Psyllid ID: psy18018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----
Protein Sequence
MSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK
Secondary Structure (PSIPRED)
cccccEEEEEEccccccccEEEcccccEEEEEEEcccccccccEEEEcccccEEEEEccccEEEcccccccccEEEEcccccEEEEEEccccEEEEEEcccEEEEEEcccccEEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccEEEEEEccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccEEEEEEccccEEEEccccccEEEccccccccccccccccEEEEEEEccccEEEccccccEEEEEEcccccEEEEEEEEEEEEEEEcccccHHcccccccEEEccccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEEccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEcccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccEEEEEccccccEEEEEEEEccEcccccEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEccccEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEcccccccccccccEccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEcccccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mshrsveinwrtrpikdpkvlkghddhvITCLqfsgksfpcesfirssspwkALFMSHRSVeinwrtrpikdpkvlkghddhvitclqfsgsrivsgsddntLKVWSATTGkcllvsgsrdatLRVWHIESGECLHVLVGHLAAVRcvqydgklvvSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSrivsgsddntlKVWSATTGKCLRTLightggvwssqmagniiisgstdrtlkgwsNAERILAIGQlidsceptQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLhrnkkthvpdlfgfqfdgvhvvSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIlvsgnadstvKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIlvsgnadstvKVWDIVsgqclqtlsgrnkhqsAVTCLQFNsrfvitssddgtvklwdvktgefstplmssfilnpfyfliysqpllcphlqfnsrfvitssddgtvklwdVKTGEFIRNLVsldsggsggvVWRIRASETKLVCavgsrngteeTKLLVLDFDVDSK
Flexible Loop (DISEMBL)
mshrsveinwrtrpikdpkvlkgHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRsveinwrtrpikdpkvlkghDDHVITCLQfsgsrivsgsddNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSrivsgsddntLKVWSATTGKCLRTLIGhtggvwssqmAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILvsgnadstvkVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRfvitssddgtvKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRnlvsldsggsggvVWRIRASETKLvcavgsrngteetkllvldfdvdsk
Low Complexity Region (SEG)
MSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNlvsldsggsggvvWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK
Disordered region (IsUnstruct)
********NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF*****
Disordered Region (DISOPRED)
*SHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD**
Disordered Region (DISEMBL)
MSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK
Disordered Region (DISPRO)
***RSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	635	2.2.26 [Sep-21-2011]
Q969H0	707	F-box/WD repeat-containin	yes	N/A	0.535	0.480	0.454	1e-109
Q8VBV4	629	F-box/WD repeat-containin	no	N/A	0.535	0.540	0.450	1e-108
Q9VZF4	1326	F-box/WD repeat-containin	yes	N/A	0.6	0.287	0.431	1e-94
Q61FW2	589	F-box/WD repeat-containin	N/A	N/A	0.6	0.646	0.286	4e-51
Q93794	587	F-box/WD repeat-containin	yes	N/A	0.6	0.649	0.297	2e-50
Q8YRI1	1526	Uncharacterized WD repeat	yes	N/A	0.867	0.361	0.287	3e-48
Q8YTC2	1258	Uncharacterized WD repeat	no	N/A	0.771	0.389	0.275	9e-46
Q00808	1356	Vegetative incompatibilit	no	N/A	0.636	0.297	0.282	2e-37
Q8YV57	1683	Uncharacterized WD repeat	no	N/A	0.8	0.301	0.258	4e-37
Q9UKB1	542	F-box/WD repeat-containin	no	N/A	0.499	0.584	0.234	1e-31

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/522 (45%), Positives = 282/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 239 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 298

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 299 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 358

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 359 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 418

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 419 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 478

Query: 415 KKLMFRI-------CL--------------FDGVHVVSG--------------------- 432
           +    R+       CL              +DG  VVSG                     
Sbjct: 479 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 538

Query: 433 -------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                              SLDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 539 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 598

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G NKHQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF  
Sbjct: 599 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-- 656

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 657 ---------------------------------------------------IRNLVTLES 665

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 666 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 707

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.
Homo sapiens (taxid: 9606)

>sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/522 (45%), Positives = 282/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 161 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 220

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 221 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQ 280

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 281 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 340

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 341 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 400

Query: 415 KKLMFRI-------CL--------------FDGVHVVSGS-------------------- 433
           +    R+       CL              +DG  VVSG+                    
Sbjct: 401 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 460

Query: 434 --------------------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                               LDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 461 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 520

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G +KHQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF  
Sbjct: 521 ADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-- 578

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 579 ---------------------------------------------------IRNLVTLES 587

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 588 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 629

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Mus musculus (taxid: 10090)

>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1

 Score =  347 bits (891), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/470 (43%), Positives = 268/470 (57%), Gaps = 89/470 (18%)

Query: 248  WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
            WS+ ER+LA+ +LID C+P+Q+RHMM++IEPQFQRDFISLLPRELAL+VL++L+P+DLLR
Sbjct: 855  WSHVERLLALDRLIDHCDPSQVRHMMKVIEPQFQRDFISLLPRELALFVLSYLEPKDLLR 914

Query: 308  AAQTCRS----------WR-------FLAED----------------------------- 321
            AAQTCRS          W+        LAE                              
Sbjct: 915  AAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRPKRGRDGNMPPIASPWKAAYMRQHI 974

Query: 322  -NLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
              + WR + +    + +    HV  +   QF G  +VSGS D +++VW A +G    TL+
Sbjct: 975  IEMNWRSRPVRKPKVLKGHDDHV--ITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLV 1032

Query: 381  GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGT-------KKLMFRICLFDGVHVVSGS 433
            GH       ++  NI++SG+ D T+KVWD+ SG             R     G  VVSGS
Sbjct: 1033 GHTGGVWSSQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVVSGS 1092

Query: 434  LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS 493
             D ++RVW+ E G+  H L+GH +    ++    ++VSG  D  VK+W     +CL TL 
Sbjct: 1093 RDATLRVWDIEQGSCLHVLVGHLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQECLHTLQ 1152

Query: 494  GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS--- 550
            G   H + V  LQF+   V++ S D ++++WDV+TG     LM    L     L  +   
Sbjct: 1153 G---HTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSGMELRQNILV 1209

Query: 551  -------------------QPLLCPH--------LQFNSRFVITSSDDGTVKLWDVKTGE 583
                               Q L  P+        LQFNSRFV+TSSDDGTVKLWDVKTG+
Sbjct: 1210 SGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKLWDVKTGD 1269

Query: 584  FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD 633
            FIRNLV+LDSGGSGGVVWRIRA++TKL+CAVGSRNGTEETKL+VLDFDV+
Sbjct: 1270 FIRNLVALDSGGSGGVVWRIRANDTKLICAVGSRNGTEETKLMVLDFDVE 1319

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins (By similarity). Involved in the degradation of cyclin E and dm/Myc. Required for endocycles, but not mitosis in follicle cell epithelium.

Drosophila melanogaster (taxid: 7227)

>sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1

 Score =  203 bits (516), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 233/510 (45%), Gaps = 129/510 (25%)

Query: 245 LKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304
            K  + AE++ A  +L+     + IR M  +IEP FQ+DF+S LP E+ + +L  L   D
Sbjct: 86  FKDLTVAEQMEAFARLVQESNMSNIRQMRAIIEPHFQKDFLSCLPVEIGIKILQNLNSTD 145

Query: 305 LLRAAQTCRSWRFLAEDNLLWR-------EKCLEAATLHRN--------KKTHVPDLFG- 348
           L++ AQ  ++W+ L+E   +W+       +  LE +   R            ++PD    
Sbjct: 146 LMKVAQVSKNWKMLSEVEKVWKSLEDRGFKNLLEPSDRTRGAWEATAVIPGVNIPDHVNQ 205

Query: 349 -----------FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-------HQSLTSGME 390
                       ++  ++  S      +R  + E       +MG        + + + M+
Sbjct: 206 CEINIHRLVKLLKYGPIYERSADKSRYLRGEKIEKNWHSRPIMGSAILRGHEEHVITCMQ 265

Query: 391 LRNNILVSGNADSTVKVWDIVSGTKKLMFR------------ICLFDGVHVVSGSLDTSI 438
           + N++LV+G+ D+T+KVW I  G  K                 C   G ++VSGS D ++
Sbjct: 266 IHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQC---GRYIVSGSTDRTV 322

Query: 439 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
           +VW AE G L HTL GH S    M + N  LV+G+ D T++VWDI +G  ++TL G   H
Sbjct: 323 KVWRAEDGFLLHTLQGHTSTVRCMAMANTTLVTGSRDCTLRVWDIETGLHVRTLQG---H 379

Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY--------- 549
           Q+AV C+QF+   V++   D TVK+WD  +G+    L+     N  Y L+Y         
Sbjct: 380 QAAVRCVQFDGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHS--NRVYSLLYESERSIVCS 437

Query: 550 ------------SQP-------LLCPH------LQFNSRFVITSSDDGTVKLWDVKTGE- 583
                       S+P        L  H      +Q     +++ + D  V++WD+  G  
Sbjct: 438 GSLDTSIRVWDFSRPEGQELIAFLSGHTSLTSGMQLRGNILVSCNADSHVRVWDIYEGTC 497

Query: 584 ----------------------------------------FIRNLVSLDSGGSGGVVWRI 603
                                                    IR+LVSL+SGG+GG +WR+
Sbjct: 498 IHILSGHRSAITSLQWFGRGLVATSSDDGSVKLWDIERGVLIRDLVSLNSGGNGGCIWRL 557

Query: 604 RASETKLVCAVGSRNGTEETKLLVLDFDVD 633
            +++T L CA+GSRN TEETK+++LDFD +
Sbjct: 558 CSTQTMLACAIGSRNNTEETKVILLDFDAN 587

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 234/508 (46%), Gaps = 127/508 (25%)

Query: 245 LKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304
            K  S+AE++ A  +L+     T IR +  +IEP FQRDF+S LP EL + +L  L   D
Sbjct: 84  FKDLSSAEQMDAFTRLLQESNMTNIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYD 143

Query: 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV---------------PD---- 345
           LL+ AQ  ++W+ ++E + +W+   +E    H +    V               PD    
Sbjct: 144 LLKVAQVSKNWKLISEIDKIWKSLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 203

Query: 346 ------------LFGFQFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQS-LTSGME 390
                        FG  F+     S  L  D   + W A        L GH+  + + M+
Sbjct: 204 CDLNVHRFLKLQKFGDIFERAADKSRYLRADKIEKNWNANPIMGSAVLRGHEDHVITCMQ 263

Query: 391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD-----------GVHVVSGSLDTSIR 439
           + +++LV+G+ D+T+KVW I  G  ++M+ +               G ++VSGS D +++
Sbjct: 264 IHDDVLVTGSDDNTLKVWCIDKG--EVMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTVK 321

Query: 440 VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499
           VW    G+L HTL GH S    M +  +ILV+G+ D+T++VWD+ SG+ L TL G   H 
Sbjct: 322 VWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHG---HH 378

Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI----------- 548
           +AV C+QF+   V++   D TVK+W+  TG     L      N  Y L+           
Sbjct: 379 AAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHN--NRVYSLLFESERSIVCSG 436

Query: 549 ----------YSQP-------LLCPH------LQFNSRFVITSSDDGTVKLWDVKTG--- 582
                     +++P       LL  H      +Q     +++ + D  V++WD+  G   
Sbjct: 437 SLDTSIRVWDFTRPEGQECVALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDIHEGTCV 496

Query: 583 --------------------------------------EFIRNLVSLDSGGSGGVVWRIR 604
                                                   IR+LV+LDSGG+GG +WR+ 
Sbjct: 497 HMLSGHRSAITSLQWFGRNMVATSSDDGTVKLWDIERGALIRDLVTLDSGGNGGCIWRLC 556

Query: 605 ASETKLVCAVGSRNGTEETKLLVLDFDV 632
           ++ T L CAVGSRN TEETK+++LDFD 
Sbjct: 557 STSTMLACAVGSRNNTEETKVILLDFDA 584

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  193 bits (491), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 198/689 (28%), Positives = 297/689 (43%), Gaps = 138/689 (20%)

Query: 20   VLKGHD--DHVITCLQFSGKSFPCESFIRSS------------------SPWKALFMSHR 59
            VL+G D    VI    F+  S  C +F  ++                  SP   LF +  
Sbjct: 824  VLEGRDLSHTVIIGADFTNTSLRCVNFTEANLAYSVFTKILGSVLTVAFSPDGKLFATGD 883

Query: 60   SVEI--NWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL- 114
            S  I   W     K+    KGH+  V   + FS  G  + SGSDD T+++W  ++G+CL 
Sbjct: 884  SGGIVRFWEAATGKELLTCKGHNSWV-NSVGFSQDGKMLASGSDDQTVRLWDISSGQCLK 942

Query: 115  --------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DG 152
                                L SGS D T+R+W I SGECL++  GH   V  V +  DG
Sbjct: 943  TFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDG 1002

Query: 153  KLVVSGAYDYMVKIWNPDTEECL-----HAELQETEVELSHGYALRSRIVSGSDDNTLKV 207
             ++ +G+ D  V++W+  + +C      H     + V  S G  L     SGSDD T+++
Sbjct: 1003 SMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRL 1058

Query: 208  WSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDR--------------TLKGWSNA 251
            W  ++G CL TL GHT  V S   +  G ++ SG  D+              TL+G+++ 
Sbjct: 1059 WDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSW 1118

Query: 252  ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA-- 309
             R L       +        +++L +   ++   +L      +  + F  P+    A+  
Sbjct: 1119 VRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAF-SPDGATLASGS 1177

Query: 310  --QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367
              QT R W   +        KCL     H +    V     F  DG  + SGS D ++R+
Sbjct: 1178 GDQTVRLWDISS-------SKCLYILQGHTSWVNSVV----FNPDGSTLASGSSDQTVRL 1226

Query: 368  WEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR----- 420
            WE  S     T  GH S  + +      ++L SG++D TV++WDI S      F+     
Sbjct: 1227 WEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNW 1286

Query: 421  --ICLF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNA 474
                 F  DG  + SGS D ++R+WE  S    HT  GH S  S +    +  +L SG+ 
Sbjct: 1287 VNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSD 1346

Query: 475  DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG--TVKLWDVKTGEFS 532
            D TV++W I SG+CL T  G   H + V  + F+    I +S  G  TV+LW + +G+  
Sbjct: 1347 DQTVRLWSISSGECLYTFLG---HTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCL 1403

Query: 533  TPL------MSSFILNPFYFLIYS---------------QPLLCPHLQFNS--------- 562
              L      + S + +P   L+ S               + L   H   NS         
Sbjct: 1404 YTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSD 1463

Query: 563  -RFVITSSDDGTVKLWDVKTGEFIRNLVS 590
               + + SDD T+KLWDVKTGE I+ L S
Sbjct: 1464 GLILASGSDDETIKLWDVKTGECIKTLKS 1492

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  185 bits (470), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 163/592 (27%), Positives = 260/592 (43%), Gaps = 102/592 (17%)

Query: 65   WRTRPIKDPKVLKGHDDHV-ITCLQFSGSRIVSGSDDNTLKVWSATTGKCL--------- 114
            W  +  K   + +GH + V        G  + S   D  +K+WS   G C+         
Sbjct: 669  WEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHE 728

Query: 115  ------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY 160
                        L S S D T+++W I+ G CL  L GH   VRCV +  DG  + S A 
Sbjct: 729  VFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAA 788

Query: 161  DYMVKIWNPDTEECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTL 219
            D+ +K+W+    +CL      T    S  ++   + + SGS D T+K+W+  TG+CL+T 
Sbjct: 789  DHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTY 848

Query: 220  IGHTGGVWSSQMAGN--IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277
            IGHT  V+S   + +  I++SGS DRT+K W     I         C  T   H  ++  
Sbjct: 849  IGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHI---------CIKTLHGHTNEVCS 899

Query: 278  PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW----------RFLAEDNLLW-- 325
              F  D  +L    L   V  +       R  Q  ++W           F  +  +L   
Sbjct: 900  VAFSPDGQTLACVSLDQSVRLW-----NCRTGQCLKAWYGNTDWALPVAFSPDRQILASG 954

Query: 326  -REKCLEAATLHRNK-----KTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRH 377
              +K ++       K     + H   ++G  F  D   + S S D+S+R+W   +G    
Sbjct: 955  SNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQ 1014

Query: 378  TLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSG---------TKKLMFRICLFDG 426
             L+ H      +    +  I+ +G+AD TVK+W+I +G         + K++      DG
Sbjct: 1015 ILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDG 1074

Query: 427  VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIV 484
              + S S D S+R+W+  +G     L GH +         N  I+ + + D TVK+WD  
Sbjct: 1075 QLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQ 1134

Query: 485  SGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEF------STPLM 536
             G+CL+TL+G   H + V  + F  + + + ++S D TV++WDV TG+        T L+
Sbjct: 1135 QGKCLKTLTG---HTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLV 1191

Query: 537  SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
            SS   +P                 +   V + S D TV++W+VKTGE ++ L
Sbjct: 1192 SSVAFSP-----------------DGEVVASGSQDQTVRIWNVKTGECLQIL 1226

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 210/500 (42%), Gaps = 96/500 (19%)

Query: 122  ATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL 179
            +T+ V   E   C   L GH ++V  V +  DG+ V SG+ D  +KIW+        A  
Sbjct: 821  STISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDT-------ASG 873

Query: 180  QETEVELSHGYAL--------RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
              T+    HG ++        R R+ SGSDD T+K+W A +G C +TL GH G V S   
Sbjct: 874  TGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAF 933

Query: 232  A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
            +  G  + SGS D T+K W  A           +C  T   H   ++   F  D   +  
Sbjct: 934  SPDGQRVASGSDDHTIKIWDAAS---------GTCTQTLEGHGSSVLSVAFSPDGQRVAS 984

Query: 290  RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
                                +T + W   +         C +    H      V     F
Sbjct: 985  GS----------------GDKTIKIWDTASG-------TCTQTLEGHGGSVWSV----AF 1017

Query: 350  QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKV 407
              DG  V SGS D +I++W+  SG    TL GH      +    +   + SG+ D T+K+
Sbjct: 1018 SPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKI 1077

Query: 408  WDIVSGT--------KKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
            WD VSGT           ++ +    DG  V SGS+D +I++W+A SG    TL GH   
Sbjct: 1078 WDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGW 1137

Query: 459  TSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT 514
               +    +   + SG+ D T+K+WD  SG C QTL G   H   V  + F  + + V +
Sbjct: 1138 VHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEG---HGGWVQSVAFSPDGQRVAS 1194

Query: 515  SSDDGTVKLWDVKTGEFSTPL------MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS 568
             S D T+K+WD  +G  +  L      + S   +P                 + + V + 
Sbjct: 1195 GSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSP-----------------DGQRVASG 1237

Query: 569  SDDGTVKLWDVKTGEFIRNL 588
            S D T+K+WD  +G   + L
Sbjct: 1238 SSDNTIKIWDTASGTCTQTL 1257

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  156 bits (395), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 161/622 (25%), Positives = 273/622 (43%), Gaps = 114/622 (18%)

Query: 21   LKGHDDHVIT-CLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGH 79
            L+GH D VI+  +   G++    S  ++   W               +R  +  + L GH
Sbjct: 1068 LEGHKDGVISISISRDGQTIASGSLDKTIKLW---------------SRDGRLFRTLNGH 1112

Query: 80   DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL---------------------LV 116
            +D V + + FS  G  I SG  D T+K+W  + G  L                     L 
Sbjct: 1113 EDAVYS-VSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLA 1171

Query: 117  SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEEC 174
            S S D ++++W   SG+ L  L GH A V  V++  DG+ + +G+ D  VK+W+    + 
Sbjct: 1172 SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKL 1231

Query: 175  LHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA- 232
            L       +   S  ++   + + S S D T+K+W    GK ++TL GH   VW    + 
Sbjct: 1232 LKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSS 1291

Query: 233  -GNIIISGSTDRTLKGWS-----------NAERILAIGQLIDS--CEPTQIRHMMQLIEP 278
             G  I S S D T+K W+           ++  + A+  L DS       + + ++L   
Sbjct: 1292 DGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRL--- 1348

Query: 279  QFQRDFIS---LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL-LWREKCLE-AA 333
             +QR  IS   +L     +Y ++FL    ++  A         A+ N+ LW  +      
Sbjct: 1349 -WQRPLISPLEVLAGNSGVYAVSFLHDGSIIATAG--------ADGNIQLWHSQDGSLLK 1399

Query: 334  TLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 391
            TL  NK      ++G  F   G  + S + D ++++W    G    TL+GH +  + +  
Sbjct: 1400 TLPGNKA-----IYGISFTPQGDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNF 1454

Query: 392  RNN--ILVSGNADSTVKVWDIVSG---------TKKLMFRICLFDGVHVVSGSLDTSIRV 440
              +   L S + D+TVK+W++  G         T ++ +     DG  + S S D +IR+
Sbjct: 1455 SPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASASADKTIRL 1514

Query: 441  WEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
            W++ SGNL  +L  H  L   +      ++L S +AD TVK+W    G  L T SG   H
Sbjct: 1515 WDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSG---H 1571

Query: 499  QSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFST-PLMSSFILNPFYFLIYSQPLLC 555
             + V    F  + R++ ++S+D TVK+W +     +T P   + +++  +          
Sbjct: 1572 SNVVYSSSFSPDGRYIASASEDKTVKIWQIDGHLLTTLPQHQAGVMSAIF---------S 1622

Query: 556  PHLQFNSRFVITSSDDGTVKLW 577
            P    + + +I+ S D T K+W
Sbjct: 1623 P----DGKTLISGSLDTTTKIW 1640

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9UKB1|FBW1B_HUMAN F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 92/409 (22%)

Query: 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE----LALYVLTFLQPE 303
           WS ++++  +  LI      Q  H+   ++P  QRDFI+ LP +    +A  +L++L   
Sbjct: 83  WSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDAR 142

Query: 304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAAT------------------LHRNKKTHVPD 345
            L  A   C+ W+ +  + +LW +K +E                     L +N+ T  P 
Sbjct: 143 SLCAAELVCKEWQRVISEGMLW-KKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPP 201

Query: 346 -----------------------------------------LFGFQFDGVHVVSGSLDTS 364
                                                    ++  Q+D   ++SG  D S
Sbjct: 202 NSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNS 261

Query: 365 IRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGT--------KK 416
           I++W+  S      L GH      ++    ++V+G++DSTV+VWD+ +G          +
Sbjct: 262 IKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNE 321

