 3556665543 688999999865

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.00  E-value=5e-10  Score=76.53  Aligned_cols=51  Identities=27%  Similarity=0.361  Sum_probs=42.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  +.+ +..++...+ .++.|+|.|..
T Consensus        66 V~~~spA~~aG~L~~-GD~Il~Vng~~v~~~~~~~-~~~~l~~~~-~~v~l~v~r~~  119 (123)
T 2iwq_A           66 VLEDSPAGKNGTLKP-GDRIVEVDGMDLRDASHEQ-AVEAIRKAG-NPVVFMVQSII  119 (123)
T ss_dssp             ECSSSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHHCC-SSEEEEEECCC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcCC-CeEEEEEEECC
Confidence            46899999999 999 99999999999988  644 667776654 48999998864

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.00  E-value=4.7e-10  Score=74.26  Aligned_cols=50  Identities=26%  Similarity=0.425  Sum_probs=42.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+  +.+ +..++..  ++.+.|+|.|+.
T Consensus        48 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~-~~~~l~~--~~~v~l~v~r~~   99 (104)
T 1wi2_A           48 VIPDSDAHRAGLQE-GDQVLAVNDVDFQDIEHSK-AVEILKT--AREISMRVRFFS   99 (104)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECSSCCHHH-HHHHHHH--SSSEEEEEECCC
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHhC--CCEEEEEEEECC
Confidence            46899999999999 99999999999998  744 5566665  578999998854

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.00  E-value=1.1e-09  Score=70.46  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=39.2

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||++| ||++ ||+|++|||+++.++.. ....++.. .+.++.++|.|
T Consensus        37 V~~~spA~~aggl~~-GD~I~~ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~r   88 (90)
T 1qav_A           37 IFKGLAADQTEALFV-GDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKY   88 (90)
T ss_dssp             ECTTSHHHHTTCCCT-TEEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred             ECCCCHHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence            4689999999 9999 99999999999987532 23344444 35779999887

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.99  E-value=7.5e-10  Score=87.35  Aligned_cols=60  Identities=27%  Similarity=0.443  Sum_probs=50.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.+ +...+..  ++++.|+|+|++  +.+++++.+.
T Consensus       263 V~~~spA~~aGl~~-GDvI~~ing~~v~~~~~-l~~~l~~--~~~v~l~v~R~g--~~~~~~v~~~  322 (325)
T 1lcy_A          263 VILGSPAHRAGLRP-GDVILAIGEQMVQNAED-VYEAVRT--QSQLAVQIRRGR--ETLTLYVTPE  322 (325)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECCSHHH-HHHHHTT--CSSEEEEEEETT--EEEEEEECCE
T ss_pred             eCcCChHHHCCCCC-CCEEEEECCEEcCCHHH-HHHHHhC--CCeEEEEEEECC--EEEEEEEEEe
Confidence            46899999999999 99999999999999965 6666654  478999999988  6667766543

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=4.3e-10  Score=74.11  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=41.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++. ..+..+.|+|.|++
T Consensus        43 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~   96 (103)
T 1wfv_A           43 LAEDGPAIRNGRMRV-GDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRGT   96 (103)
T ss_dssp             BCTTSHHHHHCSSCT-TCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECTT
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECC
Confidence            46899999999 999 9999999999999863 22334444 34678999999875

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=9.4e-10  Score=75.03  Aligned_cols=53  Identities=19%  Similarity=0.337  Sum_probs=43.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +.+..++... .+..+.|+|.|++
T Consensus        51 V~~~spA~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  106 (123)
T 1ueq_A           51 VIPDGPAAQDGKMET-GDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             ECTTSHHHHTSCCCT-TCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998532 3466677665 3789999999964

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.98  E-value=7.1e-10  Score=88.27  Aligned_cols=61  Identities=21%  Similarity=0.435  Sum_probs=49.4

Q ss_pred             CCCCChhhhcCCccC----------CeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAF----------FDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~----------GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~   64 (163)
                      |.++|||++|||++.          ||+|++|||++|.+|.| +...+. ..+++++.++|+|++..  +++++.
T Consensus       258 V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~d-l~~~l~~~~~g~~v~l~v~R~g~~--~~~~v~  329 (348)
T 3qo6_A          258 APPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSD-LYRILDQCKVGDEVTVEVLRGDHK--EKISVT  329 (348)
T ss_dssp             CCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHH-HHHHHTTCCTTCEEEEEEECSSSE--EEEEEE
T ss_pred             ecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHH-HHHHHHhCCCcCEEEEEEEECCEE--EEEEEE
Confidence            578999999999962          89999999999999965 666664 46678999999998844  454444

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=7.6e-10  Score=73.33  Aligned_cols=51  Identities=14%  Similarity=0.338  Sum_probs=41.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  +. ....++... +..+.|+|.|++
T Consensus        45 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~-~~~~~l~~~-g~~v~l~v~R~~   98 (105)
T 1wha_A           45 IAEGGAAHRAGTLQV-GDRVLSINGVDVTEARHD-HAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CCTTSSHHHHSSCCT-TCEEEEESSCBCTTCCHH-HHHHHHTSC-CSCEEEEEEECC
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHcC-CCeEEEEEEECC
Confidence            57899999999 999 99999999999988  53 344555544 677999999964

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.97  E-value=1.6e-10  Score=77.60  Aligned_cols=52  Identities=15%  Similarity=0.338  Sum_probs=41.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++... +..+.|+|.|++
T Consensus        42 V~~~s~A~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~   95 (113)
T 2g5m_B           42 VTEGGAAHRDGRIQV-NDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIGRER   95 (113)
T ss_dssp             CCTTSHHHHHTCSCT-TCBEEEETTEECSSCCHHHHHHHHHHS-CSSCEEEEEECC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Confidence            57899999999 999 9999999999998643 2233445443 688999999976

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.97  E-value=9.9e-10  Score=73.70  Aligned_cols=52  Identities=17%  Similarity=0.332  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++.. .+.++.|+|.|++
T Consensus        56 V~~~spA~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~  109 (112)
T 2r4h_A           56 LAEDGPAERSGKMRI-GDEILEINGETTKNMKHSRAIELIKN-GGRRVRLFLKRGE  109 (112)
T ss_dssp             ECTTSHHHHTTCCCT-TCEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEECCE
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998863 223344444 5678999999864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.97  E-value=5.4e-09  Score=90.45  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=74.1

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECCCc--eEEEEEEccCCCCCCcceee
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSKTQ--DVRTVNITPSNSWGGQGLLG   76 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~~~--~~~~v~~~~~~~~~~~~~lG   76 (163)
                      |.+||||++|| |++ ||+|++|||+++.+|.. ....++.. .+..+.|+|.|.+..  ..+++++...     ...||
T Consensus        96 v~~gspA~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~~~~~~~v~l~k~-----~~~lG  168 (721)
T 2xkx_A           96 IIPGGAAAQDGRLRV-NDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRRKPPAEKVMEIKLIKG-----PKGLG  168 (721)
T ss_pred             eCCCCHHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEecccccccceeeeeeee-----cCCCc
Confidence            46899999999 999 99999999999999852 22344433 467899999987532  2344554422     11244


Q ss_pred             eEEee-----------------ecccc----cc--cceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCC
Q psy18011         77 VSIRF-----------------CSFEG----AN--ENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKT  123 (163)
Q Consensus        77 l~~~~-----------------~~~~~----~~--~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~  123 (163)
                      +.+..                 ....+    ++  ..|-.|++||+        .++.++++. .++.+.|.|.|++.
T Consensus       169 ~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~V~R~g~  245 (721)
T 2xkx_A          169 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPSN  245 (721)
T ss_pred             eeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence            44321                 00001    11  11235999998        456777765 57899999998543

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.96  E-value=1.1e-09  Score=69.62  Aligned_cols=50  Identities=12%  Similarity=0.205  Sum_probs=40.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||++|||++ ||+|++|||+.+.... +....++. ..+.++.|+|..
T Consensus        30 v~~gspA~~aGl~~-GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p   80 (82)
T 1r6j_A           30 IVKDSSAARNGLLT-EHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP   80 (82)
T ss_dssp             ECTTSHHHHHTCCS-SEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred             ecCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence            46899999999999 9999999999997754 34556676 466788888864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.96  E-value=8.4e-10  Score=72.63  Aligned_cols=52  Identities=13%  Similarity=0.245  Sum_probs=41.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+.. +....++.. .+..+.|+|.|++
T Consensus        41 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   94 (102)
T 2i1n_A           41 IIPGGAAAMDGRLGV-NDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRRQ   94 (102)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998732 224445544 5688999999965

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.96  E-value=7.8e-10  Score=71.65  Aligned_cols=51  Identities=8%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEec--CCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRL--DQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v--~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++  .+|.+ +..++....+ .+.|+|.+..
T Consensus        35 v~~gspA~~aG~L~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~-~v~l~v~~~~   88 (93)
T 3o46_A           35 IMRGGAADRSGLIHV-GDELREVNGIPVEDKRPEE-IIQILAQSQG-AITFKIIPGS   88 (93)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEESTTSCHHH-HHHHHHHCCE-EEEEEEECC-
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCC-eEEEEEEeCC
Confidence            46899999999 999 999999999999  67754 6677776554 8899988753

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=7.7e-10  Score=74.40  Aligned_cols=52  Identities=19%  Similarity=0.339  Sum_probs=44.0

Q ss_pred             CCCCChhhh-cCCccCCeEEEEECCEecCCC-hHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQK-AGLEAFFDFIVAIDNIRLDQD-NDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~-AGL~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++ |||++ ||+|++|||+++.++ .+.+..++.. .+..+.|+|.|.+
T Consensus        50 V~~~spA~~~agL~~-GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~  103 (114)
T 1uew_A           50 IIDGSPADRCAKLKV-GDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQE  103 (114)
T ss_dssp             ECTTCTTGGGSSCCT-TCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCCS
T ss_pred             ECCCChHHHhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            468999999 99999 999999999999985 2346677766 6789999999865

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=5.8e-10  Score=72.16  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEec-CCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRL-DQDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v-~~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++ .+|.+ +..++... ++++.|+|.|.
T Consensus        36 V~~~spA~~ag~L~~-GD~I~~ing~~v~~~~~~-~~~~l~~~-~~~v~l~v~~~   87 (91)
T 2e7k_A           36 ILHGGMVAQQGLLHV-GDIIKEVNGQPVGSDPRA-LQELLRNA-SGSVILKILSG   87 (91)
T ss_dssp             ECSSSHHHHHCCCCT-TCEEEEETTEECTTCHHH-HHHHHHTC-CSSBCEEEECC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCHHH-HHHHHHcC-CCeEEEEEEEC
Confidence            46899999987 999 999999999999 88854 66777664 56788888874

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.95  E-value=1.4e-09  Score=72.07  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=41.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+.. +....++.. .++.+.|+|.|++
T Consensus        45 V~~~spA~~aG~L~~-GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   98 (106)
T 3axa_A           45 VVKGGAADVDGRLAA-GDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQG   98 (106)
T ss_dssp             EBTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998632 223344444 5788999999976

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.94  E-value=6.6e-10  Score=75.59  Aligned_cols=53  Identities=21%  Similarity=0.213  Sum_probs=41.9

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++| ||++ ||+|++|||+++.++. +....++... +.++.|+|.|++.
T Consensus        60 V~~~spA~~aggL~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~  114 (120)
T 2iwo_A           60 MHPTGVAAQTQKLRV-GDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAGGD  114 (120)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECCTT
T ss_pred             ECCCCHHHHhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence            4689999999 9999 9999999999998863 2234455554 4569999999763

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.94  E-value=1.3e-09  Score=72.47  Aligned_cols=51  Identities=16%  Similarity=0.320  Sum_probs=42.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.  ++.+ ...++.. .+..+.|+|.|++
T Consensus        49 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~-~~~~~~~-~g~~v~l~v~R~~  102 (108)
T 1q7x_A           49 VIPQGAAESDGRIHK-GDRVLAVNGVSLEGATHKQ-AVETLRN-TGQVVHLLLEKGQ  102 (108)
T ss_dssp             ECTTSTHHHHTCCCS-SCEEEEETTEECBSCTTSH-HHHHHHH-TTSEEEEEEECCC
T ss_pred             ECCCChHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998  6644 4455555 3688999999975

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=70.72  Aligned_cols=52  Identities=17%  Similarity=0.294  Sum_probs=41.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++.. .+.++.|+|.|++
T Consensus        40 v~~~s~A~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~g   93 (97)
T 2iwn_A           40 ITKSSAVEHDGRIQI-GDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRRG   93 (97)
T ss_dssp             ECTTCHHHHHCCCCT-TCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEE
T ss_pred             eCCCChHHhCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999873 223344444 6788999998864

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.94  E-value=1.5e-09  Score=70.80  Aligned_cols=48  Identities=33%  Similarity=0.414  Sum_probs=37.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||++|||++ ||+|++|||+++.+++ +++..++.   +.++.++|..
T Consensus        42 V~~~spA~~aGL~~-GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~~   90 (94)
T 3kzd_A           42 VKETGLASKKGLKA-GDEILEINNRAADALNSSMLKDFLS---QPSLGLLVRT   90 (94)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEEe
Confidence            46899999999999 9999999999999642 34555554   3567777754

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.94  E-value=1.5e-09  Score=74.57  Aligned_cols=53  Identities=11%  Similarity=0.216  Sum_probs=43.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCC-CCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI-DKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~-~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +.+..++.... ++.+.|+|.|+.
T Consensus        50 V~~~spA~~aG~L~~-GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  105 (129)
T 2kpk_A           50 LVLDGPAALDGKMET-GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY  105 (129)
T ss_dssp             ECTTSHHHHHSSCCT-TCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998642 34667776654 788999999964

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.94  E-value=1.8e-09  Score=74.56  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=43.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCC-hHHHHHHHHhC-CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQD-NDTLKELLKNG-IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~-~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+. .+.+..++... .+..+.|+|.|++
T Consensus        72 V~~gspA~~aG~L~~-GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           72 VKKGSLADTVGHLRP-GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             ECTTSHHHHTSCCCT-TCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            46899999999 999 999999999999763 13466677654 6789999999865

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.93  E-value=9e-10  Score=72.53  Aligned_cols=51  Identities=12%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             CCCCChhhh-cCCccCCeEEEEECCEec--CCChHHHHHHHHhC-CCCeEEEEEEEC
Q psy18011          1 VQDNSPGQK-AGLEAFFDFIVAIDNIRL--DQDNDTLKELLKNG-IDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~-AGL~~~GD~I~~Ing~~v--~~~~d~~~~~l~~~-~~~~v~l~v~r~   53 (163)
                      |.++|||++ +||++ ||+|++|||+++  .+|.+ +..++... .+..+.|+|.|.
T Consensus        44 V~~~spA~~~ggl~~-GD~I~~Ing~~v~~~~~~~-~~~~l~~~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           44 LLHGGPAERSGALSI-GDRLTAINGTSLVGLPLAA-CQAAVRETKSQTSVTLSIVHC   98 (101)
T ss_dssp             ECTTSTTGGGSSCCT-TCEEEEESSCBCTTSCHHH-HHHHHHHTTTSSEEEEEECCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCCeEEEEEEeC
Confidence            468999999 67999 999999999999  78854 66777664 678899999874

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=1.1e-09  Score=73.52  Aligned_cols=52  Identities=19%  Similarity=0.339  Sum_probs=41.9

Q ss_pred             CCCCChhhhcCC-ccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGL-EAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL-~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++||| ++ ||+|++|||+++.++. +.+..++.... ..+.|+|.|.+
T Consensus        55 V~~~spA~~aGll~~-GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~  108 (113)
T 1va8_A           55 IVKGGAAEKSGLLHE-GDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSS  108 (113)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCC
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            468999999999 99 9999999999999432 34666676544 57899999866

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.93  E-value=6.6e-10  Score=76.28  Aligned_cols=52  Identities=25%  Similarity=0.427  Sum_probs=44.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  +. .+..++.. .+..+.|+|.|++.
T Consensus        53 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~-~~~~~l~~-~~~~v~l~v~R~~~  107 (129)
T 2dmz_A           53 VIPGSAAYHNGHIQV-NDKIVAVDGVNIQGFANH-DVVEVLRN-AGQVVHLTLVRRKT  107 (129)
T ss_dssp             ECTTSHHHHHTCCCS-SCBEEEETTBCCTTCCHH-HHHHHHHH-CCSSEEEEEEEESS
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHc-CCCeEEEEEEeCCc
Confidence            46899999999 999 99999999999998  64 46677766 77889999999763

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.93  E-value=5e-10  Score=75.86  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |. ....++...++..+.+++.|++
T Consensus        49 V~~~spA~~aG~L~~-GD~Il~ing~~v~~~~~~-~~~~~l~~~~~~~~~l~v~R~~  103 (119)
T 1x6d_A           49 VFPNGLASQEGTIQK-GNEVLSINGKSLKGTTHH-DALAILRQAREPRQAVIVTRKL  103 (119)
T ss_dssp             ECSSSHHHHHTSSCT-TCBCCEETTEECSSCCHH-HHHHHHHHTTSSSEEEEEEECC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHhCCCCeEEEEEEcCC
Confidence            46899999999 999 99999999999984  53 3556676667777788898876

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=7.8e-10  Score=73.96  Aligned_cols=52  Identities=19%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCC---CCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGI---DKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~---~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |. ....++....   +.++.+++.|++
T Consensus        48 v~~~s~A~~aG~l~~-GD~Il~Vng~~~~~~~~~-~~~~~l~~~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           48 VIPGGDCYKDGRLKP-GDQLVSINKESMIGVSFE-EAKSIITRAKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             ECTTSHHHHHCSCCT-TCBEEEETTSCCTTCCHH-HHHHHHHHSCCSSSSCEEEEEECCC
T ss_pred             eCCCChHHHCCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHccccCCCceEEEEEEeCC
Confidence            46899999999 999 99999999999987  64 4667777666   788999999865

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.92  E-value=9.1e-10  Score=73.39  Aligned_cols=51  Identities=20%  Similarity=0.248  Sum_probs=42.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |. ....++...++..+.|+|.|.
T Consensus        51 v~~~spA~~aG~L~~-GD~Il~Vng~~v~~~~~~-~~~~~l~~~~~~~v~l~v~R~  104 (108)
T 2d92_A           51 LVADGVAERSGGLLP-GDRLVSVNEYCLDNTSLA-EAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             ECTTCHHHHHTCCCT-TCEEEEESSCBCTTCCHH-HHHHHHHHSCSEEEEEEEECC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHhCCCCeEEEEEEcC
Confidence            46899999999 999 99999999999976  53 466777776666899999884

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.1e-09  Score=74.12  Aligned_cols=51  Identities=20%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEec--CCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRL--DQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v--~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++  .++.+ +..++.. .+..+.|+|.|++
T Consensus        49 V~~~spA~~aG~l~~-GD~Il~Ing~~v~~~~~~~-~~~~l~~-~g~~v~l~v~r~~  102 (117)
T 1v62_A           49 IKPASVVDRSGALHP-GDHILSIDGTSMEHCSLLE-ATKLLAS-ISEKVRLEILPVP  102 (117)
T ss_dssp             CCTTSHHHHHTCCCT-TCBEEEETTEETTSCCHHH-HHHHHHS-CSSEEEEEECCBT
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHh-CCCeEEEEEEECC
Confidence            57899999999 999 999999999999  56744 6667764 6789999999865

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=5.1e-10  Score=76.67  Aligned_cols=51  Identities=24%  Similarity=0.385  Sum_probs=43.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.  ++.+ +..++... +..+.|+|.|.+
T Consensus        68 V~~~spA~~aGL~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~-g~~v~l~v~r~~  120 (126)
T 2yuy_A           68 VKEGGPAFEAGLCT-GDRIIKVNGESVIGKTYSQ-VIALIQNS-DTTLELSVMPKD  120 (126)
T ss_dssp             CCSSSHHHHHTCCS-SCCCCEETTEECSSCCHHH-HHHHHHTC-TTEEEEECCCCC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCEEEEEEEECC
Confidence            56899999999999 9999999999998  7744 66667654 788999998865

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.92  E-value=4.5e-10  Score=76.95  Aligned_cols=52  Identities=25%  Similarity=0.427  Sum_probs=44.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+  +.+ +..++....+..+.+++.|++
T Consensus        40 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~~~-~~~~l~~~~~~~~~l~v~R~g   93 (128)
T 2kjd_A           40 VDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGD-VVSAIRAGGDETKLLVVDRET   93 (128)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHH-HHHHHHTTCSEEEEEEECHHH
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCCCCEEEEEEEeCC
Confidence            46899999999999 99999999999999  754 667777666778889999876