Query: 417 LMFRICLFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLTSGMELRNNILVSGN 473
            +  +   +G+ +V+ S D SI VW+  S     LR  L+GH++  + ++  +  +VS +
Sbjct: 322 AVLHLRFSNGL-MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSAS 380

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
            D T+KVW   + + ++TL+G   H+  + CLQ+  R V++ S D T++LWD++ G    
Sbjct: 381 GDRTIKVWSTSTCEFVRTLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 437

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
            L             + + + C  ++F+++ +++ + DG +K+WD++  
Sbjct: 438 VLEG-----------HEELVRC--IRFDNKRIVSGAYDGKIKVWDLQAA 473

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(FBXW11) mediates the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. SCF(FBXW11) mediates the ubiquitination of IFNAR1. Targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced a ubiquitin-mediated decrease in RCAN1. Mediates the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2. Is target of human immunodeficiency virus type 1 (HIV-1) protein VPU to polyubiquitinate and deplete BST2 from cells and antagonize its antiviral action.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	635
282847463	701	archipelago [Tribolium castaneum]	0.530	0.480	0.496	1e-118
270012799	701	archipelago [Tribolium castaneum]	0.530	0.480	0.496	1e-118
444724173	737	F-box/WD repeat-containing protein 7 [Tu	0.535	0.461	0.479	1e-114
328711450	648	PREDICTED: f-box/WD repeat-containing pr	0.535	0.524	0.460	1e-110
417412524	740	Putative cdc4, partial [Desmodus rotundu	0.535	0.459	0.455	1e-108
158294047	1456	AGAP005359-PA [Anopheles gambiae str. PE	0.524	0.228	0.449	1e-108
291401123	842	PREDICTED: F-box and WD repeat domain co	0.535	0.403	0.454	1e-108
440902791	706	F-box/WD repeat-containing protein 7 [Bo	0.535	0.481	0.454	1e-108
292609708	605	PREDICTED: f-box/WD repeat-containing pr	0.535	0.561	0.459	1e-108
348582428	711	PREDICTED: F-box/WD repeat-containing pr	0.535	0.478	0.454	1e-108

>gi|282847463|ref|NP_001164280.1| archipelago [Tribolium castaneum]

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/518 (49%), Positives = 290/518 (55%), Gaps = 181/518 (34%)

Query: 245 LKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304
            + WSNAERILAI +LI  CEPTQ+RHMMQ+IEPQFQRDFISLLPRELAL VL+FL+P+D
Sbjct: 229 FQKWSNAERILAISELIARCEPTQVRHMMQVIEPQFQRDFISLLPRELALNVLSFLEPKD 288

Query: 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLH---------------------------- 336
           LLRAAQTCRSWRFLAEDNLLW+EKC +A                                
Sbjct: 289 LLRAAQTCRSWRFLAEDNLLWKEKCRQAGIDEIPKRRCSPRSPGTQMSPWKAAYMRQHAI 348

Query: 337 ----RNKKTHVPDLFG---------FQFDGVHVVSGSLDTSIR----------------- 366
               R+K    P +            QF G  +VSGS D +++                 
Sbjct: 349 EMNWRSKPIRPPKMLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAITGKCLRTLVGHT 408

Query: 367 -----------------------VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADS 403
                                  VW+AE+G+  HTL GH S    M L  N +VSG+ D+
Sbjct: 409 GGVWSSQMSGATIISGSTDRTLKVWDAETGDCIHTLNGHTSTVRCMHLHGNKVVSGSRDA 468

Query: 404 TVKVWDI--------------------------VSGTKKLMFRI-------CL------- 423
           T++VWDI                          VSG    M ++       CL       
Sbjct: 469 TLRVWDIKTGACLHVLVGHLAAVRCVQYDGRLVVSGAYDYMVKVWNPEREECLHTLQGHT 528

Query: 424 -------FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADS 476
                  FDGVHVVSGSLDTSIRVWE E+G  +HTLMGHQSLTSGMELRNNILVSGNADS
Sbjct: 529 NRVYSLQFDGVHVVSGSLDTSIRVWEVETGACKHTLMGHQSLTSGMELRNNILVSGNADS 588

Query: 477 TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLM 536
           TVKVWDIV+GQCLQTLSG  KHQSAVTCLQFN+RFVITSSDDGTVKLWDV+TGEF     
Sbjct: 589 TVKVWDIVTGQCLQTLSGPYKHQSAVTCLQFNNRFVITSSDDGTVKLWDVRTGEF----- 643

Query: 537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS 596
                                                           IRNLV+LDSGGS
Sbjct: 644 ------------------------------------------------IRNLVALDSGGS 655

Query: 597 GGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDS 634
           GGVVWRIRA++TKLVCAVGSRNGTEETKLLVLDFDVDS
Sbjct: 656 GGVVWRIRANDTKLVCAVGSRNGTEETKLLVLDFDVDS 693

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012799|gb|EFA09247.1| archipelago [Tribolium castaneum]

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/518 (49%), Positives = 290/518 (55%), Gaps = 181/518 (34%)

Query: 245 LKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304
            + WSNAERILAI +LI  CEPTQ+RHMMQ+IEPQFQRDFISLLPRELAL VL+FL+P+D
Sbjct: 229 FQKWSNAERILAISELIARCEPTQVRHMMQVIEPQFQRDFISLLPRELALNVLSFLEPKD 288

Query: 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLH---------------------------- 336
           LLRAAQTCRSWRFLAEDNLLW+EKC +A                                
Sbjct: 289 LLRAAQTCRSWRFLAEDNLLWKEKCRQAGIDEIPKRRCSPRSPGTQMSPWKAAYMRQHAI 348

Query: 337 ----RNKKTHVPDLFG---------FQFDGVHVVSGSLDTSIR----------------- 366
               R+K    P +            QF G  +VSGS D +++                 
Sbjct: 349 EMNWRSKPIRPPKMLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAITGKCLRTLVGHT 408

Query: 367 -----------------------VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADS 403
                                  VW+AE+G+  HTL GH S    M L  N +VSG+ D+
Sbjct: 409 GGVWSSQMSGATIISGSTDRTLKVWDAETGDCIHTLNGHTSTVRCMHLHGNKVVSGSRDA 468

Query: 404 TVKVWDI--------------------------VSGTKKLMFRI-------CL------- 423
           T++VWDI                          VSG    M ++       CL       
Sbjct: 469 TLRVWDIKTGACLHVLVGHLAAVRCVQYDGRLVVSGAYDYMVKVWNPEREECLHTLQGHT 528

Query: 424 -------FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADS 476
                  FDGVHVVSGSLDTSIRVWE E+G  +HTLMGHQSLTSGMELRNNILVSGNADS
Sbjct: 529 NRVYSLQFDGVHVVSGSLDTSIRVWEVETGACKHTLMGHQSLTSGMELRNNILVSGNADS 588

Query: 477 TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLM 536
           TVKVWDIV+GQCLQTLSG  KHQSAVTCLQFN+RFVITSSDDGTVKLWDV+TGEF     
Sbjct: 589 TVKVWDIVTGQCLQTLSGPYKHQSAVTCLQFNNRFVITSSDDGTVKLWDVRTGEF----- 643

Query: 537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS 596
                                                           IRNLV+LDSGGS
Sbjct: 644 ------------------------------------------------IRNLVALDSGGS 655

Query: 597 GGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDS 634
           GGVVWRIRA++TKLVCAVGSRNGTEETKLLVLDFDVDS
Sbjct: 656 GGVVWRIRANDTKLVCAVGSRNGTEETKLLVLDFDVDS 693

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444724173|gb|ELW64787.1| F-box/WD repeat-containing protein 7 [Tupaia chinensis]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/498 (47%), Positives = 284/498 (57%), Gaps = 158/498 (31%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 293 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 352

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 353 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 412

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 413 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 472

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 473 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 532

Query: 415 KKLMFRI-------CL------------------------------FDGVHVVSGSLDTS 437
           +    R+       CL                              FDG+HVVSGSLDTS
Sbjct: 533 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKFDGIHVVSGSLDTS 592

Query: 438 IRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497
           IRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGNADSTVK+WDI +GQCLQTL G NK
Sbjct: 593 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 652

Query: 498 HQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557
           HQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF                          
Sbjct: 653 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-------------------------- 686

Query: 558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR 617
                                      IRNLV+L+SGGSGGVVWRIRAS TKLVCAVGSR
Sbjct: 687 ---------------------------IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 719

Query: 618 NGTEETKLLVLDFDVDSK 635
           NGTEETKLLVLDFDVD K
Sbjct: 720 NGTEETKLLVLDFDVDMK 737

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328711450|ref|XP_003244541.1| PREDICTED: f-box/WD repeat-containing protein 7-like isoform 2 [Acyrthosiphon pisum] gi|328711452|ref|XP_001950576.2| PREDICTED: f-box/WD repeat-containing protein 7-like isoform 1 [Acyrthosiphon pisum] gi|328711454|ref|XP_003244542.1| PREDICTED: f-box/WD repeat-containing protein 7-like isoform 3 [Acyrthosiphon pisum]

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/521 (46%), Positives = 284/521 (54%), Gaps = 181/521 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +T   WSNAER+LAI  L+D CEPTQ+RHM+QLIEPQFQRDFISLLP+ELALYVL++L+P
Sbjct: 181 KTFSKWSNAERMLAIDMLVDECEPTQVRHMLQLIEPQFQRDFISLLPKELALYVLSYLEP 240

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKC-------LEAATLH------------------- 336
           +DLL+AAQTC SWRFL+EDNLLWREKC        + +T+                    
Sbjct: 241 KDLLKAAQTCHSWRFLSEDNLLWREKCQNVNIPLTDPSTIKCSKNRSVTSPWKSSYMRHH 300

Query: 337 ------RNKKTHVPDLFG---------FQFDGVHVVSGSLDTSIR--------------- 366
                 R K   +P +            QF G  VVSGS D +++               
Sbjct: 301 AIEMNWRVKPIRMPIILKGHDDHVITCLQFCGNQVVSGSDDNTLKVWSVLTGKCLRTLVG 360

Query: 367 -------------------------VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA 401
                                    VW AE+G   HTL GH S    M L  N +VSG+ 
Sbjct: 361 HTGGVWSSQMAGNVIISGSTDRTLKVWNAETGQCTHTLYGHTSTVRCMHLHENKVVSGSR 420

Query: 402 DSTVKVWDIVSGTKKLMF-------RICLFDGVHVVS----------------------- 431
           D+++++WDI +G    +F       R   +DG  +VS                       
Sbjct: 421 DASLRLWDIKTGQCLSIFLGHQAAVRCVQYDGRLIVSGAYDYLVKVWDAESEICLHTLSG 480

Query: 432 -----------------GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA 474
                            GSLDTSIRVW+ E+G  +HTLMGHQSLTSGMELR+NILVSGNA
Sbjct: 481 HTNRVYSLQFDSTHVVSGSLDTSIRVWDVETGTCKHTLMGHQSLTSGMELRDNILVSGNA 540

Query: 475 DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTP 534
           DSTVKVWDI++GQCLQTLSG NKH SAVTCLQFN+RFV+TSSDDGTVKLWDVKTGEF   
Sbjct: 541 DSTVKVWDILTGQCLQTLSGSNKHNSAVTCLQFNTRFVVTSSDDGTVKLWDVKTGEF--- 597

Query: 535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG 594
                                                             IRNL++L+SG
Sbjct: 598 --------------------------------------------------IRNLIALESG 607

Query: 595 GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GSGGVVWRIRA+ETKLVCAVGSRNGTEETKL VLDFD D K
Sbjct: 608 GSGGVVWRIRANETKLVCAVGSRNGTEETKLFVLDFDADYK 648

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|417412524|gb|JAA52641.1| Putative cdc4, partial [Desmodus rotundus]

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/522 (45%), Positives = 283/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +T + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 272 KTFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 331

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 332 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 391

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 392 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 451

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 452 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 511

Query: 415 KKLMFRI-------CL--------------FDGVHVVSG--------------------- 432
           +    R+       CL              +DG  VVSG                     
Sbjct: 512 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 571

Query: 433 -------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                              SLDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 572 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 631

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G NKHQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF  
Sbjct: 632 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-- 689

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 690 ---------------------------------------------------IRNLVTLES 698

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 699 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 740

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158294047|ref|XP_315369.4| AGAP005359-PA [Anopheles gambiae str. PEST] gi|157015383|gb|EAA11813.4| AGAP005359-PA [Anopheles gambiae str. PEST]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/518 (44%), Positives = 281/518 (54%), Gaps = 185/518 (35%)

Query: 248  WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
            W++ ER+LA+ +LI+ CEPTQ+RHMM++IEPQFQRDFISLLP+ELAL VL++L+P+DLLR
Sbjct: 985  WTHVERLLAVDRLIEHCEPTQVRHMMKVIEPQFQRDFISLLPKELALQVLSYLEPKDLLR 1044

Query: 308  AAQTCRSWRFLAEDNLLWREKCLEAAT--------LHRNKKTHVPDLFG----------- 348
            AAQTCRSWRFLA+DNLLW+EKC E+            R +  ++P +             
Sbjct: 1045 AAQTCRSWRFLADDNLLWKEKCKESGIGIEPSTDRPKRGRTGNMPPISSPWKAAYMRQHI 1104

Query: 349  --------------------------FQFDGVHVVSGSLDTSIRV--------------- 367
                                       QF G  +VSGS D +++V               
Sbjct: 1105 IEMNWRSRPIRTAKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAITGKCLRTLTGH 1164

Query: 368  -------------------------WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD 402
                                     W+A++G   H L GH S    M L  N +VSG+ D
Sbjct: 1165 TGGVWSSQMSGNIIISGSTDRTLRVWKADTGQCMHILHGHTSTVRCMHLHGNKVVSGSRD 1224

Query: 403  STVKVWDIVSGTKKLMF-------RICLFDGVHVVSG----------------------- 432
            +T++VWD+  GT   M        R   +DG  +VSG                       
Sbjct: 1225 ATLRVWDVNLGTCLHMLVGHLAAVRCVQYDGKLIVSGAYDYMVKVWNPERQECLHTLQGH 1284

Query: 433  -----------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD 475
                             SLDTSIRVW+AE+G+ +H LMGHQSLTSGMELR NILVSGNAD
Sbjct: 1285 TNRVYSLQFDGIHVVSGSLDTSIRVWDAETGSCKHALMGHQSLTSGMELRQNILVSGNAD 1344

Query: 476  STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPL 535
            STVKVWDI++GQCLQTLSG NKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF    
Sbjct: 1345 STVKVWDIITGQCLQTLSGPNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF---- 1400

Query: 536  MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGG 595
                                                             IRNLV L+SGG
Sbjct: 1401 -------------------------------------------------IRNLVLLESGG 1411

Query: 596  SGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD 633
            SGGVVWRIRA++TKL+CAVGSRNGTEETKL+VLDFDV+
Sbjct: 1412 SGGVVWRIRANDTKLICAVGSRNGTEETKLMVLDFDVE 1449

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291401123|ref|XP_002716951.1| PREDICTED: F-box and WD repeat domain containing 7 [Oryctolagus cuniculus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/522 (45%), Positives = 282/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 374 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 433

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 434 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 493

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 494 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 553

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 554 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 613

Query: 415 KKLMFRI-------CL--------------FDGVHVVSG--------------------- 432
           +    R+       CL              +DG  VVSG                     
Sbjct: 614 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 673

Query: 433 -------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                              SLDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 674 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 733

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G NKHQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF  
Sbjct: 734 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-- 791

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 792 ---------------------------------------------------IRNLVTLES 800

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 801 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 842

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440902791|gb|ELR53534.1| F-box/WD repeat-containing protein 7 [Bos grunniens mutus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/522 (45%), Positives = 282/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 238 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 297

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 298 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 357

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 358 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 417

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 418 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 477

Query: 415 KKLMFRI-------CL--------------FDGVHVVSG--------------------- 432
           +    R+       CL              +DG  VVSG                     
Sbjct: 478 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 537

Query: 433 -------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                              SLDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 538 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 597

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G NKHQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF  
Sbjct: 598 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-- 655

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 656 ---------------------------------------------------IRNLVTLES 664

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 665 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 706

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|292609708|ref|XP_693393.4| PREDICTED: f-box/WD repeat-containing protein 7 [Danio rerio]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/522 (45%), Positives = 286/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           RT + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLPRELAL+VL+FL+P
Sbjct: 137 RTFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPRELALHVLSFLEP 196

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKK-------THVP-------- 344
           +DLL+AAQTCR WR LAEDNLLW+EKC E      LH  ++       TH P        
Sbjct: 197 KDLLQAAQTCRYWRILAEDNLLWKEKCKEEGIDEPLHIKRRKVIKPGFTHSPWKSAYIRQ 256

Query: 345 ----------DLFG--------------FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                     DL                 QF G  +VSGS D +++VW A +G    TL+
Sbjct: 257 HRIDTNWRRGDLKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 316

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 317 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 376

Query: 415 KKLMFRI-------CL--------------FDGVHVVSG--------------------- 432
           +    R+       CL              +DG  VVSG                     
Sbjct: 377 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 436

Query: 433 -------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                              SLDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 437 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 496

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G +KHQSAVTCLQFN  FVITSSDDGTVKLWD++TGEF  
Sbjct: 497 ADSTVKIWDIKTGQCLQTLQGPHKHQSAVTCLQFNKNFVITSSDDGTVKLWDLRTGEF-- 554

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 555 ---------------------------------------------------IRNLVTLES 563

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 564 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 605

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348582428|ref|XP_003476978.1| PREDICTED: F-box/WD repeat-containing protein 7 isoform 1 [Cavia porcellus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/522 (45%), Positives = 282/522 (54%), Gaps = 182/522 (34%)

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
           +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct: 243 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 302

Query: 303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAA---TLHRNKKTHVPDLF------------ 347
           +DLL+AAQTCR WR LAEDNLLWREKC E      LH  ++  +   F            
Sbjct: 303 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 362

Query: 348 ---------------------------GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
                                        QF G  +VSGS D +++VW A +G    TL+
Sbjct: 363 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 422

Query: 381 GHQSLTSGMELRNNILVSGNADSTVKVWD--------------------------IVSGT 414
           GH       ++R+NI++SG+ D T+KVW+                          +VSG+
Sbjct: 423 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 482

Query: 415 KKLMFRI-------CL--------------FDGVHVVSG--------------------- 432
           +    R+       CL              +DG  VVSG                     
Sbjct: 483 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 542

Query: 433 -------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                              SLDTSIRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGN
Sbjct: 543 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 602

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           ADSTVK+WDI +GQCLQTL G NKHQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF  
Sbjct: 603 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-- 660

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593
                                                              IRNLV+L+S
Sbjct: 661 ---------------------------------------------------IRNLVTLES 669

Query: 594 GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK 635
           GGSGGVVWRIRAS TKLVCAVGSRNGTEETKLLVLDFDVD K
Sbjct: 670 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 711

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	635
UNIPROTKB|F1MNN4	627	FBXW7 "Uncharacterized protein	0.508	0.515	0.435	6.5e-67
UNIPROTKB|E2QUZ3	712	FBXW7 "Uncharacterized protein	0.508	0.453	0.435	6.5e-67
UNIPROTKB|Q969H0	707	FBXW7 "F-box/WD repeat-contain	0.508	0.456	0.435	6.5e-67
UNIPROTKB|F1N9W1	587	FBXW7 "Uncharacterized protein	0.508	0.550	0.435	8.2e-67
MGI|MGI:1354695	629	Fbxw7 "F-box and WD-40 domain	0.508	0.513	0.435	8.2e-67
ZFIN|ZDB-GENE-090313-79	760	fbxw7 "F-box and WD repeat dom	0.508	0.425	0.435	8.2e-67
FB|FBgn0041171	1326	ago "archipelago" [Drosophila	0.494	0.236	0.397	8e-60
RGD|2321145	588	Fbxw7 "F-box and WD repeat dom	0.508	0.549	0.435	1.1e-66
WB|WBGene00004767	587	sel-10 [Caenorhabditis elegans	0.466	0.504	0.344	3.1e-44
UNIPROTKB|Q93794	587	sel-10 "F-box/WD repeat-contai	0.466	0.504	0.344	3.1e-44

UNIPROTKB|F1MNN4 FBXW7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 155/356 (43%), Positives = 219/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct:   159 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 218

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
             +DLL+AAQTCR WR LAEDNLLWREKC E      LH + +K   P      +   ++  
Sbjct:   219 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 278

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  E +S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   279 HRIDTNWRRGELKSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 334

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   335 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 394

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   395 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 450

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   451 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 494

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

UNIPROTKB|E2QUZ3 FBXW7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 155/356 (43%), Positives = 219/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct:   244 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 303

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
             +DLL+AAQTCR WR LAEDNLLWREKC E      LH + +K   P      +   ++  
Sbjct:   304 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 363

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  E +S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   364 HRIDTNWRRGELKSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 419

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   420 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 479

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   480 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 535

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   536 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 579

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

UNIPROTKB|Q969H0 FBXW7 "F-box/WD repeat-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 155/356 (43%), Positives = 219/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct:   239 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 298

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
             +DLL+AAQTCR WR LAEDNLLWREKC E      LH + +K   P      +   ++  
Sbjct:   299 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 358

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  E +S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   359 HRIDTNWRRGELKSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 414

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   415 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 474

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   475 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 530

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   531 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 574

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA;TAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IDA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0050821 "protein stabilization" evidence=IDA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IMP

GO:2000346 "negative regulation of hepatocyte proliferation" evidence=ISS

GO:0055088 "lipid homeostasis" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0010883 "regulation of lipid storage" evidence=ISS

GO:0010868 "negative regulation of triglyceride biosynthetic process" evidence=ISS

GO:0001944 "vasculature development" evidence=TAS

GO:0045746 "negative regulation of Notch signaling pathway" evidence=ISS

GO:2000639 "negative regulation of SREBP signaling pathway" evidence=ISS

UNIPROTKB|F1N9W1 FBXW7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 155/356 (43%), Positives = 218/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct:   119 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 178

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
              DLL+AAQTCR WR LAEDNLLWREKC E      LH + +K   P      +   ++  
Sbjct:   179 RDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 238

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  E +S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   239 HRIDTNWRRGELKSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 294

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   295 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 354

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   355 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 410

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   411 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 454

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1354695 Fbxw7 "F-box and WD-40 domain protein 7" [Mus musculus (taxid:10090)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 155/356 (43%), Positives = 219/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct:   161 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 220

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
             +DLL+AAQTCR WR LAEDNLLWREKC E      LH + +K   P      +   ++  
Sbjct:   221 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQ 280

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  E +S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   281 HRIDTNWRRGELKSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 336

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   337 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 396

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   397 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 452

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   453 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 496

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007062 "sister chromatid cohesion" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=ISO;ISA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0030324 "lung development" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0032876 "negative regulation of DNA endoreduplication" evidence=ISO

GO:0034644 "cellular response to UV" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0050821 "protein stabilization" evidence=ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISO

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

ZFIN|ZDB-GENE-090313-79 fbxw7 "F-box and WD repeat domain containing 7" [Danio rerio (taxid:7955)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 155/356 (43%), Positives = 220/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             RT + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLPRELAL+VL+FL+P
Sbjct:   292 RTFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPRELALHVLSFLEP 351

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
             +DLL+AAQTCR WR LAEDNLLW+EKC E      LH + +K   P      +   ++  
Sbjct:   352 KDLLQAAQTCRYWRILAEDNLLWKEKCKEEGIDEPLHIKRRKVIKPGFTHSPWKSAYIRQ 411

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  + +S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   412 HRIDTNWRRGDLKSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 467

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   468 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 527

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   528 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 583

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   584 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 627

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

FB|FBgn0041171 ago "archipelago" [Drosophila melanogaster (taxid:7227)]

 Score = 624 (224.7 bits), Expect = 8.0e-60, P = 8.0e-60
 Identities = 140/352 (39%), Positives = 211/352 (59%)

Query:   248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
             WS+ ER+LA+ +LID C+P+Q+RHMM++IEPQFQRDFISLLPRELAL+VL++L+P+DLLR
Sbjct:   855 WSHVERLLALDRLIDHCDPSQVRHMMKVIEPQFQRDFISLLPRELALFVLSYLEPKDLLR 914

Query:   308 AAQTCRSWRFLAEDNLLWREKCLEAATL--------HRNKKTHVPDLFGFQFDGVHVVSG 359
             AAQTCRSWRFL +DNLLW+EKC +A  L         R +  ++P +    +   ++   
Sbjct:   915 AAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRPKRGRDGNMPPIAS-PWKAAYMRQH 973

Query:   360 SLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM 418
              ++ +   W +        L GH   + + ++   N +VSG+ D+T+KVW  V+G K L 
Sbjct:   974 IIEMN---WRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNG-KCLR 1029

Query:   419 FRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILV 470
               +    GV         ++SGS D +++VW+ +SG   HTL GH S    M L  + +V
Sbjct:  1030 TLVGHTGGVWSSQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVV 1089

Query:   471 SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE 530
             SG+ D+T++VWDI  G CL  L G   H +AV C+Q++ + +++ + D  VK+W  +  E
Sbjct:  1090 SGSRDATLRVWDIEQGSCLHVLVG---HLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQE 1146

Query:   531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
                 L      N     +YS       LQF+   V++ S D ++++WDV+TG
Sbjct:  1147 CLHTLQGH--TNR----VYS-------LQFDGLHVVSGSLDTSIRVWDVETG 1185

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008054 "cyclin catabolic process" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0030162 "regulation of proteolysis" evidence=TAS

GO:0030332 "cyclin binding" evidence=TAS

GO:0007096 "regulation of exit from mitosis" evidence=TAS

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0060253 "negative regulation of glial cell proliferation" evidence=IGI

GO:0007411 "axon guidance" evidence=IMP

RGD|2321145 Fbxw7 "F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 155/356 (43%), Positives = 218/356 (61%)

Query:   243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
             +  + WS  E++LA+ +LIDSCEPTQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P
Sbjct:   161 KMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEP 220

Query:   303 EDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT---LH-RNKKTHVPDLFGFQFDGVHVVS 358
             +DLL+AAQTCR WR LAEDNLLWREKC E      LH + +K   P      +   ++  
Sbjct:   221 KDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKIIKPGFIHSPWKSAYIRQ 280

Query:   359 GSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417
               +DT+ R  E  S  +   L GH   + + ++   N +VSG+ D+T+KVW  V+G K L
Sbjct:   281 HRIDTNWRRGELRSPKV---LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCL 336

Query:   418 MFRICLFDGVH--------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 469
                +    GV         ++SGS D +++VW AE+G   HTL GH S    M L    +
Sbjct:   337 RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 396

Query:   470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
             VSG+ D+T++VWDI +GQCL  L G   H +AV C+Q++ R V++ + D  VK+WD +T 
Sbjct:   397 VSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET- 452

Query:   530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                T L +   L      +YS       LQF+   V++ S D ++++WDV+TG  I
Sbjct:   453 --ETCLHT---LQGHTNRVYS-------LQFDGIHVVSGSLDTSIRVWDVETGNCI 496

GO:0001570 "vasculogenesis" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007062 "sister chromatid cohesion" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0032876 "negative regulation of DNA endoreduplication" evidence=ISO

GO:0034644 "cellular response to UV" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISO

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

WB|WBGene00004767 sel-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 113/328 (34%), Positives = 170/328 (51%)

Query:   319 AEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLR 376
             ++DN L +  C++   +      H   ++  Q    G ++VSGS D +++VW    G+L 
Sbjct:   273 SDDNTL-KVWCIDKGEVMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTVKVWSTVDGSLL 331

Query:   377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF-------RICLFDGVHV 429
             HTL GH S    M +  +ILV+G+ D+T++VWD+ SG             R   FDG  V
Sbjct:   332 HTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFDGTTV 391

Query:   430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM--ELRNNILVSGNADSTVKVWDIV--S 485
             VSG  D ++++W A +G    TL GH +    +  E   +I+ SG+ D++++VWD     
Sbjct:   392 VSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPE 451

Query:   486 GQ-CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF 544
             GQ C+  L G   H S  + +Q     +++ + D  V++WD+  G          +L+  
Sbjct:   452 GQECVALLQG---HTSLTSGMQLRGNILVSCNADSHVRVWDIHEGT------CVHMLSGH 502

Query:   545 YFLIYSQPLLCPHLQ-FNSRFVITSSDDGTVKLWDVKTGEFIRNXXXXXXXXXXXXXWRI 603
                I S       LQ F    V TSSDDGTVKLWD++ G  IR+             WR+
Sbjct:   503 RSAITS-------LQWFGRNMVATSSDDGTVKLWDIERGALIRDLVTLDSGGNGGCIWRL 555

Query:   604 RASETKLVCAVGSRNGTEETKLLVLDFD 631
              ++ T L CAVGSRN TEETK+++LDFD
Sbjct:   556 CSTSTMLACAVGSRNNTEETKVILLDFD 583

GO:0008593 "regulation of Notch signaling pathway" evidence=IGI

GO:0030424 "axon" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q93794 sel-10 "F-box/WD repeat-containing protein sel-10" [Caenorhabditis elegans (taxid:6239)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 113/328 (34%), Positives = 170/328 (51%)

Query:   319 AEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLR 376
             ++DN L +  C++   +      H   ++  Q    G ++VSGS D +++VW    G+L 
Sbjct:   273 SDDNTL-KVWCIDKGEVMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTVKVWSTVDGSLL 331

Query:   377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF-------RICLFDGVHV 429
             HTL GH S    M +  +ILV+G+ D+T++VWD+ SG             R   FDG  V
Sbjct:   332 HTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFDGTTV 391

Query:   430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM--ELRNNILVSGNADSTVKVWDIV--S 485
             VSG  D ++++W A +G    TL GH +    +  E   +I+ SG+ D++++VWD     
Sbjct:   392 VSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPE 451

Query:   486 GQ-CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF 544
             GQ C+  L G   H S  + +Q     +++ + D  V++WD+  G          +L+  
Sbjct:   452 GQECVALLQG---HTSLTSGMQLRGNILVSCNADSHVRVWDIHEGT------CVHMLSGH 502

Query:   545 YFLIYSQPLLCPHLQ-FNSRFVITSSDDGTVKLWDVKTGEFIRNXXXXXXXXXXXXXWRI 603
                I S       LQ F    V TSSDDGTVKLWD++ G  IR+             WR+
Sbjct:   503 RSAITS-------LQWFGRNMVATSSDDGTVKLWDIERGALIRDLVTLDSGGNGGCIWRL 555

Query:   604 RASETKLVCAVGSRNGTEETKLLVLDFD 631
              ++ T L CAVGSRN TEETK+++LDFD
Sbjct:   556 CSTSTMLACAVGSRNNTEETKVILLDFD 583

GO:0005515 "protein binding" evidence=IPI

GO:0030424 "axon" evidence=IDA

GO:0046660 "female sex differentiation" evidence=IMP

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	635
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-40
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-37
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-36
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-36
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-33
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-17
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-14
pfam00646	48	pfam00646, F-box, F-box domain	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (374), Expect = 5e-40
 Identities = 80/261 (30%), Positives = 120/261 (45%), Gaps = 46/261 (17%)

Query: 19  KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKG 78
           + LKGH    +TC+ FS    P    + + S    + +        W     +  + LKG
Sbjct: 3   RTLKGHTG-GVTCVAFS----PDGKLLATGSGDGTIKV--------WDLETGELLRTLKG 49

Query: 79  HDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKC---------------------LLV 116
           H   V      + G+ + SGS D T+++W   TG+C                     +L 
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109

Query: 117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEEC 174
           S SRD T++VW +E+G+CL  L GH   V  V +  DG  V S + D  +K+W+  T +C
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Query: 175 LHAELQETE----VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ 230
           +      T     V  S       +++S S D T+K+W  +TGKCL TL GH  GV S  
Sbjct: 170 VATLTGHTGEVNSVAFSPD---GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226

Query: 231 MA--GNIIISGSTDRTLKGWS 249
            +  G ++ SGS D T++ W 
Sbjct: 227 FSPDGYLLASGSEDGTIRVWD 247

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  141 bits (357), Expect = 9e-38
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 29/238 (12%)

Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSG 413
           + SGS D +IR+W+ E+G    TL GH S  S +    +  IL S + D T+KVWD+ +G
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125

Query: 414 TKKLMFR------ICLF---DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 464
                 R        +    DG  V S S D +I++W+  +G    TL GH    + +  
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 465 --RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT 520
                 L+S ++D T+K+WD+ +G+CL TL G   H++ V  + F  +   + + S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGT 242

Query: 521 VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD 578
           +++WD++TGE    L             ++  +       + + + + S DGT+++WD
Sbjct: 243 IRVWDLRTGECVQTLSG-----------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  140 bits (354), Expect = 3e-37
 Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 38/286 (13%)

Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNI-LVSGNADSTVKVWD 409
           DG  + +GS D +I+VW+ E+G L  TL GH   +       +   L SG++D T+++WD
Sbjct: 20  DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79

Query: 410 IVSGTK-------KLMFRICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS 460
           + +G                 F      + S S D +I+VW+ E+G    TL GH     
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--W 137

Query: 461 GMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT 514
              +        + S + D T+K+WD+ +G+C+ TL+G   H   V  + F  +   +++
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLS 194

Query: 515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574
           SS DGT+KLWD+ TG+    L      N    + +S          +   + + S+DGT+
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSP---------DGYLLASGSEDGTI 243

Query: 575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
           ++WD++TGE ++ L    +      V  +  S      A GS +GT
Sbjct: 244 RVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSADGT 284

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  137 bits (348), Expect = 2e-36
 Identities = 100/402 (24%), Positives = 158/402 (39%), Gaps = 123/402 (30%)

Query: 134 CLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR 193
               L GH   V CV                  ++PD +                     
Sbjct: 1   LRRTLKGHTGGVTCVA-----------------FSPDGK--------------------- 22

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS-SQMA-GNIIISGSTDRTLKGWSNA 251
             + +GS D T+KVW   TG+ LRTL GHTG V   +  A G  + SGS+D+T++ W   
Sbjct: 23  -LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD-- 79

Query: 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA-- 309
              L  G+ +     T   H                      +  + F     +L ++  
Sbjct: 80  ---LETGECVR----TLTGH-------------------TSYVSSVAFSPDGRILSSSSR 113

Query: 310 -QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW 368
            +T + W            KCL     H +    V     F  DG  V S S D +I++W
Sbjct: 114 DKTIKVWDVETG-------KCLTTLRGHTDWVNSVA----FSPDGTFVASSSQDGTIKLW 162

Query: 369 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF-DGV 427
           +  +G    TL GH                       +V             +    DG 
Sbjct: 163 DLRTGKCVATLTGHTG---------------------EVN-----------SVAFSPDGE 190

Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNN-ILVSGNADSTVKVWDIVS 485
            ++S S D +I++W+  +G    TL GH+  + S     +  +L SG+ D T++VWD+ +
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Query: 486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
           G+C+QTLSG   H ++VT L +  + + + + S DGT+++WD
Sbjct: 251 GECVQTLSG---HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  137 bits (347), Expect = 2e-36
 Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 34/261 (13%)

Query: 375 LRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGTKKLMFR---------ICL 423
           LR TL GH    + +       +L +G+ D T+KVWD+ +G      +            
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 481
            DG ++ SGS D +IR+W+ E+G    TL GH S  S +    +  IL S + D T+KVW
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 482 DIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF 539
           D+ +G+CL TL G   H   V  + F  +  FV +SS DGT+KLWD++TG+    L    
Sbjct: 121 DVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH- 176

Query: 540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGV 599
                  + +S          +   +++SS DGT+KLWD+ TG+ +  L      G    
Sbjct: 177 -TGEVNSVAFSP---------DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-----GHENG 221

Query: 600 VWRIRASETKLVCAVGSRNGT 620
           V  +  S    + A GS +GT
Sbjct: 222 VNSVAFSPDGYLLASGSEDGT 242

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  130 bits (328), Expect = 9e-34
 Identities = 74/275 (26%), Positives = 119/275 (43%), Gaps = 56/275 (20%)

Query: 10  WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
           W     +  + LKGH   V      +            SS         +++ + W    
Sbjct: 36  WDLETGELLRTLKGHTGPVRDVAASADG----TYLASGSSD--------KTIRL-WDLET 82

Query: 70  IKDPKVLKGHDDHVITCLQFSGSR--IVSGSDDNTLKVWSATTGKC-------------- 113
            +  + L GH  +V + + FS     + S S D T+KVW   TGKC              
Sbjct: 83  GECVRTLTGHTSYV-SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141

Query: 114 -------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
                   + S S+D T+++W + +G+C+  L GH   V  V +  DG+ ++S + D  +
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSR--------IVSGSDDNTLKVWSATTGKCL 216
           K+W+  T +CL   L+       H   + S         + SGS+D T++VW   TG+C+
Sbjct: 202 KLWDLSTGKCLG-TLR------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254

Query: 217 RTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
           +TL GHT  V S   +  G  + SGS D T++ W 
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  128 bits (325), Expect = 2e-33
 Identities = 98/347 (28%), Positives = 142/347 (40%), Gaps = 71/347 (20%)

Query: 74  KVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
           + LKGH    +TC+ FS         D  L           L +GS D T++VW +E+GE
Sbjct: 3   RTLKGHTG-GVTCVAFS--------PDGKL-----------LATGSGDGTIKVWDLETGE 42

Query: 134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
            L  L GH   VR V    DG  + SG+ D  +++W+ +T EC+   L      +S    
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-TLTGHTSYVSSVAF 101

Query: 192 LRSR--IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLKG 247
                 + S S D T+KVW   TGKCL TL GHT  V S   + +   + S S D T+K 
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
           W            + + +                    +L      +  + F    + L 
Sbjct: 162 WD-----------LRTGKCVA-----------------TLTGHTGEVNSVAFSPDGEKLL 193

Query: 308 AA---QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTS 364
           ++    T + W            KCL     H N    V     F  DG  + SGS D +
Sbjct: 194 SSSSDGTIKLWDLST-------GKCLGTLRGHENGVNSV----AFSPDGYLLASGSEDGT 242

Query: 365 IRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 409
           IRVW+  +G    TL GH +  + +        L SG+AD T+++WD
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 98.6 bits (244), Expect = 8e-22
 Identities = 78/332 (23%), Positives = 141/332 (42%), Gaps = 43/332 (12%)

Query: 88  QFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC 147
                R + G  ++   +  +  GK L    S D T+++W + +G+ L  L GH   V  
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 148 VQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA-LRSRIVSGSDDN 203
           + +    G L+ SG+ D  +++W+  T + L + L      +   ++   S + SGS D 
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 204 TLKVWSA-TTGKCLRTLIGHTGGVWSSQ--MAGNIIISGSTDRTLKGWSNAERILAIGQL 260
           T+++W   ++   LRTL GH+  V S      G ++ SGS+D T++ W            
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD----------- 312

Query: 261 IDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAE 320
                          +E       ++L   E  +  L+F     LL +          ++
Sbjct: 313 ---------------LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG--------GSD 349

Query: 321 DNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
           D  +          L   +         F  DG  V SGS D ++R+W+  +G+L   L 
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 381 GHQSLTSGMELRNN--ILVSGNADSTVKVWDI 410
           GH S  + ++   +   L SG++D+T+++WD+
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.5 bits (241), Expect = 2e-21
 Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 42/311 (13%)

Query: 349 FQFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---ILVSGNADST 404
           F  DG  + SGS LD +I++W+  +G    TL GH    S +    +   ++ SG++D T
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222

Query: 405 VKVWDI---------VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMG 454
           +++WD+         +SG    +      DG  + SGS D +IR+W+  S  +L  TL G
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 455 HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---S 509
           H S    +       +L SG++D TV++WD+ +G+ L +L+ +  H+  V+ L F+   S
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-HEGPVSSLSFSPDGS 341

Query: 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569
             V   SDDGT++LWD++TG+    L     +    F              + R V + S
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP------------DGRVVSSGS 389

Query: 570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-----EETK 624
            DGTV+LWD+ TG  +RNL      G    V  +  S      A GS + T      +T 
Sbjct: 390 TDGTVRLWDLSTGSLLRNL-----DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Query: 625 LLVLDFDVDSK 635
           L  + F  D K
Sbjct: 445 LKSVSFSPDGK 455

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 1e-20
 Identities = 118/465 (25%), Positives = 196/465 (42%), Gaps = 66/465 (14%)

Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKI 166
           +    LL++   D+ + +  + S      L GH  ++  + +  DG+L++SG+ D  +K+
Sbjct: 36  SESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91

Query: 167 WNPDTEECLHAELQETEVELSHGYALRSR------IVSGSDDNTLKVWSATT-GKCLRTL 219
           W+ D  E L   L+          AL S       + S S D T+K+W  +T GK +RTL
Sbjct: 92  WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151

Query: 220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ 279
            GH+  V S                   +S   ++LA G  +D          ++L + +
Sbjct: 152 EGHSESVTSLA-----------------FSPDGKLLASGSSLDGT--------IKLWDLR 186

Query: 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNK 339
             +   +L      +  L F     LL A+ +            LW     +      + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG------TIRLWDLSTGKLLRSTLSG 240

Query: 340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNIL 396
            +       F  DG  + SGS D +IR+W+  S  +L  TL GH S    +       +L
Sbjct: 241 HSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGV------------HVVSGSLDTSIRVWEAE 444
            SG++D TV++WD+ +G       +   +G              V  GS D +IR+W+  
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 445 SGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT 503
           +G    TL GH ++ S        ++ SG+ D TV++WD+ +G  L+ L G   H S VT
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG---HTSRVT 416

Query: 504 CLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
            L F  + + + + S D T++LWD+KT   S        +     
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 1e-20
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 35/288 (12%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELRNN-----ILVSGNA 401
           F  DG  ++SGS D +I++W+ ++G   ++     H S  S + L +      +L S + 
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 402 DSTVKVWDIVSGTKKLMFRICLFDGV-----------HVVSGSLDTSIRVWEAESGNLRH 450
           D TVK+WD+ +  K +       + V                SLD +I++W+  +G    
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 451 TLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507
           TL GH    S +    +   ++ SG++D T+++WD+ +G+ L++        S V+    
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-SGHSDSVVSSFSP 251

Query: 508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567
           +   + + S DGT++LWD+++       +S           +S  +L      + + + +
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSG----------HSSSVLSVAFSPDGKLLAS 301

Query: 568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615
            S DGTV+LWD++TG+ +    SL   G  G V  +  S    +   G
Sbjct: 302 GSSDGTVRLWDLETGKLL---SSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 3e-19
 Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 37/271 (13%)

Query: 340 KTHVPDLFGFQF---DGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSG-MELRNN 394
             H   +    F    G+ + SGS D +IR+W+  +G  LR TL GH            +
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS 254

Query: 395 ILVSGNADSTVKVWDIVSGTKKLMFRI--------CLFDGVH--VVSGSLDTSIRVWEAE 444
           +L SG++D T+++WD+ S +  L              F      + SGS D ++R+W+ E
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 445 SGNLRH--TLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499
           +G L    TL GH+   S +    +   ++  G+ D T+++WD+ +G+ L+TL    +  
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL----EGH 370

Query: 500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557
           S V  + F  + R V + S DGTV+LWD+ TG     L              +  +    
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH-----------TSRVTSLD 419

Query: 558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
              + + + + S D T++LWD+KT     + 
Sbjct: 420 FSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 107/467 (22%), Positives = 179/467 (38%), Gaps = 78/467 (16%)

Query: 24  HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV 83
            +   +      G S    S +   S    + +     +       +    +L+GH+D +
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL-LLRGHEDSI 68

Query: 84  IT-CLQFSGSRIVSGSDDNTLKVWSATTGK--------------------------CLLV 116
            +      G  ++SGS D T+K+W    G+                           LL 
Sbjct: 69  TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128

Query: 117 SGSRDATLRVWHIES-GECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTE 172
           S S D T+++W + + G+ +  L GH  +V  + +      L    + D  +K+W+  T 
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188

Query: 173 ECLHAELQETEVELSHGYA--LRSRIVSGSDDNTLKVWSATTGKCLR-TLIGHTGGVWSS 229
           + L      T+   S  ++      I SGS D T+++W  +TGK LR TL GH+  V SS
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 230 -QMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
               G+++ SGS+D T++ W              S   T   H   ++   F  D   L 
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSS--------SSLLRTLSGHSSSVLSVAFSPDGKLLA 300

Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348
                              +  T R W     D    +         H      V  L  
Sbjct: 301 ----------------SGSSDGTVRLW-----DLETGKLLSSLTLKGHEGP---VSSLSF 336

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKV 407
                + V  GS D +IR+W+  +G    TL GH ++ S        ++ SG+ D TV++
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRL 396