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=72.26  Aligned_cols=52  Identities=12%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +....++.. .+..+.+++.|.+
T Consensus        39 V~~~spA~~aGl~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~   91 (106)
T 2eei_A           39 ITPQGVAMRAGVLA-DDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKE   91 (106)
T ss_dssp             CCTTSHHHHHTCCS-SEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTT
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCc
Confidence            57899999999999 9999999999998763 223344443 3568899998865

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.3e-09  Score=73.80  Aligned_cols=51  Identities=24%  Similarity=0.369  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.  ++.+ ...++... +..+.|+|.|++
T Consensus        61 V~~gspA~~aG~L~~-GD~Il~Vng~~v~~~~~~~-~~~~l~~~-g~~v~l~v~R~~  114 (117)
T 2byg_A           61 IIDGGAAQKDGRLQV-GDRLLMVNNYSLEEVTHEE-AVAILKNT-SEVVYLKVGKPT  114 (117)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHTC-CSEEEEEEEEEE
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCeEEEEEEeCC
Confidence            46899999999 999 9999999999999  5533 45555543 688999999854

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.91  E-value=3.3e-09  Score=86.83  Aligned_cols=61  Identities=16%  Similarity=0.304  Sum_probs=51.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.| +..++...+ +.+.|+|+|++  +.+.+.+.+.
T Consensus       370 V~~~spA~~aGL~~-GD~I~~vng~~v~~~~~-~~~~l~~~~-~~v~l~v~R~g--~~~~~~~~~~  430 (436)
T 4a8c_A          370 VVKGSPAAQAGLQK-DDVIIGVNRDRVNSIAE-MRKVLAAKP-AIIALQIVRGN--ESIYLLMRLE  430 (436)
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhCC-CeEEEEEEECC--EEEEEEEEec
Confidence            46899999999999 99999999999999955 777777644 48999999987  6677776665

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.91  E-value=1.7e-09  Score=71.80  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=40.7

Q ss_pred             CCCCChhhhcC--CccCCeEEEEECCEecCCChH-HHHHHHHhCC---CCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG--LEAFFDFIVAIDNIRLDQDND-TLKELLKNGI---DKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG--L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~---~~~v~l~v~r~   53 (163)
                      |.++|||++||  |++ ||+|++|||+++.+|.. ....++....   +..+.|+|.|+
T Consensus        50 V~~~spA~~aG~rL~~-GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           50 VAPGTPADLCVPRLNE-GDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             ECTTSHHHHSSSCCCT-TCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred             ECCCCchHHcCCccCC-CCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence            46899999999  999 99999999999998743 2344554433   35889998873

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.91  E-value=1.3e-09  Score=73.50  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=40.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEec--CCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRL--DQDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v--~~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++  .+|.+ +..++.... ..+.++|.+.
T Consensus        57 V~~gspA~~aG~L~~-GD~I~~Ing~~v~~~~~~~-~~~~l~~~~-~~v~l~v~~~  109 (114)
T 2gzv_A           57 VFDNTPAALDGTVAA-GDEITGVNGRSIKGKTKVE-VAKMIQEVK-GEVTIHYNKL  109 (114)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHHCC-SEEEEEEECC
T ss_pred             ECCCChHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcCC-CeEEEEEEec
Confidence            46899999999 999 999999999999  78855 667776554 4588888763

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.91  E-value=1.5e-09  Score=72.53  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=42.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +.+..++.. .++.+.|+|.|++
T Consensus        45 V~~~spA~~aG~l~~-GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~   98 (111)
T 2dlu_A           45 IVPGGLADRDGRLQT-GDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDP   98 (111)
T ss_dssp             ECTTSSHHHHTCCCS-SCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999652 334455554 3578999999965

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.8e-09  Score=69.73  Aligned_cols=52  Identities=21%  Similarity=0.360  Sum_probs=40.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++.... .++.|+|.|+.
T Consensus        37 V~~~spA~~aGgl~~-GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~   90 (93)
T 2dkr_A           37 VIPGGVADRHGGLKR-GDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP   90 (93)
T ss_dssp             ECTTSHHHHHCCCCT-TCBEEEETTEECTTSCHHHHHHHHHHCC-SEEEEEECCCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEeCC
Confidence            46899999996 999 9999999999999752 33445555543 57899998754

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.90  E-value=2.3e-09  Score=72.48  Aligned_cols=52  Identities=12%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++.. .++.+.|+|.|++
T Consensus        56 v~~~s~A~~aG~L~~-GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~  109 (117)
T 1ujd_A           56 ILPGGSAEQTGKLME-GMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLDL  109 (117)
T ss_dssp             ECTTCHHHHHSSCCT-TCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESSC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEECC
Confidence            46899999999 999 9999999999998742 334455554 5678999999865

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.90  E-value=1.4e-09  Score=72.26  Aligned_cols=52  Identities=23%  Similarity=0.379  Sum_probs=41.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++.. .+.++.|+|.|++
T Consensus        47 V~~~spA~~aG~L~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~  100 (107)
T 1wf8_A           47 VTEGGAAQRDGRIQV-NDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGREK  100 (107)
T ss_dssp             ECTTCHHHHHCSSCT-TCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred             eCCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999998642 223344544 3688999999864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.90  E-value=2.1e-09  Score=73.66  Aligned_cols=51  Identities=27%  Similarity=0.347  Sum_probs=42.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC---CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD---QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~---~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.   ++.+ ...++.. .+..+.|+|.|+.
T Consensus        61 V~~~spA~~aG~L~~-GD~Il~ing~~v~~~~~~~~-~~~~l~~-~~~~v~l~v~r~~  115 (128)
T 2db5_A           61 VQPGSVADRDQRLKE-NDQILAINHTPLDQNISHQQ-AIALLQQ-TTGSLRLIVAREP  115 (128)
T ss_dssp             CCTTSHHHHTCCCCS-SCBEEEESSCBCSTTSCHHH-HHHHHHH-CCSEEEEEEEECC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCCHHH-HHHHHHc-CCCeEEEEEEcCC
Confidence            57899999999 999 9999999999998   6644 5566665 5688999999964

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.89  E-value=1.9e-09  Score=73.62  Aligned_cols=50  Identities=18%  Similarity=0.267  Sum_probs=40.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+||||++|| |++ ||+|++|||+++.  +|. ....++...++ .+.++|.|.
T Consensus        52 v~~gspA~~aG~L~~-GD~Il~ing~~v~~~~~~-~~~~~l~~~~~-~v~l~v~r~  104 (125)
T 3hpk_A           52 VFDNTPAALDGTVAA-GDEITGVNGRSIKGKTKV-EVAKMIQEVKG-EVTIHYNKL  104 (125)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHH-HHHHHHHHSCS-EEEEEEEEE
T ss_pred             eCCCCHHHHCCCCCC-CCEEEEECCEECCCCCHH-HHHHHHHcCCC-eEEEEEEEC
Confidence            46899999999 999 9999999999998  453 45566766544 599999883

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.4e-09  Score=73.44  Aligned_cols=50  Identities=32%  Similarity=0.381  Sum_probs=40.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +.+..++.   +..+.|+|.|..
T Consensus        51 V~~~spA~~aGL~~-GD~Il~Ing~~v~~~~~~~~~~~l~---~~~v~l~v~R~p  101 (114)
T 2d8i_A           51 VKETGLASKKGLKA-GDEILEINNRAADALNSSMLKDFLS---QPSLGLLVRTYP  101 (114)
T ss_dssp             CCTTSSHHHHTCCT-TCCEEEESSCBGGGCCHHHHHHHHT---SSEEEEEEEECC
T ss_pred             eCCCCHHHHcCCCC-CCEEEEECCEECCCcCHHHHHHHHh---CCcEEEEEEECC
Confidence            57899999999999 9999999999999862 33555554   348899998853

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.89  E-value=2.3e-09  Score=72.77  Aligned_cols=50  Identities=16%  Similarity=0.320  Sum_probs=41.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++.  ++.+ ...++... +.++.|+|.|.
T Consensus        60 V~~gspA~~aG~L~~-GD~Il~VNg~~v~~~~~~~-~~~~l~~~-~~~v~L~v~R~  112 (118)
T 3b76_A           60 VEPGGVISRDGRIKT-GDILLNVDGVELTEVSRSE-AVALLKRT-SSSIVLKALEV  112 (118)
T ss_dssp             ECTTSHHHHHCSSCT-TCEEEEETTEEGGGSCHHH-HHHHHHSC-CSEEEEEEEEE
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCeEEEEEEEC
Confidence            46899999999 999 9999999999999  6644 55666654 57799999884

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.88  E-value=3.8e-09  Score=67.39  Aligned_cols=50  Identities=20%  Similarity=0.393  Sum_probs=37.8

Q ss_pred             CCCCChhhh-cCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQK-AGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~-AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||++ |||++ ||+|++|||+++.++. +....++.. .+.++.|+|.+
T Consensus        35 V~~gspA~~~agl~~-GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~   86 (87)
T 4e34_A           35 IHPGQPADRCGGLHV-GDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY   86 (87)
T ss_dssp             ECTTSHHHHHSCCCT-TEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred             ECCCCHHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence            468999999 79999 9999999999997652 224455554 44578887764

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.88  E-value=2.8e-09  Score=73.17  Aligned_cols=51  Identities=14%  Similarity=0.317  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEec--CCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRL--DQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v--~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++  .++.+ +..++... +..+.|+|.|++
T Consensus        72 V~~~spA~~aG~L~~-GD~Il~vng~~v~~~~~~~-~~~~l~~~-~~~v~l~v~r~~  125 (128)
T 1nf3_C           72 LVPGGLAQSTGLLAV-NDEVLEVNGIEVSGKSLDQ-VTDMMIAN-SRNLIITVRPAN  125 (128)
T ss_dssp             ECTTCHHHHHTCCCT-TCEEEEETTEESTTCCHHH-HHHHHHHT-TTSEEEEEECCC
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcC-CCeEEEEEEECC
Confidence            46899999999 999 999999999999  56643 55666654 356999999865

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.88  E-value=2.2e-09  Score=68.94  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=40.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEec--CCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRL--DQDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v--~~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++|| |++ ||+|++|||+++  .+|++ ...++.... .++.|++.+.
T Consensus        28 V~~gspA~~aG~L~~-GD~Il~ing~~v~~~~~~~-~~~~i~~~~-~~v~L~v~~~   80 (88)
T 3e17_A           28 MTRTGLATKDGNLHE-GDIILKINGTVTENMSLTD-ARKLIEKSR-GKLQLVVLRD   80 (88)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHHTT-TEEEEEECCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHcCC-CeEEEEEeCC
Confidence            46899999999 999 999999999999  66744 567776654 4788887653

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.87  E-value=4e-09  Score=70.53  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|.. ....++. ..++.+.|+|.|++
T Consensus        46 V~~~s~A~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~   99 (113)
T 1um7_A           46 ILAGGPADLSGELRR-GDRILSVNGVNLRNATHEQAAAALK-RAGQSVTIVAQYRP   99 (113)
T ss_dssp             BCSSSHHHHTTCCCT-TCEEEEESSCBCTTCCHHHHHHHHH-SCCSEEEEEEECCH
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEECc
Confidence            46899999999 999 99999999999999842 2333444 35678999998854

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.86  E-value=3.2e-09  Score=77.72  Aligned_cols=50  Identities=18%  Similarity=0.331  Sum_probs=42.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.+||||++|||++ ||+|++|||+++.+  |.+ ...++..  ++.+.|+|.|++
T Consensus       117 V~~gspA~~aGL~~-GD~Il~vng~~v~~~~~~~-~~~~l~~--~~~v~l~v~r~g  168 (192)
T 3k1r_A          117 LIKGGQADSVGLQV-GDEIVRINGYSISSCTHEE-VINLIRT--EKTVSIKVRHIG  168 (192)
T ss_dssp             ECTTSHHHHTTCCT-TEEEEEETTEECTTCCHHH-HHHHHTS--SSEEEEEEEECC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHcC--CCeEEEEEEECC
Confidence            46899999999999 99999999999998  744 5556655  789999999976

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.86  E-value=2.1e-09  Score=73.33  Aligned_cols=52  Identities=15%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++.. ....++... +..+.|+|.|++
T Consensus        58 V~~~spA~~aG~L~~-GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~  111 (124)
T 2daz_A           58 INPEGPAAADGRMRI-GDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNE  111 (124)
T ss_dssp             ECTTSHHHHHTCCCT-TCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECT
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            46899999999 999 99999999999977432 233445444 458999999975

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.86  E-value=6.4e-09  Score=83.88  Aligned_cols=64  Identities=23%  Similarity=0.384  Sum_probs=50.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCc-eEEEEEEcc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQ-DVRTVNITP   65 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~-~~~~v~~~~   65 (163)
                      |.++|||++|||++ ||+|++|||+++.+|. +.+..++....+.++.|+|.|++.. +.+++++.+
T Consensus       106 v~~~spA~~aGl~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r  171 (388)
T 1fc6_A          106 PAPGGPAEKAGARA-GDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTR  171 (388)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEE
Confidence            46899999999999 9999999999999983 3455677666778999999997731 145566543

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.86  E-value=4.9e-09  Score=68.01  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=39.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++ ||++ ||+|++|||+++.++.. ....++. ..++++.|+|.|+.
T Consensus        42 V~~~spA~~-gL~~-GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           42 VQPEGPASK-LLQP-GDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVREV   93 (95)
T ss_dssp             ECTTSTTTT-TCCT-TCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEEEC
T ss_pred             ECCCCchhh-CCCC-CCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEeCC
Confidence            468999999 9999 99999999999988532 2333344 34688999998853

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.85  E-value=3.2e-09  Score=77.18  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=43.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |.+ ...++.. .++.+.|+|.|++.
T Consensus       137 V~~gs~A~~aG~L~~-GD~Il~Vng~~v~~~~~~~-~~~~l~~-~~~~v~l~v~R~~~  191 (196)
T 3gsl_A          137 IIEGGAAHKDGRLQI-GDKILAVNSVGLEDVMHED-AVAALKN-TYDVVYLKVAKPSN  191 (196)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECSSCBHHH-HHHHHHS-CCEEEEEEEEEESC
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCCcCCCCCHHH-HHHHHHc-CCCeEEEEEeCCCC
Confidence            46899999999 999 99999999999998  754 5566654 46789999999763

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=3.2e-09  Score=69.23  Aligned_cols=51  Identities=16%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+ |||++ ||+|++|||+++.+.. +....++.. .++++.|+|.|++
T Consensus        38 V~~~spA~-agL~~-GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   89 (96)
T 2edv_A           38 VTAGGSAH-GKLFP-GDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT   89 (96)
T ss_dssp             BCSSSSST-TTSCT-TCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred             ECCCCchh-hCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            46899996 99999 9999999999998742 223344444 5788999999965

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.85  E-value=3e-10  Score=89.87  Aligned_cols=60  Identities=23%  Similarity=0.478  Sum_probs=0.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +..++..  ++++.++|+|++  +..++++.|.
T Consensus       261 v~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-~~~~l~~--~~~v~l~v~R~g--~~~~~~v~p~  320 (332)
T 3num_A          261 VIPDTPAEAGGLKE-NDVIISINGQSVVSAND-VSDVIKR--ESTLNMVVRRGN--EDIMITVIPE  320 (332)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             eccCCChHHcCCCC-CCEEEEECCEECCCHHH-HHHHHhC--CCeEEEEEEECC--EEEEEEEEEe
Confidence            46899999999999 99999999999999965 6566653  677999999987  5566666665

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.84  E-value=5.5e-09  Score=69.35  Aligned_cols=52  Identities=23%  Similarity=0.410  Sum_probs=40.6

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++| ||++ ||+|++|||+++.+.. +....++.. .+..+.|+|.|.+
T Consensus        48 V~~~spA~~aggL~~-GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~  101 (107)
T 1uhp_A           48 IVDSGPAAKEGGLQI-HDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQVLRRT  101 (107)
T ss_dssp             ECSSSHHHHTTCCCS-SCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred             eCCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence            4689999999 9999 9999999999997642 223344544 4578999998864

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=4.5e-09  Score=71.22  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=41.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.++. +....++... +..+.|+|.|++
T Consensus        54 V~~~spA~~aG~L~~-GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~  107 (120)
T 2eno_A           54 IKENGAAALDGRLQE-GDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHRL  107 (120)
T ss_dssp             ECSSSHHHHSCCSCT-TCEEEEETTEECCSCCHHHHHHHHHHH-CSEEEEEEEEEE
T ss_pred             ECCCChHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            46899999999 999 9999999999999974 1233444433 678999999854

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=1.7e-09  Score=71.60  Aligned_cols=52  Identities=12%  Similarity=0.256  Sum_probs=41.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCC--ChHHHHHHHHhC----CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQ--DNDTLKELLKNG----IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~----~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+  |.+ ...++...    .++++.+.|.|.+
T Consensus        39 v~~~s~A~~aG~L~~-GD~Il~Vng~~v~~~~~~~-~~~~l~~~~~~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           39 IQRGGSAHNCGQLKV-GHVILEVNGLTLRGKEHRE-AARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             ECTTSHHHHHCSSCT-TCBCCEETTEECTTCBHHH-HHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             eCCCChHHHCCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHHhcccCCCCeEEEEEEEcc
Confidence            46899999999 999 99999999999976  754 55566543    5678889888854

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.83  E-value=2.8e-09  Score=73.41  Aligned_cols=53  Identities=8%  Similarity=0.093  Sum_probs=44.2

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCC-hHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQD-NDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++| ||++ ||+|++|||+++.++ .+....++...++..+.++|.|.+
T Consensus        64 V~~gs~A~~aggL~~-GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~  118 (130)
T 1i16_A           64 IFKGAASEQSETVQP-GDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS  118 (130)
T ss_dssp             ECSSCCCSSSCCCCT-TCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence            4689999999 9999 999999999999874 134667777777788999999854

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.82  E-value=6.5e-09  Score=68.47  Aligned_cols=50  Identities=20%  Similarity=0.250  Sum_probs=39.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||++ ||++ ||+|++|||+++.++.. ....++. ..+.++.|+|.|+
T Consensus        50 V~~~spA~~-gL~~-GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~  100 (103)
T 1n7t_A           50 VQPEGPASK-LLQP-GDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVRE  100 (103)
T ss_dssp             BSSSSTTSS-SCCT-TCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEECC
T ss_pred             ECCCCchHH-CCCC-CCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEec
Confidence            468999999 9999 99999999999987532 2334444 3468899999885

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.82  E-value=1.1e-08  Score=86.78  Aligned_cols=61  Identities=23%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.+||||++|||++ ||+|++|||++| ++.+ +..++.. .+++++.++|.|++  +.+++++.+.
T Consensus       503 V~~~spA~~AGL~~-GD~I~aInG~~v-~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~l~  564 (597)
T 4fgm_A          503 VYHDESAYHAGLSA-GDKIIAIDHLQA-TEQS-VKRILERYIPGDTVTIHAFRRD--ELMTLELTWQ  564 (597)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEEC-CTTT-HHHHHTTCCTTCEEEEEEEETT--EEEEEEEECC
T ss_pred             eCCCChHHHCCCCC-CCEEEEECCEEC-CHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEec
Confidence            46899999999999 999999999999 5644 7777765 57789999999988  5566666554

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.82  E-value=6.3e-08  Score=83.76  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.++|||++|| |++ ||+|++|||+++.+|. +....++.. .++.+.|+|.|++.
T Consensus       191 V~~gs~A~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~V~R~g~  245 (721)
T 2xkx_A          191 IIEGGAAHKDGRLQI-GDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPSN  245 (721)
T ss_pred             eCCCCchhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence            46899999999 999 9999999999999984 224444543 35689999999763

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.82  E-value=2.9e-09  Score=73.03  Aligned_cols=53  Identities=17%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC------CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG------IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~------~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+.. +....++...      .+..+.|+|.|.+
T Consensus        62 V~~gspA~~aG~L~~-GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A           62 IIHGGAAFKDGRLRM-NDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             CCSSSSTHHHHTSCS-CCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             ECCCCHHHHCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence            57899999999 999 9999999999998743 2355566543      4688999999965