Query: 408 WDIVSGT-----KKLMFRICL----FDGVHVVSGSLDTSIRVWEAES 445
           WD+ +G+          R+       DG  + SGS D +IR+W+ ++
Sbjct: 397 WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 73/270 (27%), Positives = 105/270 (38%), Gaps = 42/270 (15%)

Query: 10  WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
           W  R  K    L GH D V + L FS                     S       W    
Sbjct: 183 WDLRTGKPLSTLAGHTDPV-SSLAFS-----------PDGGLLIASGSSDGTIRLWDLST 230

Query: 70  -IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL-------------- 114
                  L GH D V++     GS + SGS D T+++W   +   L              
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290

Query: 115 --------LVSGSRDATLRVWHIESGECLHVL--VGHLAAVRCVQY---DGKLVVSGAYD 161
                   L SGS D T+R+W +E+G+ L  L   GH   V  + +      LV  G+ D
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350

Query: 162 YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG 221
             +++W+  T + L      + V           + SGS D T+++W  +TG  LR L G
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Query: 222 HTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
           HT  V S   +  G  + SGS+D T++ W 
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.2 bits (204), Expect = 8e-17
 Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 39/306 (12%)

Query: 335 LHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-- 392
           L  +  +      G    G+ +++   D+ + + +  S  LR    GH+   + +     
Sbjct: 21  LGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR----GHEDSITSIAFSPD 76

Query: 393 NNILVSGNADSTVKVWDIVSGTKKLM------------FRICLFDGVHVVS--GSLDTSI 438
             +L+SG++D T+K+WD+ +G K +               +   DG  ++    SLD ++
Sbjct: 77  GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136

Query: 439 RVWEAES-GNLRHTLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSG 494
           ++W+  + G L  TL GH    + +    +   +    + D T+K+WD+ +G+ L TL+G
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196

Query: 495 RNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
                S++         + + S DGT++LWD+ TG+    L S+   +    +    P  
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK---LLRSTLSGHSDSVVSSFSP-- 251

Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV 614
                 +   + + S DGT++LWD+++     +L+   SG S   V  +  S    + A 
Sbjct: 252 ------DGSLLASGSSDGTIRLWDLRSS---SSLLRTLSGHSSS-VLSVAFSPDGKLLAS 301

Query: 615 GSRNGT 620
           GS +GT
Sbjct: 302 GSSDGT 307

Length = 466

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 65.6 bits (161), Expect = 7e-14
 Identities = 24/46 (52%), Positives = 30/46 (65%)

Query: 285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330
           +S LP E+ L + ++L P DLLR A  CR WR LA D+ LWR  CL
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330
             +  LP +L L +L+ L P+DLLR +   + WR L +   LW+++ L
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 5/43 (11%)

Query: 485 SGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
           SG+ L+TL G   H   VT + F  + +++ + SDDGT+KLWD
Sbjct: 1   SGELLKTLKG---HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
           G+ L+TL G   H   VT + F  +   + + SDDGTV++WD
Sbjct: 1   GKLLRTLKG---HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328
           LP E+   +L+ L P+DLLR  +  R WR L + +  W + 
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 30/209 (14%)

Query: 37  KSFPCESFIRSSS----PWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGS 92
           K F CES I+       P   L    +   I W +  IK  +V   + + V+     + S
Sbjct: 508 KIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY-IKS-QVASSNFEGVVQVWDVARS 565

Query: 93  RIVSGSDDNTLKVWS---ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL---AAVR 146
           ++V+   ++  +VWS   ++    LL SGS D ++++W I  G    V +G +   A + 
Sbjct: 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSIGTIKTKANIC 621

Query: 147 CVQY---DGKLVVSGAYDYMVKIW---NPDTEECLHAELQETEVELSHGYALRSRIVSGS 200
           CVQ+    G+ +  G+ D+ V  +   NP    C      +T   +   +   S +VS S
Sbjct: 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR--FVDSSTLVSSS 679

Query: 201 DDNTLKVW------SATTGKCLRTLIGHT 223
            DNTLK+W      S      L + +GHT
Sbjct: 680 TDNTLKLWDLSMSISGINETPLHSFMGHT 708

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 131 SGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
           SGE L  L GH   V  V +  DGK + SG+ D  +K+W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
           G+ L  L GH   V  V +  DG L+ SG+ D  V++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 26/134 (19%)

Query: 66  RTRPIKDPKVLKGHDDHVITCLQFSGSR---IVSGSDDNTLKVWSATTGKCLLV------ 116
            T  +     LKGH+   ++ L FS      +  GSDD T+++W   TGK L        
Sbjct: 314 ETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372

Query: 117 --------------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY 160
                         SGS D T+R+W + +G  L  L GH + V  + +  DGK + SG+ 
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432

Query: 161 DYMVKIWNPDTEEC 174
           D  +++W+  T   
Sbjct: 433 DNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 74  KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS 107
           K LKGH   V T + FS  G  + SGSDD T+K+W 
Sbjct: 6   KTLKGHTGPV-TSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 74  KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS 107
           + LKGH   V T + FS  G+ + SGSDD T++VW 
Sbjct: 5   RTLKGHTGPV-TSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 23/159 (14%)

Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIV 484
            V S + +  ++VW+     L   +  H+     ++  +    +L SG+ D +VK+W I 
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606

Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNS---RFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
            G  + T+    K ++ + C+QF S   R +   S D  V  +D++  +   PL +    
Sbjct: 607 QGVSIGTI----KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCT---- 656

Query: 542 NPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDV 579
                 +        +++F +S  +++SS D T+KLWD+
Sbjct: 657 ------MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 212 TGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
           +G+ L+TL GHTG V S   +  G  + SGS D T+K W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 213 GKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
           GK LRTL GHTG V S   +  GN++ SGS D T++ W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	635
KOG0319|consensus	775		100.0
KOG0319|consensus	775		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0291|consensus	893		100.0
KOG0318|consensus	603		100.0
KOG0306|consensus	888		100.0
KOG0318|consensus	603		100.0
KOG0306|consensus	888		100.0
KOG1408|consensus	1080		100.0
KOG0291|consensus	893		100.0
KOG1539|consensus	910		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG2106|consensus	626		100.0
KOG0272|consensus	459		100.0
KOG1408|consensus	1080		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
KOG0296|consensus	399		100.0
KOG0273|consensus	524		100.0
KOG1539|consensus	910		100.0
KOG0281|consensus	499		100.0
KOG0281|consensus	499		100.0
KOG0296|consensus	399		100.0
KOG0295|consensus	406		100.0
KOG0315|consensus	311		100.0
KOG0276|consensus	794		100.0
KOG0285|consensus	460		100.0
KOG0315|consensus	311		100.0
KOG0285|consensus	460		100.0
KOG0295|consensus	406		100.0
KOG1063|consensus	764		100.0
KOG0265|consensus	338		100.0
KOG0263|consensus	707		100.0
KOG1063|consensus	764		100.0
KOG0284|consensus	464		100.0
KOG2048|consensus	691		100.0
KOG0645|consensus	312		100.0
KOG2106|consensus	626		100.0
KOG0292|consensus	1202		100.0
KOG0282|consensus	503		100.0
KOG0645|consensus	312		100.0
KOG0276|consensus	794		100.0
KOG0316|consensus	307		100.0
KOG0292|consensus	1202		100.0
KOG0263|consensus	707		100.0
KOG0274|consensus	537		100.0
KOG0265|consensus	338		100.0
KOG0293|consensus	519		100.0
KOG0316|consensus	307		100.0
KOG0274|consensus	537		100.0
KOG0284|consensus	464		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266|consensus	456		100.0
KOG0282|consensus	503		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0313|consensus	423		100.0
KOG0266|consensus	456		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293|consensus	519		99.98
KOG0313|consensus	423		99.98
KOG0278|consensus	334		99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG1407|consensus	313		99.97
KOG0643|consensus	327		99.97
KOG0278|consensus	334		99.97
KOG0299|consensus	479		99.97
KOG0275|consensus	508		99.97
KOG0288|consensus	459		99.96
KOG2048|consensus	691		99.96
KOG0275|consensus	508		99.96
KOG1446|consensus	311		99.96
KOG0294|consensus	362		99.96
KOG0301|consensus	745		99.96
KOG0310|consensus	487		99.96
KOG0277|consensus	311		99.96
KOG0643|consensus	327		99.96
KOG1445|consensus	1012		99.96
KOG0300|consensus	481		99.96
KOG1407|consensus	313		99.96
KOG0277|consensus	311		99.96
KOG0646|consensus	476		99.96
KOG0305|consensus	484		99.96
KOG0308|consensus	735		99.96
KOG0288|consensus	459		99.96
KOG1446|consensus	311		99.96
KOG0301|consensus	745		99.96
KOG1036|consensus	323		99.95
KOG0294|consensus	362		99.95
KOG0300|consensus	481		99.95
KOG0283|consensus	712		99.95
KOG0283|consensus	712		99.95
KOG0299|consensus	479		99.95
KOG0289|consensus	506		99.95
KOG0641|consensus	350		99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0772|consensus	641		99.95
KOG0973|consensus	942		99.95
KOG0310|consensus	487		99.94
KOG0641|consensus	350		99.94
KOG0308|consensus	735		99.94
KOG0640|consensus	430		99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0268|consensus	433		99.94
KOG0268|consensus	433		99.94
KOG0647|consensus	347		99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0973|consensus	942		99.94
KOG0647|consensus	347		99.94
KOG0640|consensus	430		99.94
KOG4283|consensus	397		99.94
KOG2096|consensus	420		99.94
KOG0305|consensus	484		99.94
KOG0772|consensus	641		99.93
KOG0289|consensus	506		99.93
KOG0646|consensus	476		99.93
KOG1036|consensus	323		99.93
PTZ00420	568	coronin; Provisional	99.93
KOG1332|consensus	299		99.93
KOG2055|consensus	514		99.92
KOG1445|consensus	1012		99.92
KOG1332|consensus	299		99.92
KOG1963|consensus	792		99.91
KOG2096|consensus	420		99.91
KOG2445|consensus	361		99.91
KOG1274|consensus	933		99.91
KOG4283|consensus	397		99.91
KOG0639|consensus	705		99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1538|consensus	1081		99.9
KOG0264|consensus	422		99.9
KOG0267|consensus	825		99.89
KOG0264|consensus	422		99.89
KOG0321|consensus	720		99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0639|consensus	705		99.88
KOG2055|consensus	514		99.88
KOG1274|consensus	933		99.88
KOG0650|consensus	733		99.88
KOG4378|consensus	673		99.88
KOG1273|consensus	405		99.88
KOG2445|consensus	361		99.88
KOG0321|consensus	720		99.87
KOG1273|consensus	405		99.86
KOG4378|consensus	673		99.86
KOG0650|consensus	733		99.86
KOG1034|consensus	385		99.85
KOG0269|consensus	839		99.85
KOG1034|consensus	385		99.85
KOG0270|consensus	463		99.85
KOG4328|consensus	498		99.85
KOG0269|consensus	839		99.85
KOG0649|consensus	325		99.84
KOG0649|consensus	325		99.84
KOG0267|consensus	825		99.84
KOG0302|consensus	440		99.84
KOG2110|consensus	391		99.84
KOG4328|consensus	498		99.83
KOG0270|consensus	463		99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1963|consensus	792		99.82
KOG0322|consensus	323		99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG2919|consensus	406		99.82
KOG1517|consensus	1387		99.81
KOG0302|consensus	440		99.81
KOG0322|consensus	323		99.81
KOG1188|consensus	376		99.8
KOG1009|consensus	434		99.8
KOG1538|consensus	1081		99.8
KOG2919|consensus	406		99.78
KOG1310|consensus	758		99.78
KOG1188|consensus	376		99.78
KOG4227|consensus	609		99.77
KOG1517|consensus	1387		99.76
KOG0307|consensus	1049		99.76
KOG0642|consensus	577		99.76
KOG1524|consensus	737		99.75
KOG1912|consensus	1062		99.74
KOG1009|consensus	434		99.74
KOG0642|consensus	577		99.74
KOG0644|consensus	1113		99.74
KOG0307|consensus	1049		99.74
KOG2111|consensus	346		99.74
KOG1240|consensus	1431		99.74
KOG1334|consensus	559		99.72
KOG0974|consensus	967		99.71
KOG0644|consensus	1113		99.71
KOG0303|consensus	472		99.7
KOG1310|consensus	758		99.69
KOG0771|consensus	398		99.68
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.67
KOG1007|consensus	370		99.67
KOG1587|consensus	555		99.67
KOG0290|consensus	364		99.66
KOG1524|consensus	737		99.66
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.66
KOG0303|consensus	472		99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG1587|consensus	555		99.65
KOG4227|consensus	609		99.64
PRK11028	330	6-phosphogluconolactonase; Provisional	99.64
KOG2111|consensus	346		99.63
KOG1334|consensus	559		99.62
KOG1272|consensus	545		99.62
KOG1007|consensus	370		99.61
KOG2110|consensus	391		99.61
KOG0290|consensus	364		99.61
KOG2321|consensus	703		99.6
KOG1240|consensus	1431		99.59
KOG4497|consensus	447		99.58
KOG2394|consensus	636		99.58
KOG0771|consensus	398		99.58
KOG3881|consensus	412		99.58
KOG1912|consensus	1062		99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
PRK11028	330	6-phosphogluconolactonase; Provisional	99.55
KOG0974|consensus	967		99.55
KOG3881|consensus	412		99.54
KOG2041|consensus	1189		99.54
KOG4497|consensus	447		99.51
KOG2394|consensus	636		99.51
KOG1409|consensus	404		99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.48
KOG1523|consensus	361		99.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.47
PRK01742	429	tolB translocation protein TolB; Provisional	99.46
KOG1523|consensus	361		99.46
KOG1272|consensus	545		99.46
KOG4547|consensus	541		99.45
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.44
KOG1409|consensus	404		99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
KOG2139|consensus	445		99.38
KOG2321|consensus	703		99.36
KOG2041|consensus	1189		99.36
KOG4547|consensus	541		99.33
KOG2139|consensus	445		99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.3
PRK03629	429	tolB translocation protein TolB; Provisional	99.3
KOG2315|consensus	566		99.29
PRK03629	429	tolB translocation protein TolB; Provisional	99.27
PRK04922	433	tolB translocation protein TolB; Provisional	99.26
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.26
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.25
KOG0280|consensus	339		99.24
PRK02889	427	tolB translocation protein TolB; Provisional	99.22
KOG1354|consensus	433		99.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.21
PRK04922	433	tolB translocation protein TolB; Provisional	99.2
PRK02889	427	tolB translocation protein TolB; Provisional	99.19
KOG2315|consensus	566		99.17
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
PRK05137	435	tolB translocation protein TolB; Provisional	99.14
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.14
KOG1354|consensus	433		99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.11
KOG2314|consensus	698		99.09
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.09
KOG4190|consensus	1034		99.08
KOG4532|consensus	344		99.07
KOG0280|consensus	339		99.07
KOG0309|consensus	1081		99.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.04
KOG1275|consensus	1118		99.03
KOG4190|consensus	1034		99.01
KOG1064|consensus	2439		99.01
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
KOG4649|consensus	354		98.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.99
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.98
PRK00178	430	tolB translocation protein TolB; Provisional	98.96
KOG0882|consensus	558		98.95
PRK04792	448	tolB translocation protein TolB; Provisional	98.95
KOG4649|consensus	354		98.95
KOG1064|consensus	2439		98.95
KOG2695|consensus	425		98.94
KOG0309|consensus	1081		98.93
PRK00178	430	tolB translocation protein TolB; Provisional	98.88
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.87
KOG2314|consensus	698		98.87
PRK01029	428	tolB translocation protein TolB; Provisional	98.83
PRK01029	428	tolB translocation protein TolB; Provisional	98.83
KOG3914|consensus	390		98.81
PRK04792	448	tolB translocation protein TolB; Provisional	98.8
KOG4714|consensus	319		98.77
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.76
KOG3914|consensus	390		98.76
COG4946	668	Uncharacterized protein related to the periplasmic	98.73
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
KOG1275|consensus	1118		98.7
PRK04043	419	tolB translocation protein TolB; Provisional	98.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.67
KOG4714|consensus	319		98.65
KOG4532|consensus	344		98.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.64
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG2695|consensus	425		98.57
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.56
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.55
KOG0882|consensus	558		98.54
KOG2066|consensus	846		98.52
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.51
KOG1645|consensus	463		98.37
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.35
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	98.28
KOG2066|consensus	846		98.27
KOG1645|consensus	463		98.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.25
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.24
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.2
PRK02888	635	nitrous-oxide reductase; Validated	98.19
PRK04043	419	tolB translocation protein TolB; Provisional	98.18
KOG3621|consensus	726		98.18
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.15
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.14
KOG2114|consensus	933		98.13
KOG2114|consensus	933		98.12
PRK02888	635	nitrous-oxide reductase; Validated	98.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
KOG3617|consensus	1416		97.99
KOG3621|consensus	726		97.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.95
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.94
KOG1920|consensus	1265		97.92
KOG1832|consensus	1516		97.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.87
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.73
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.73
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.72
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.67
KOG1832|consensus	1516		97.66
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.64
KOG4441|consensus	571		97.6
KOG1008|consensus	783		97.55
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.48
KOG1920|consensus	1265		97.45
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.37
PHA02713	557	hypothetical protein; Provisional	97.36
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.31
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.27
KOG1897|consensus	1096		97.26
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.24
KOG4441|consensus	571		97.22
KOG3617|consensus	1416		97.15
KOG2079|consensus	1206		97.15
PHA02713	557	hypothetical protein; Provisional	97.14
KOG2444|consensus	238		97.1
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.08
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.03
KOG4640|consensus	665		96.96
KOG4640|consensus	665		96.92
PHA03098	534	kelch-like protein; Provisional	96.92
KOG4499|consensus	310		96.87
KOG4499|consensus	310		96.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.85
KOG2444|consensus	238		96.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.84
KOG2395|consensus	644		96.71
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.56
KOG2079|consensus	1206		96.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.51
KOG1008|consensus	783		96.5
COG5276	370	Uncharacterized conserved protein [Function unknow	96.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.4
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.36
PHA02790	480	Kelch-like protein; Provisional	96.27
PHA03098	534	kelch-like protein; Provisional	96.05
COG5276	370	Uncharacterized conserved protein [Function unknow	96.05
KOG2395|consensus	644		96.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.9
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.84
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.78
KOG1897|consensus	1096		95.76
PHA02790	480	Kelch-like protein; Provisional	95.7
COG3391	381	Uncharacterized conserved protein [Function unknow	95.63
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.62
PRK13616	591	lipoprotein LpqB; Provisional	95.45
PRK13616	591	lipoprotein LpqB; Provisional	95.35
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.23
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.17
PLN02153	341	epithiospecifier protein	94.74
COG3391	381	Uncharacterized conserved protein [Function unknow	94.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.68
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.16
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.16
PLN02193	470	nitrile-specifier protein	94.09
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.71
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.68
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.68
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.51
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.49
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	93.36
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.19
KOG1916|consensus	1283		93.14
KOG2280|consensus	829		92.99
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.96
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.63
PLN02193	470	nitrile-specifier protein	92.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.55
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.42
KOG2280|consensus	829		92.41
COG5167	776	VID27 Protein involved in vacuole import and degra	92.35
PLN02153	341	epithiospecifier protein	92.34
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.01
KOG1896|consensus	1366		91.79
KOG3630|consensus	1405		91.73
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.69
COG5167	776	VID27 Protein involved in vacuole import and degra	91.56
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.07
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.78
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.39
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.97
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	89.7
KOG2377|consensus	657		89.59
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.47
KOG1900|consensus	1311		89.46
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.19
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.87
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.78
KOG1916|consensus	1283		88.51
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.5
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.9
KOG2247|consensus	615		87.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.6
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.17
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	85.93
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.72
KOG4460|consensus	741		85.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.49
COG3292	671	Predicted periplasmic ligand-binding sensor domain	85.28
KOG2247|consensus	615		85.12
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.5
KOG1900|consensus	1311		84.49
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.2
KOG1983|consensus	993		84.06
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.25
KOG0379|consensus	482		83.11
KOG3630|consensus	1405		82.33
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.21
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	81.99
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.92
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	81.42
PRK10115	686	protease 2; Provisional	81.13
KOG3616|consensus	1636		80.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	80.13

>KOG0319|consensus

Probab=100.00  E-value=2e-55  Score=406.13  Aligned_cols=503  Identities=21%  Similarity=0.365  Sum_probs=407.0

Q ss_pred             eeeeecCCCCC-Ccccc-ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeec-cCcce
Q psy18018          7 EINWRTRPIKD-PKVLK-GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKG-HDDHV   83 (635)
Q Consensus         7 ~~~~~~~~~~~-~~~l~-gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~-h~~~v   83 (635)
                      +.+.++.+... .+... +-.+.+ ++++++    ||+++|.++...+.+.        +|+.++++.++.++. |++++
T Consensus        42 Vi~idv~t~~~~l~s~~~ed~d~i-ta~~l~----~d~~~L~~a~rs~llr--------v~~L~tgk~irswKa~He~Pv  108 (775)
T KOG0319|consen   42 VIIIDVATGSIALPSGSNEDEDEI-TALALT----PDEEVLVTASRSQLLR--------VWSLPTGKLIRSWKAIHEAPV  108 (775)
T ss_pred             EEEEEccCCceecccCCccchhhh-heeeec----CCccEEEEeeccceEE--------EEEcccchHhHhHhhccCCCe
Confidence            33445454444 33333 444555 999999    8999999998766655        699999999999998 99998


Q ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEECCCCcEE-----------------------EEEeeCCCcEEEEeCCCCeE-EEE
Q psy18018         84 ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL-----------------------LVSGSRDATLRVWHIESGEC-LHV  137 (635)
Q Consensus        84 i~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l-----------------------l~~~~~dg~i~vwd~~~~~~-~~~  137 (635)
                       .-++|+  +.+||+|+.|+.|+|||+..+.+.                       |++|..|+.+++||+.+... +..
T Consensus       109 -i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~  187 (775)
T KOG0319|consen  109 -ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT  187 (775)
T ss_pred             -EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHH
Confidence             689999  889999999999999999987764                       89999999999999996654 788


Q ss_pred             eeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccC-----CCEEEEEeCCCcEEEEEC
Q psy18018        138 LVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL-----RSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       138 l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~vwd~  210 (635)
                      +..|.+.|++++|  |+..+++++.|..+.+||+...+.....+.............     +.++++++.+|.+++||.
T Consensus       188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~  267 (775)
T KOG0319|consen  188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS  267 (775)
T ss_pred             HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence            8999999999999  999999999999999999988777766655555544444444     568999999999999999