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=71.13  Aligned_cols=47  Identities=23%  Similarity=0.452  Sum_probs=38.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAV   50 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v   50 (163)
                      |.++|||++|||++ ||+|++|||+++.  ++.+ +..++...++ ++.|+|
T Consensus        55 V~~~spA~~aGl~~-GD~I~~vng~~v~~~~~~~-~~~~l~~~~~-~v~l~v  103 (104)
T 2z17_A           55 IQEDSPAHCAGLQA-GDVLANINGVSTEGFTYKQ-VVDLIRSSGN-LLTIET  103 (104)
T ss_dssp             ECTTSHHHHHTCCT-TCBCCEETTEECTTCCHHH-HHHHHHHTTT-EEEEEC
T ss_pred             ECCCChHHHcCCCC-CCEEEEECCEEcCCCCHHH-HHHHHHhCCC-cEEEEE
Confidence            46899999999999 9999999999999  6644 6677776654 777664

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.81  E-value=4.7e-09  Score=70.41  Aligned_cols=51  Identities=22%  Similarity=0.368  Sum_probs=40.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHH-HHHHHHhCCCCeEEEEEEEC-C
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDT-LKELLKNGIDKELKMAVYSS-K   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~-~~~~l~~~~~~~v~l~v~r~-~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+. ...++...  +.+.++|.|+ +
T Consensus        48 V~~~s~A~~aGL~~-GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~r~~g  100 (114)
T 1x5n_A           48 VKPGSLSAEVGLEI-GDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAAAG  100 (114)
T ss_dssp             ECTTSTTTTTTCCT-TCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSSTT
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEcCCC
Confidence            46899999999999 999999999999999531 33444433  5789999987 5

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.80  E-value=6.6e-09  Score=71.75  Aligned_cols=52  Identities=15%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.++. +....++.. .+..+.|+|.|..
T Consensus        72 V~~gspA~~aGL~~-GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~  124 (132)
T 3l4f_D           72 VDEGGVAWRAGLRM-GDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT  124 (132)
T ss_dssp             ECTTSGGGGGTCCT-TCEEEEESSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence            46899999999999 9999999999999643 234455555 5678999998754

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.79  E-value=8.3e-09  Score=84.83  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=48.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||++|||++ ||+|++|||++|.+|.| +..++.. .++.+.|+|+|++  +.+.+.+
T Consensus       393 V~~gspA~~aGL~~-GD~I~~Vng~~v~~~~~-~~~~l~~-~~~~v~l~v~R~g--~~~~v~l  450 (451)
T 3pv2_A          393 ASENSAGWRAGIRP-GDIIISANKKPVTDVKS-LQTIAQE-KKKELLVQVLRGP--GSMYLLV  450 (451)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECCSHHH-HHHHTTS-SCSCEEEEEEETT--EEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHhc-CCCeEEEEEEECC--EEEEEEe
Confidence            46899999999999 99999999999999954 7677766 5678999999987  4455543

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.79  E-value=4e-09  Score=71.38  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=41.3

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCCCh-HHHHHHHHhC---CCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDN-DTLKELLKNG---IDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~---~~~~v~l~v~r~   53 (163)
                      |.++|||++| ||++ ||+|++|||+++.++. +....++...   .++++.|+|.|.
T Consensus        50 V~~gspA~~aggL~~-GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           50 VYEGGAAERHGGVVK-GDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             CCTTSHHHHHCSSCT-TCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence            5789999999 9999 9999999999999853 2344455432   368899999984

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-08  Score=67.32  Aligned_cols=51  Identities=20%  Similarity=0.386  Sum_probs=40.5

Q ss_pred             CCCCChhhhc-CCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++| ||++ ||+|++|||+++.+  +.+ ...++...+ .++.|++.+..
T Consensus        42 V~~~s~A~~a~gL~~-GD~Il~Ing~~v~~~~~~~-~~~~l~~~~-~~v~l~v~~~~   95 (103)
T 2dc2_A           42 IHPGQPADRCGGLHV-GDAILAVNGVNLRDTKHKE-AVTILSQQR-GEIEFEVVYVA   95 (103)
T ss_dssp             ECTTSHHHHHTCCCS-SEEEEEETTEESTTSCHHH-HHHHHHHCC-SEEEEEEEECC
T ss_pred             ECCCCHHHHhCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhCC-CcEEEEEEecC
Confidence            4689999995 9999 99999999999976  533 455665544 48999998854

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=4e-09  Score=71.32  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=41.2

Q ss_pred             CCCCChhhhc--CCccCCeEEEEECCEecCCCh-HHHHHHHHhCC---CCeEEEEEEECC
Q psy18011          1 VQDNSPGQKA--GLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI---DKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~A--GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~---~~~v~l~v~r~~   54 (163)
                      |.++|||++|  ||++ ||+|++|||+++.++. +....++...+   ..++.|+|.|+.
T Consensus        48 V~~~spA~~a~gGL~~-GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           48 VAPGTPADLCVPRLNE-GDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA  106 (119)
T ss_dssp             ECSSSTTTSSSSCCCT-TCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             ECCCCHHHHhhcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEccc
Confidence            4689999999  9999 9999999999998752 22445554433   258999999864

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.77  E-value=7e-09  Score=69.91  Aligned_cols=52  Identities=25%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.+.. +....++.. .++.+.|+|.|..
T Consensus        57 V~~~spA~~aG~L~~-GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r~~  110 (117)
T 2ehr_A           57 VLEDSPAGKTNALKT-GDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVFIVQSLS  110 (117)
T ss_dssp             ECSSSTTTSSCSCCT-TCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEEEECCBS
T ss_pred             eCCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            46899999999 999 9999999999998743 223344443 4678999998754

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.77  E-value=6.7e-09  Score=76.17  Aligned_cols=51  Identities=22%  Similarity=0.390  Sum_probs=44.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.  ++.+ +..++.. .++.+.|+|+|++
T Consensus       142 v~~~s~A~~aG~l~~-GD~I~~ing~~v~~~~~~~-~~~~l~~-~~~~v~l~v~R~~  195 (200)
T 2qt5_A          142 VRPGGPADREGTIKP-GDRLLSVDGIRLLGTTHAE-AMSILKQ-CGQEATLLIEYDV  195 (200)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHH-HHHHHHT-TCSEEEEEEEEEE
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHc-CCCeEEEEEEECC
Confidence            46899999999 999 9999999999999  8854 6677776 7789999999965

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.75  E-value=2.8e-08  Score=72.44  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEE---CCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYS---SKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r---~~~~~~~~v~~   63 (163)
                      |.++|||++ ||++ ||+|++|||+++.+... ....++... +..+.|+|.|   ++.....++.+
T Consensus        31 v~~~spA~~-gl~~-GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~   94 (195)
T 2qbw_A           31 VQPEGPASK-LLQP-GDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRV   94 (195)
T ss_dssp             ECTTSTTTT-TCCT-TCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ECCCChHHh-CCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEe
Confidence            468999999 9999 99999999999998642 233344444 3589999999   66443444444

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.72  E-value=1.6e-08  Score=74.32  Aligned_cols=52  Identities=17%  Similarity=0.163  Sum_probs=41.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||++|.+|. +....++.. .++.+.|+|.|..
T Consensus       143 V~~gs~A~~aG~L~~-GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~  196 (206)
T 3r0h_A          143 LIQGQYPEIDSKLQR-GDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRPK  196 (206)
T ss_dssp             ECTTSCHHHHHHCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999873 224455544 4578999999853

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.72  E-value=1.7e-09  Score=72.33  Aligned_cols=51  Identities=16%  Similarity=0.235  Sum_probs=40.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|| |++ ||+|++|||+++.  +|.+ ...++.. .+..+.|+|.|+.
T Consensus        51 V~~~spA~~aG~L~~-GD~Il~vng~~v~~~~~~~-~~~~l~~-~g~~v~l~v~r~~  104 (111)
T 1uju_A           51 VSPTGAAGRDGRLRV-GLRLLEVNQQSLLGLTHGE-AVQLLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             ECTTSHHHHHSSCCT-TCBCCBBSSCBCTTSCHHH-HHHHHSS-CSSEEEECCCCCC
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCCHHH-HHHHHHc-CCCeEEEEEEECC
Confidence            46899999999 999 9999999999999  4543 4455544 5678999998854

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.70  E-value=4.5e-08  Score=63.78  Aligned_cols=48  Identities=19%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             hhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCC-CCeEEEEEEECC
Q psy18011          6 PGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI-DKELKMAVYSSK   54 (163)
Q Consensus         6 pA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~-~~~v~l~v~r~~   54 (163)
                      +|++|||++ ||+|++|||+++.++. +.+..++...+ ++++.|+|.|++
T Consensus        42 ~a~~aGL~~-GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   91 (96)
T 1ujv_A           42 IQGCPGLCE-GDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS   91 (96)
T ss_dssp             GGGSTTCCS-SCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred             ccccCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            478999999 9999999999998751 34667777654 789999999975

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.66  E-value=8.6e-09  Score=83.58  Aligned_cols=51  Identities=25%  Similarity=0.431  Sum_probs=43.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKT   55 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~   55 (163)
                      |.+||||++|||++ ||+|++|||++|.+| + +..++.. .+.++.|++.|++.
T Consensus        97 V~~gsPA~~AGL~~-GD~I~~InG~~v~~~-~-~~~~l~~-~g~~v~l~v~R~g~  147 (403)
T 3k50_A           97 VVPGSPAEEAGLQR-GHWIMMMNGDYITKK-V-ESELLQG-STRQLQIGVYKEVV  147 (403)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTBCBCTT-T-GGGGTSC-SCEEEEEEEEEEEC
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEEccch-h-HHHHhhC-CCCEEEEEEEeCCc
Confidence            46899999999999 999999999999999 4 4455555 77899999999754

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.65  E-value=2.9e-08  Score=80.17  Aligned_cols=52  Identities=25%  Similarity=0.391  Sum_probs=44.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKN-GIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~-~~~~~v~l~v~r~~   54 (163)
                      |.+||||++|||++ ||+|++|||+++.+  +.+ +..++.. ..++.+.|++.|++
T Consensus        38 V~~gspA~~aGL~~-GD~Il~VnG~~v~~~~~~e-~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           38 VLEDSPAAKEGLEE-GDQILRVNNVDFTNIIREE-AVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             ECTTCHHHHTTCCT-TEEEEEETTEECTTCCHHH-HHHHHHHSCTTSEEEEEEEECH
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhhcCCCeEEEEEeeCC
Confidence            57899999999999 99999999999986  644 5566665 67889999999964

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.65  E-value=1.9e-08  Score=67.79  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+ +||++ ||+|++|||+++.++.. ....++.. .++.+.|+|.|.+
T Consensus        53 V~~~spA~-~gL~~-GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~  104 (117)
T 2csj_A           53 VLPGGPAD-GLLQE-NDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVKRPR  104 (117)
T ss_dssp             ECTTSSHH-HHBCT-TCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEEEEE
T ss_pred             ECCCCccc-ccCCC-CCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEECC
Confidence            46899997 99999 99999999999987632 23344444 4678999999854

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.58  E-value=9.5e-09  Score=76.71  Aligned_cols=51  Identities=27%  Similarity=0.483  Sum_probs=43.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeE-EEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKEL-KMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v-~l~v~r~~   54 (163)
                      |.+||||++|||++ ||+|++|||++|.  +|.+ +..++... +..+ .++|.|++
T Consensus        40 V~~gSpA~~aGL~~-GD~Il~VNG~~V~~~s~~d-l~~~l~~~-g~~v~~l~V~R~g   93 (216)
T 2krg_A           40 VDPDSPAEASGLRA-QDRIVEVNGVCMEGKQHGD-VVSAIRAG-GDETKLLVVDRET   93 (216)
T ss_dssp             ECTTSHHHHHTCCT-TCBCCEETTEECTTCCTHH-HHHHHHHH-CSEEEEEECCHHH
T ss_pred             eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhc-CCeEEEEEEEECC
Confidence            46899999999999 9999999999999  8865 55666654 6778 89988865

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.99  E-value=6.9e-09  Score=69.69  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=35.0

Q ss_pred             CCCCChhhh-cCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQK-AGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~-AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.++|||++ |||++ ||+|++|||+++.+  +.+ ...++...+ ..+.|+|.
T Consensus        60 V~~~spA~~~aGL~~-GD~Il~ING~~v~~~~~~~-~~~~l~~~~-~~v~l~V~  110 (112)
T 2lob_A           60 IHPGQPADRCGGLHV-GDAILAVNGVNLRDTKHKE-AVTILSQQR-GEIEFEVV  110 (112)
Confidence            468999999 99999 99999999999954  543 444554333 34666553

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.53  E-value=9.8e-08  Score=78.65  Aligned_cols=52  Identities=25%  Similarity=0.391  Sum_probs=43.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKN-GIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~-~~~~~v~l~v~r~~   54 (163)
                      |.+||||++|||++ ||+|++|||+++.+  +.+ +..++.. ..+..+.|+|.|++
T Consensus        30 V~~gspA~~aGL~~-GD~Il~VNG~~v~~~t~~e-~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           30 VLEDSPAAKEGLEE-GDQILRVNNVDFTNIIREE-AVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             ECSSSHHHHTTCCT-TEEEEEETTEECTTCCHHH-HHHHHHHSCTTSEEEEEEEECH
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHHhcCCCCEEEEEEEECC
Confidence            46899999999999 99999999999987  544 5566655 46789999999964

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.52  E-value=3.4e-07  Score=61.46  Aligned_cols=49  Identities=16%  Similarity=0.165  Sum_probs=40.4

Q ss_pred             hhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEECCC
Q psy18011          6 PGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSSKT   55 (163)
Q Consensus         6 pA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~~~   55 (163)
                      ||+.|||++ ||+|++|||+++.+.. +++..++... .+.++.|+|.|++.
T Consensus        44 ~~~~aGL~~-GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           44 SQWCQGLQK-GDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP   94 (113)
T ss_dssp             GGGSTTCCT-TCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred             hHHhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence            688999999 9999999999999653 3466777754 47899999999773

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.47  E-value=1.7e-08  Score=82.89  Aligned_cols=51  Identities=18%  Similarity=0.350  Sum_probs=0.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++|||++ ||+|++|||+++.+|.+ +..++....+ .+.|+|.|++
T Consensus       390 V~~gspA~~aGL~~-GDiI~~vng~~v~~~~~-l~~~l~~~~~-~v~l~v~R~g  440 (448)
T 1ky9_A          390 VKTGTPAAQIGLKK-GDVIIGANQQAVKNIAE-LRKVLDSKPS-VLALNIQRGD  440 (448)
T ss_dssp             ------------------------------------------------------
T ss_pred             ecCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHcCCC-eEEEEEEECC
Confidence            46899999999999 99999999999999965 6677765544 8899999976

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.41  E-value=1.9e-07  Score=71.56  Aligned_cols=52  Identities=21%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             CCCCChhhh-cCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQK-AGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~-AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.+||||++ |||++ ||+|++|||+++.++. +....++... ++.+.|+|.|.+
T Consensus       110 V~~gspA~~~aGL~~-GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~~  163 (263)
T 1z87_A          110 IFKGLAADQTEALFV-GDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMK  163 (263)
T ss_dssp             CCTTSHHHHCTTCCS-SCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred             ECCCCHHHHhCCCCC-CCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeCc
Confidence            578999999 79999 9999999999999863 2344556554 567999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.21  E-value=3e-06  Score=75.43  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CCChhhhcC--CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011          3 DNSPGQKAG--LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP   65 (163)
Q Consensus         3 ~~SpA~~AG--L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~   65 (163)
                      ++|||++||  |+  ||+|++|||+++.++.+ +..++....+.++.|+|.|++ .+.+++++.+
T Consensus       765 ~~spa~~ag~~l~--GD~I~~i~g~~~~~~~~-~~~~~~~~~g~~v~l~v~r~~-~~~~~~~~~~  825 (1045)
T 1k32_A          765 EKSPIFEYGIDPT--GYLIEDIDGETVGAGSN-IYRVLSEKAGTSARIRLSGKG-GDKRDLMIDI  825 (1045)
T ss_dssp             CBCGGGGGTCCCT--TCEEEEETTEECBTTBC-HHHHHHTTTTSEEEEEEECSS-SCEEEEEEEC
T ss_pred             CCChHHHCCCCcC--CCEEEEECCEEccchhh-HHHhhcCCCCCEEEEEEECCC-CceEEEEEEE
Confidence            359999999  88  99999999999999965 667787778899999999975 2445666654

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.18  E-value=5.6e-06  Score=53.73  Aligned_cols=52  Identities=13%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~   53 (163)
                      +.++|||++.| |+. ||.|++|||+.+..|. +...+++... .+.++.|.+.+.
T Consensus        35 I~~gg~a~r~g~L~v-GD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p   89 (95)
T 3gge_A           35 IKDGGVIDSVKTICV-GDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP   89 (95)
T ss_dssp             ECTTSHHHHCTTCCT-TCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             EcCCChHHhcCCCCC-CCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence            36899999998 899 9999999999999885 3455667654 456788887664

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.81  E-value=2.7e-06  Score=68.54  Aligned_cols=49  Identities=14%  Similarity=0.216  Sum_probs=0.0

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCC--ChHHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ--DNDTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~--~~d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||+++||++ ||+|++|||+++.+  +. .+..++.. .++.+.+++.+
T Consensus       322 V~~gs~A~~aGL~~-GD~Il~VNg~~v~~~s~~-~~~~~l~~-~~~~v~L~V~p  372 (388)
T 3suz_A          322 LMRGGIAERGGVRV-GHRIIEINGQSVVATAHE-KIVQALSN-SVGEIHMKTMP  372 (388)
T ss_dssp             ------------------------------------------------------
T ss_pred             eecCCHHHHcCCCC-CCEEEEECCEECCCCCHH-HHHHHHHh-CCCeEEEEEEe
Confidence            46899999999999 99999999999974  43 34455544 34556676654

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.70  E-value=4.8e-05  Score=48.77  Aligned_cols=58  Identities=14%  Similarity=0.277  Sum_probs=45.2

Q ss_pred             ccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecCCC--CCCcceeceeeccc
Q psy18011         88 NENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSNS--WGGQGLLGVSIRFC  150 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~~~--~~~~g~iG~~~~~~  150 (163)
                      +|.   |++||+      .+|.++++.. +|+++.|+|.|  +++.++++++|...  +.+.+.||+++.-.
T Consensus        21 GD~---I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~~~~~~~~~gr~~~~~~~~~~   87 (91)
T 2kjp_A           21 GDK---IISADGKNYQSAEKLIDYISSKKAGDKVTLKIER--EEKEKRVTLTLKQFPDEPDRAGIGVSLEHH   87 (91)
T ss_dssp             SCE---EEEETTBCCSSHHHHHHHHSSCCSSCEECEEEES--SSCEECCCEECCCCTTCTTSCSCCSCCCTT
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEE--CCEEEEEEEEEeccCCCCCcceeEEeeecc
Confidence            566   999998      7888888876 69999999998  66778888888652  34567889887543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.50  E-value=0.00017  Score=52.28  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=34.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||++||--.-||+|++|||+++.++.-.-..-+-...++.+.|+|+|++
T Consensus       142 V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          142 IKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             CCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             ECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            568999999990000999999999999981000000000001788999999864

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.46  E-value=0.00067  Score=43.93  Aligned_cols=59  Identities=10%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             ccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecCCC-CCCcceeceeecccc
Q psy18011         88 NENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSNS-WGGQGLLGVSIRFCS  151 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~~~-~~~~g~iG~~~~~~~  151 (163)
                      +|.   |++||+      ++|.+++... +++++.|++.|  ++..+++++++... ..+.+.||+.+....
T Consensus        27 GD~---I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~~~~~~~~~~~~iGi~~~~~~   93 (100)
T 3i18_A           27 GDL---ITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKH--GDKNEQADIKLTAIDKKGTPGIGITLVDDL   93 (100)
T ss_dssp             TCE---EEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEE--TTEEEEEEEECEECSTTCCEECSEEEGGGC
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEEEecCCCCCCcEEeEEEecCC
Confidence            566   999998      7888888864 68999999998  66777777777532 235678999886544

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.36  E-value=0.00025  Score=59.41  Aligned_cols=49  Identities=16%  Similarity=0.075  Sum_probs=42.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.|+|+|+.+|+++ ||+|++|||++|.+..+ +.+++....++-+.|+..
T Consensus       422 V~~~s~a~~~g~~~-gdiI~~vNg~~V~s~~~-l~~~l~~~k~~~l~~~~~  470 (539)
T 4fln_A          422 VLANEVNIGYEDMN-NQQVLKFNGIPIRNIHH-LAHLIDMCKDKYLVFEFE  470 (539)
T ss_dssp             ECCCGGGTTCSSCC-SEEEEEETTEECCSHHH-HHHHHHTCCSSEEEEEET
T ss_pred             ecCCchhhhcCCCC-CCEEEeECCEEcCCHHH-HHHHHHHcCCCeEEEEEC
Confidence            46899999999999 99999999999999954 888998877777777654