Q ss_pred             CCCeEEEEEeCC-CCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        211 TTGKCLRTLIGH-TGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       211 ~~~~~~~~~~~h-~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      ++++++...... ...+..+..  ....++....|..+.++|.++.......                            
T Consensus       268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i----------------------------  319 (775)
T KOG0319|consen  268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI----------------------------  319 (775)
T ss_pred             ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh----------------------------
Confidence            999888665433 222443333  3567778888899999976654321100                            


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                                                                       .........+.-+.|+.++++++++.+.+++
T Consensus       320 -------------------------------------------------vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  320 -------------------------------------------------VGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             -------------------------------------------------cCCchhheeeeecCCccceEEEEeCCCceEE
Confidence                                                             0111111122225667899999999999999


Q ss_pred             EEccCCceEEeeeCCCcceeEEE-Ee-CCEEEEEeCCCcEEEEEccCCccee--------------EEEEEeeCCcEEEE
Q psy18018        368 WEAESGNLRHTLMGHQSLTSGME-LR-NNILVSGNADSTVKVWDIVSGTKKL--------------MFRICLFDGVHVVS  431 (635)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~v~~l~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~l~~  431 (635)
                      |+..+..+. .+.+|+..|.++. ++ +.+|++++.|.++++|.++++....              ..........++++
T Consensus       351 y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvs  429 (775)
T KOG0319|consen  351 YTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVS  429 (775)
T ss_pred             EecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEE
Confidence            998877665 8899999999999 44 6699999999999999885442211              11112234568999


Q ss_pred             EeCCCcEEEEeCCCCce---------eeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccc
Q psy18018        432 GSLDTSIRVWEAESGNL---------RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS  500 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~---------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  500 (635)
                      ++.|.++++|++...+.         ..+...|...|++++..  ..++++|+.|++.+||+++..+....+.+   |..
T Consensus       430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG---H~R  506 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG---HTR  506 (775)
T ss_pred             ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC---Ccc
Confidence            99999999999976211         11335699999998875  45999999999999999999999999998   999


Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      .|.|+.|  +.+.++|+|.|++|+||.+.+..+++++.+           |...|..+.|-.+++.|++++.||.+++|+
T Consensus       507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-----------H~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-----------HTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-----------ccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            9999999  467999999999999999999999999987           688999999999999999999999999999


Q ss_pred             CCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        579 VKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ++++++++++     ..|.+.||+++-+|.+.++++|+.||.
T Consensus       576 ikt~eC~~tl-----D~H~DrvWaL~~~~~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  576 IKTNECEMTL-----DAHNDRVWALSVSPLLDMFVTGGGDGR  612 (775)
T ss_pred             ccchhhhhhh-----hhccceeEEEeecCccceeEecCCCeE
Confidence            9999999999     799999999999999999999999997

>KOG0319|consensus

Probab=100.00  E-value=1.2e-51  Score=381.22  Aligned_cols=468  Identities=21%  Similarity=0.374  Sum_probs=397.8

Q ss_pred             ccceeeeeecCCCCCCccccc-cccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCc
Q psy18018          3 HRSVEINWRTRPIKDPKVLKG-HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDD   81 (635)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~g-h~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~   81 (635)
                      +.-+++.|..+..+..+..+. |..|| --++|+    |.|.++|+|+.++.+        .+||...+.+.+.|+||.+
T Consensus        82 rs~llrv~~L~tgk~irswKa~He~Pv-i~ma~~----~~g~LlAtggaD~~v--------~VWdi~~~~~th~fkG~gG  148 (775)
T KOG0319|consen   82 RSQLLRVWSLPTGKLIRSWKAIHEAPV-ITMAFD----PTGTLLATGGADGRV--------KVWDIKNGYCTHSFKGHGG  148 (775)
T ss_pred             ccceEEEEEcccchHhHhHhhccCCCe-EEEEEc----CCCceEEeccccceE--------EEEEeeCCEEEEEecCCCc
Confidence            344588999999999999998 99999 589999    999999999986554        4699999999999999999


Q ss_pred             ceEEEEEEc----CCEEEEeeCCCcEEEEECCCCcE-E---------------------EEEeeCCCcEEEEeCCCCeEE
Q psy18018         82 HVITCLQFS----GSRIVSGSDDNTLKVWSATTGKC-L---------------------LVSGSRDATLRVWHIESGECL  135 (635)
Q Consensus        82 ~vi~~~~~s----~~~l~s~~~d~~v~vWd~~~~~~-l---------------------l~~~~~dg~i~vwd~~~~~~~  135 (635)
                      .| .++.|.    -..|++|..|+++++||+.+... +                     +++++.|..+.+||+.+.+..
T Consensus       149 vV-ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l  227 (775)
T KOG0319|consen  149 VV-SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL  227 (775)
T ss_pred             eE-EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence            77 999998    45689999999999999996655 1                     899999999999999888777


Q ss_pred             EEeeCCCcceEEEEe--c-----CCEEEEEeCCCeEEEEeCCCccceeecccc--ceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018        136 HVLVGHLAAVRCVQY--D-----GKLVVSGAYDYMVKIWNPDTEECLHAELQE--TEVELSHGYALRSRIVSGSDDNTLK  206 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~--~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~  206 (635)
                      .++.- ...+-++.+  +     +.+++|++.+|.+++||.++++.+......  ............+.++..+.|..+.
T Consensus       228 ~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~  306 (775)
T KOG0319|consen  228 KTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLF  306 (775)
T ss_pred             heech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEE
Confidence            77643 345556666  3     569999999999999999999877654433  2233344455678888999999999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEeeC---CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccc
Q psy18018        207 VWSATTGKCLRTLIGHTGGVWSSQMAG---NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD  283 (635)
Q Consensus       207 vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (635)
                      ++|.++.++.+.+-|..+.|..+.|-|   ++++.++..+.+|+++..+....                           
T Consensus       307 l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---------------------------  359 (775)
T KOG0319|consen  307 LYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---------------------------  359 (775)
T ss_pred             EEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---------------------------
Confidence            999999999999999999999999954   89999999999999976553210                           


Q ss_pred             eeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE--ecCcEEEEecC
Q psy18018        284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ--FDGVHVVSGSL  361 (635)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~l~~~~~  361 (635)
                                                                            ...+|...++++.  .+|.+|++|+.
T Consensus       360 ------------------------------------------------------ii~GH~e~vlSL~~~~~g~llat~sK  385 (775)
T KOG0319|consen  360 ------------------------------------------------------IIPGHTEAVLSLDVWSSGDLLATGSK  385 (775)
T ss_pred             ------------------------------------------------------EEeCchhheeeeeecccCcEEEEecC
Confidence                                                                  1233555555555  57789999999


Q ss_pred             CCeEEEEEccCCc----eEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeE----------------
Q psy18018        362 DTSIRVWEAESGN----LRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLM----------------  418 (635)
Q Consensus       362 dg~i~v~~~~~~~----~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~----------------  418 (635)
                      |.++++|.++.+.    ++....+|+..|.+++++   ..+|++++.|+++++|++...+....                
T Consensus       386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd  465 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD  465 (775)
T ss_pred             CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence            9999999885433    456678999999999997   57999999999999999987322111                


Q ss_pred             --EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018        419 --FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       419 --~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                        ....+|+++.+++|+.|++.++|+++......++.+|...+.+++|.+.  .+++++.|++|+||.+.+..+++++.+
T Consensus       466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence              1137889999999999999999999999999999999999999999754  999999999999999999999999999


Q ss_pred             CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC
Q psy18018        495 RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG  572 (635)
Q Consensus       495 ~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  572 (635)
                         |...|...+|  +++.|++++.||-+++|++++++++..+..           |...|.+++.+|+..+++||+.||
T Consensus       546 ---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-----------H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  546 ---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-----------HNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             ---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-----------ccceeEEEeecCccceeEecCCCe
Confidence               9999999999  799999999999999999999999998886           799999999999999999999999


Q ss_pred             eEEEEeCC
Q psy18018        573 TVKLWDVK  580 (635)
Q Consensus       573 ~v~iwd~~  580 (635)
                      .|.+|.=.
T Consensus       612 ~i~~wkD~  619 (775)
T KOG0319|consen  612 RIIFWKDV  619 (775)
T ss_pred             EEEEeecC
Confidence            99999643

>KOG0271|consensus

Probab=100.00  E-value=1.5e-52  Score=356.93  Aligned_cols=328  Identities=30%  Similarity=0.523  Sum_probs=277.2

Q ss_pred             CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV  148 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l  148 (635)
                      ++-..+.||.+.| .|++|+  |++||||+.|.++|+||+.                     +..+..+.++|...|.|+
T Consensus       106 rCssS~~GH~e~V-l~~~fsp~g~~l~tGsGD~TvR~WD~~---------------------TeTp~~t~KgH~~WVlcv  163 (480)
T KOG0271|consen  106 RCSSSIAGHGEAV-LSVQFSPTGSRLVTGSGDTTVRLWDLD---------------------TETPLFTCKGHKNWVLCV  163 (480)
T ss_pred             eeccccCCCCCcE-EEEEecCCCceEEecCCCceEEeeccC---------------------CCCcceeecCCccEEEEE
Confidence            4456789999998 799999  9999999999999888876                     456788999999999999


Q ss_pred             Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018        149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV  226 (635)
Q Consensus       149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  226 (635)
                      +|  ||+.||+|+.||+|++||..+++++                                        .+.+.+|...|
T Consensus       164 awsPDgk~iASG~~dg~I~lwdpktg~~~----------------------------------------g~~l~gH~K~I  203 (480)
T KOG0271|consen  164 AWSPDGKKIASGSKDGSIRLWDPKTGQQI----------------------------------------GRALRGHKKWI  203 (480)
T ss_pred             EECCCcchhhccccCCeEEEecCCCCCcc----------------------------------------cccccCcccce
Confidence            99  9999999999999988887766533                                        24578999999


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      ++++|.+-.                                                                       
T Consensus       204 t~Lawep~h-----------------------------------------------------------------------  212 (480)
T KOG0271|consen  204 TALAWEPLH-----------------------------------------------------------------------  212 (480)
T ss_pred             eEEeecccc-----------------------------------------------------------------------
Confidence            999974321                                                                       


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  386 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v  386 (635)
                                                                ..|..++|++++.||.++|||+..+.++..+.+|+.+|
T Consensus       213 ------------------------------------------l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  213 ------------------------------------------LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV  250 (480)
T ss_pred             ------------------------------------------cCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence                                                      34456689999999999999999999999999999999


Q ss_pred             eEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec
Q psy18018        387 SGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  465 (635)
Q Consensus       387 ~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  465 (635)
                      +|+.|. ..++++++.|++|++|+.                                 ..|.+..++++|...|+.++.+
T Consensus       251 TCvrwGG~gliySgS~DrtIkvw~a---------------------------------~dG~~~r~lkGHahwvN~lals  297 (480)
T KOG0271|consen  251 TCVRWGGEGLIYSGSQDRTIKVWRA---------------------------------LDGKLCRELKGHAHWVNHLALS  297 (480)
T ss_pred             EEEEEcCCceEEecCCCceEEEEEc---------------------------------cchhHHHhhcccchheeeeecc
Confidence            999998 456666666655555554                                 4455555566666655555443


Q ss_pred             --------------------------------------CCEEEEEeCCCcEEEEECCCC-ceeEEecCCCcccccEEEEE
Q psy18018        466 --------------------------------------NNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       466 --------------------------------------~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~  506 (635)
                                                            +..+++|++|.++.+|+.... +++..+.+   |..-|..+.
T Consensus       298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg---Hq~lVn~V~  374 (480)
T KOG0271|consen  298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG---HQALVNHVS  374 (480)
T ss_pred             chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc---hhhheeeEE
Confidence                                                  346999999999999997644 46667776   999999998


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      |  |++++|++|-|..|++||.++|+.+..+++           |-..|..++||.|.++|++|+.|.++++||+++.++
T Consensus       375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-----------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  375 FSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-----------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             ECCCccEEEEeecccceeeeeCCCcchhhhhhh-----------ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence            8  799999999999999999999999999887           688999999999999999999999999999999998


Q ss_pred             EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      ...+     ++|.+.|.++.|+|||+.+++|+.|..  +++|.
T Consensus       444 ~~DL-----pGh~DEVf~vDwspDG~rV~sggkdkv--~~lw~  479 (480)
T KOG0271|consen  444 KQDL-----PGHADEVFAVDWSPDGQRVASGGKDKV--LRLWR  479 (480)
T ss_pred             cccC-----CCCCceEEEEEecCCCceeecCCCceE--EEeec
Confidence            8888     689999999999999999999999997  66663

>KOG0271|consensus

Probab=100.00  E-value=4.2e-52  Score=354.21  Aligned_cols=356  Identities=28%  Similarity=0.460  Sum_probs=301.2

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVS   96 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s   96 (635)
                      ..+.||.++| -|++||    |+|+.||+|+.+        ..+.+||..+..+.+++++|..+| .|++|+  |+.||+
T Consensus       109 sS~~GH~e~V-l~~~fs----p~g~~l~tGsGD--------~TvR~WD~~TeTp~~t~KgH~~WV-lcvawsPDgk~iAS  174 (480)
T KOG0271|consen  109 SSIAGHGEAV-LSVQFS----PTGSRLVTGSGD--------TTVRLWDLDTETPLFTCKGHKNWV-LCVAWSPDGKKIAS  174 (480)
T ss_pred             cccCCCCCcE-EEEEec----CCCceEEecCCC--------ceEEeeccCCCCcceeecCCccEE-EEEEECCCcchhhc
Confidence            5788999999 599999    999999999964        444569999999999999999999 899999  999999


Q ss_pred             eeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-------cCCEEEEEeCCCeEEEEeC
Q psy18018         97 GSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-------DGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus        97 ~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-------~~~~l~s~~~dg~v~iwd~  169 (635)
                      |+.||+|++||.++|++                    ....|.+|...|++++|       ..++||+++.||+|+|||+
T Consensus       175 G~~dg~I~lwdpktg~~--------------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  175 GSKDGSIRLWDPKTGQQ--------------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             cccCCeEEEecCCCCCc--------------------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence            99999999999998753                    35678899999999999       4679999999999999999


Q ss_pred             CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEE-EeeCceeEEEe
Q psy18018        170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIII-SGSTDRTLKGW  248 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~-s~~~dg~i~~w  248 (635)
                      ..+.++..+.+|...+.+..+...+++++|+.|++|++|+...|++.+.+++|...|+.++.+.++.+ +|..|-+=+-.
T Consensus       235 ~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~  314 (480)
T KOG0271|consen  235 KLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP  314 (480)
T ss_pred             cCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999998755443 33222110000


Q ss_pred             cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018        249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK  328 (635)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (635)
                      ...                                                                           .+
T Consensus       315 ~~~---------------------------------------------------------------------------se  319 (480)
T KOG0271|consen  315 KSF---------------------------------------------------------------------------SE  319 (480)
T ss_pred             CCh---------------------------------------------------------------------------HH
Confidence            000                                                                           00


Q ss_pred             hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC-CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEE
Q psy18018        329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKV  407 (635)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~i  407 (635)
                      +. ...+.+..       ...-..+.++++|+.|.++.+|+... .+++..+.+|...|+.+.|+               
T Consensus       320 ~~-~~Al~rY~-------~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS---------------  376 (480)
T KOG0271|consen  320 EQ-KKALERYE-------AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS---------------  376 (480)
T ss_pred             HH-HHHHHHHH-------HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC---------------
Confidence            00 00000000       00122457899999999999999764 45778889999988888875               


Q ss_pred             EEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCC
Q psy18018        408 WDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       408 wd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~  485 (635)
                                      ||++++++++.|..|++|+.++|+.+..+++|-..|..++|+  .++|++|+.|.++++||+++
T Consensus       377 ----------------Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  377 ----------------PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             ----------------CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence                            889999999999999999999999999999999999999995  45999999999999999999


Q ss_pred             CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd  525 (635)
                      .+....+.+   |...|.++.|  ||..+++|+.|..+++|.
T Consensus       441 kKl~~DLpG---h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  441 KKLKQDLPG---HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecccCCC---CCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999998   9999999999  799999999999999995

>KOG0291|consensus

Probab=100.00  E-value=5.9e-48  Score=357.36  Aligned_cols=485  Identities=20%  Similarity=0.314  Sum_probs=381.7

Q ss_pred             ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCC--------CCCCceeeccCcceEEEEEEc--CCEE
Q psy18018         25 DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP--------IKDPKVLKGHDDHVITCLQFS--GSRI   94 (635)
Q Consensus        25 ~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~--------~~~~~~l~~h~~~vi~~~~~s--~~~l   94 (635)
                      ..+| .|+.||    |||+++|.+.         ++.+.||..+.        +.+.++..||-+.+ .++.|+  .++|
T Consensus        96 k~~v-~~i~fS----Png~~fav~~---------gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi-~si~Ws~DSr~l  160 (893)
T KOG0291|consen   96 KRGV-GAIKFS----PNGKFFAVGC---------GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDI-TSIDWSDDSRLL  160 (893)
T ss_pred             cCcc-ceEEEC----CCCcEEEEEe---------cceeEEEecCcchhcccCcceEeeeecCCccce-eEEEeccCCceE
Confidence            3567 999999    9999999997         44555687553        34456778999998 899999  8999


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      ++|+.|.++++|++...+                   +-..+.+.+|..+|.+.-|  +...+.+.+.||.+.+|.....
T Consensus       161 ~~gsrD~s~rl~~v~~~k-------------------~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~  221 (893)
T KOG0291|consen  161 VTGSRDLSARLFGVDGNK-------------------NLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLR  221 (893)
T ss_pred             EeccccceEEEEEecccc-------------------ccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCC
Confidence            999999999999987443                   2335678899999999999  8888999999999999987611


Q ss_pred             -----------------------cc-ee----------ecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy18018        173 -----------------------EC-LH----------AELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR  217 (635)
Q Consensus       173 -----------------------~~-~~----------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  217 (635)
                                             +. .+          -+... ..+..+.+.+..+.|++|-..|...++++....+++
T Consensus       222 P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih  301 (893)
T KOG0291|consen  222 PPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIH  301 (893)
T ss_pred             CcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEE
Confidence                                   11 00          00011 122333334445788899999999999999999999


Q ss_pred             EEeCCCCCeEEEEee--CCEEEEeeCc-eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceee
Q psy18018        218 TLIGHTGGVWSSQMA--GNIIISGSTD-RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELAL  294 (635)
Q Consensus       218 ~~~~h~~~v~~~~~~--~~~l~s~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (635)
                      .+.-...+|..++++  |+.++.|+.. |.+.+|+...+.....                                    
T Consensus       302 ~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------  345 (893)
T KOG0291|consen  302 SLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------  345 (893)
T ss_pred             EeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee------------------------------------
Confidence            998888999999997  9999998875 8999999877654332                                    


Q ss_pred             EEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc
Q psy18018        295 YVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN  374 (635)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~  374 (635)
                                                                +..+.....+++++|||+++++|+.||.|++||..++-
T Consensus       346 ------------------------------------------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf  383 (893)
T KOG0291|consen  346 ------------------------------------------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF  383 (893)
T ss_pred             ------------------------------------------ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence                                                      12233455678899999999999999999999999999


Q ss_pred             eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE----------EEeeCCcEEEEEeCCC-cEEEE
Q psy18018        375 LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR----------ICLFDGVHVVSGSLDT-SIRVW  441 (635)
Q Consensus       375 ~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~l~~~~~d~-~i~~~  441 (635)
                      +..++..|++.|+++.|.  ++.+++.+-||+|+.||+...+.-.++.          ...|.|..+.+|+.|. .|.+|
T Consensus       384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW  463 (893)
T KOG0291|consen  384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW  463 (893)
T ss_pred             EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence            999999999999999997  8899999999999999998765444333          2455688888888886 69999


Q ss_pred             eCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCC-ceeEEecCCCcccccEEEEEe--cCCEEEEEe
Q psy18018        442 EAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQF--NSRFVITSS  516 (635)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  516 (635)
                      ++++|+++..+.||+++|.++++  .++.|++++.|.+|++||+-.. ..+.++.    +...+..++|  +|+.++++.
T Consensus       464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaT  539 (893)
T KOG0291|consen  464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVAT  539 (893)
T ss_pred             EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEE
Confidence            99999999999999999998666  5789999999999999998543 3445555    5667888888  699999999


Q ss_pred             CCCcEEEEECCCCceeeeeccceecCc------ee---EEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe
Q psy18018        517 DDGTVKLWDVKTGEFSTPLMSSFILNP------FY---FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN  587 (635)
Q Consensus       517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~  587 (635)
                      .||.|.+||.+.+.....+.+.....+      ..   ........+.+++|+||.++++|+..+.|+|||+.++-+++.
T Consensus       540 ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk  619 (893)
T KOG0291|consen  540 LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK  619 (893)
T ss_pred             ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence            999999999998766644433221111      11   112235789999999999999999999999999998877766


Q ss_pred             eeeccC-------------------------------------C--------------CCCceEEEEEeCCCCeEEEEcc
Q psy18018        588 LVSLDS-------------------------------------G--------------GSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       588 ~~~~~~-------------------------------------~--------------~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      +..-..                                     .              ...-.|.++.|||.|+-+|+++
T Consensus       620 fqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaat  699 (893)
T KOG0291|consen  620 FQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAAT  699 (893)
T ss_pred             EEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeec
Confidence            651100                                     0              0022589999999999999999


Q ss_pred             CCCeeEeEEEEE
Q psy18018        617 RNGTEETKLLVL  628 (635)
Q Consensus       617 ~dg~~~~~l~~~  628 (635)
                      ..|.   .||.+
T Consensus       700 TEGl---~IYsl  708 (893)
T KOG0291|consen  700 TEGL---LIYSL  708 (893)
T ss_pred             ccce---EEEec
Confidence            9994   45555

>KOG0318|consensus

Probab=100.00  E-value=6.6e-47  Score=336.05  Aligned_cols=510  Identities=17%  Similarity=0.234  Sum_probs=390.4

Q ss_pred             eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCC--CceeeccCcce
Q psy18018          6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKD--PKVLKGHDDHV   83 (635)
Q Consensus         6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~--~~~l~~h~~~v   83 (635)
                      ++++.+.+  .....+.+|...+ +-..||    |.|.|+|+|+..+.++        |||.-..+.  ..+++.-.++|
T Consensus        42 ~ir~i~~~--~~~~iYtEH~~~v-tVAkyS----PsG~yiASGD~sG~vR--------IWdtt~~~hiLKnef~v~aG~I  106 (603)
T KOG0318|consen   42 IIRNIDNP--ASVDIYTEHAHQV-TVAKYS----PSGFYIASGDVSGKVR--------IWDTTQKEHILKNEFQVLAGPI  106 (603)
T ss_pred             EEEECCCc--cceeeecccccee-EEEEeC----CCceEEeecCCcCcEE--------EEeccCcceeeeeeeeeccccc
Confidence            46666533  2356788999988 999999    9999999999754444        599875332  24566777787


Q ss_pred             EEEEEEc--CCEEEEeeCC----CcEEEEECCC--CcE------------------EEEEeeCCCcEEEEeCCCCeEEEE
Q psy18018         84 ITCLQFS--GSRIVSGSDD----NTLKVWSATT--GKC------------------LLVSGSRDATLRVWHIESGECLHV  137 (635)
Q Consensus        84 i~~~~~s--~~~l~s~~~d----~~v~vWd~~~--~~~------------------ll~~~~~dg~i~vwd~~~~~~~~~  137 (635)
                       ..++|+  +++|+..++-    |.+.+||..+  |+.                  .+++|+.|++|.+|+-...+...+
T Consensus       107 -~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s  185 (603)
T KOG0318|consen  107 -KDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS  185 (603)
T ss_pred             -ccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec
Confidence             999999  8888887753    5677787543  111                  199999999999999888888899


Q ss_pred             eeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc---ccceeEEeeec-cCCCEEEEEeCCCcEEEEECC
Q psy18018        138 LVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL---QETEVELSHGY-ALRSRIVSGSDDNTLKVWSAT  211 (635)
Q Consensus       138 l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~  211 (635)
                      ++.|..-|.|+.|  ||.++||++.||.+.+||-.+++.+..+.   .+...++...+ |++.++++++.|.++++||+.
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS  265 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence            9999999999999  99999999999999999999999998877   55555565555 467899999999999999999


Q ss_pred             CCeEEEEEeCCC---CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecc
Q psy18018        212 TGKCLRTLIGHT---GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL  288 (635)
Q Consensus       212 ~~~~~~~~~~h~---~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (635)
                      +.++++++.--.   +....+.|.++.|++.+.+|+|.+++.......                                
T Consensus       266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~--------------------------------  313 (603)
T KOG0318|consen  266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL--------------------------------  313 (603)
T ss_pred             ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh--------------------------------
Confidence            999999886433   344556667999999999999999987653210                                


Q ss_pred             ccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEE
Q psy18018        289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW  368 (635)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~  368 (635)
                                                                    .....+....+++..++++.+|++|+.||.|.-|
T Consensus       314 ----------------------------------------------~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  314 ----------------------------------------------KVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             ----------------------------------------------heecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence                                                          0012234556677889999999999999999999


Q ss_pred             EccCCceEEee-eCCCcceeEEEEeC-CEEEEEeCCCcEEEEEccCCcceeE----------EEEEeeCCcEEEEEeCCC
Q psy18018        369 EAESGNLRHTL-MGHQSLTSGMELRN-NILVSGNADSTVKVWDIVSGTKKLM----------FRICLFDGVHVVSGSLDT  436 (635)
Q Consensus       369 ~~~~~~~~~~~-~~~~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~l~~~~~d~  436 (635)
                      +..++..-+.. ++|...|.+++..+ +.+++.+.|.++++.++........          .....+++..++....++
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            99988765544 78999999999986 8999999999999998754322111          112334555555555444


Q ss_pred             cEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEE
Q psy18018        437 SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT  514 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  514 (635)
                       |.+..-.++ +...-.+......++.++++.+++|+.|+.+++|.+...+...+.. ...|..+|+++++  |+.+||+
T Consensus       428 -iv~l~~~~~-~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~  504 (603)
T KOG0318|consen  428 -IVLLQDQTK-VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAA  504 (603)
T ss_pred             -EEEEecCCc-ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEE
Confidence             444332211 1111123445566777789999999999999999998766433322 2238999999999  7999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCC
Q psy18018        515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG  594 (635)
Q Consensus       515 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  594 (635)
                      +...+.+.+||+.+.+...          .....|...|.+++|+|+..++|||+-|.+|.||+++.....-.+.    .
T Consensus       505 ~Da~rkvv~yd~~s~~~~~----------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----n  570 (603)
T KOG0318|consen  505 GDASRKVVLYDVASREVKT----------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----N  570 (603)
T ss_pred             eccCCcEEEEEcccCceec----------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec----c
Confidence            9999999999999987522          2234589999999999999999999999999999998765544443    5


Q ss_pred             CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        595 GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       595 ~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +|...|.+|.|-. ...|++.+.|..  +|+|.+.
T Consensus       571 AH~~gVn~v~wld-e~tvvSsG~Da~--iK~W~v~  602 (603)
T KOG0318|consen  571 AHLGGVNSVAWLD-ESTVVSSGQDAN--IKVWNVT  602 (603)
T ss_pred             ccccCceeEEEec-CceEEeccCcce--eEEeccc
Confidence            7888899999965 455667777776  7888764

>KOG0306|consensus

Probab=100.00  E-value=8.1e-47  Score=349.68  Aligned_cols=532  Identities=22%  Similarity=0.290  Sum_probs=370.4

Q ss_pred             heeeccceeeeeeecCCCCCCceeeccCcc-eEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeC
Q psy18018         53 ALFMSHRSVEINWRTRPIKDPKVLKGHDDH-VITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHI  129 (635)
Q Consensus        53 ~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~-vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~  129 (635)
                      .++.+....+.+||.++++..+.|.--... .++|+.-+  .-+||.|..||.|++|+..                    
T Consensus        36 ~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~--------------------   95 (888)
T KOG0306|consen   36 AVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLE--------------------   95 (888)
T ss_pred             EEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccC--------------------
Confidence            333334556677999999666555432222 44888887  4445777777777777654                    


Q ss_pred             CCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccC-CCEEEEEeCCCcEE
Q psy18018        130 ESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL-RSRIVSGSDDNTLK  206 (635)
Q Consensus       130 ~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~  206 (635)
                       +.....++.||..+|+++.|  .|.+|+|||.|+.|.+||+-...-+.++.+|...+....|.. ++.+++.+.|+.|+
T Consensus        96 -s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK  174 (888)
T KOG0306|consen   96 -SEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIK  174 (888)
T ss_pred             -CCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEE
Confidence             45667889999999999999  799999999999999999999998999998877666666655 78899999999999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceee
Q psy18018        207 VWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFIS  286 (635)
Q Consensus       207 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (635)
                      +||+.+..+..+.-.|.+.++++++.++.+++++.|+.+++|++....-....    ...........+......+....
T Consensus       175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~----~~~~s~~~~G~~~rqsk~R~i~l  250 (888)
T KOG0306|consen  175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKET----NRYISTKLRGTFIRQSKGREINL  250 (888)
T ss_pred             EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccc----cccceeeccceeeeccCCceeEE
Confidence            99999999999999999999999999999999999999999998322110000    00000000000000000000000


Q ss_pred             ccccceeeEEEe----------ec-CchhhHhhcccccceeE--eecCCcchhh--hhhhhhhhccccccCCCceEEEEe
Q psy18018        287 LLPRELALYVLT----------FL-QPEDLLRAAQTCRSWRF--LAEDNLLWRE--KCLEAATLHRNKKTHVPDLFGFQF  351 (635)
Q Consensus       287 ~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~  351 (635)
                      ..+.......+.          .. +.+.........+..+.  ...++..-..  .......+......+....+++.|
T Consensus       251 ~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~  330 (888)
T KOG0306|consen  251 VTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTP  330 (888)
T ss_pred             eecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEe
Confidence            011111111100          00 00000000000000000  0000000000  000011122222334445566666


Q ss_pred             cCc---EEEEecCCCeEEEEEccCCceE---------EeeeCCCcceeEEEEeC-CEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        352 DGV---HVVSGSLDTSIRVWEAESGNLR---------HTLMGHQSLTSGMELRN-NILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       352 ~~~---~l~~~~~dg~i~v~~~~~~~~~---------~~~~~~~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      .+.   .|+. -.+..+..|.+......         ..+.+|...|.+++++. +.++..+..+.+++|+..+.++..+
T Consensus       331 ~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT  409 (888)
T KOG0306|consen  331 SGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT  409 (888)
T ss_pred             cCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE
Confidence            432   2333 55678888887652211         45779999999999984 4555556678999999999887766


Q ss_pred             EE-------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCC----
Q psy18018        419 FR-------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVS----  485 (635)
Q Consensus       419 ~~-------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~----  485 (635)
                      ..       .+-|.+++++.|...|.+.+||+.+..++.++++|.+.+..++.  ++..+++|+.|.+|++||..-    
T Consensus       410 i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~  489 (888)
T KOG0306|consen  410 ITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV  489 (888)
T ss_pred             eccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence            54       37789999999999999999999999999999999999888776  677999999999999998631    


Q ss_pred             -Ccee--------EEe--------------------------------------cCCCcccccEEEEEe--cCCEEEEEe
Q psy18018        486 -GQCL--------QTL--------------------------------------SGRNKHQSAVTCLQF--NSRFVITSS  516 (635)
Q Consensus       486 -~~~~--------~~~--------------------------------------~~~~~~~~~v~~~~~--~~~~l~~~~  516 (635)
                       +...        +.+                                      -...+|.-||.|+..  |+++++|||
T Consensus       490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS  569 (888)
T KOG0306|consen  490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS  569 (888)
T ss_pred             CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence             0000        000                                      011258889988877  799999999


Q ss_pred             CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCC
Q psy18018        517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS  596 (635)
Q Consensus       517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  596 (635)
                      .|.+|++|-+.-|.+-+.+-.           |...|+++.|-|...++.+++.|+.|+-||-...++++.+     .+|
T Consensus       570 ADKnVKiWGLdFGDCHKS~fA-----------HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-----~~H  633 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGDCHKSFFA-----------HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-----DGH  633 (888)
T ss_pred             CCCceEEeccccchhhhhhhc-----------ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee-----ccc
Confidence            999999999998887665544           7899999999999999999999999999999999999999     689


Q ss_pred             CceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        597 GGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       597 ~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      ...|++++.+|+|.++++++.|..  +++|.-
T Consensus       634 ~~ev~cLav~~~G~~vvs~shD~s--IRlwE~  663 (888)
T KOG0306|consen  634 HSEVWCLAVSPNGSFVVSSSHDKS--IRLWER  663 (888)
T ss_pred             hheeeeeEEcCCCCeEEeccCCce--eEeeec
Confidence            999999999999999999999998  667653

>KOG0318|consensus

Probab=100.00  E-value=1.6e-44  Score=321.01  Aligned_cols=474  Identities=16%  Similarity=0.241  Sum_probs=359.7

Q ss_pred             ceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEE----------------------
Q psy18018         59 RSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL----------------------  114 (635)
Q Consensus        59 ~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l----------------------  114 (635)
                      +..+++-+...........+|..++ +-..||  |.|+|+|...|.|||||....+.+                      
T Consensus        38 Gksv~ir~i~~~~~~~iYtEH~~~v-tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~  116 (603)
T KOG0318|consen   38 GKSVIIRNIDNPASVDIYTEHAHQV-TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSK  116 (603)
T ss_pred             CCEEEEEECCCccceeeecccccee-EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCc
Confidence            4455568888888888899998777 889999  999999999999999998753332                      


Q ss_pred             --EEEeeC-CCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEee
Q psy18018        115 --LVSGSR-DATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH  188 (635)
Q Consensus       115 --l~~~~~-dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  188 (635)
                        .++|.. +...+++-.+++..+..+.||...|+++.|   ..-+++||++|++|.+|+-...+....+..|...+.+.
T Consensus       117 RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V  196 (603)
T KOG0318|consen  117 RIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV  196 (603)
T ss_pred             EEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE
Confidence              455532 223444444578889999999999999999   56789999999999999977777666666666655554


Q ss_pred             -eccCCCEEEEEeCCCcEEEEECCCCeEEEEEe---CCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeecccccc
Q psy18018        189 -GYALRSRIVSGSDDNTLKVWSATTGKCLRTLI---GHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLID  262 (635)
Q Consensus       189 -~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~  262 (635)
                       +.|++.++++++.||.+.+||-.+|+.+..+.   +|.+.|.+++|  ++..++|++.|.++++||+.++.+.......
T Consensus       197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence             45667899999999999999999999999997   89999999999  5889999999999999999886543211100


Q ss_pred             ccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccC
Q psy18018        263 SCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH  342 (635)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (635)
                      ..                                                                            ..
T Consensus       277 ~~----------------------------------------------------------------------------v~  280 (603)
T KOG0318|consen  277 ST----------------------------------------------------------------------------VE  280 (603)
T ss_pred             Cc----------------------------------------------------------------------------hh
Confidence            00                                                                            00


Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE--
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM--  418 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~--  418 (635)
                      . .-+.+-..+..|++.+.+|.|..++......+..+.+|...|+++..+  +.+|++++.||.|.-|+..++.....  
T Consensus       281 d-qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g  359 (603)
T KOG0318|consen  281 D-QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG  359 (603)
T ss_pred             c-eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence            0 011122236789999999999999999999999999999999999997  67999999999999999987754422  


Q ss_pred             -------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee--ec-cCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018        419 -------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT--LM-GHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       419 -------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~-~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~  486 (635)
                             ..+...+...+++.+.|.++++.++..+..-..  ++ +++..  +++.  ++.+++.++.++.+.+-|... 
T Consensus       360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~--~lav~~d~~~avv~~~~~iv~l~~~~~-  436 (603)
T KOG0318|consen  360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK--GLAVLSDGGTAVVACISDIVLLQDQTK-  436 (603)
T ss_pred             ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce--eEEEcCCCCEEEEEecCcEEEEecCCc-
Confidence                   223334447788999999999998865433221  11 22222  4444  445666666665444433332 


Q ss_pred             ceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEE
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI  566 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  566 (635)
                        +..+..  .......++..++..++.|+.|+.|+||.+..+++....         ....|..+|+++++|||+.|||
T Consensus       437 --~~~~~~--~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~---------~~~~h~a~iT~vaySpd~~yla  503 (603)
T KOG0318|consen  437 --VSSIPI--GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA---------KLLEHRAAITDVAYSPDGAYLA  503 (603)
T ss_pred             --ceeecc--ccccceEEEcCCCCEEEEecccceEEEEEecCCccccee---------eeecccCCceEEEECCCCcEEE
Confidence              222221  134444556668999999999999999999977643322         2335899999999999999999


Q ss_pred             EecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018        567 TSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       567 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                      ++...+.+.+||+.+.+.....-    .-|.+.|.+|+|+|+.+++|+|+-|..    +++|+.+.+.
T Consensus       504 ~~Da~rkvv~yd~~s~~~~~~~w----~FHtakI~~~aWsP~n~~vATGSlDt~----Viiysv~kP~  563 (603)
T KOG0318|consen  504 AGDASRKVVLYDVASREVKTNRW----AFHTAKINCVAWSPNNKLVATGSLDTN----VIIYSVKKPA  563 (603)
T ss_pred             EeccCCcEEEEEcccCceeccee----eeeeeeEEEEEeCCCceEEEeccccce----EEEEEccChh
Confidence            99999999999999988733222    358999999999999999999999998    6666666554

>KOG0306|consensus

Probab=100.00  E-value=4.7e-45  Score=338.04  Aligned_cols=465  Identities=24%  Similarity=0.385  Sum_probs=366.8

Q ss_pred             eeecCCC--CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEE
Q psy18018          9 NWRTRPI--KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITC   86 (635)
Q Consensus         9 ~~~~~~~--~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~   86 (635)
                      .|+.+..  ...-.+.+-...+ +|++-+    ||.-+||.|..++        ++.||+..+....-++.||...| ++
T Consensus        47 ~WdlRtge~~~~l~~~~~k~ev-t~l~~~----~d~l~lAVGYaDG--------sVqif~~~s~~~~~tfngHK~AV-t~  112 (888)
T KOG0306|consen   47 IWDLRTGEIEKKLILLKKKAEV-TCLRSS----DDILLLAVGYADG--------SVQIFSLESEEILITFNGHKAAV-TT  112 (888)
T ss_pred             EEeeecchhhhhhhhhcccceE-EEeecc----CCcceEEEEecCc--------eEEeeccCCCceeeeecccccce-EE
Confidence            4665655  2333334445566 999999    8999999998754        45579999999999999999998 99


Q ss_pred             EEEc--CCEEEEeeCCCcEEEEECCC---------------------CcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCc
Q psy18018         87 LQFS--GSRIVSGSDDNTLKVWSATT---------------------GKCLLVSGSRDATLRVWHIESGECLHVLVGHLA  143 (635)
Q Consensus        87 ~~~s--~~~l~s~~~d~~v~vWd~~~---------------------~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~  143 (635)
                      +.|+  |.+|||||.|+.|.+||+-.                     ++.++++.+.|+.|++||+++..+..+.-.|.+
T Consensus       113 l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~  192 (888)
T KOG0306|consen  113 LKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRG  192 (888)
T ss_pred             EEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccc
Confidence            9999  99999999999999999853                     344599999999999999999999999999999


Q ss_pred             ceEEEEecCCEEEEEeCCCeEEEEeCCCc------------------------cceeeccccc-----------------
Q psy18018        144 AVRCVQYDGKLVVSGAYDYMVKIWNPDTE------------------------ECLHAELQET-----------------  182 (635)
Q Consensus       144 ~v~~l~~~~~~l~s~~~dg~v~iwd~~~~------------------------~~~~~~~~~~-----------------  182 (635)
                      .|.+++++++.+++++.|+.+++|++...                        +.+.......                 
T Consensus       193 Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~fr  272 (888)
T KOG0306|consen  193 EIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFR  272 (888)
T ss_pred             eEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhhee
Confidence            99999998899999999999999998210                        0000000000                 


Q ss_pred             -------------------------------------------------eeEEeeeccC--CCEEEEEeCCCcEEEEECC
Q psy18018        183 -------------------------------------------------EVELSHGYAL--RSRIVSGSDDNTLKVWSAT  211 (635)
Q Consensus       183 -------------------------------------------------~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~  211 (635)
                                                                       .+......+.  ....+....++++..+.++
T Consensus       273 I~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~  352 (888)
T KOG0306|consen  273 IRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLE  352 (888)
T ss_pred             ecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEec
Confidence                                                             0000000000  0112222556677777765


Q ss_pred             CCeEE---------EEEeCCCCCeEEEEeeC-CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018        212 TGKCL---------RTLIGHTGGVWSSQMAG-NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ  281 (635)
Q Consensus       212 ~~~~~---------~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (635)
                      .....         -++.||...|.+++++. +.++..+..+++++|+..+.+...                        
T Consensus       353 ~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciR------------------------  408 (888)
T KOG0306|consen  353 NSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIR------------------------  408 (888)
T ss_pred             cCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeE------------------------
Confidence            41111         34578999999999964 444444557889999877543211                        


Q ss_pred             cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC
Q psy18018        282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL  361 (635)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  361 (635)
                                                                              .......-+..|-|.++++++|..
T Consensus       409 --------------------------------------------------------Ti~~~y~l~~~Fvpgd~~Iv~G~k  432 (888)
T KOG0306|consen  409 --------------------------------------------------------TITCGYILASKFVPGDRYIVLGTK  432 (888)
T ss_pred             --------------------------------------------------------EeccccEEEEEecCCCceEEEecc
Confidence                                                                    001112233458889999999999


Q ss_pred             CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCC-----cce----------------eE
Q psy18018        362 DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG-----TKK----------------LM  418 (635)
Q Consensus       362 dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-----~~~----------------~~  418 (635)
                      .|.+.+||+.+...+.+.+.|.+.+..++..  +..+++++.|.+|++||..--     ...                ..
T Consensus       433 ~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL  512 (888)
T KOG0306|consen  433 NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL  512 (888)
T ss_pred             CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence            9999999999999999999999999999986  669999999999999997421     111                11


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  496 (635)
                      ...+||||++|+++--|.++++|-+++.+..-.+-||.-+|.||..  +++++++|+.|..|++|-+.-|.+-+.+..  
T Consensus       513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA--  590 (888)
T KOG0306|consen  513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA--  590 (888)
T ss_pred             EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc--
Confidence            1237999999999999999999999999999999999999999876  677999999999999999999999999987  


Q ss_pred             cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                       |+..|.++.|  ...++++++.|+.|+-||-...+.+..+.+           |...|.|++.+|+|.++++++.|.+|
T Consensus       591 -HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-----------H~~ev~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  591 -HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-----------HHSEVWCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             -ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-----------chheeeeeEEcCCCCeEEeccCCcee
Confidence             9999999999  577899999999999999999998888877           68899999999999999999999999


Q ss_pred             EEEeCCC
Q psy18018        575 KLWDVKT  581 (635)
Q Consensus       575 ~iwd~~~  581 (635)
                      ++|.-..
T Consensus       659 RlwE~td  665 (888)
T KOG0306|consen  659 RLWERTD  665 (888)
T ss_pred             EeeeccC
Confidence            9998654

>KOG1408|consensus

Probab=100.00  E-value=1.4e-44  Score=332.78  Aligned_cols=524  Identities=17%  Similarity=0.242  Sum_probs=371.6

Q ss_pred             eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEE
Q psy18018          7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITC   86 (635)
Q Consensus         7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~   86 (635)
                      ...|+++.+++...+-.|..++ +|||||    |+|+|+|+|+.+      ....+.+|++.....+.+|..|.-.+ +|
T Consensus        60 VVlfn~~~~tQ~hlvnssRk~~-t~vAfS----~~GryvatGEcG------~~pa~kVw~la~h~vVAEfvdHKY~v-tc  127 (1080)
T KOG1408|consen   60 VVLFNVDSCTQSHLVNSSRKPL-TCVAFS----QNGRYVATGECG------RTPASKVWSLAFHGVVAEFVDHKYNV-TC  127 (1080)
T ss_pred             EEEEcccccchhheecccCcce-eEEEEc----CCCcEEEecccC------CCccceeeeeccccchhhhhhccccc-ee
Confidence            4567777777777888899988 999999    999999999954      46667789999999999999999998 99