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.27  E-value=0.001  Score=42.55  Aligned_cols=56  Identities=11%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             ccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecCCC--CCCcceeceeec
Q psy18011         88 NENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSNS--WGGQGLLGVSIR  148 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~~~--~~~~g~iG~~~~  148 (163)
                      +|.   |++||+      .+|.++++.. +|+++.|++.|  +++.++++++|...  +.+..++|+.+.
T Consensus        25 GD~---Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~~~~~~~~~~~~~~~~~~~   89 (94)
T 2kl1_A           25 GDR---IAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIR--DRKQHEAELVLKPFPHHPNQIGLGVTLE   89 (94)
T ss_dssp             TCE---EEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEE--TTEEEEEEECCCBCSSCTTCBCCSCC--
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEEEeeCCCCCCCcEEEEEee
Confidence            566   999998      7888888875 79999999998  67788888888643  234567777654

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.16  E-value=0.0013  Score=41.46  Aligned_cols=56  Identities=16%  Similarity=0.333  Sum_probs=41.5

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCC--CC-Ccceeceeec
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNS--WG-GQGLLGVSIR  148 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~--~~-~~g~iG~~~~  148 (163)
                      +|.   |+++|+      ++|.+++..++++++.|++.|  ++..++++++|...  .+ ..|++|+.+.
T Consensus        25 GD~---I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R--~g~~~~~~v~~~~~~~~~~~~g~~g~~~~   89 (91)
T 2zpm_A           25 GDR---IVXVDGQPLTQWVTFVMLVRDNPGXSLALEIER--QGSPLSLTLIPESXPGNGXAIGFVGIEPX   89 (91)
T ss_dssp             TCE---EEEETTEECCCHHHHHHHHHHCTTCCEEEEEEE--TTEEEEEEECCEEECCSSSCEEECCEECC
T ss_pred             CCE---EEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEE--CCeEEEEEEEEeeecCCCceEEEEEEEEe
Confidence            555   999998      788888887788999999998  66778888887531  11 1467887653

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=96.53  E-value=0.0073  Score=40.75  Aligned_cols=56  Identities=9%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             ccceEEEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeeccc
Q psy18011         88 NENVWHILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFC  150 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~  150 (163)
                      +|.   |++||+      ++|.++++. .+++++.|+| |  +++ +.+++.+...+.+.++||+.+...
T Consensus        45 GD~---Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~V-R--~g~-~~v~l~~~~~~~~~~~lGi~~~~~  107 (125)
T 2hga_A           45 GLV---IESINGMPTSNLTTYSAALKTISVGEVINITT-D--QGT-FHLKTGRNPNNSSRAYMGIRTSNH  107 (125)
T ss_dssp             TCE---EEEETTEECSSHHHHHHHHTTCCTTCEEEEEE-T--TEE-EEEECCBCSSSCCSCBCCEEEECC
T ss_pred             CCE---EEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE-E--CCE-EEEEEeccCCCCCceEEEEEecCC
Confidence            455   999998      778888874 5789999999 7  555 555554432223456899987654

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=96.20  E-value=0.017  Score=39.21  Aligned_cols=40  Identities=25%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             EeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         94 ILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        94 I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      |+++|+      .+|.+++... +|+++.|+|.|  +++.++++++|..
T Consensus        80 I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~~~~  126 (134)
T 2l97_A           80 ITKVDDKEIASSTDLQSALYNHSIGDTIKITYYR--NGKEETTSIKLNK  126 (134)
T ss_dssp             EEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEE--TTEEEEEEEECCC
T ss_pred             EEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEEEcc
Confidence            999998      6788888775 79999999998  6788899998854

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.20  E-value=0.0032  Score=42.37  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=48.1

Q ss_pred             CCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEeee------------cccc--------cccceEEEeeeCc-
Q psy18011         41 GIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFC------------SFEG--------ANENVWHILDQDN-   99 (163)
Q Consensus        41 ~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~~~------------~~~~--------~~~~~~~I~~v~~-   99 (163)
                      .+++++.++|+|++  +.+++.+....    ...+|+.+...            ...+        ++|.   |++||+ 
T Consensus         6 ~~g~~v~l~v~R~g--~~~~v~v~~~~----~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~---I~~vng~   76 (128)
T 1uf1_A            6 SGDRRSTLHLLQGG--DEKKVNLVLGD----GRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQ---ILEVNGR   76 (128)
T ss_dssp             STTTSCCSCCCCCS--SEEEEEEECCS----SCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCE---EEEETTE
T ss_pred             CCCCEEEEEEEeCC--cEEEEEEEECC----CCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCE---EEEECCE
Confidence            35677888898887  44555554331    12355544321            0001        2344   999998 


Q ss_pred             -------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011        100 -------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus       100 -------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                             .++.+.++  .++++.|+|.|  ++...+++++|..
T Consensus        77 ~v~~~~~~~~~~~~~--~~~~v~l~v~R--~g~~~~~~v~~~~  115 (128)
T 1uf1_A           77 SFLNILHDEAVRLLK--SSRHLILTVKD--VGRLPHARTTVDE  115 (128)
T ss_dssp             ECSSCCHHHHHHHHT--TCSEEEEEEEC--CSCCSSCSCCCCS
T ss_pred             ECCCCCHHHHHHHHh--cCCeEEEEEEE--CCccccccccccc
Confidence                   23444444  36799999998  5555666667653

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=95.63  E-value=0.035  Score=35.28  Aligned_cols=57  Identities=18%  Similarity=0.227  Sum_probs=38.7

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccC-CCeEEEEEEeCCCCeEEEEEEecCC---CCC--C-cceeceee
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGI-DKELKMAVYSSKTQDVRTVNITPSN---SWG--G-QGLLGVSI  147 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~-~~~v~l~v~r~~~~~~~~v~v~p~~---~~~--~-~g~iG~~~  147 (163)
                      +|.   |++||+      ++|...+..+. ++++.|+|.|++.+..+++++....   +..  . ...||+.+
T Consensus        23 GD~---I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~~~~~~~~~l~~lGl~p   92 (95)
T 3id1_A           23 GTE---LKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRP   92 (95)
T ss_dssp             TCE---EEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCCCCTTTSCHHHHTTEEE
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccccCCCCCCHHHHcCccC
Confidence            556   999998      78888887665 4899999999765455666666543   111  1 34577765

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=95.32  E-value=0.063  Score=33.36  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             ccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         88 NENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      +|.   |++||+      .+|.++++.. +++++.|+|.|  +++.++++++
T Consensus        40 GD~---I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R--~g~~~~~~v~   86 (87)
T 2i6v_A           40 GDM---AVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER--DGQQHDVYIQ   86 (87)
T ss_dssp             TCE---EEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEE--TTEEEEEEEE
T ss_pred             CCE---EEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEE
Confidence            556   999998      6788888764 68899999998  5666666654

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=95.06  E-value=0.083  Score=34.04  Aligned_cols=41  Identities=12%  Similarity=0.218  Sum_probs=31.7

Q ss_pred             cccceEEEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         87 ANENVWHILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        87 ~~~~~~~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      ++|.   |++||+      .+|.++++. .+++++.|+|.|  +++.++++++
T Consensus        57 ~GDv---I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R--~g~~~~~~v~  104 (105)
T 2i4s_A           57 DGDM---AVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER--DGQQHDVYIQ  104 (105)
T ss_dssp             TTCE---EEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEE--TTEEEEEEEE
T ss_pred             CCCE---EEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEE--CCEEEEEEEe
Confidence            3566   999998      778888876 468999999998  5666666654

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=94.02  E-value=0.17  Score=32.68  Aligned_cols=39  Identities=15%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      .|++||+        +++.++++..+++++.|.+.|++...  .+++.|
T Consensus        50 ~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~--~~~~~~   96 (112)
T 1qau_A           50 IILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF--TTHLET   96 (112)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTS--EEEEEE
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCccc--ceEeee
Confidence            4999987        67888888778899999999965544  444444

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=93.46  E-value=0.16  Score=39.27  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|+++|+      .+|.++++. .+|+++.|+|.|  +++.++++++|.
T Consensus       267 ~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~~~  313 (318)
T 1te0_A          267 LIISVDNKPAISALETMDQVAEIRPGSVIPVVVMR--DDKQLTLQVTIQ  313 (318)
T ss_dssp             CEEEETTEECCCHHHHHHHHHTSCTTCEEEEEEES--SSCEEEEEEECE
T ss_pred             EEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEEc
Confidence            3899988      788888886 589999999998  667778888774

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=93.39  E-value=0.13  Score=34.18  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      |++||+        +++.++++..+++++.|.+.|  ++..+.+++++..
T Consensus        58 I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R--~g~~~~~~~~~~~  105 (127)
T 1b8q_A           58 ILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR--GPEGFTTHLETTF  105 (127)
T ss_dssp             CCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC--CCCSEEECCCCCC
T ss_pred             EEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe--CCceEEEEEEEEe
Confidence            888887        678888888788999999998  4455666666643

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=93.37  E-value=0.21  Score=32.34  Aligned_cols=41  Identities=17%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      +|.   |+++|+      .+|.++++.  ++++.|+|.|  ++..++++++|..
T Consensus        56 GD~---I~~ing~~v~~~~~~~~~l~~--~~~v~l~v~R--~g~~~~~~v~~~~  102 (113)
T 2pzd_A           56 GDV---ILAIGEQMVQNAEDVYEAVRT--QSQLAVQIRR--GRETLTLYVTPEV  102 (113)
T ss_dssp             TCE---EEEETTEECCSHHHHHHHHHH--CSSEEEEEEE--TTEEEEEEECCEE
T ss_pred             CCE---EEEECCEECCCHHHHHHHHhC--CCeEEEEEEE--CCEEEEEEEEEee
Confidence            566   999988      677888875  6889999998  6777888888753

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=93.15  E-value=0.12  Score=32.03  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=21.2

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      .|++||+        +++.++++.. +.++.|+|.|  ++....+++.|
T Consensus        47 ~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r--~g~~~~~~v~p   92 (92)
T 3cyy_A           47 VVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQR--DERATLLNVPD   92 (92)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEC-------------
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEe--CCceeeeeCCC
Confidence            4999988        5777778764 4589999998  55556666554

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=92.96  E-value=0.23  Score=38.97  Aligned_cols=41  Identities=12%  Similarity=0.175  Sum_probs=33.7

Q ss_pred             EEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         93 HILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      .|+++|+      .+|.+++... +|+++.|+|.|  +++.+++++++..
T Consensus       286 vI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~~  333 (345)
T 3stj_A          286 IITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR--NGKPLEVEVTLDT  333 (345)
T ss_dssp             EECEETTEECSCHHHHHHHHHTSCTTCEEEEEEEE--TTEEEEEEEECEE
T ss_pred             EEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEEcc
Confidence            4888888      7888888774 79999999999  6777888887753

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=92.73  E-value=0.2  Score=32.44  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      +|.   |+++|+      .+|.++++  +++++.|+|.|  ++..++++++|..
T Consensus        56 GD~---I~~ing~~v~~~~~~~~~l~--~g~~v~l~v~R--~g~~~~~~v~~~~  102 (112)
T 2p3w_A           56 GDI---IVKVNGRPLVDSSELQEAVL--TESPLLLEVRR--GNDDLLFSIAPEV  102 (112)
T ss_dssp             TCE---EEEETTEECCSHHHHHHHHH--HCSSEEEEEEE--TTEEEEEEECCEE
T ss_pred             CCE---EEEECCEECCCHHHHHHHHh--CCCeEEEEEEE--CCEEEEEEEEEee
Confidence            566   999998      67777774  47889999998  6677888888753

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=92.23  E-value=0.26  Score=32.48  Aligned_cols=33  Identities=12%  Similarity=0.108  Sum_probs=27.0

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccC-CCeEEEEEEeCCC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGI-DKELKMAVYSSKT  123 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~~~  123 (163)
                      +|.   |++||+        ++++++|++.+ |.++.|+|.|++.
T Consensus        53 GD~---Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           53 GDI---IKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP   94 (113)
T ss_dssp             TCE---EEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred             CCE---EEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence            455   999998        68999999765 8899999999554

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=92.03  E-value=0.24  Score=31.23  Aligned_cols=30  Identities=13%  Similarity=0.265  Sum_probs=24.9

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++..+ ++++.|+|.|++
T Consensus        53 ~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   91 (96)
T 1ujv_A           53 LIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS   91 (96)
T ss_dssp             EEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            3999988        67888998875 899999999843

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=91.97  E-value=0.21  Score=33.94  Aligned_cols=38  Identities=13%  Similarity=0.247  Sum_probs=25.2

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      .|++||+        +++.++++..+|+++.|+|.|+  +....+.++
T Consensus        87 ~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~--g~~~~v~~~  132 (139)
T 2vz5_A           87 KIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ--SLQKAVQQS  132 (139)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEEC--C-------C
T ss_pred             EEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEEC--CEEEEEEEe
Confidence            3999988        5788888877789999999994  444444443

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=91.78  E-value=0.29  Score=38.32  Aligned_cols=40  Identities=15%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|++||+      ++|.+++.. .+|+++.|+|.|  +++.+++++++.
T Consensus       285 vI~~ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~  331 (348)
T 3qo6_A          285 IITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLR--GDHKEKISVTLE  331 (348)
T ss_dssp             EECEETTBCCSSSHHHHHHHTTCCTTCEEEEEEEC--SSSEEEEEEECE
T ss_pred             EEEEECCEEeCCHHHHHHHHHhCCCcCEEEEEEEE--CCEEEEEEEEEc
Confidence            4999998      788888865 479999999998  556667777664

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=91.72  E-value=0.52  Score=39.86  Aligned_cols=41  Identities=15%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             EEeeeCc-----hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         93 HILDQDN-----DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        93 ~I~~v~~-----~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      .|++||+     .+|.++++. .+|+++.|+|.|  +++.+++++++..
T Consensus       519 ~I~aInG~~v~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~~  565 (597)
T 4fgm_A          519 KIIAIDHLQATEQSVKRILERYIPGDTVTIHAFR--RDELMTLELTWQE  565 (597)
T ss_dssp             EEEEETTEECCTTTHHHHHTTCCTTCEEEEEEEE--TTEEEEEEEECCC
T ss_pred             EEEEECCEECCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEecC
Confidence            4999998     689999986 579999999999  6788888888865

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=90.52  E-value=0.41  Score=30.50  Aligned_cols=39  Identities=13%  Similarity=0.116  Sum_probs=22.4

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|++||+        .++...++. .+.++.|+|.|  ++....+.++|.
T Consensus        57 ~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R--~~~~~~~~~~p~  103 (105)
T 2awx_A           57 KLLAVNSVSLEEVTHEEAVTALKN-TSDFVYLKVAK--PTSMYISRHHHH  103 (105)
T ss_dssp             EEEEETTEECTTCBHHHHHHHHHS-CCSEEEEEEEC--CCC---------
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEc--CCCCCCcccccc
Confidence            4999998        455566665 47899999998  555566666663

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=90.34  E-value=1.1  Score=28.62  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=28.5

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCC-CeEEEEEEec
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKT-QDVRTVNITP  133 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~-~~~~~v~v~p  133 (163)
                      .|++||+        .++..+++. ++.++.|+|.|++. ....+++++.
T Consensus        56 ~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~~~~v~l~~  104 (106)
T 4amh_A           56 KLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKPGSGEKIMEIKLIK  104 (106)
T ss_dssp             EEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECCSSSCSEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCCCeEEEEEEec
Confidence            3999998        456667765 56799999999653 4566666653

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=90.21  E-value=0.48  Score=30.61  Aligned_cols=30  Identities=10%  Similarity=0.275  Sum_probs=25.1

Q ss_pred             EEeeeCc--------hHHHHHHHccC---CCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGI---DKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~---~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++|++.+   ++++.|.+.|.+
T Consensus        65 ~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           65 QLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             BEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCC
Confidence            3999998        68889998877   889999999854

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=90.21  E-value=0.13  Score=32.82  Aligned_cols=41  Identities=15%  Similarity=0.165  Sum_probs=29.2

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      +|.   |++||+        .++..+++. .++++.|+|.|  ++...+++++|.
T Consensus        50 GD~---I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R--~g~~~~~~v~p~   98 (103)
T 1wf7_A           50 GDV---VLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQR--ASAAAKSEPVSS   98 (103)
T ss_dssp             TCB---EEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECC--CSCCCCCCCCCC
T ss_pred             CCE---EEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe--CCCcCCCCCCCC
Confidence            455   999998        445566665 47899999988  555566777774

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=90.12  E-value=0.97  Score=31.21  Aligned_cols=52  Identities=15%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             EEeeeCc------hH-H-HHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeeccc
Q psy18011         93 HILDQDN------DT-L-KELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFC  150 (163)
Q Consensus        93 ~I~~v~~------~~-l-~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~  150 (163)
                      .|++||+      .+ + ..+++..+++++.|+|.|  .++.+++++++..    .+.+|+.+..+
T Consensus        50 ~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~--~~~~~~v~l~~~~----~~~lG~~~~~g  109 (166)
T 1w9e_A           50 QVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD--RPFERTITMHKDS----TGHVGFIFKNG  109 (166)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC--CTTCEEEEEECCT----TSCCSEEEETT
T ss_pred             EEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEc--CCCcEEEEEecCC----CCcEeEEEeCC
Confidence            3999998      33 4 456666678899999943  3355777777632    23467766533

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=89.97  E-value=0.25  Score=30.89  Aligned_cols=31  Identities=3%  Similarity=0.144  Sum_probs=24.7

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQ  124 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~  124 (163)
                      .|++||+        +++.++++.. ++++.|+|.|++..
T Consensus        53 ~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~   91 (96)
T 2v90_A           53 RLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD   91 (96)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence            4999998        6778888874 89999999985543

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=89.97  E-value=1.2  Score=27.47  Aligned_cols=27  Identities=7%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      .|++||+        ++..++|+ .++..++|+|..
T Consensus        46 ~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p   80 (82)
T 1r6j_A           46 NICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP   80 (82)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred             EEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence            3999998        78889999 578889998863

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=89.55  E-value=0.45  Score=29.40  Aligned_cols=29  Identities=14%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++.. ++++.|+|.|.+
T Consensus        50 ~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~   86 (91)
T 2vsp_A           50 VIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKK   86 (91)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC--
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCC
Confidence            3999987        6788888876 899999999843

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=89.48  E-value=0.66  Score=35.93  Aligned_cols=38  Identities=18%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|+++|+      ++|.++++.  ++++.|+|.|  +++.++++++|.
T Consensus       279 vI~~ing~~v~~~~~l~~~l~~--~~~v~l~v~R--~g~~~~~~v~~~  322 (325)
T 1lcy_A          279 VILAIGEQMVQNAEDVYEAVRT--QSQLAVQIRR--GRETLTLYVTPE  322 (325)
T ss_dssp             EEEEETTEECCSHHHHHHHHTT--CSSEEEEEEE--TTEEEEEEECCE
T ss_pred             EEEEECCEEcCCHHHHHHHHhC--CCeEEEEEEE--CCEEEEEEEEEe
Confidence            4888887      788888875  6899999998  678888888874

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=88.82  E-value=0.13  Score=34.03  Aligned_cols=36  Identities=11%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEE
Q psy18011         93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVN  130 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~  130 (163)
                      .|++||+      ++|.++++..+++++.|+|.|  ++..+...
T Consensus        72 ~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R--~g~~~~~~  113 (124)
T 1wh1_A           72 RIIQINGIEVQNREEAVALLTSEENKNFSLLIAR--PELQLDEG  113 (124)
T ss_dssp             EEEEESSCBCCSHHHHHHHHTCSSCCSCCEEEEE--CSSCCCCC
T ss_pred             EEEEECCEECCCHHHHHHHHHhCCCCEEEEEEEE--CCEEeecc
Confidence            4999998      788899988778999999998  44434433

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=88.77  E-value=0.55  Score=28.96  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=24.4

Q ss_pred             EEeeeCc------h--HHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN------D--TLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~------~--~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+      .  ++.++++. +++++.|+|.|++
T Consensus        50 ~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g   86 (91)
T 2pkt_A           50 VITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSE   86 (91)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            3999998      3  78888887 8999999999844

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=88.71  E-value=0.096  Score=33.86  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=28.6