Q ss_pred             EEEc--CCEEEEeeC--CCcEEEEECCCCcEE----------EEEeeC---------CCcEEEEeCCCCeEEE-------
Q psy18018         87 LQFS--GSRIVSGSD--DNTLKVWSATTGKCL----------LVSGSR---------DATLRVWHIESGECLH-------  136 (635)
Q Consensus        87 ~~~s--~~~l~s~~~--d~~v~vWd~~~~~~l----------l~~~~~---------dg~i~vwd~~~~~~~~-------  136 (635)
                      ++|+  ++|+++.|.  |-.|.+||+......          .++-++         +..|++|.++.++...       
T Consensus       128 vaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~g  207 (1080)
T KOG1408|consen  128 VAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPG  207 (1080)
T ss_pred             eeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccc
Confidence            9999  899998875  667889987643321          222333         4468999887554110       


Q ss_pred             ------------------------------EeeCC-----------------CcceEEEEecCCEEEEEeCCCeEEEEeC
Q psy18018        137 ------------------------------VLVGH-----------------LAAVRCVQYDGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus       137 ------------------------------~l~~h-----------------~~~v~~l~~~~~~l~s~~~dg~v~iwd~  169 (635)
                                                    +-.||                 +..-.||+.+.++++.|+.+|+|++++.
T Consensus       208 Rs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp  287 (1080)
T KOG1408|consen  208 RSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNP  287 (1080)
T ss_pred             hhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCc
Confidence                                          00011                 1122466668899999999999999998


Q ss_pred             CCccceeecccc-------------------------ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE---EEEeC
Q psy18018        170 DTEECLHAELQE-------------------------TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL---RTLIG  221 (635)
Q Consensus       170 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~  221 (635)
                      .+...+.++...                         ...+.+.+.+..+.|.+...|..+++||++.-..+   ..+.-
T Consensus       288 ~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly  367 (1080)
T KOG1408|consen  288 ETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY  367 (1080)
T ss_pred             chhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee
Confidence            875433322211                         11122233335678999999999999999874433   33456


Q ss_pred             CCCCeEEEEe-------------eCCEEEEeeCceeEEEecccceeee--ccccccccCccceeeeeeeeccccccceee
Q psy18018        222 HTGGVWSSQM-------------AGNIIISGSTDRTLKGWSNAERILA--IGQLIDSCEPTQIRHMMQLIEPQFQRDFIS  286 (635)
Q Consensus       222 h~~~v~~~~~-------------~~~~l~s~~~dg~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (635)
                      |...||.+..             -..-++|++.|++||+|++......  ..+.+.                        
T Consensus       368 HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil------------------------  423 (1080)
T KOG1408|consen  368 HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL------------------------  423 (1080)
T ss_pred             ccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc------------------------
Confidence            9999988765             1457999999999999998762110  000000                        


Q ss_pred             ccccceeeEEEeecC-chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018        287 LLPRELALYVLTFLQ-PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI  365 (635)
Q Consensus       287 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  365 (635)
                          ...+..+.+.. ..+++........                ..............++++++|+|++|++|..-|.+
T Consensus       424 ----s~~l~ki~y~d~~~q~~~d~~~~~f----------------dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl  483 (1080)
T KOG1408|consen  424 ----SANLSKIPYEDSTQQIMHDASAGIF----------------DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL  483 (1080)
T ss_pred             ----hhhhhcCccccCchhhhhhccCCcc----------------cccchhhcCcccceEEEEECCCcceecccCccCce
Confidence                00000001111 1111111100000                00000111222456778999999999999999999


Q ss_pred             EEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        366 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       366 ~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                      ++|++..-+....+..|+..|.++.++...+                            ..+.|++++.|+-|++||...
T Consensus       484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~----------------------------~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  484 RVYDLQELEYTCFMEAHESEILCLEYSFPVL----------------------------TNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             EEEEehhhhhhhheecccceeEEEeecCchh----------------------------hhHhhhhccCCceEEEEeccc
Confidence            9999999999999999999999999972110                            123466666666777777653


Q ss_pred             -CceeeeeccCCccEEEEEec--C--CEEEEEeCCCcEEEEECCCCceeEEecC--CCcccccEEEEEec--CCEEEEEe
Q psy18018        446 -GNLRHTLMGHQSLTSGMELR--N--NILVSGNADSTVKVWDIVSGQCLQTLSG--RNKHQSAVTCLQFN--SRFVITSS  516 (635)
Q Consensus       446 -~~~~~~~~~~~~~v~~~~~~--~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~~~~  516 (635)
                       -.+++++.+|.+.|+++.|-  +  ..+++++.|+.|.+--.+...-...+..  .......+..++.+  .+++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence             46788999999999999983  3  4889999999887544332111122221  11134567777774  78999999


Q ss_pred             CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCC
Q psy18018        517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS  596 (635)
Q Consensus       517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  596 (635)
                      .|..|+||++++++..+.+++..        .|.+....+...|.|-|||+.+.|.++.++|..+||++.++     .+|
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~--------~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-----~GH  682 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSR--------DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-----TGH  682 (1080)
T ss_pred             cccceEEEeccccceeeeecccc--------cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-----cCc
Confidence            99999999999999999988742        25667788889999999999999999999999999999999     689


Q ss_pred             CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        597 GGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       597 ~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ...|+.|.|.+|.+.|++.+.||.  +.+|.+.
T Consensus       683 sE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp  713 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDCKHLISVSGDGC--IFVWKLP  713 (1080)
T ss_pred             chheeeeeecccchhheeecCCce--EEEEECc
Confidence            999999999999999999999998  5555543

>KOG0291|consensus

Probab=100.00  E-value=9.7e-41  Score=309.69  Aligned_cols=498  Identities=19%  Similarity=0.242  Sum_probs=364.8

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      ..+.|+    |||.-+.+-.         ++-+.++|.+..+-...--.+...+ ++++.|  |.+|++....|...+-+
T Consensus        18 Gnl~ft----~dG~sviSPv---------GNrvsv~dLknN~S~Tl~~e~~~NI-~~ialSp~g~lllavdE~g~~~lvs   83 (893)
T KOG0291|consen   18 GNLVFT----KDGNSVISPV---------GNRVSVFDLKNNKSYTLPLETRYNI-TRIALSPDGTLLLAVDERGRALLVS   83 (893)
T ss_pred             CcEEEC----CCCCEEEecc---------CCEEEEEEccCCcceeEEeecCCce-EEEEeCCCceEEEEEcCCCcEEEEe
Confidence            457888    7777666654         4445569988755443323455556 999999  77887777776655544


Q ss_pred             CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccc--------eee
Q psy18018        108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEEC--------LHA  177 (635)
Q Consensus       108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~--------~~~  177 (635)
                      ..                     ....++.+ ....+|.|+.|  +|+++|.+. .+.+.||.......        .++
T Consensus        84 ~~---------------------~r~Vlh~f-~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~  140 (893)
T KOG0291|consen   84 LL---------------------SRSVLHRF-NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRT  140 (893)
T ss_pred             cc---------------------cceeeEEE-eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeee
Confidence            33                     33334444 34678999999  777777665 57899998765332        223


Q ss_pred             ccccceeEEeeec-cCCCEEEEEeCCCcEEEEECCCCeE--EEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccc
Q psy18018        178 ELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSATTGKC--LRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       178 ~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~  252 (635)
                      +.++..-.....| .+.+.+++|+.|-++++|+++..+.  ...+.+|.+.|.+..|  +...+++.+.||.+.+|....
T Consensus       141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~  220 (893)
T KOG0291|consen  141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDL  220 (893)
T ss_pred             ecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecC
Confidence            3444444444444 4567788889999999999987666  5667899999999888  477899999999999998775


Q ss_pred             eeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhh
Q psy18018        253 RILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEA  332 (635)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (635)
                      ......+-....+.              ..+....-+.+...                ....|...              
T Consensus       221 ~P~~~~~~~kd~eg--------------~~d~~~~~~~Eek~----------------~~~~~~k~--------------  256 (893)
T KOG0291|consen  221 RPPELDKAEKDEEG--------------SDDEEMDEDGEEKT----------------HKIFWYKT--------------  256 (893)
T ss_pred             CCcccccccccccc--------------cccccccccchhhh----------------cceEEEEE--------------
Confidence            42111100000000              00000000000000                00000000              


Q ss_pred             hhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC-CcEEEEE
Q psy18018        333 ATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD-STVKVWD  409 (635)
Q Consensus       333 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d-g~i~iwd  409 (635)
                      .............+.+|++.-+.|++|-..|...+|.+....+++.+.-...+|..++++  ++.++.++.. |.+.+|+
T Consensus       257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence            000011112445566788888999999999999999999999999999888999999998  8999988765 8999999


Q ss_pred             ccCCcceeEE---------EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcE
Q psy18018        410 IVSGTKKLMF---------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTV  478 (635)
Q Consensus       410 ~~~~~~~~~~---------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i  478 (635)
                      ..+...+...         ..++|||+++++|+.||.|++||..++-+..++..|++.|+++.|  .++.+++.+-||+|
T Consensus       337 WqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  337 WQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             eeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence            8876554433         348999999999999999999999999999999999999999998  58899999999999


Q ss_pred             EEEECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCC-cEEEEECCCCceeeeeccceecCceeEEeccCceec
Q psy18018        479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDG-TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC  555 (635)
Q Consensus       479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  555 (635)
                      +.||+...+..+++..+.  ...-.|++.|  |..+..|+.|. .|.+|++++|+++..+.+           |.++|.+
T Consensus       417 RAwDlkRYrNfRTft~P~--p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-----------HEgPVs~  483 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPE--PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-----------HEGPVSG  483 (893)
T ss_pred             EeeeecccceeeeecCCC--ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-----------CCCccee
Confidence            999999999999998643  3345566665  88888888876 599999999999988877           7999999


Q ss_pred             ccccCCCeEEEEecCCCeEEEEeCCCC-ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        556 PHLQFNSRFVITSSDDGTVKLWDVKTG-EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       556 ~~~s~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ++|+|++..|++++.|.+|++||+-.. ....++      .+...+..++|+|||+-||+++-||.    |-.||.+
T Consensus       484 l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl------~i~sdvl~vsfrPdG~elaVaTldgq----Itf~d~~  550 (893)
T KOG0291|consen  484 LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL------EIRSDVLAVSFRPDGKELAVATLDGQ----ITFFDIK  550 (893)
T ss_pred             eEEccccCeEEeccccceEEEEEeeccCceeeeE------eeccceeEEEEcCCCCeEEEEEecce----EEEEEhh
Confidence            999999999999999999999998554 233344      45678999999999999999999998    4555544

>KOG1539|consensus

Probab=100.00  E-value=1.8e-40  Score=311.44  Aligned_cols=489  Identities=19%  Similarity=0.259  Sum_probs=381.7

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCC-CceeeccCcceEEEEEEcCCEEEEeeCCC
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKD-PKVLKGHDDHVITCLQFSGSRIVSGSDDN  101 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~-~~~l~~h~~~vi~~~~~s~~~l~s~~~d~  101 (635)
                      -+.+.| +|||=.    .+--|.|++..           +.+|  ..++. ...+.+|...| .-+..=|.+++++..++
T Consensus        74 ~lp~~I-~alas~----~~~vy~A~g~~-----------i~~~--~rgk~i~~~~~~~~a~v-~~l~~fGe~lia~d~~~  134 (910)
T KOG1539|consen   74 PLPDKI-TALASD----KDYVYVASGNK-----------IYAY--ARGKHIRHTTLLHGAKV-HLLLPFGEHLIAVDISN  134 (910)
T ss_pred             CCCCce-EEEEec----CceEEEecCcE-----------EEEE--EccceEEEEeccccceE-EEEeeecceEEEEEccC
Confidence            566776 888877    55555555543           2223  33322 34566777555 44444499999999999


Q ss_pred             cEEEEECCCC-cE----E----------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cC
Q psy18018        102 TLKVWSATTG-KC----L----------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DG  152 (635)
Q Consensus       102 ~v~vWd~~~~-~~----l----------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~  152 (635)
                      .+.+|+..++ +.    +                      ++.|+.+|.+.+|++++++.+++++++...|+++.-  --
T Consensus       135 ~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL  214 (910)
T KOG1539|consen  135 ILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL  214 (910)
T ss_pred             cEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc
Confidence            9999999884 22    1                      899999999999999999999999999999999987  45


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc-C-CCEEEEEeCCCcEEEEECCCCeEEEEEe-CCCCCeEEE
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA-L-RSRIVSGSDDNTLKVWSATTGKCLRTLI-GHTGGVWSS  229 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~  229 (635)
                      ..+|.|..+|+|.++|+..++.+..+......+..+.|. + ...+++|+..|.+.+||++..+.+..+. .|.+.|...
T Consensus       215 DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~  294 (910)
T KOG1539|consen  215 DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGA  294 (910)
T ss_pred             eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccc
Confidence            689999999999999999999999999985555566665 3 3578888888999999999988887665 798999888


Q ss_pred             Ee--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHh
Q psy18018        230 QM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR  307 (635)
Q Consensus       230 ~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (635)
                      .|  ....+++++.|+.+++|-.+++.-..                                                  
T Consensus       295 ~fl~~epVl~ta~~DnSlk~~vfD~~dg~p--------------------------------------------------  324 (910)
T KOG1539|consen  295 TFLPGEPVLVTAGADNSLKVWVFDSGDGVP--------------------------------------------------  324 (910)
T ss_pred             eecCCCceEeeccCCCceeEEEeeCCCCcc--------------------------------------------------
Confidence            88  36789999999999999655321100                                                  


Q ss_pred             hcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE-ecCcEEEEecCCCeEEEEEccCCceE----E-----
Q psy18018        308 AAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ-FDGVHVVSGSLDTSIRVWEAESGNLR----H-----  377 (635)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~dg~i~v~~~~~~~~~----~-----  377 (635)
                                              ...-.+..+..++.++.|. .+|.++.+++.|++.+.+++.....-    +     
T Consensus       325 ------------------------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~  380 (910)
T KOG1539|consen  325 ------------------------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK  380 (910)
T ss_pred             ------------------------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence                                    0000123334455556665 58889999999999998886432110    0     


Q ss_pred             ---------eeeCCCcceeEEEEe-------CCEEEEEeCCCcEEEEEccCCcc---------------eeEEEEEeeCC
Q psy18018        378 ---------TLMGHQSLTSGMELR-------NNILVSGNADSTVKVWDIVSGTK---------------KLMFRICLFDG  426 (635)
Q Consensus       378 ---------~~~~~~~~v~~l~~~-------~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~~  426 (635)
                               .....-.+|..+++.       .+.++..-.+...+.|+..+...               .......++.|
T Consensus       381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG  460 (910)
T KOG1539|consen  381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG  460 (910)
T ss_pred             ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence                     001122367777775       34566666778899999876532               12233468899


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeee---ccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      ++.+.|...|.|-+|++.+|-....+   ..|..+|++++.|+  +.+++++.+|.+++||......+..+.    -...
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~----l~~~  536 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR----LGSS  536 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec----cCCC
Confidence            99999999999999999999888888   58999999999974  589999999999999999988777776    3455


Q ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        502 VTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       502 v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      ++++..  ....++.+..|-.|+++|..+.+..+.+.+           |...|+.++|||||++|++++.|++|++||+
T Consensus       537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-----------h~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-----------HGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------cccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            666666  477899999999999999999998888876           7999999999999999999999999999999


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      .++.++-.+      ..+.+.++|.|||+|.+||+...|.. .+.+|
T Consensus       606 pt~~lID~~------~vd~~~~sls~SPngD~LAT~Hvd~~-gIylW  645 (910)
T KOG1539|consen  606 PTGTLIDGL------LVDSPCTSLSFSPNGDFLATVHVDQN-GIYLW  645 (910)
T ss_pred             cCcceeeeE------ecCCcceeeEECCCCCEEEEEEecCc-eEEEE
Confidence            999999888      45788999999999999999999863 35555

>KOG0272|consensus

Probab=100.00  E-value=7.2e-41  Score=289.71  Aligned_cols=276  Identities=25%  Similarity=0.381  Sum_probs=250.8

Q ss_pred             ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018        182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI  261 (635)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  261 (635)
                      .++..+.+..+++.|++|+.+|.+++|+..+...+.+|.+|...|.++.|                              
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~f------------------------------  225 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVF------------------------------  225 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEE------------------------------
Confidence            44555666677899999999999999999999999999999999988774                              


Q ss_pred             cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018        262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT  341 (635)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (635)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (459)
T KOG0272|consen  226 --------------------------------------------------------------------------------  225 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCceEEEEec--CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        342 HVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       342 ~~~~~~~~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                              +|.  +..+++++.||.+++|++.+..++..+.+|...|..++|+                           
T Consensus       226 --------hP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH---------------------------  270 (459)
T KOG0272|consen  226 --------HPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH---------------------------  270 (459)
T ss_pred             --------ccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec---------------------------
Confidence                    332  4568899999999999999889999999999999999986                           


Q ss_pred             EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018        420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                          |+|++|++++.|.+-++||++++..+....||...|.+++|  +|.++++|+.|..-+|||+++++++..+.+   
T Consensus       271 ----PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g---  343 (459)
T KOG0272|consen  271 ----PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG---  343 (459)
T ss_pred             ----CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc---
Confidence                78889999999999999999999999999999999999998  677999999999999999999999999998   


Q ss_pred             ccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeE
Q psy18018        498 HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTV  574 (635)
Q Consensus       498 ~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v  574 (635)
                      |..+|.+++|  +|..|||||.|++++|||++....+..+..           |..-|+.+.|+| .|.+|+|++.|+++
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-----------H~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-----------HSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-----------ccchhhheEecccCCeEEEEcccCcce
Confidence            9999999999  699999999999999999998887666554           799999999999 78999999999999


Q ss_pred             EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      +||...+..+++++     .+|.+.|.++..++|+.++++++-|.+  +|+|.
T Consensus       413 kiWs~~~~~~~ksL-----aGHe~kV~s~Dis~d~~~i~t~s~DRT--~KLW~  458 (459)
T KOG0272|consen  413 KIWSTRTWSPLKSL-----AGHEGKVISLDISPDSQAIATSSFDRT--IKLWR  458 (459)
T ss_pred             eeecCCCcccchhh-----cCCccceEEEEeccCCceEEEeccCce--eeecc
Confidence            99999999999999     699999999999999999999999998  78873

>KOG0286|consensus

Probab=100.00  E-value=3.7e-39  Score=265.64  Aligned_cols=282  Identities=26%  Similarity=0.415  Sum_probs=243.1

Q ss_pred             EEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccccee
Q psy18018        216 LRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELA  293 (635)
Q Consensus       216 ~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (635)
                      .++++||.+.|.++.|  +.+.+++++.||.+.+||.-+......                                   
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha-----------------------------------   92 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA-----------------------------------   92 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE-----------------------------------
Confidence            3789999999999999  588999999999999999654311000                                   


Q ss_pred             eEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC
Q psy18018        294 LYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG  373 (635)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  373 (635)
                                                                 .+....-....+|+|.|+++|+|+.|+...||++.+.
T Consensus        93 -------------------------------------------ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~  129 (343)
T KOG0286|consen   93 -------------------------------------------IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR  129 (343)
T ss_pred             -------------------------------------------EecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence                                                       0001112234679999999999999999999999855


Q ss_pred             ------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc
Q psy18018        374 ------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN  447 (635)
Q Consensus       374 ------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  447 (635)
                            +..+.+.+|++.+.+..|-                                ++.+|++++.|.++.+||+++++
T Consensus       130 d~~g~~~v~r~l~gHtgylScC~f~--------------------------------dD~~ilT~SGD~TCalWDie~g~  177 (343)
T KOG0286|consen  130 DAEGNVRVSRELAGHTGYLSCCRFL--------------------------------DDNHILTGSGDMTCALWDIETGQ  177 (343)
T ss_pred             cccccceeeeeecCccceeEEEEEc--------------------------------CCCceEecCCCceEEEEEcccce
Confidence                  3456789999988888773                                45567788888889999999999


Q ss_pred             eeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEE
Q psy18018        448 LRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVK  522 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~  522 (635)
                      ....+.+|.+.|.++++.   ++.+++|+-|+..++||++.+.+.+.|.+   |...|.++.|  +|.-+++|++|++.|
T Consensus       178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcR  254 (343)
T KOG0286|consen  178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCR  254 (343)
T ss_pred             EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc---cccccceEEEccCCCeeeecCCCceeE
Confidence            999999999999998874   57999999999999999999999999999   9999999999  899999999999999


Q ss_pred             EEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEE
Q psy18018        523 LWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWR  602 (635)
Q Consensus       523 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~  602 (635)
                      +||++..+.+..+....         -..+|++++||..|++|+.|..|.++.+||.-.++.+..+     .+|.++|.+
T Consensus       255 lyDlRaD~~~a~ys~~~---------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-----~GHeNRvSc  320 (343)
T KOG0286|consen  255 LYDLRADQELAVYSHDS---------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-----AGHENRVSC  320 (343)
T ss_pred             EEeecCCcEEeeeccCc---------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-----eccCCeeEE
Confidence            99999998887776421         2458999999999999999999999999999999999999     699999999


Q ss_pred             EEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        603 IRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       603 l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      |..+|||..|++|+.|.+  +|||
T Consensus       321 l~~s~DG~av~TgSWDs~--lriW  342 (343)
T KOG0286|consen  321 LGVSPDGMAVATGSWDST--LRIW  342 (343)
T ss_pred             EEECCCCcEEEecchhHh--eeec
Confidence            999999999999999998  6777

>KOG2106|consensus

Probab=100.00  E-value=1.2e-36  Score=269.63  Aligned_cols=504  Identities=17%  Similarity=0.248  Sum_probs=360.9

Q ss_pred             ceeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceE
Q psy18018          5 SVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVI   84 (635)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi   84 (635)
                      ++.|||+.+.   |+++.||++.| .|++++    ||...+|+|.....--...++.+++||..+...++.+..-+..| 
T Consensus        87 ~Vl~n~ee~~---Qr~y~GH~ddi-kc~~vH----Pdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV-  157 (626)
T KOG2106|consen   87 GVLYNWEERS---QRHYLGHNDDI-KCMAVH----PDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGV-  157 (626)
T ss_pred             EEEEeehhhh---cccccCCCCce-EEEeec----CCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccc-
Confidence            5789997554   49999999999 899999    88999998765432212345677789999999999888655556 