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      .|++||+        .++..+++. .++++.|.|.|  ++....++++|..
T Consensus        60 ~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R--~~~~~~~~v~~~~  107 (110)
T 1um1_A           60 RILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAK--SDVETAKKIHSGP  107 (110)
T ss_dssp             EEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEEC--CCHHHHHHHSSCS
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe--CCcceeEEEEecC
Confidence            4999998        455566665 58899999998  5555666666653

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=88.66  E-value=0.62  Score=28.74  Aligned_cols=28  Identities=14%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.+++++.++ ++.|+|.|.
T Consensus        49 ~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~   84 (88)
T 1kwa_A           49 EIREINGISVANQTVEQLQKMLREMRG-SITFKIVPS   84 (88)
T ss_dssp             EEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECC
Confidence            3999998        778899988776 899999874

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=87.92  E-value=0.93  Score=27.60  Aligned_cols=28  Identities=7%  Similarity=0.144  Sum_probs=23.3

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++..+ +++.|+|.|+
T Consensus        49 ~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   84 (87)
T 2pa1_A           49 IIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRI   84 (87)
T ss_dssp             EEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence            3999987        67888888766 8999999984

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=87.86  E-value=0.62  Score=29.04  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=24.3

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++. +++++.|+|.|++
T Consensus        56 ~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~   92 (97)
T 2jil_A           56 RLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDV   92 (97)
T ss_dssp             EEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4999998        678888887 8999999999854

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=87.64  E-value=1.1  Score=34.59  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      .|++||+      .+|.+++.. .+|+++.|+|.|. +++.++++++|.
T Consensus       265 ~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~-~g~~~~~~v~~~  312 (324)
T 1y8t_A          265 VVTKVDDRPINSADALVAAVRSKAPGATVALTFQDP-SGGSRTVQVTLG  312 (324)
T ss_dssp             EEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEECS-SCCEEEEEEECE
T ss_pred             EEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEEC-CCCEEEEEEEEc
Confidence            4999998      678888876 4799999999871 345567777764

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=87.64  E-value=0.97  Score=27.57  Aligned_cols=29  Identities=14%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             EEeeeCc--------hHHHHHHHc-cCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKN-GIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~-~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++. .+++++.|+|.|+
T Consensus        48 ~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   85 (88)
T 3bpu_A           48 LIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ   85 (88)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEE
T ss_pred             EEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            3999998        577778874 4789999999984

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=87.62  E-value=0.48  Score=31.18  Aligned_cols=30  Identities=7%  Similarity=0.276  Sum_probs=24.6

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++..+ ++++.|+|.|+.
T Consensus        69 ~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  107 (122)
T 1v5q_A           69 RVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV  107 (122)
T ss_dssp             CEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECC
Confidence            3899987        67888888765 899999999844

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=87.21  E-value=0.95  Score=28.20  Aligned_cols=28  Identities=18%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        .++.++++. +++++.|+|.|+
T Consensus        61 ~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~   96 (98)
T 1ihj_A           61 RILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTF   96 (98)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeC
Confidence            4999998        567778876 899999999984

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=86.96  E-value=1.2  Score=27.66  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=23.2

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++ .+++++.|+|.|++
T Consensus        54 ~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~   90 (97)
T 1n7e_A           54 RILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQT   90 (97)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCC
Confidence            4999998        56777777 57899999999844

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=86.71  E-value=1.6  Score=34.65  Aligned_cols=42  Identities=19%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCC-eEEEEEEecC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQ-DVRTVNITPS  134 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~-~~~~v~v~p~  134 (163)
                      .|++||+        +++.++++..+|+++.|+|.|.+.. ..+++++++.
T Consensus       122 ~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~  172 (388)
T 1fc6_A          122 VIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ  172 (388)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred             EEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence            4999998        4677888877899999999984321 2778888764

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=86.54  E-value=0.75  Score=30.25  Aligned_cols=32  Identities=13%  Similarity=0.383  Sum_probs=25.5

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKT  123 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~  123 (163)
                      +|.   |++||+        ++|.++++.. ++++.|+|.|++.
T Consensus        67 GD~---Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~  106 (118)
T 2yub_A           67 GDR---ILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV  106 (118)
T ss_dssp             TCC---EEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred             CCE---EEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence            455   999998        5788888877 8899999998443

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=86.53  E-value=1.1  Score=27.10  Aligned_cols=28  Identities=4%  Similarity=0.173  Sum_probs=22.2

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r  120 (163)
                      .|++||+        +++.++++..+ ++++.|+|.|
T Consensus        49 ~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           49 VIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            4999998        57778888754 8899999865

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=86.31  E-value=4.6  Score=25.57  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=25.9

Q ss_pred             cccceEEEeeeCc--------hHHHHHHHccC-CCeEEEEEEeCC
Q psy18011         87 ANENVWHILDQDN--------DTLKELLKNGI-DKELKMAVYSSK  122 (163)
Q Consensus        87 ~~~~~~~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~~  122 (163)
                      .+|.   |++||+        +++++++++.+ +.+++|.+.+..
T Consensus        49 vGD~---I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~   90 (95)
T 3gge_A           49 VGDH---IESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK   90 (95)
T ss_dssp             TTCE---EEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             CCCE---EEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence            4566   999998        89999999865 678888887643

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=86.12  E-value=1.4  Score=27.43  Aligned_cols=31  Identities=13%  Similarity=0.127  Sum_probs=24.3

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQ  124 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~  124 (163)
                      .|++||+        +++..+++ .+++++.|++.|.++.
T Consensus        57 ~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~   95 (99)
T 3khf_A           57 LITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALENT   95 (99)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCSS
T ss_pred             EEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCCc
Confidence            3999988        66777777 4789999999985443

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=85.69  E-value=1.4  Score=28.81  Aligned_cols=29  Identities=7%  Similarity=0.169  Sum_probs=24.2

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++..+ ++++.|+|.|+
T Consensus        68 ~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  105 (123)
T 1ueq_A           68 VIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            4999998        67888888764 89999999984

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=85.54  E-value=0.98  Score=28.87  Aligned_cols=29  Identities=14%  Similarity=0.205  Sum_probs=24.0

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++..++.++.|+|.|.
T Consensus        68 ~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~  104 (108)
T 2d92_A           68 RLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             EEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            3999998        6788888887778999999874

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=85.48  E-value=0.87  Score=28.74  Aligned_cols=28  Identities=0%  Similarity=0.156  Sum_probs=23.7

Q ss_pred             EEeeeCc--------hHHHHHHHcc-CCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNG-IDKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~-~~~~v~l~v~r  120 (163)
                      .|++||+        +++.++++.. ++.++.|+|.|
T Consensus        61 ~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   97 (101)
T 2yt7_A           61 RLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVH   97 (101)
T ss_dssp             EEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEe
Confidence            4999998        7888999875 78999999976

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=85.34  E-value=1.5  Score=28.68  Aligned_cols=29  Identities=10%  Similarity=0.454  Sum_probs=23.5

Q ss_pred             EEeeeCc--------hHHHHHHHcc-CCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNG-IDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~-~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++.. +++++.|+|.|+
T Consensus        82 ~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  119 (121)
T 2kom_A           82 RLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ  119 (121)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred             EEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeC
Confidence            4999998        5777888875 489999999984

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=85.20  E-value=1.3  Score=29.37  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=24.4

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++..+++++.|+|.|.
T Consensus        81 ~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~  117 (130)
T 1i16_A           81 EILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             CEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence            3999998        6778888887888999999884

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=85.17  E-value=1.6  Score=27.82  Aligned_cols=30  Identities=10%  Similarity=0.452  Sum_probs=24.2

Q ss_pred             EEeeeCc--------hHHHHHHHcc-CCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNG-IDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~-~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++.. +++++.|+|.|++
T Consensus        63 ~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  101 (111)
T 2koj_A           63 RLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE  101 (111)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            4999998        5778888875 5899999999843

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=85.12  E-value=1.3  Score=27.81  Aligned_cols=28  Identities=14%  Similarity=0.312  Sum_probs=23.5

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      .|++||+        +++.+.++..+++++.|.|.|
T Consensus        68 ~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R  103 (104)
T 3sfj_A           68 KIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR  103 (104)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEE
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEc
Confidence            3999998        478888887788999999987

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=84.89  E-value=1.2  Score=29.68  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=24.1

Q ss_pred             EEeeeCc--------hHHHHHHHc-cCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKN-GIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~-~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++. .+|+++.|+|.|+
T Consensus        73 ~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           73 VLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             BEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             EEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            3999998        678888887 4699999999983

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=84.86  E-value=1.5  Score=27.55  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=24.0

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQ  124 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~  124 (163)
                      .|++||+        +++.++++..+ .++.|+|.|.+.+
T Consensus        63 ~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~~  101 (103)
T 2fcf_A           63 RIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSIIST  101 (103)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCCC
Confidence            4999998        57888888764 4899999985543

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=84.80  E-value=0.67  Score=29.37  Aligned_cols=30  Identities=10%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++..+ +.++.|+|.|++
T Consensus        58 ~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   96 (103)
T 1uep_A           58 ELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCC
Confidence            4999998        57778887754 889999999843

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=84.74  E-value=0.18  Score=39.21  Aligned_cols=40  Identities=15%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCC
Q psy18011         93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNS  136 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~  136 (163)
                      .|+++|+      ++|.++++.  ++++.|+|.|  +++.++++++|...
T Consensus       277 ~I~~ing~~v~~~~~~~~~l~~--~~~v~l~v~R--~g~~~~~~v~p~~~  322 (332)
T 3num_A          277 VIISINGQSVVSANDVSDVIKR--ESTLNMVVRR--GNEDIMITVIPEEI  322 (332)
T ss_dssp             --------------------------------------------------
T ss_pred             EEEEECCEECCCHHHHHHHHhC--CCeEEEEEEE--CCEEEEEEEEEeee
Confidence            4888888      667777764  7889999998  66778888998753

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=84.47  E-value=1.7  Score=26.56  Aligned_cols=29  Identities=10%  Similarity=0.294  Sum_probs=23.3

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++.. +.++.|+|.|.+
T Consensus        51 ~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~   87 (90)
T 2he4_A           51 RLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPS   87 (90)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccC
Confidence            3999987        5788888875 889999999843

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=84.42  E-value=1.5  Score=29.24  Aligned_cols=30  Identities=10%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             EEeeeCc--------hHHHHHHHcc-CCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNG-IDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~-~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++.. +++.+.|+|.|.+
T Consensus        89 ~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           89 EVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            4999998        6788888876 6899999999843

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=84.41  E-value=1.6  Score=27.05  Aligned_cols=29  Identities=10%  Similarity=0.207  Sum_probs=23.2

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        .++.++++..+ +++.|+|.|++
T Consensus        53 ~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g   89 (94)
T 1vb7_A           53 IIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSS   89 (94)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECC
Confidence            3999997        67788888765 88999999843

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=84.24  E-value=1.9  Score=26.19  Aligned_cols=28  Identities=18%  Similarity=0.205  Sum_probs=21.8

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        .++.++++.. ++++.|+|.|+
T Consensus        50 ~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   85 (88)
T 2uzc_A           50 VVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRE   85 (88)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence            3999998        4666777754 88999999884

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=84.20  E-value=1.4  Score=29.10  Aligned_cols=29  Identities=3%  Similarity=0.172  Sum_probs=24.2

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~  121 (163)
                      .|++||+        .++.++++..+ ++++.|+|.|+
T Consensus        67 ~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  104 (129)
T 2kpk_A           67 VIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG  104 (129)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            4999998        57888888765 89999999984

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=84.19  E-value=1.3  Score=28.40  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             EEeeeCc--------hHHHHHHHcc--CCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNG--IDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~--~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++..  +++++.|+|.|..
T Consensus        57 ~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~   96 (108)
T 3cbz_A           57 MLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG   96 (108)
T ss_dssp             EEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCC
Confidence            4999998        6788888876  4567999999843

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=84.05  E-value=0.97  Score=28.60  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=23.7

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEeCCC
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYSSKT  123 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~  123 (163)
                      |++||+        +++.++++.. ++++.|+|.|++.
T Consensus        53 I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~   89 (103)
T 1v5l_A           53 ILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET   89 (103)
T ss_dssp             EEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred             EEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence            999987        6778888876 8999999998543

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=83.60  E-value=1.6  Score=28.17  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.+++++.+++++.|+|.|.
T Consensus        67 ~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~  103 (109)
T 2vsv_A           67 YIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSL  103 (109)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence            3999997        5788888877777799999874

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=83.42  E-value=2  Score=27.12  Aligned_cols=30  Identities=13%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKT  123 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~  123 (163)
                      .|++||+        .++.++++.. +.++.|+|.|...
T Consensus        62 ~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~   99 (105)
T 1wha_A           62 RVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREAG   99 (105)
T ss_dssp             EEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence            4999998        5667777754 7889999998543

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=83.05  E-value=1.5  Score=28.30  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        +++.++++. +++++.|+|.|.
T Consensus        67 ~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~  102 (114)
T 1uew_A           67 RILAVNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQ  102 (114)
T ss_dssp             BEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            3999998        678888886 889999999884

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=82.86  E-value=0.3  Score=31.61  Aligned_cols=40  Identities=8%  Similarity=0.155  Sum_probs=27.8

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN  135 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~  135 (163)
                      .|++||+        .++..+++. +++++.|.|.|+  +...+++++|..
T Consensus        59 ~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~--~~~~~~~v~p~~  106 (113)
T 2g5m_B           59 LLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRE--RPGEQSEVAQLI  106 (113)
T ss_dssp             BEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEEEC--CCCTTSSCSSCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeC--CCCCcchhhhhh
Confidence            3999998        455566665 588999999984  444555666643

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=82.36  E-value=1.7  Score=28.57  Aligned_cols=29  Identities=21%  Similarity=0.395  Sum_probs=24.4

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++. ++.++.|.|.|++
T Consensus        70 ~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~  106 (129)
T 2dmz_A           70 KIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVRRK  106 (129)
T ss_dssp             BEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEEES
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4999997        678888887 8899999999854

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.34  E-value=1.9  Score=27.15  Aligned_cols=29  Identities=10%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        .++.++++. +++++.|+|.|++
T Consensus        62 ~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g   98 (104)
T 2djt_A           62 LVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPL   98 (104)
T ss_dssp             BEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            3999998        456666665 7899999998843

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.01  E-value=2.7  Score=26.09  Aligned_cols=28  Identities=21%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      |++||+        .++..+++. +++++.|+|.|+.
T Consensus        54 Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   89 (96)
T 2edv_A           54 ILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT   89 (96)
T ss_dssp             EEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred             EEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            999998        445566665 7899999999854

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=81.62  E-value=0.96  Score=27.69  Aligned_cols=29  Identities=21%  Similarity=0.219  Sum_probs=23.0

Q ss_pred             EEeeeCc--------hHHHHHHHc-cCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKN-GIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~-~~~~~v~l~v~r~  121 (163)
                      .|++||+        ++|.++++. .+++++.|+|.|+
T Consensus        51 ~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           51 EIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             EEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence            3889887        677888876 3688999999984

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=81.53  E-value=1.8  Score=27.38  Aligned_cols=29  Identities=21%  Similarity=0.398  Sum_probs=23.1

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        .++.++++. +++++.|+|.|.+
T Consensus        68 ~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~  104 (108)
T 2jre_A           68 KILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRRL  104 (108)
T ss_dssp             EEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            5999998        567777776 7889999999843

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=81.35  E-value=0.73  Score=29.07  Aligned_cols=29  Identities=10%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        +++.++++. +++++.|+|.|.+
T Consensus        53 ~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~   89 (102)
T 2d90_A           53 LVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE   89 (102)
T ss_dssp             EEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTT
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence            3999998        467777776 5889999998743

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=81.25  E-value=2  Score=27.88  Aligned_cols=28  Identities=11%  Similarity=0.329  Sum_probs=22.5

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        .++.++++. +++++.|+|.|+
T Consensus        73 ~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~  108 (117)
T 1ujd_A           73 QVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD  108 (117)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred             EEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence            4999998        566777776 788999999984

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=81.02  E-value=3.5  Score=25.48  Aligned_cols=29  Identities=17%  Similarity=0.507  Sum_probs=21.7

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        .++.++++. .++++.|+|.|++
T Consensus        54 ~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~   90 (98)
T 2opg_A           54 QILEVNGIDLRKATHDEAINVLRQ-TPQRVRLTLYRDE   90 (98)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEECS
T ss_pred             EEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCC
Confidence            4999998        456666665 4589999999854

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=81.01  E-value=2.8  Score=25.79  Aligned_cols=28  Identities=14%  Similarity=0.259  Sum_probs=22.2

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        .++.++++. +++++.|+|.|+
T Consensus        57 ~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~   92 (96)
T 1d5g_A           57 RVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKG   92 (96)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence            4999998        566677775 688999999884

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=80.86  E-value=2.7  Score=25.49  Aligned_cols=29  Identities=10%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSK  122 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~  122 (163)
                      .|++||+        .++.++++. .++++.|+|.|++
T Consensus        50 ~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   86 (89)
T 2q3g_A           50 WVLSIDGENAGSLTHIEAQNKIRA-CGERLSLGLSRAI   86 (89)
T ss_dssp             EEEEETTEEGGGCCHHHHHHHHHT-CTTEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEeCC
Confidence            3999998        455566665 4788999999843

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.04  E-value=2.9  Score=25.76  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        .++...++. +++++.|+|.|+
T Consensus        55 ~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~   90 (94)
T 2eeg_A           55 LIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSG   90 (94)
T ss_dssp             EEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            3999998        345566665 788999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	6e-04

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 1  VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
          V        AG+      +  +D+  ++  +  +  +        + +      +   RT
Sbjct: 23 VVAGGAAANAGVPK-GVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQ-DPSGGSRT 80

Query: 61 VNIT 64
          V +T
Sbjct: 81 VQVT 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.47
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.44
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.38
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	99.38
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	99.36
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.35
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.35
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.35
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.32
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.16
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.02
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.0
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.98
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.95
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.93
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.86
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.85
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.84
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.82
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.8
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.79
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.78
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.75
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.73
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.73
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.7
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.69
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.68
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.68
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.66
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.66
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.65
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.64
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.64
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.62
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.62
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.6
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.6
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.6
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.6
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.59
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.59
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.58
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.57
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.54
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.54
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.52
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.52
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.5
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.5
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.48
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.47
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.46
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.45
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.44
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.42
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.42
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.36
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.35
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.28
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.11
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.4
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	96.32
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	96.06
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	95.56
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	95.43
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	95.08
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	93.18
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	92.69
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	92.24
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	90.66
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	90.39
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	89.38
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	88.96
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	88.93
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	85.68
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	85.58
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	85.17
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	84.68
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	84.32
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	84.24
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	83.62
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	83.38
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	82.74
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	82.28
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	81.03
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	80.24
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	80.17

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=6.3e-14  Score=89.14  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHH-HhCCCCeEEEEEEEC-CCceEEEEEEc
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELL-KNGIDKELKMAVYSS-KTQDVRTVNIT   64 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l-~~~~~~~v~l~v~r~-~~~~~~~v~~~   64 (163)
                      |.|+|||++|||++ ||+|++|||++|.++.+ +...+ ...+++.+.|+|+|. +  +.+++++.
T Consensus        23 V~~~spA~~aGl~~-GD~I~~ing~~i~~~~~-~~~~i~~~~~g~~v~l~v~r~~g--~~~~v~vt   84 (88)
T d2z9ia1          23 VVAGGAAANAGVPK-GVVVTKVDDRPINSADA-LVAAVRSKAPGATVALTFQDPSG--GSRTVQVT   84 (88)
T ss_dssp             ECTTSTTGGGTCCT-TCEEEEETTEECCSHHH-HHHHHHTSCTTCEEEEEEEETTT--EEEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEeCCCcCCcHHH-HHHHHHhCCCCCEEEEEEEECCC--CEEEEEEE
Confidence            46899999999999 99999999999999965 55555 456788999999994 5  44444443

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=89.79  Aligned_cols=60  Identities=27%  Similarity=0.437  Sum_probs=51.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS   66 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~   66 (163)
                      |.++|||++|||++ ||+|++|||++|.+|+| +...+.  .++++.++|+|++  +..++++.|+
T Consensus        38 V~~~spA~~aGl~~-GDiI~~ing~~V~s~~d-l~~~l~--~g~~v~l~v~R~g--~~~~~~v~pe   97 (100)
T d1lcya1          38 VILGSPAHRAGLRP-GDVILAIGEQMVQNAED-VYEAVR--TQSQLAVQIRRGR--ETLTLYVTPE   97 (100)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECCSHHH-HHHHHT--TCSSEEEEEEETT--EEEEEEECCE
T ss_pred             ECCCchHhhcCCCC-CcEEEEECCEEcCCHHH-HHHHhc--CCCEEEEEEEECC--EEEEEEEEee
Confidence            46899999999999 99999999999999965 666664  5788999999988  6677777664

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.1e-13  Score=89.94  Aligned_cols=61  Identities=20%  Similarity=0.267  Sum_probs=46.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHH-HhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELL-KNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l-~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      |.++|||++|||++ ||+|++|||++|.++.+ +...+ ....++++.++++|++...+.++++
T Consensus        33 V~~~spA~~aGl~~-GDiI~~ing~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l   94 (99)
T d1sota1          33 VSPDGPAANAGIQV-NDLIISVDNKPAISALE-TMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI   94 (99)
T ss_dssp             CCSSSTTTSSSCCT-TCEECBSSSSBCCCSHH-HHHHHHHSCTTCEEEECC-----CCCEEEEC
T ss_pred             ecCCCCHHHcCCCc-ceEEEEECCEecccHHH-HHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence            57899999999999 99999999999999966 55555 5577899999999988554455544

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=2e-13  Score=89.28  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI   79 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~   79 (163)
                      |.+||||+++ |++ ||+|++|||++|.+|.| +..++.. .+|+.+.|+|+|++  +..++...|+.  ...+.+|+.+
T Consensus        10 V~~~sPA~~~-L~~-GD~I~~ing~~v~~~~~-l~~~i~~~~~G~~v~l~v~R~~--~~~~l~~~p~~--~~~~~iGi~~   82 (103)
T d2hgaa1          10 VVPGSPASKV-LTP-GLVIESINGMPTSNLTT-YSAALKTISVGEVINITTDQGT--FHLKTGRNPNN--SSRAYMGIRT   82 (103)
T ss_dssp             ECSSSGGGGT-SCT-TCEEEEETTEECSSHHH-HHHHHTTCCTTCEEEEEETTEE--EEEECCBCSSS--CCSCBCCEEE
T ss_pred             ECCCChHHhc-CCC-CCEEEEECCEEcCCHHH-HHHHHhhCCCCCEEEEEEEECC--EEEEEEeccCC--CCceEEEEEe
Confidence            4689999986 999 99999999999999965 7777765 57899999999865  43444433432  2356789876


Q ss_pred             ee
Q psy18011         80 RF   81 (163)
Q Consensus        80 ~~   81 (163)
                      ..
T Consensus        83 ~~   84 (103)
T d2hgaa1          83 SN   84 (103)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=99.36  E-value=6e-13  Score=84.36  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      +.++|||++|||++ ||+|++|||+++.++.+ +..++.. ..+.++.++|+|++  +..++++
T Consensus        26 v~~~s~~~~aGl~~-GDiI~~ing~~v~~~~~-~~~~~~~~~~~~~~~l~v~R~g--~~~~i~v   85 (87)
T d2i6va1          26 GKDPVLFESIGLQD-GDMAVALNGLDLTDPNV-MNTLFQSMNEMTEMSLTVERDG--QQHDVYI   85 (87)
T ss_dssp             CSCHHHHHHTTCCT-TCEEEEETTEETTCHHH-HHHHHHTGGGCSEEEEEEEETT--EEEEEEE
T ss_pred             CCCCCHHHHCCCCC-CCEEEEECCEEeecHHH-HHHHHHhhccccccEEEEEECC--EEEEEEE
Confidence            45789999999999 99999999999999965 6677754 56789999999998  5566554

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.35  E-value=1.3e-12  Score=83.53  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=47.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCce-EEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQD-VRTVNI   63 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~-~~~v~~   63 (163)
                      |.+||||++|||++ ||+|++|||+++.++. +....++...++.++.|++.|.+... .+++++
T Consensus        26 v~~gsPA~~AGl~~-GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~~~~~~~~l   89 (92)
T d1fc6a3          26 PAPGGPAEKAGARA-GDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQL   89 (92)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEE
T ss_pred             ecCCCChhHHhhHc-CCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCcCcEEEEEE
Confidence            35899999999999 9999999999999763 23445565567789999999976332 234444

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=4.7e-13  Score=85.02  Aligned_cols=51  Identities=18%  Similarity=0.354  Sum_probs=44.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.|+|||++|||++ ||+|++|||++|.++.+ +..++.. .+..+.++|+|++
T Consensus        32 V~~~spA~~aGl~~-GDvI~~ing~~v~~~~~-~~~~l~~-~~~~v~l~v~R~~   82 (88)
T d1ky9b2          32 VKTGTPAAQIGLKK-GDVIIGANQQAVKNIAE-LRKVLDS-KPSVLALNIQRGD   82 (88)
T ss_dssp             CCSSCTTGGGTCCS-SCEEEEETTEECSSHHH-HHHHTTT-CCSCCCEEEESSS
T ss_pred             ECCCCHHHHcCCCC-CcEEEEECCEEcCCHHH-HHHHHHh-CCCEEEEEEEECC
Confidence            57899999999999 99999999999999954 6677765 4467899999977

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.35  E-value=1.6e-12  Score=82.95  Aligned_cols=58  Identities=17%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             CCChhhhcCC-ccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011          3 DNSPGQKAGL-EAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNI   63 (163)
Q Consensus         3 ~~SpA~~AGL-~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~   63 (163)
                      ++|||++||| ++ ||+|++|||+++.+|.+ +..++...++.++.|++.|.+. ..+++.+
T Consensus        29 ~~sPa~~aGl~k~-GD~I~~IdG~~v~~~~~-~~~~l~g~~G~~V~L~i~R~g~-~~r~~~V   87 (91)
T d1k32a1          29 EKSPIFEYGIDPT-GYLIEDIDGETVGAGSN-IYRVLSEKAGTSARIRLSGKGG-DKRDLMI   87 (91)
T ss_dssp             CBCGGGGGTCCCT-TCEEEEETTEECBTTBC-HHHHHHTTTTSEEEEEEECSSS-CEEEEEE
T ss_pred             cCChhHhcCCCCC-CCEEEEECCEeecCcce-eEEEEecCCCCEEEEEEEeCCC-CEEEEEE
Confidence            4699999999 89 99999999999999965 7788888899999999999653 3344444

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.7e-13  Score=88.18  Aligned_cols=58  Identities=22%  Similarity=0.313  Sum_probs=48.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVN   62 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~   62 (163)
                      |.++|||++|||++ ||+|++|||++|.++.+ +..++.. .+++++.++|+|++  +..+++
T Consensus        34 V~~~spA~~aGl~~-gDvI~~i~g~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~   92 (94)
T d1ky9a1          34 VLPNSSAAKAGIKA-GDVITSLNGKPISSFAA-LRAQVGTMPVGSKLTLGLLRDG--KQVNVN   92 (94)
T ss_dssp             CTTCSSSTTTTCCT-TCEECBSSSSBCCSSHH-HHHHTTSSBTTCCCEEEEESSS--CEEECC
T ss_pred             CCCChhHHHhCCCc-ccEEEEECCEEeCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEE
Confidence            57899999999999 99999999999999965 6677764 46788999999987  445443

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.4e-11  Score=74.35  Aligned_cols=50  Identities=18%  Similarity=0.411  Sum_probs=40.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||++|||++ ||+|++|||+++.+|.. ....++.. .+.++.|+|+|
T Consensus        25 V~~gspA~~aGL~~-GD~Il~Vng~~v~~~~~~~v~~~i~~-~~~~v~L~v~R   75 (77)
T d2f5ya1          25 VDSGGPAERAGLQQ-LDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWR   75 (77)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEE
Confidence            46899999999999 99999999999999853 23455554 45779999987

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.9e-10  Score=72.16  Aligned_cols=51  Identities=25%  Similarity=0.356  Sum_probs=42.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||++|||++ ||+|++|||+++..+. +....++...++..+.+++.+
T Consensus        32 v~~gspA~~aGL~~-GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          32 VQANSPASLVGLRF-GDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             ECCCCHHHHcCCCC-ccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            46899999999999 9999999999999874 345677777777888888853

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.5e-10  Score=71.66  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=41.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++||++ ||+|++|||+++.++.. ....++.. .+.++.|+|.|.+
T Consensus        32 v~~gs~A~~~~L~~-GD~Il~VNg~~v~~~s~~ev~~~i~~-~~~~v~L~V~R~~   84 (85)
T d1rgwa_          32 ITPGSKAAQSQLSQ-GDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKSK   84 (85)
T ss_dssp             ECTTSHHHHSSCCC-CSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred             ecCCChHHhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence            46899999999999 99999999999998742 23455554 3467999999865

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=4e-10  Score=73.21  Aligned_cols=50  Identities=16%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||++|||++ ||+|++|||+++.+|. +....++.. .+..+.|+|.+
T Consensus        50 v~~g~~A~~aGL~~-GD~Il~INg~~v~~~~h~evv~~ik~-~~~~v~L~V~~  100 (104)
T d1q3oa_          50 VDEGGVAWRAGLRM-GDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVM  100 (104)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHH-TTTEEEEEEEE
T ss_pred             ECCCCHHHHcCCCC-CCEEEEEcCeEcCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence            46899999999999 9999999999999994 235566665 45779998876

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.2e-10  Score=71.80  Aligned_cols=51  Identities=20%  Similarity=0.418  Sum_probs=41.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+||||++|||++ ||+|++|||+.+.++.. ....++.. .+..+.|+|.|+
T Consensus        46 V~~gg~A~~~GL~~-GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~   97 (97)
T d1x5qa1          46 VSEEGPAARAGVRV-GDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE   97 (97)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred             ECCCChhHhhcccC-CCEEEEECCEECCCCCHHHHHHHHhC-CCCEEEEEEEEC
Confidence            46899999999999 99999999999998842 22344544 567899999884

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=8.3e-10  Score=70.05  Aligned_cols=51  Identities=16%  Similarity=0.408  Sum_probs=41.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||+++||++ ||+|++|||+++.++.. ....++. ..+..+.|+|.|+
T Consensus        39 V~~~g~A~~~gL~~-GD~Il~VNg~~v~~~t~~~~~~~l~-~~~~~v~L~v~R~   90 (91)
T d1m5za_          39 IRPAGPGDLGGLKP-YDRLLQVNHVRTRDFDCCLVVPLIA-ESGNKLDLVISRN   90 (91)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred             ECCCChhHhCcCCC-CCEEEEECCEECCCCCHHHHHHHHH-CCCCEEEEEEEEC
Confidence            46899999999999 99999999999998853 2334454 3567899999884

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=9.6e-10  Score=70.15  Aligned_cols=52  Identities=19%  Similarity=0.252  Sum_probs=42.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.|+|||+++||++ ||+|++|||+++.+... ....++.. .+..+.|+|.|..
T Consensus        37 v~~gs~A~~~gL~~-GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~   89 (94)
T d1vb7a_          37 VTERGKAEAADLRP-GDIIVAINGQSAENMLHAEAQSKIRQ-SASPLRLQLDRSS   89 (94)
T ss_dssp             BCTTSSHHHHTCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CCSSEEEEEECCC
T ss_pred             ccCCChhhhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            57899999999999 99999999999998752 23455555 4578999999854

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=7.5e-10  Score=72.80  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||+++||++ ||+|++|||+++.++. +....++...++..+.|+|.+
T Consensus        43 V~~~spA~~~GL~~-GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          43 LDPHCSASLAGAKE-GDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CCTTSSHHHHHCCT-TCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             EcCCChHHhcccCc-ccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            57899999999999 9999999999999884 345677777666778887764

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.8e-09  Score=68.57  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.|||||+++| |++ ||+|++|||+++.++. +....++.. .+..+.|+|.|.+
T Consensus        38 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~s~~ea~~~l~~-~~~~v~L~v~R~g   91 (92)
T d1t2ma1          38 VVKGGAADVDGRLAA-GDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQG   91 (92)
T ss_dssp             ECTTSHHHHHTCCCS-SEEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEECC
T ss_pred             EcCCChHHhcCCCCc-ccEeeeeCCeecCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            46899999999 999 9999999999999875 234456655 3577999999864

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.6e-09  Score=67.33  Aligned_cols=50  Identities=12%  Similarity=0.230  Sum_probs=40.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||+++||++ ||+|++|||+++.++. +....++... +..+.|+|..
T Consensus        30 v~~g~~A~~~Gl~~-GD~Il~INg~~v~~~t~~~~~~ll~~~-~~~v~l~v~p   80 (82)
T d1r6ja_          30 IVKDSSAARNGLLT-EHNICEINGQNVIGLKDSQIADILSTS-GTVVTITIMP   80 (82)
T ss_dssp             ECTTSHHHHHTCCS-SEEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred             ECCCChHHhcCcCC-CCEEEEeCCeEEeeCCHHHHHHHHHcC-CCEEEEEEEc
Confidence            46899999999999 9999999999999985 3345666654 4678888764

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.6e-09  Score=67.72  Aligned_cols=51  Identities=22%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|||||++|||++ ||+|++|||+++.+.. +....++.. .+..+.|+|.+.
T Consensus        34 V~~g~~A~~aGl~~-GD~Il~VNg~~v~~~t~~e~~~ll~~-~~~~v~L~v~~~   85 (91)
T d1g9oa_          34 VEPGSPAEKAGLLA-GDRLVEVNGENVEKETHQQVVSRIRA-ALNAVRLLVVDP   85 (91)
T ss_dssp             ECTTSHHHHTTCCT-TCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred             EcCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEECC
Confidence            46899999999999 9999999999999874 235566654 346788888764

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3e-09  Score=67.45  Aligned_cols=52  Identities=23%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.|+|||+++| |++ ||+|++|||+.+.++. +....++... +..+.|+|.|.+
T Consensus        38 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~~~~e~~~~lk~~-~~~v~L~v~Rpg   91 (92)
T d2fe5a1          38 IIEGGAAQKDGRLQI-GDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKPG   91 (92)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             ECCCCChhhcCCCCC-CCEEEEeCCeecCCCCHHHHHHHHHcC-CCEEEEEEECCC
Confidence            46899999999 999 9999999999999874 2344566654 568999999865

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.6e-09  Score=68.27  Aligned_cols=50  Identities=28%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||+++| |++ ||+|++|||+.+.+.. +....++... +..+.|+|+|
T Consensus        43 v~~~s~A~~~G~L~~-GD~Il~VNg~~v~~~t~~ea~~~lk~~-~~~v~L~V~r   94 (96)
T d2fcfa1          43 VLEDSPAGKNGTLKP-GDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQS   94 (96)
T ss_dssp             ECSSSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEEC
T ss_pred             ECCCCHHHHcCCCcC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence            46899999999 999 9999999999999864 3344555543 4678998876

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=5e-09  Score=66.19  Aligned_cols=50  Identities=20%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.|||||+++| |++ ||+|++|||+++.++. +....++... +..+.|+|+|
T Consensus        37 V~~~~~A~~~G~L~~-GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l~v~~   88 (90)
T d1qava_          37 IFKGLAADQTEALFV-GDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY   88 (90)
T ss_dssp             ECTTSHHHHTTCCCT-TEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred             EcCCCceeeCCCCCc-cCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            46899999999 999 9999999999999875 3345566654 4679999876

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.82  E-value=2.9e-09  Score=67.77  Aligned_cols=50  Identities=18%  Similarity=0.414  Sum_probs=40.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.|+|||+++| |++ ||+|++|||+.+..+. +...+++... +..+.|+|.|
T Consensus        42 v~~gs~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~~~~ll~~~-~~~v~L~V~R   93 (94)
T d1ihja_          42 IVPDSPAHLCGRLKV-GDRILSLNGKDVRNSTEQAVIDLIKEA-DFKIELEIQT   93 (94)
T ss_dssp             ECTTSHHHHHCSCCT-TCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred             ECCCCHHHHhCCCCh-hcEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEe
Confidence            46899999999 999 9999999999999864 2345666654 4679999887

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=5e-09  Score=67.29  Aligned_cols=51  Identities=29%  Similarity=0.443  Sum_probs=42.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+.+.++. +....++...+ ..+.|+|.|+
T Consensus        45 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~s~~e~~~ll~~~~-~~v~L~V~r~   97 (99)
T d1p1da2          45 IKKGSVAHRTGTLEL-GDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRKD   97 (99)
T ss_dssp             CCSSSHHHHTSCCCT-TCEEEEETTEEGGGCCHHHHHHHHHHCT-TCEEEEEECC
T ss_pred             EcCCchhhhcCCCCC-CCEEEeeCCEECCCCCHHHHHHHHHcCC-CeEEEEEEeC
Confidence            57899999999 999 9999999999999774 34556676654 5699999875

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=3.7e-09  Score=67.86  Aligned_cols=51  Identities=14%  Similarity=0.290  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||+++| |++ ||+|++|||+++.++. +....++... +..+.|+|.|.
T Consensus        44 V~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~s~~~a~~~lk~~-~~~v~L~v~R~   96 (99)
T d1ozia_          44 IIPKGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKG   96 (99)
T ss_dssp             ECSSSHHHHHTCCCT-TCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEECC
T ss_pred             ECCCChHHhcCCCCc-cCEEEEECCEEcCCCCHHHHHHHHHCC-CCeEEEEEEeC
Confidence            46899999999 999 9999999999999764 2344566654 57899999885

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=4.1e-09  Score=66.93  Aligned_cols=51  Identities=16%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+||||+++| |++ ||+|++|||+.+.+.. +....++.. .+..+.|+|.|.
T Consensus        38 V~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~L~v~R~   90 (93)
T d1rgra_          38 IIPGGAAAQDGRLRV-NDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR   90 (93)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECSSSCHHHHHHHHHH-TTTEEEEEEECS
T ss_pred             ECCCChHHhcCCCCc-CcEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence            46899999999 999 9999999999999863 334456655 356899999884

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.5e-09  Score=66.87  Aligned_cols=51  Identities=22%  Similarity=0.362  Sum_probs=41.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||+++| |++ ||+|++|||+.+.++. +....++... +..+.|+|.|.
T Consensus        40 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~   92 (94)
T d1wf8a1          40 VTEGGAAQRDGRIQV-NDQIVEVDGISLVGVTQNFAATVLRNT-KGNVRFVIGRE   92 (94)
T ss_dssp             ECTTCHHHHHCSSCT-TCBEEEETTEECBSCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred             ECCCChHHHcCCCCc-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            46899999999 999 9999999999998764 2344666654 46799999874

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.8e-09  Score=64.67  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.|||||+++||++ ||+|++|||+++.++. +....++... +..+.|++.
T Consensus        27 V~~gs~A~~~gL~~-GD~Il~INg~~v~~~~~~~~~~ll~~~-~~~v~l~vi   76 (79)
T d1y7na1          27 LMRGGIAERGGVRV-GHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKTM   76 (79)
T ss_dssp             ECTTSHHHHHTCCS-SCEEEEETTEECTTSCHHHHHHHHHHC-CEEEEEEEE
T ss_pred             EcCCCHHHHCCCCC-CCEEEEECCEEeCCCCHHHHHHHHHcC-CCEEEEEEE
Confidence            46899999999999 9999999999999874 3455666654 356777765

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=66.33  Aligned_cols=52  Identities=15%  Similarity=0.345  Sum_probs=41.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.|+|||+++| |++ ||+|++|||+++.++. +....++... ...+.|+|.|..
T Consensus        45 v~~gs~A~~~G~L~~-GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~R~~   98 (105)
T d1whaa_          45 IAEGGAAHRAGTLQV-GDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CCTTSSHHHHSSCCT-TCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             EcCCCchhhcCCccC-CCEEEEECCEEcCCCcHHHHHHHHHcC-CCeEEEEEEECC
Confidence            57899999999 999 9999999999999875 2344555543 467999999853

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=7.6e-09  Score=67.03  Aligned_cols=50  Identities=26%  Similarity=0.403  Sum_probs=40.1

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||+++||++ ||+|++|||+.+.++. +....++...  ..+.++|+|.
T Consensus        48 V~~~s~A~~~GL~~-GD~Il~VNg~~v~~~~~~ev~~llk~~--~~v~l~V~~~   98 (104)
T d1wi2a_          48 VIPDSDAHRAGLQE-GDQVLAVNDVDFQDIEHSKAVEILKTA--REISMRVRFF   98 (104)
T ss_dssp             ECTTSHHHHHTCCT-TCEEEEETTEECSSCCHHHHHHHHHHS--SSEEEEEECC
T ss_pred             ECCCChhHhccccc-CCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEEC
Confidence            46899999999999 9999999999999874 2345666653  3588888763

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1e-08  Score=66.28  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++||++ ||+|++|||+.+.++.. ....++.. ....+.|+|.|.+
T Consensus        36 v~~g~~A~~~~L~~-GD~Il~VNg~~v~~~~~~e~v~ll~~-~~~~v~l~V~R~~   88 (103)
T d1v5la_          36 ITPGSKAAAANLCP-GDVILAIDGFGTESMTHADAQDRIKA-ASYQLCLKIDRAE   88 (103)
T ss_dssp             BCTTSTTGGGTCCT-TCBEEEETTEECSSCCHHHHHHHHTT-CCSEEECEECCCT
T ss_pred             ccCCChHHhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence            46899999999999 99999999999998852 23345544 4578999999854

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.8e-09  Score=66.62  Aligned_cols=52  Identities=17%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCC-CCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI-DKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~-~~~v~l~v~r~   53 (163)
                      |.++|||+++| |++ ||+|++|||+.+.++. +...+++...+ +..+.|+|.|.
T Consensus        41 v~~g~~A~~~G~L~~-GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~   95 (103)
T d1uepa_          41 VIAMGSADRDGRLHP-GDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK   95 (103)
T ss_dssp             ECTTSTTGGGTCCCT-TCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ECCCChHHHcCCCCc-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            46899999999 999 9999999999999875 33456665433 35788988873

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.2e-08  Score=63.76  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++| |++ ||+|++|||+.+.++. +....++... +..+.|+|.|..
T Consensus        35 I~~g~~A~~~g~L~~-GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~r~~   88 (95)
T d1n7ea_          35 LTKGGLAERTGAIHI-GDRILAINSSSLKGKPLSEAIHLLQMA-GETVTLKIKKQT   88 (95)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             ECCCChHHhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            46899999999 999 9999999999999885 2345666654 567999998853

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.3e-08  Score=68.17  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=43.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~~   54 (163)
                      |.|+|||+++| |++ ||+|++|||+.+..+. +...+++... .+..+.|+|.|..
T Consensus        56 v~~gg~A~~~G~l~~-GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~  111 (126)
T d1wifa_          56 LINKGAAASDGILQP-GDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             CCTTSSGGGCSSSCT-TCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSS
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCC
Confidence            56899999999 999 9999999999999864 2355677654 4679999999864

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=4.4e-08  Score=63.98  Aligned_cols=50  Identities=18%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCC-CeEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGID-KELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~-~~v~l~v~   51 (163)
                      |.+||||++|| |++ ||+|++|||+.+.++. +....++....+ ..+.+.+.
T Consensus        33 v~~ggpA~~~G~L~~-GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l~~~   85 (112)
T d1qaua_          33 LIRGGAAEQSGLIQA-GDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR   85 (112)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE
T ss_pred             EcCCCHHHHhhhccc-ccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEEEEe
Confidence            46899999999 999 9999999999999874 234566766544 34444433

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.3e-08  Score=63.92  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=39.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||+++| |++ ||+|++|||+++.++. +....++... ..++.|++.+
T Consensus        32 v~~gg~A~~~g~l~~-GD~Il~INg~~v~~~~~~~~~~ll~~~-~~~v~L~i~p   83 (88)
T d1kwaa_          32 IMHGGMIHRQGTLHV-GDEIREINGISVANQTVEQLQKMLREM-RGSITFKIVP   83 (88)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEEGGGSCHHHHHHHHHHC-CEEEEEEEEC
T ss_pred             ECCCCHHHHcCCCcc-CcEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEe
Confidence            46899999999 999 9999999999998775 3455666654 3567787764

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.2e-08  Score=67.43  Aligned_cols=52  Identities=17%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.+||||+++||++ ||+|++|||+++.++.. ....++. ..+..+.|++.|..
T Consensus        49 V~~gs~A~~~gL~~-GD~Il~INg~~v~~~~~~~~~~~l~-~~~~~v~l~v~~~p  101 (117)
T d1uita_          49 VTVGSIAHQAGLEY-GDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNP  101 (117)
T ss_dssp             ECTTSHHHHHTCCT-TCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCS
T ss_pred             EecCChHHhCCCCC-CCEeeeECCcccCCCCHHHHHHHHH-CCCCeEEEEEEECC
Confidence            46899999999999 99999999999999842 2333343 34577888887643

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.65  E-value=2.1e-08  Score=64.24  Aligned_cols=50  Identities=14%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.|+|||+++| |++ ||+|++|||+++.++. +....++... +..+.|+|.+
T Consensus        45 v~~gg~A~~~G~l~~-GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~p   96 (98)
T d1rzxa_          45 LVPGGLAESTGLLAV-NDEVIEVNGIEVAGKTLDQVTDMMVAN-SSNLIITVKP   96 (98)
T ss_dssp             ECTTCHHHHHTCCCT-TCEEEEETTEECTTCCHHHHHHHHHHT-CTEEEEEEEC
T ss_pred             ECCCChHHhcCcCCC-CcEEeeECCEECCCCCHHHHHHHHHcC-CCeEEEEEEe
Confidence            46899999999 999 9999999999999874 2345566554 4568888764

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.1e-08  Score=61.75  Aligned_cols=49  Identities=22%  Similarity=0.344  Sum_probs=37.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCC-CeEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGID-KELKMAV   50 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~-~~v~l~v   50 (163)
                      |.|+|||+++| |++ ||+|++|||+.+.++. +....++....+ ..+.|+|
T Consensus        33 v~~gg~A~~~G~l~~-GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          33 MMHGGPAEKSGKLNI-GDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             ECTTCHHHHHCSCCT-TCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             eCCCCHHHHcCCCCc-CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            46899999999 999 9999999999999875 234566665443 4566665

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.4e-08  Score=64.87  Aligned_cols=51  Identities=24%  Similarity=0.426  Sum_probs=40.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+++.+.. +...+++... +..+.|+|.|.
T Consensus        48 V~~gs~A~~~G~L~~-GD~Il~VNg~~v~~~t~~eav~~lk~~-~~~v~l~v~r~  100 (107)
T d1uhpa_          48 IVDSGPAAKEGGLQI-HDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRR  100 (107)
T ss_dssp             ECSSSHHHHTTCCCS-SCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEEC
T ss_pred             ECCCCHHHHhCCCcc-eeEEeEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEEC
Confidence            46899999999 999 9999999999999864 3345666554 45688888874

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.8e-08  Score=65.60  Aligned_cols=51  Identities=12%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.++|||+++| |++ ||+|++|||+++.++. +....++... ...+.|+|+|.
T Consensus        56 V~~gs~A~~~G~L~~-GD~Il~INg~~v~~~s~~e~~~~i~~~-~~~v~l~v~r~  108 (117)
T d1ujda_          56 ILPGGSAEQTGKLME-GMQVLEWNGIPLTSKTYEEVQSIISQQ-SGEAEICVRLD  108 (117)
T ss_dssp             ECTTCHHHHHSSCCT-TCEEEEETTEECTTCCHHHHHHHHSCC-SSCEEEEEESS
T ss_pred             ECCCCHHHHcCCCCC-CCEEEEECCEECCCCcHHHHHHHHHcC-CCeEEEEEEEC
Confidence            46899999999 999 9999999999999874 2344555543 35689999875

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=2.5e-08  Score=64.43  Aligned_cols=52  Identities=17%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      +.+++||++++|++ ||+|++|||+++.++. +...+++.. .+..+.|+|.|..
T Consensus        36 v~~g~~a~~~~L~~-GD~Il~INg~~v~~~t~~eav~li~~-~~~~v~L~v~R~~   88 (103)
T d1wf7a_          36 LKDGGKASQAHVRI-GDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRAS   88 (103)
T ss_dssp             CCTTCHHHHTTCCT-TCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCS
T ss_pred             cCCCChHHHCCCCC-CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            46899999999999 9999999999998874 234455655 3578999998854

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-08  Score=67.92  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=42.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|||||+++| |++ ||+|++|||+.+.++.+ ...++....+..+.+.+.|.
T Consensus        55 v~~gg~A~~~g~L~~-GD~Il~INg~~v~~~~~-~~~~l~~~~~~~v~l~v~r~  106 (124)
T d1wh1a_          55 IDPNSIAAKDGRIRE-GDRIIQINGIEVQNREE-AVALLTSEENKNFSLLIARP  106 (124)
T ss_dssp             ECSSSHHHHTCCCCT-TCEEEEESSCBCCSHHH-HHHHHTCSSCCSCCEEEEEC
T ss_pred             ECCCChhhhhcccCC-CCEEEEECCEECCCHHH-HHHHHhhCCCCcEEEEEEeC
Confidence            46899999998 999 99999999999999854 55666655567788888874

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.3e-08  Score=61.44  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=39.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.++|||+++| |++ ||+|++|||+++.++. +...+++... +..+.|+|.
T Consensus        37 v~~~g~A~~~g~l~~-GD~Il~INg~~v~~~~~~~v~~~l~~~-~~~v~L~Vl   87 (88)
T d2fnea1          37 VFAKGAASEDGRLKR-GDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVL   87 (88)
T ss_dssp             ECTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEE
T ss_pred             EcCCChHHHhCCCcC-CcEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEE
Confidence            46899999998 999 9999999999999875 3455666654 456777764

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=5.3e-08  Score=62.74  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=40.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+||||+++| |++ ||+|++|||..+.+.. +....++.. .+..+.|.+.|.
T Consensus        40 v~~gs~A~~~G~l~~-GD~Il~INg~~v~~~~~~ev~~~l~~-~~~~v~L~v~~~   92 (102)
T d1tp5a1          40 ILAGGPADLSGELRK-GDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYK   92 (102)
T ss_dssp             ECTTSHHHHHSCCCT-TEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEEC
T ss_pred             ecCCchHHHcCCCcc-cCEEEEECCeEcCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            46899999999 999 9999999999999874 234455654 357788888774

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-08  Score=66.19  Aligned_cols=52  Identities=17%  Similarity=0.332  Sum_probs=41.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.|+|||+++| |++ ||+|++|||+.+.++. +....++... +..+.|+|.|..
T Consensus        50 I~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~~~~ev~~ll~~~-~~~v~l~V~r~~  103 (114)
T d1uewa_          50 IIDGSPADRCAKLKV-GDRILAVNGQSIINMPHADIVKLIKDA-GLSVTLRIIPQE  103 (114)
T ss_dssp             ECTTCTTGGGSSCCT-TCBEEEETTBCTTTSCHHHHHHHHHHT-TTEEEEEECCCS
T ss_pred             ECCCCHHHhhccCCc-CcEEeEeCCcccCCCcHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            46899999998 999 9999999999999874 2355666653 467899998753

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.7e-08  Score=66.07  Aligned_cols=51  Identities=24%  Similarity=0.264  Sum_probs=40.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++||++ ||+|++|||+.+.++. +...+++...  ..+.++|.+.+
T Consensus        53 V~~g~~A~~~gL~~-GD~Il~INg~~v~~~s~~evv~~lr~~--~~v~l~v~~~~  104 (128)
T d1uf1a_          53 VDPGSEAEGSGLKV-GDQILEVNGRSFLNILHDEAVRLLKSS--RHLILTVKDVG  104 (128)
T ss_dssp             ECTTCHHHHHTCCT-TCEEEEETTEECSSCCHHHHHHHHTTC--SEEEEEEECCS
T ss_pred             ECCCChHHhcCCCC-CCEEEEECCEECCCCCHHHHHHHHhcC--CcEEEEEEECC
Confidence            46899999999999 9999999999999874 2344556543  47888887754

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=2.2e-08  Score=63.85  Aligned_cols=51  Identities=18%  Similarity=0.217  Sum_probs=39.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC---CCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG---IDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~---~~~~v~l~v~r   52 (163)
                      |.|||||+++| |++ ||+|++|||+.+.++. +....++...   .+.++.+++.|
T Consensus        41 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          41 VIPGGDCYKDGRLKP-GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             ECTTSHHHHHCSCCT-TCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             EeCCCccccCCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            46899999999 999 9999999999999764 3345566543   34567777654

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.7e-08  Score=64.31  Aligned_cols=52  Identities=17%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCC-CCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI-DKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~-~~~v~l~v~r~   53 (163)
                      |.++|||+++| |++ ||+|++|||+.+..+. +....++...+ +..+.|+|.|.
T Consensus        51 v~~gg~A~~~g~L~~-GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~  105 (123)
T d1ueqa_          51 VIPDGPAAQDGKMET-GDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             ECTTSHHHHTSCCCT-TCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             ECCCCHHHHcCCCee-CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcC
Confidence            46899999999 999 9999999999999873 23456676544 57899999984

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.5e-08  Score=63.83  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++| |++ ||+|++|||+.+..+. +....++... +..+.|+|.|..
T Consensus        43 v~~gg~A~~~G~L~~-GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~r~~   96 (110)
T d1um1a_          43 LLPGSPAAADGRLSL-GDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSD   96 (110)
T ss_dssp             ECTTSHHHHHSCCCT-TCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             ECCCCHHHHcCCCcc-CCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            46899999999 999 9999999999998763 2345666654 467899998753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.54  E-value=2.5e-08  Score=63.10  Aligned_cols=52  Identities=13%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC--CCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG--IDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~--~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+++.+.. +...+++...  ....+.|+|.|.
T Consensus        36 I~~gg~A~~~G~L~~-GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          36 IMKGGAVAADGRIEP-GDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             EBTTSHHHHHCCCCT-TCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             ECCCCcHHHcCCCCC-ccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            46899999999 999 9999999999999764 2334555432  234688988773

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.1e-08  Score=63.07  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHh-CCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKN-GIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~-~~~~~v~l~v~r   52 (163)
                      |.++|||+++| |++ ||+|++|||+++.+.. +....++.. ..+..+.|.|.|
T Consensus        54 v~~gg~A~~~g~L~~-GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          54 VKKGSLADVVGHLRA-GDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             ECTTSHHHHTSCCCT-TCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             ECCCCchhhcCCCCc-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            46899999999 999 9999999999998763 234456654 344678888876

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.3e-08  Score=63.28  Aligned_cols=52  Identities=17%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++| |++ ||+|++|||+.+.++. +....++... ...+.|+|.|..
T Consensus        43 v~~gg~A~~~g~L~~-GD~Il~INg~~v~~~s~~ev~~~l~~~-~~~v~l~v~R~~   96 (103)
T d1wfva_          43 LAEDGPAIRNGRMRV-GDQIIEINGESTRDMTHARAIELIKSG-GRRVRLLLKRGT   96 (103)
T ss_dssp             BCTTSHHHHHCSSCT-TCEEEEETTEECSSCCHHHHHHHHHHH-CSEECEEEECTT
T ss_pred             EcCCChHHhcCCCCC-CCEEEEECCEECCCCcHHHHHHHHHcC-CCEEEEEEEECC
Confidence            46899999999 999 9999999999999874 2344566543 467999998853

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.6e-08  Score=66.19  Aligned_cols=52  Identities=8%  Similarity=0.098  Sum_probs=42.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+||||+++| |++ ||+|++|||+.+..+. +....++...++..+.|+|.|.
T Consensus        64 v~~gg~A~~~G~L~~-GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~  117 (130)
T d1i16a_          64 IFKGAASEQSETVQP-GDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             ECSSCCCSSSCCCCT-TCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             ECCCChHHhcCCccc-CceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcC
Confidence            46899999999 999 9999999999998764 2344666666667899999874

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.3e-08  Score=62.27  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=37.7

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.++|||+++||++ ||+|++|||+++.++.. ....++....  .+.+++.+
T Consensus        41 V~~gs~A~~~gL~~-GD~Il~VNg~~v~~~~~~~v~~~lk~~~--~~~l~v~~   90 (101)
T d1x5na1          41 VKPGSLSAEVGLEI-GDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTISIVA   90 (101)
T ss_dssp             ECTTSTTTTTTCCT-TCEEEEETTEETTSCCTTHHHHHHHHCS--SEEEEECS
T ss_pred             ECCCChHHhCCCCc-ccEEEEECCEECCCCCHHHHHHHHhCCC--CEEEEEEE
Confidence            46899999999999 99999999999988742 3445665543  46666655

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-08  Score=67.04  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=40.6

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+.+.++. +....++.. .+..+.|+|.|.
T Consensus        51 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~t~~ea~~~lk~-~~~~v~L~V~r~  103 (111)
T d1ujua_          51 VSPTGAAGRDGRLRV-GLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDG  103 (111)
T ss_dssp             ECTTSHHHHHSSCCT-TCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCC
T ss_pred             ECCCChHHHcCCCcc-ceeeeeeCCcccCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            46899999999 999 9999999999999874 334455554 346788888874

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3e-08  Score=63.84  Aligned_cols=51  Identities=29%  Similarity=0.393  Sum_probs=38.4

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK   54 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~   54 (163)
                      |.++|||+++||++ ||+|++|||+.+.++. +....++...  ..+.++|.|.+
T Consensus        42 v~~gg~A~~~gL~~-GD~Il~ING~~v~~~~~~~v~~ll~~~--~~~~l~V~~~~   93 (101)
T d1ueza_          42 VEPGSLAEKEGLRV-GDQILRVNDKSLARVTHAEAVKALKGS--KKLVLSVYSAG   93 (101)
T ss_dssp             ECTTSHHHHHTCCS-SCCEEEETTEECSSCCHHHHHHHSSSS--SSCCEEECCCC
T ss_pred             ECCCChHHhcCCCC-CcEEEEECCEECCCCCHHHHHHHHhcC--CCEEEEEEECC
Confidence            46899999999999 9999999999999884 2234444433  34667777643

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=6.3e-08  Score=62.52  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=40.2

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.+||||+ ++|++ ||+|++|||+++.++. +....++... +..+.|+|.|.
T Consensus        46 v~~gs~A~-~~L~~-GD~Il~INg~~v~~~~~~ev~~ll~~~-~~~v~l~V~R~   96 (104)
T d2csja1          46 VLPGGPAD-GLLQE-NDRVVMVNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRP   96 (104)
T ss_dssp             ECTTSSHH-HHBCT-TCEEEEESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred             ECCCChhh-cCCCC-CCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            46899997 78999 9999999999999874 3355667664 46799999874

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.4e-08  Score=62.78  Aligned_cols=51  Identities=20%  Similarity=0.468  Sum_probs=39.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHh-CCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKN-GIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~-~~~~~v~l~v~r   52 (163)
                      +.++|||+++| |++ ||+|++|||+++.++. +....++.. .....+.|++..
T Consensus        45 i~~~s~A~~~G~l~~-GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v~~   98 (99)
T d1x5ra1          45 IEPDSPAERCGLLQV-GDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVEF   98 (99)
T ss_dssp             ECTTSHHHHTSSCCT-TCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             ECCCChHHHcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEc
Confidence            36899999999 999 9999999999999875 334566653 344567777653

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.5e-07  Score=60.66  Aligned_cols=50  Identities=20%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|+|||+++ |++ ||+|++|||+.+.+.. +...+++... +..+.|.|.|.
T Consensus        50 V~~gs~A~~~-L~~-GD~Il~VNg~~v~~~t~~eav~~l~~~-~~~v~L~V~R~  100 (103)
T d2h3la1          50 VQPEGPASKL-LQP-GDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVRE  100 (103)
T ss_dssp             ECTTSTTTTT-CCT-TCEEEEETTEECSSCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred             eCCCChHHhc-cCC-CCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEE
Confidence            4689999987 999 9999999999999874 2344566654 45799999873

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.3e-08  Score=62.51  Aligned_cols=51  Identities=14%  Similarity=0.200  Sum_probs=37.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r   52 (163)
                      |.+||||+++| |++ ||+|++|||+.+.++. +....++....+....+.+.|
T Consensus        42 v~~gs~A~~~g~L~~-GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r   94 (107)
T d1x6da1          42 VFPNGLASQEGTIQK-GNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTR   94 (107)
T ss_dssp             ECSSSHHHHHTSSCT-TCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEE
T ss_pred             ECCCCHHHHcCCCCc-CCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEEC
Confidence            46899999998 999 9999999999999874 234466666554433333333

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.3e-07  Score=62.33  Aligned_cols=51  Identities=20%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+++.++. +....++.. ....+.|+|.+.
T Consensus        49 I~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~v~~~l~~-~~~~v~l~v~~~  101 (117)
T d1v62a_          49 IKPASVVDRSGALHP-GDHILSIDGTSMEHCSLLEATKLLAS-ISEKVRLEILPV  101 (117)
T ss_dssp             CCTTSHHHHHTCCCT-TCBEEEETTEETTSCCHHHHHHHHHS-CSSEEEEEECCB
T ss_pred             ECCCCHHHHcCCCCh-hheeeeECCEecCCCCHHHHHHHHHc-CCCcEEEEEEEC
Confidence            57899999998 999 9999999999998764 334556654 456788888764

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=1.3e-07  Score=60.68  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=38.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVY   51 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~   51 (163)
                      |.+||||+++| |++ ||+|++|||+.+..+. +....++.... .++.|+|.
T Consensus        48 V~~gs~A~~~g~l~~-GD~Il~VNg~~v~~~~~~~~~~ll~~~~-~~v~L~v~   98 (100)
T d1va8a1          48 IVKGGAAEKSGLLHE-GDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLI   98 (100)
T ss_dssp             ECTTSHHHHHTCCCT-TCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEE
T ss_pred             ECCCChhhhhcccCc-cCEEEEECCEEEcCCCHHHHHHHHHcCC-CeEEEEEE
Confidence            46899999999 999 9999999999999875 33456666544 45777664

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.1e-07  Score=60.16  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=39.3

Q ss_pred             CCCCChhhhc--CCccCCeEEEEECCEecCCCh-HHHHHHHHh---CCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKA--GLEAFFDFIVAIDNIRLDQDN-DTLKELLKN---GIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~A--GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~---~~~~~v~l~v~r~   53 (163)
                      |.++|||++|  ||++ ||+|++|||+++.+.. +....++..   .....+.+++.++
T Consensus        41 v~~g~~A~~~~g~L~~-GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          41 VAPGTPADLCVPRLNE-GDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN   98 (106)
T ss_dssp             ECSSSTTTSSSSCCCT-TCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             EcCCCcchhccCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence            4689999987  8999 9999999999999874 334455643   3334678887764

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.8e-07  Score=61.73  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=40.9

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHh---CCCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKN---GIDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~---~~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+++.+.. +....++..   ..+..+.|++.|.
T Consensus        50 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          50 VYEGGAAERHGGVVK-GDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             CCTTSHHHHHCSSCT-TCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             ECCCChHHhcCCCCC-CCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeC
Confidence            57899999999 999 9999999999999864 233455543   3456789998874

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.7e-07  Score=61.16  Aligned_cols=51  Identities=20%  Similarity=0.451  Sum_probs=38.4

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCC-CCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGI-DKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~-~~~v~l~v~r   52 (163)
                      |.|+|||+++| |++ ||+|++|||+++..+. +....++...+ ...+.+.+.+
T Consensus        52 I~~gg~A~~~G~L~~-GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~~  105 (122)
T d1v5qa_          52 IEADSPAERCGVLQI-GDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF  105 (122)
T ss_dssp             ECTTSHHHHSCCCCT-TCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             ECCCCHHHHhCCCCc-CCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEec
Confidence            46899999999 899 9999999999999864 23456665433 3456666554

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.9e-07  Score=62.41  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=40.2

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC------CCCeEEEEEEEC
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG------IDKELKMAVYSS   53 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~------~~~~v~l~v~r~   53 (163)
                      |.|+|||+++| |++ ||+|++|||+.+.++. +....++...      ...++.|+|.|.
T Consensus        62 v~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_          62 IIHGGAAFKDGRLRM-NDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR  121 (127)
T ss_dssp             CCSSSSTHHHHTSCS-CCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             ECCCCchhccCCCCC-CCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeC
Confidence            57899999999 999 9999999999998764 2334455421      246789999884

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.4e-07  Score=58.89  Aligned_cols=51  Identities=12%  Similarity=0.258  Sum_probs=37.5

Q ss_pred             CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhC----CCCeEEEEEEE
Q psy18011          1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNG----IDKELKMAVYS   52 (163)
Q Consensus         1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~----~~~~v~l~v~r   52 (163)
                      |.|+|||+++| |++ ||+|++|||+++..+. +....++...    ....+.+.+.+
T Consensus        39 i~~gg~A~~~G~L~~-GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~   95 (103)
T d1ufxa_          39 IQRGGSAHNCGQLKV-GHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE   95 (103)
T ss_dssp             ECTTSHHHHHCSSCT-TCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECC
T ss_pred             EcCCcchhhcCCCCC-CCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeC
Confidence            46899999999 999 9999999999999875 3344555432    22456665544

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=4.2e-06  Score=52.87  Aligned_cols=49  Identities=20%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             CChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhC-CCCeEEEEEEEC
Q psy18011          4 NSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNG-IDKELKMAVYSS   53 (163)
Q Consensus         4 ~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~-~~~~v~l~v~r~   53 (163)
                      .+++..+||++ ||+|++|||+.+..+. +...+++... .+..+.|+|.|.
T Consensus        40 ~~~~~~~~L~~-GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          40 LDIQGCPGLCE-GDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCGGGSTTCCS-SCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cCcccccCCCC-CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            45677789999 9999999999999874 3345667654 457899999885

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.40  E-value=6e-05  Score=47.93  Aligned_cols=59  Identities=10%  Similarity=0.045  Sum_probs=43.6

Q ss_pred             cccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeeccccc
Q psy18011         87 ANENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSF  152 (163)
Q Consensus        87 ~~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~~  152 (163)
                      ++|.   |+++|+      .+|.++|+.+ +|+++.|.|.|  ++...++...|.  ..+.++||+.+...+.
T Consensus        22 ~GD~---I~~ing~~v~~~~~l~~~i~~~~~G~~v~l~v~R--~~~~~~l~~~p~--~~~~~~iGi~~~~~~~   87 (103)
T d2hgaa1          22 PGLV---IESINGMPTSNLTTYSAALKTISVGEVINITTDQ--GTFHLKTGRNPN--NSSRAYMGIRTSNHLR   87 (103)
T ss_dssp             TTCE---EEEETTEECSSHHHHHHHHTTCCTTCEEEEEETT--EEEEEECCBCSS--SCCSCBCCEEEECCCC
T ss_pred             CCCE---EEEECCEEcCCHHHHHHHHhhCCCCCEEEEEEEE--CCEEEEEEeccC--CCCceEEEEEecceec
Confidence            3566   999998      8899999875 69999999987  555555555553  3457899998865443

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0046  Score=38.28  Aligned_cols=40  Identities=18%  Similarity=0.355  Sum_probs=33.8

Q ss_pred             ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011         88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS  134 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~  134 (163)
                      +|.   |+++|+      ++|.++++  +|+++.++|.|  +++.++++++|.
T Consensus        52 GDi---I~~ing~~V~s~~dl~~~l~--~g~~v~l~v~R--~g~~~~~~v~pe   97 (100)
T d1lcya1          52 GDV---ILAIGEQMVQNAEDVYEAVR--TQSQLAVQIRR--GRETLTLYVTPE   97 (100)
T ss_dssp             TCE---EEEETTEECCSHHHHHHHHT--TCSSEEEEEEE--TTEEEEEEECCE
T ss_pred             CcE---EEEECCEEcCCHHHHHHHhc--CCCEEEEEEEE--CCEEEEEEEEee
Confidence            455   999998      78888885  68999999999  778899999985

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.06  E-value=0.0077  Score=36.84  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=33.3

Q ss_pred             cccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         87 ANENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        87 ~~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      ++|.   |++||+      .++.++++..+|+++.|++.|.+ +..+++.|+
T Consensus        41 ~GD~---I~~IdG~~v~~~~~~~~~l~g~~G~~V~L~i~R~g-~~~r~~~V~   88 (91)
T d1k32a1          41 TGYL---IEDIDGETVGAGSNIYRVLSEKAGTSARIRLSGKG-GDKRDLMID   88 (91)
T ss_dssp             TTCE---EEEETTEECBTTBCHHHHHHTTTTSEEEEEEECSS-SCEEEEEEE
T ss_pred             CCCE---EEEECCEeecCcceeEEEEecCCCCEEEEEEEeCC-CCEEEEEEE
Confidence            3566   999998      77899999999999999999843 455666654

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.56  E-value=0.027  Score=33.78  Aligned_cols=39  Identities=18%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             EeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         94 ILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        94 I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      |+++|+      ++|...+.. .+|..+.|+|.|. ++..++++++.
T Consensus        40 I~~ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~-~g~~~~v~vtL   85 (88)
T d2z9ia1          40 VTKVDDRPINSADALVAAVRSKAPGATVALTFQDP-SGGSRTVQVTL   85 (88)
T ss_dssp             EEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEET-TTEEEEEEEEC
T ss_pred             EEEeCCCcCCcHHHHHHHHHhCCCCCEEEEEEEEC-CCCEEEEEEEE
Confidence            999998      778888765 4799999999983 56777888775

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=95.43  E-value=0.025  Score=34.00  Aligned_cols=40  Identities=13%  Similarity=0.226  Sum_probs=32.6

Q ss_pred             ccceEEEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011         88 NENVWHILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNIT  132 (163)
Q Consensus        88 ~~~~~~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~  132 (163)
                      +|.   |+++|+      +++.++++. .++.++.++|.|  +++.+++++.
T Consensus        40 GDi---I~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R--~g~~~~i~v~   86 (87)
T d2i6va1          40 GDM---AVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER--DGQQHDVYIQ   86 (87)
T ss_dssp             TCE---EEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEE--TTEEEEEEEE
T ss_pred             CCE---EEEECCEEeecHHHHHHHHHhhccccccEEEEEE--CCEEEEEEEE
Confidence            455   999998      788888876 479999999999  7777777764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=95.08  E-value=0.026  Score=34.26  Aligned_cols=43  Identities=21%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             cccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCC-eEEEEEEe
Q psy18011         87 ANENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQ-DVRTVNIT  132 (163)
Q Consensus        87 ~~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~-~~~~v~v~  132 (163)
                      ++|.   |++||+        +++.++++..+|.++.|++.|.+.. ..++++++
T Consensus        39 ~GD~---I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~~~~~~~~l~   90 (92)
T d1fc6a3          39 AGDV---IVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLT   90 (92)
T ss_dssp             TTCE---EEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCc---ceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCcCcEEEEEEE
Confidence            3566   999998        6777888877899999999995432 33455554

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.024  Score=34.85  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=25.8

Q ss_pred             EeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011         94 ILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITP  133 (163)
Q Consensus        94 I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p  133 (163)
                      |+++|+      .+|.+.+.. .+|+++.|+|+|  +++.+++++++
T Consensus        50 I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l   94 (99)
T d1sota1          50 IISVDNKPAISALETMDQVAEIRPGSVIPVVVMR--DDKQLTLQVTI   94 (99)
T ss_dssp             ECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC-------CCCEEEEC
T ss_pred             EEEECCEecccHHHHHHHHHcCCCCCEEEEEEEE--CCEEEEEEEEE
Confidence            999988      788888855 579999999999  45555566554

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.03  Score=34.02  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             EeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEE
Q psy18011         94 ILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNI  131 (163)
Q Consensus        94 I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v  131 (163)
                      |+++|+      .+|.+++... +|+++.|.|.|  +++.+++++
T Consensus        51 I~~i~g~~v~~~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v   93 (94)
T d1ky9a1          51 ITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR--DGKQVNVNL   93 (94)
T ss_dssp             ECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEES--SSCEEECCC
T ss_pred             EEEECCEEeCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEE
Confidence            999998      7899999764 79999999998  566666543

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.41  Score=28.80  Aligned_cols=31  Identities=13%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccC-CCeEEEEEEeC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGI-DKELKMAVYSS  121 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~  121 (163)
                      +|+   |++||+        ++.+++|++.+ +..++|.|.|.
T Consensus        51 GD~---Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          51 GDL---IVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCE---EEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             CCE---EEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            455   999998        78899999764 78999999873

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.94  Score=26.75  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      +|++||+        ++..++++++ +..+.|+|.|
T Consensus        54 ~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l~v~~   88 (90)
T d1qava_          54 AILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY   88 (90)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            3999998        7888899874 5679999976

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.13  Score=30.60  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=25.5

Q ss_pred             EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEE
Q psy18011         93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRT  128 (163)
Q Consensus        93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~  128 (163)
                      .|+++|+      ++|.+++++ ++.++.|+|.|  +++.+.
T Consensus        48 vI~~ing~~v~~~~~~~~~l~~-~~~~v~l~v~R--~~~~~~   86 (88)
T d1ky9b2          48 VIIGANQQAVKNIAELRKVLDS-KPSVLALNIQR--GDSTIY   86 (88)
T ss_dssp             EEEEETTEECSSHHHHHHHTTT-CCSCCCEEEES--SSCEEE
T ss_pred             EEEEECCEEcCCHHHHHHHHHh-CCCEEEEEEEE--CCEEEE
Confidence            3999998      788888875 66789999998  554444

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.38  E-value=1.2  Score=26.22  Aligned_cols=26  Identities=12%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      |++||+        .+..+++++ .+..+.|+|.|
T Consensus        56 Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~R   89 (91)
T d1m5za_          56 LLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISR   89 (91)
T ss_dssp             EEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEE
T ss_pred             EEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEE
Confidence            999998        677888885 57789999988

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.77  Score=26.69  Aligned_cols=26  Identities=8%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEE
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVY  119 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~  119 (163)
                      .|++||+        ++..+++++ .+..++|+|.
T Consensus        46 ~Il~INg~~v~~~t~~~~~~ll~~-~~~~v~l~v~   79 (82)
T d1r6ja_          46 NICEINGQNVIGLKDSQIADILST-SGTVVTITIM   79 (82)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEE
T ss_pred             EEEEeCCeEEeeCCHHHHHHHHHc-CCCEEEEEEE
Confidence            4999998        778889986 5677888874

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.29  Score=28.79  Aligned_cols=31  Identities=13%  Similarity=0.195  Sum_probs=24.6

Q ss_pred             cccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         87 ANENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        87 ~~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .+|.   |++||+        ++..+++++ .+..+.|+|.|.
T Consensus        45 ~GD~---Il~VNg~~v~~~s~~ev~~~i~~-~~~~v~L~V~R~   83 (85)
T d1rgwa_          45 QGDL---VVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKS   83 (85)
T ss_dssp             CCSB---EEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESC
T ss_pred             CCCE---EEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEEC
Confidence            3566   999998        778888886 467899999883

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.68  E-value=2.3  Score=25.22  Aligned_cols=30  Identities=13%  Similarity=0.273  Sum_probs=24.1

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      +|+   |++||+        ++..+++++ .+..+.|.|.|+
T Consensus        59 GD~---Il~VNg~~v~~~s~~~a~~~lk~-~~~~v~L~v~R~   96 (99)
T d1ozia_          59 GDR---VLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKG   96 (99)
T ss_dssp             TCE---EEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEECC
T ss_pred             cCE---EEEECCEEcCCCCHHHHHHHHHC-CCCeEEEEEEeC
Confidence            455   999998        677888886 567899999884

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.58  E-value=0.6  Score=28.12  Aligned_cols=30  Identities=17%  Similarity=0.392  Sum_probs=24.0

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      +|+   |++||+        ++..+++++. +..+.|+|.|+
T Consensus        60 GD~---Il~VNg~~v~~~s~~e~~~ll~~~-~~~v~L~V~r~   97 (99)
T d1p1da2          60 GDK---LLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKD   97 (99)
T ss_dssp             TCE---EEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECC
T ss_pred             CCE---EEeeCCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            455   999998        7888999875 45699999874

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.75  Score=27.22  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      +|+   |++||+        ++..+++++ .+.++.|.|.|.
T Consensus        53 GD~---Il~VNg~~v~~~~~~e~~~~lk~-~~~~v~L~v~Rp   90 (92)
T d2fe5a1          53 GDR---LLAVNNTNLQDVRHEEAVASLKN-TSDMVYLKVAKP   90 (92)
T ss_dssp             TCE---EEEETTEECTTCBHHHHHHHHHT-CCSEEEEEEECC
T ss_pred             CCE---EEEeCCeecCCCCHHHHHHHHHc-CCCEEEEEEECC
Confidence            455   999998        788889986 467899999884

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.68  Score=29.31  Aligned_cols=27  Identities=15%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      |++||+        ++.+++|++.+...+.|.|.|
T Consensus        82 Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r  116 (130)
T d1i16a_          82 ILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR  116 (130)
T ss_dssp             EEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEE
T ss_pred             eeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEc
Confidence            999998        788899998777789999987

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.7  Score=26.95  Aligned_cols=27  Identities=19%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      |++||+        +++.+++++.++..+.|.|.+
T Consensus        49 Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          49 VLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             EEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             EEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            999998        788999988888899998853

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.94  Score=26.79  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      .|++||+        ++..+++++ .+.+++|.|.|.
T Consensus        55 ~Il~VNg~~v~~~s~~ea~~~l~~-~~~~v~L~v~R~   90 (92)
T d1t2ma1          55 QLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQ   90 (92)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred             EeeeeCCeecCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            3999998        778888986 567899999983

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.62  E-value=0.81  Score=27.15  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      +|++||+        ++..+++++ .+..+.|+|.|
T Consensus        59 ~Il~VNg~~v~~~~~~~~~~ll~~-~~~~v~L~V~R   93 (94)
T d1ihja_          59 RILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQT   93 (94)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence            3999998        778889986 46779999986

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.38  E-value=0.88  Score=27.10  Aligned_cols=27  Identities=11%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEeC
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYSS  121 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~  121 (163)
                      |++||+        .+..+++++ .+.++.|+|.|.
T Consensus        54 Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~   88 (94)
T d1vb7a_          54 IVAINGQSAENMLHAEAQSKIRQ-SASPLRLQLDRS   88 (94)
T ss_dssp             EEEETTEECTTCCHHHHHHHHHT-CCSSEEEEEECC
T ss_pred             EEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            999998        677888886 567899999984

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.74  E-value=0.82  Score=28.93  Aligned_cols=29  Identities=17%  Similarity=0.310  Sum_probs=24.3

Q ss_pred             EEeeeCc--------hHHHHHHHccC-CCeEEEEEEeC
Q psy18011         93 HILDQDN--------DTLKELLKNGI-DKELKMAVYSS  121 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~  121 (163)
                      .|++||+        ++..++|++.+ |..++|.|.|+
T Consensus        73 ~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~  110 (126)
T d1wifa_          73 VLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             BEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             EEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeC
Confidence            3999998        68889999754 78999999984

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=1  Score=28.28  Aligned_cols=32  Identities=6%  Similarity=0.189  Sum_probs=25.7

Q ss_pred             cccceEEEeeeCc--------hHHHHHHHccC-CCeEEEEEEeC
Q psy18011         87 ANENVWHILDQDN--------DTLKELLKNGI-DKELKMAVYSS  121 (163)
Q Consensus        87 ~~~~~~~I~~v~~--------~~l~~~v~~~~-~~~v~l~v~r~  121 (163)
                      .+|+   |++||+        ++.+++|++.+ +..+.|.|.|.
T Consensus        65 ~GD~---Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~  105 (123)
T d1ueqa_          65 TGDV---IVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             TTCE---EEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             eCCE---EEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcC
Confidence            3455   999998        78889998765 78899999883

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=1.3  Score=25.18  Aligned_cols=29  Identities=14%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      +|.   |++||+        .+..+.+++ .+.+++|.|.|
T Consensus        39 GD~---Il~Vng~~v~~~~~~~v~~~i~~-~~~~v~L~v~R   75 (77)
T d2f5ya1          39 LDT---VLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWR   75 (77)
T ss_dssp             TCE---EEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEE
T ss_pred             CCE---EEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEE
Confidence            455   999998        667788886 56789999987

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.24  E-value=1.1  Score=26.41  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             EEeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         93 HILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      +|++||+        ++..+++++ .+..+.|+|.|
T Consensus        55 ~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~L~v~R   89 (93)
T d1rgra_          55 SILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR   89 (93)
T ss_dssp             EEEEETTEECSSSCHHHHHHHHHH-TTTEEEEEEEC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence            3999998        677888886 56789999987

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=1.1  Score=26.65  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=21.3

Q ss_pred             EeeeCc--------hHHHHHHHccCCCeEEEEEEe
Q psy18011         94 ILDQDN--------DTLKELLKNGIDKELKMAVYS  120 (163)
Q Consensus        94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r  120 (163)
                      |++||+        ++..+++++ .+..++|+|+|
T Consensus        61 Il~VNg~~v~~~t~~ea~~~lk~-~~~~v~L~V~r   94 (96)
T d2fcfa1          61 IVEVDGMDLRDASHEQAVEAIRK-AGNPVVFMVQS   94 (96)
T ss_dssp             EEEETTEECTTCCHHHHHHHHHT-CCSSEEEEEEC
T ss_pred             EEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence            999998        777888886 56779999976