Q ss_pred             EEEEEc----CCEEEEee--CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEE
Q psy18018         85 TCLQFS----GSRIVSGS--DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLV  155 (635)
Q Consensus        85 ~~~~~s----~~~l~s~~--~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l  155 (635)
                      +|++||    |.+|+...  .+..+.|||++                     .+......+.-+..|....|   |.+.+
T Consensus       158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq---------------------k~~~~~~vk~sne~v~~a~FHPtd~nli  216 (626)
T KOG2106|consen  158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ---------------------KKAKLGPVKTSNEVVFLATFHPTDPNLI  216 (626)
T ss_pred             eeeeecccCCCceEEEecCCCccccchhhch---------------------hhhccCcceeccceEEEEEeccCCCcEE
Confidence            999999    77776653  33445555554                     44444555556677888888   66777


Q ss_pred             EEEeCCCeEEEEeCCCccceee---cc-ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe
Q psy18018        156 VSGAYDYMVKIWNPDTEECLHA---EL-QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM  231 (635)
Q Consensus       156 ~s~~~dg~v~iwd~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  231 (635)
                      ++++ .|.+.+|+++.+...++   +. .....+.+..|..++-+++|.++|.|.||+..+.+..+....|.+.|.+++.
T Consensus       217 it~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~  295 (626)
T KOG2106|consen  217 ITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCM  295 (626)
T ss_pred             EEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEE
Confidence            7766 58899999998865543   11 2235677888999999999999999999999988888887799999999998


Q ss_pred             e-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        232 A-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       232 ~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                      - ...|++|+.|+.|..||-.-+...-.++                                                  
T Consensus       296 lr~GtllSGgKDRki~~Wd~~y~k~r~~el--------------------------------------------------  325 (626)
T KOG2106|consen  296 LRDGTLLSGGKDRKIILWDDNYRKLRETEL--------------------------------------------------  325 (626)
T ss_pred             ecCccEeecCccceEEeccccccccccccC--------------------------------------------------
Confidence            4 5577779999999999932211100000                                                  


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                   +.....+-.+.+.+.-+++|+..+.|..=.++++- .....+|......++
T Consensus       326 -----------------------------Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla  375 (626)
T KOG2106|consen  326 -----------------------------PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLA  375 (626)
T ss_pred             -----------------------------chhcCCeeEEecCCCcEEEeeccceEEEeeecCCc-eEEEEecccceeeEE
Confidence                                         00111111233333337777777666554555443 345668888888888


Q ss_pred             Ee--CCEEEEEeCCCcEEEEEccCCcceeEE--------EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE
Q psy18018        391 LR--NNILVSGNADSTVKVWDIVSGTKKLMF--------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS  460 (635)
Q Consensus       391 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~  460 (635)
                      ..  .+.+++++.|+.+++|+  ..+.....        ..+.|.| .++.|+..|...+.|.++...+..-.. ..+++
T Consensus       376 ~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls  451 (626)
T KOG2106|consen  376 THPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS  451 (626)
T ss_pred             cCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence            76  67999999999999999  33322222        2367788 999999999999999999666655554 77788


Q ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018        461 GMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       461 ~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  536 (635)
                      ++.+  +|.+||.|+.|+.|+||.+..........+.. +..+|+.+.|  |++++.+-+.|-.|..|.-..-+.....+
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k  530 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK  530 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence            8776  67899999999999999997654443333222 3388999999  79999999999999999443333222221


Q ss_pred             cceecC-------ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCC
Q psy18018        537 SSFILN-------PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETK  609 (635)
Q Consensus       537 ~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  609 (635)
                      .-....       .+....+...|..++-+.+.+++|+|.+.|+|++|...=-+....+  ++..+|.+.|++++|..+.
T Consensus       531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~~ghs~~vt~V~Fl~~d  608 (626)
T KOG2106|consen  531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEYGGHSSHVTNVAFLCKD  608 (626)
T ss_pred             ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc--eeeccccceeEEEEEeeCC
Confidence            110000       1112346667888999999999999999999999987644333222  2236899999999999999


Q ss_pred             eEEEEccCCCeeEeEEEEEee
Q psy18018        610 LVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       610 ~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      ..|++.+.|..    +..|++
T Consensus       609 ~~li~tg~D~S----i~qW~l  625 (626)
T KOG2106|consen  609 SHLISTGKDTS----IMQWRL  625 (626)
T ss_pred             ceEEecCCCce----EEEEEe
Confidence            98888888876    555543

>KOG0272|consensus

Probab=100.00  E-value=1.1e-40  Score=288.68  Aligned_cols=276  Identities=26%  Similarity=0.416  Sum_probs=252.5

Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC---CEEEEEeCCCcEEEEECCCCe
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR---SRIVSGSDDNTLKVWSATTGK  214 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~  214 (635)
                      +-+.||..+.|  |++.|+|||.+|.+++|+..+...+..+.+|......+.|.|.   ..+++++.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            66789999999  9999999999999999999999999999998777666666554   489999999999999999999


Q ss_pred             EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceee
Q psy18018        215 CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELAL  294 (635)
Q Consensus       215 ~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (635)
                      ++..+.+|...|..++                                                                
T Consensus       253 ~l~~l~gH~~RVs~Va----------------------------------------------------------------  268 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVA----------------------------------------------------------------  268 (459)
T ss_pred             chhhhhcchhhheeee----------------------------------------------------------------
Confidence            9999999988776655                                                                


Q ss_pred             EEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc
Q psy18018        295 YVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN  374 (635)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~  374 (635)
                                                                            |+|+|++|++++.|.+-++||+.++.
T Consensus       269 ------------------------------------------------------fHPsG~~L~TasfD~tWRlWD~~tk~  294 (459)
T KOG0272|consen  269 ------------------------------------------------------FHPSGKFLGTASFDSTWRLWDLETKS  294 (459)
T ss_pred             ------------------------------------------------------ecCCCceeeecccccchhhcccccch
Confidence                                                                  88999999999999999999999999


Q ss_pred             eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc
Q psy18018        375 LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  454 (635)
Q Consensus       375 ~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  454 (635)
                      .+....+|...|.+++|.                               +||..+++|+.|..-++||++++..+..+.+
T Consensus       295 ElL~QEGHs~~v~~iaf~-------------------------------~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  295 ELLLQEGHSKGVFSIAFQ-------------------------------PDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             hhHhhcccccccceeEec-------------------------------CCCceeeccCccchhheeecccCcEEEEecc
Confidence            999999999999999987                               6777888888899999999999999999999


Q ss_pred             CCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCC
Q psy18018        455 HQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTG  529 (635)
Q Consensus       455 ~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~  529 (635)
                      |..+|.+++|+++  .+++|+.|++++|||++..+.+..+..   |..-|+.+.|.   |.+|+|++.|+++++|.-++.
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA---H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA---HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc---ccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            9999999999655  899999999999999999888888887   99999999994   899999999999999999999


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      ++++.+.+           |...|.++.++||+.++++++.|.++++|.
T Consensus       421 ~~~ksLaG-----------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 SPLKSLAG-----------HEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccchhhcC-----------CccceEEEEeccCCceEEEeccCceeeecc
Confidence            99888877           799999999999999999999999999995

>KOG1408|consensus

Probab=100.00  E-value=5.9e-37  Score=282.84  Aligned_cols=501  Identities=18%  Similarity=0.243  Sum_probs=350.7

Q ss_pred             CCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEee--CCCcEEEEECCCCcEEEE
Q psy18018         41 CESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGS--DDNTLKVWSATTGKCLLV  116 (635)
Q Consensus        41 ~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~--~d~~v~vWd~~~~~~ll~  116 (635)
                      ++.-||+..-.+.+.+-.+.+++++|+...++-+.+..|.... +|+|||  |+|+|+|-  ..-.++||++        
T Consensus        39 ~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~-t~vAfS~~GryvatGEcG~~pa~kVw~l--------  109 (1080)
T KOG1408|consen   39 NANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPL-TCVAFSQNGRYVATGECGRTPASKVWSL--------  109 (1080)
T ss_pred             cCCcccccccccceeeccCcEEEEEcccccchhheecccCcce-eEEEEcCCCcEEEecccCCCccceeeee--------
Confidence            4566666666667777788999999999999999999998877 999999  99999974  4445555554        


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC--CCeEEEEeCCCccceeeccccceeEEeeeccC
Q psy18018        117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY--DYMVKIWNPDTEECLHAELQETEVELSHGYAL  192 (635)
Q Consensus       117 ~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (635)
                                   +....+..|..|.-.|+|++|  .++++++.+.  |-.|.+||...............+....+..+
T Consensus       110 -------------a~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEd  176 (1080)
T KOG1408|consen  110 -------------AFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSED  176 (1080)
T ss_pred             -------------ccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccC
Confidence                         455678889999999999999  7889998876  44677888766544433333334444444445


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEE---------------------------------EE----eCC-------------
Q psy18018        193 RSRIVSGSDDNTLKVWSATTGKCLR---------------------------------TL----IGH-------------  222 (635)
Q Consensus       193 ~~~l~~~~~dg~i~vwd~~~~~~~~---------------------------------~~----~~h-------------  222 (635)
                      +.++++.+ ...|++|.++.++...                                 ++    .||             
T Consensus       177 gSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKW  255 (1080)
T KOG1408|consen  177 GSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKW  255 (1080)
T ss_pred             Cceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhh
Confidence            55655554 5689999876544110                                 00    111             


Q ss_pred             ----CCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018        223 ----TGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT  298 (635)
Q Consensus       223 ----~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (635)
                          +....+++.+.++++.|+.+|.|++++..+-.+..............   ..                        
T Consensus       256 VqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~---a~------------------------  308 (1080)
T KOG1408|consen  256 VQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDT---AN------------------------  308 (1080)
T ss_pred             hhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccch---hh------------------------
Confidence                11224566678899999999999999976643221100000000000   00                        


Q ss_pred             ecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceE--
Q psy18018        299 FLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR--  376 (635)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~--  376 (635)
                      ..++..                           .........-...-.+.|++....|.+..+|..+++||++.-+.+  
T Consensus       309 ~~q~~~---------------------------~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk  361 (1080)
T KOG1408|consen  309 LSQPEP---------------------------KNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK  361 (1080)
T ss_pred             cccccc---------------------------cccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccc
Confidence            000000                           000000011111223457777888999999999999999865433  


Q ss_pred             -EeeeCCCcceeEEEE-------------eCCEEEEEeCCCcEEEEEccCCcceeE------------------------
Q psy18018        377 -HTLMGHQSLTSGMEL-------------RNNILVSGNADSTVKVWDIVSGTKKLM------------------------  418 (635)
Q Consensus       377 -~~~~~~~~~v~~l~~-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------  418 (635)
                       ..+.-|...|..+..             .+..+++++.|++|++|++.......+                        
T Consensus       362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~  441 (1080)
T KOG1408|consen  362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH  441 (1080)
T ss_pred             eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence             334456666655532             245799999999999999876321111                        


Q ss_pred             ----------------------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-----CCEEEE
Q psy18018        419 ----------------------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-----NNILVS  471 (635)
Q Consensus       419 ----------------------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s  471 (635)
                                            ....+|+|++|++|...|++++|++.+.+....+.+|++.|.|+.++     .++|++
T Consensus       442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence                                  11378999999999999999999999999999999999999999985     358999


Q ss_pred             EeCCCcEEEEECCC-CceeEEecCCCcccccEEEEEe--cC--CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeE
Q psy18018        472 GNADSTVKVWDIVS-GQCLQTLSGRNKHQSAVTCLQF--NS--RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       472 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  546 (635)
                      ++.|..|++||... ..+++++.+   |...|+++.|  +|  ..+++++.|..|.+--.+.......+..+...     
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~---HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t-----  593 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDG---HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT-----  593 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcc---cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc-----
Confidence            99999999999864 355666766   9999999999  44  67899999998766433322222222221111     


Q ss_pred             EeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                       .....+..|+..|..+++++++.|..|+|||+++|++.+.|..-  ..|.+....+...|.|.|||+.+.|++    |-
T Consensus       594 -~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdkt----l~  666 (1080)
T KOG1408|consen  594 -LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDKT----LC  666 (1080)
T ss_pred             -cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc--ccCCCceEEEEECCCccEEEEeecCCc----eE
Confidence             12346788999999999999999999999999999999999643  456677889999999999999999999    66


Q ss_pred             EEeeecC
Q psy18018        627 VLDFDVD  633 (635)
Q Consensus       627 ~~d~~~~  633 (635)
                      .+||..+
T Consensus       667 ~~Df~sg  673 (1080)
T KOG1408|consen  667 FVDFVSG  673 (1080)
T ss_pred             EEEeccc
Confidence            7777543

>KOG0286|consensus

Probab=100.00  E-value=7.1e-38  Score=258.09  Aligned_cols=289  Identities=21%  Similarity=0.363  Sum_probs=246.6

Q ss_pred             CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018         15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      ++..++|+||...| .++.|+    +|+++|.+++.++.        ++|||.-+...++.++-...+| ...||+  |+
T Consensus        45 ~~~rr~LkGH~~Ki-~~~~ws----~Dsr~ivSaSqDGk--------lIvWDs~TtnK~haipl~s~WV-MtCA~sPSg~  110 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKI-YAMDWS----TDSRRIVSASQDGK--------LIVWDSFTTNKVHAIPLPSSWV-MTCAYSPSGN  110 (343)
T ss_pred             eeeEEEecccccce-eeeEec----CCcCeEEeeccCCe--------EEEEEcccccceeEEecCceeE-EEEEECCCCC
Confidence            34458999999999 999999    99999999997543        4469999999999999999999 788998  99


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      ++|.||-|+...||++.+.+.       +|        .-+..+.+.+|++-+.|+.| |...|+|++.|.+..+||+++
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~-------~g--------~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDA-------EG--------NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET  175 (343)
T ss_pred             eEEecCcCceeEEEecccccc-------cc--------cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence            999999999999999885421       11        12456789999999999999 999999999999999999999


Q ss_pred             ccceeeccccceeEEeeeccC--CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEE
Q psy18018        172 EECLHAELQETEVELSHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKG  247 (635)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~  247 (635)
                      ++.+..+.+|..-+.....++  .+.+++|+-|+..++||++.+.++++|.+|...|.++.|  +|.-+++|+.|++.++
T Consensus       176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRl  255 (343)
T KOG0286|consen  176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRL  255 (343)
T ss_pred             ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEE
Confidence            999999999988777776655  689999999999999999999999999999999999999  6889999999999999


Q ss_pred             ecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhh
Q psy18018        248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE  327 (635)
Q Consensus       248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (635)
                      ||++......                                                                      
T Consensus       256 yDlRaD~~~a----------------------------------------------------------------------  265 (343)
T KOG0286|consen  256 YDLRADQELA----------------------------------------------------------------------  265 (343)
T ss_pred             EeecCCcEEe----------------------------------------------------------------------
Confidence            9998743211                                                                      


Q ss_pred             hhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcE
Q psy18018        328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTV  405 (635)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i  405 (635)
                            .............++||..|++|++|..|..+.+||.-.++.+..+.+|..+|.++..+  +..+++++.|..+
T Consensus       266 ------~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  266 ------VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             ------eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence                  00012223455678899999999999999999999999999999999999999999986  4466677777777


Q ss_pred             EEE
Q psy18018        406 KVW  408 (635)
Q Consensus       406 ~iw  408 (635)
                      ++|
T Consensus       340 riW  342 (343)
T KOG0286|consen  340 RIW  342 (343)
T ss_pred             eec
Confidence            776

>KOG0279|consensus

Probab=100.00  E-value=4.4e-37  Score=251.84  Aligned_cols=292  Identities=22%  Similarity=0.378  Sum_probs=237.8

Q ss_pred             eEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEE
Q psy18018        133 ECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWS  209 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  209 (635)
                      ....++++|.+.|+.++.   +...+++++.|.++.+|++...                                    |
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d------------------------------------d   49 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD------------------------------------D   49 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC------------------------------------c
Confidence            455688999999999998   6789999999999999997531                                    5


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccc
Q psy18018        210 ATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP  289 (635)
Q Consensus       210 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (635)
                      ...|.+++.+.||+..|..+.                                                           
T Consensus        50 ~~~G~~~r~~~GHsH~v~dv~-----------------------------------------------------------   70 (315)
T KOG0279|consen   50 IKYGVPVRRLTGHSHFVSDVV-----------------------------------------------------------   70 (315)
T ss_pred             cccCceeeeeeccceEecceE-----------------------------------------------------------
Confidence            567889999999998777655                                                           


Q ss_pred             cceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEE
Q psy18018        290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWE  369 (635)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~  369 (635)
                                                                                 +++||++.++++.|+.+++||
T Consensus        71 -----------------------------------------------------------~s~dg~~alS~swD~~lrlWD   91 (315)
T KOG0279|consen   71 -----------------------------------------------------------LSSDGNFALSASWDGTLRLWD   91 (315)
T ss_pred             -----------------------------------------------------------EccCCceEEeccccceEEEEE
Confidence                                                                       788999999999999999999


Q ss_pred             ccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee
Q psy18018        370 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLR  449 (635)
Q Consensus       370 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  449 (635)
                      +.+++..+.|.+|...|.+++++                               +|.+.+++|+.|++|.+||.. +.+.
T Consensus        92 l~~g~~t~~f~GH~~dVlsva~s-------------------------------~dn~qivSGSrDkTiklwnt~-g~ck  139 (315)
T KOG0279|consen   92 LATGESTRRFVGHTKDVLSVAFS-------------------------------TDNRQIVSGSRDKTIKLWNTL-GVCK  139 (315)
T ss_pred             ecCCcEEEEEEecCCceEEEEec-------------------------------CCCceeecCCCcceeeeeeec-ccEE
Confidence            99999999999999999999987                               444555666666666666655 3344


Q ss_pred             eeeccC--CccEEEEEecCC----EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcE
Q psy18018        450 HTLMGH--QSLTSGMELRNN----ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTV  521 (635)
Q Consensus       450 ~~~~~~--~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i  521 (635)
                      .++..+  ...|+++.|.|+    ++++++.|+++++||+++.+....+.+   |...++.+++  ||..+++|+.||.+
T Consensus       140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSpDGslcasGgkdg~~  216 (315)
T KOG0279|consen  140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSPDGSLCASGGKDGEA  216 (315)
T ss_pred             EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECCCCCEEecCCCCceE
Confidence            444433  789999999654    899999999999999999998888888   8888888888  89999999999999


Q ss_pred             EEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCC----CCC
Q psy18018        522 KLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG----GSG  597 (635)
Q Consensus       522 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~  597 (635)
                      .+||++.++.+..+            .+...|.+++|+|+.-.|+.+. +..|+|||+.++..+..+..-..+    ...
T Consensus       217 ~LwdL~~~k~lysl------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  217 MLWDLNEGKNLYSL------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             EEEEccCCceeEec------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCC
Confidence            99999998865444            4688999999999887777554 556999999999988877532111    113


Q ss_pred             ceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        598 GVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       598 ~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      ..-.+++||+||..|.+|-.|+.  +++|.+
T Consensus       284 ~~clslaws~dG~tLf~g~td~~--irv~qv  312 (315)
T KOG0279|consen  284 PICLSLAWSADGQTLFAGYTDNV--IRVWQV  312 (315)
T ss_pred             cEEEEEEEcCCCcEEEeeecCCc--EEEEEe
Confidence            45678999999999999999998  555543

>KOG0273|consensus

Probab=100.00  E-value=2.8e-37  Score=271.23  Aligned_cols=269  Identities=25%  Similarity=0.444  Sum_probs=241.4

Q ss_pred             ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc
Q psy18018        338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      .+.....+.++|+.+|..|++|..+|.+++|+.. |.++.++..|.++|.++.|+  ++++++++.|+++.+||..++..
T Consensus       232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             CCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            3445677888999999999999999999999975 88889999999999999998  78999999999999999999988


Q ss_pred             eeEEEEEee--------CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCC
Q psy18018        416 KLMFRICLF--------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       416 ~~~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~  485 (635)
                      ...+...+.        +...+++.+.|+.|+++.+....++.++.+|.+.|.++.|+  +.+|+++++|++++||+...
T Consensus       311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            777766433        45679999999999999999999999999999999999998  67999999999999999998


Q ss_pred             CceeEEecCCCcccccEEEEEec-----------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCcee
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQFN-----------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL  554 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  554 (635)
                      ......+..   |...|..+.|.           +..+++++.|++|++||+..+..+..+..           |..+|.
T Consensus       391 ~~~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-----------H~~pVy  456 (524)
T KOG0273|consen  391 SNSVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-----------HQEPVY  456 (524)
T ss_pred             Ccchhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-----------CCCceE
Confidence            888888887   88888888872           56899999999999999999998888765           799999


Q ss_pred             cccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        555 CPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       555 ~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +++|||+|+|+|+|+.||.|.||++++++..+..      ...+.|..|+|+.+|.+|.++-.|+.    +.++|+.
T Consensus       457 svafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~------~~~~~Ifel~Wn~~G~kl~~~~sd~~----vcvldlr  523 (524)
T KOG0273|consen  457 SVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY------QGTGGIFELCWNAAGDKLGACASDGS----VCVLDLR  523 (524)
T ss_pred             EEEecCCCcEEEecCCCCeeEeccccchheeEee------cCCCeEEEEEEcCCCCEEEEEecCCC----ceEEEec
Confidence            9999999999999999999999999999999888      34667999999999999999999998    5666653

>KOG0279|consensus

Probab=100.00  E-value=6.6e-37  Score=250.83  Aligned_cols=298  Identities=27%  Similarity=0.464  Sum_probs=235.8

Q ss_pred             CCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC  147 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~  147 (635)
                      ....+|++|++.| +.++..   .+.|++++.|.++.+|++...                |.+.|.+++.++||...|..
T Consensus         6 ~l~~tl~gh~d~V-t~la~~~~~~~~l~sasrDk~ii~W~L~~d----------------d~~~G~~~r~~~GHsH~v~d   68 (315)
T KOG0279|consen    6 VLRGTLEGHTDWV-TALAIKIKNSDILVSASRDKTIIVWKLTSD----------------DIKYGVPVRRLTGHSHFVSD   68 (315)
T ss_pred             eeeeeecCCCceE-EEEEeecCCCceEEEcccceEEEEEEeccC----------------ccccCceeeeeeccceEecc
Confidence            3456789999999 889888   678999999999999998743                56778999999999999998


Q ss_pred             EEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        148 VQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       148 l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                      +..  ||++.++++.|+++++||                                         +.+++..+.|.+|...
T Consensus        69 v~~s~dg~~alS~swD~~lrlWD-----------------------------------------l~~g~~t~~f~GH~~d  107 (315)
T KOG0279|consen   69 VVLSSDGNFALSASWDGTLRLWD-----------------------------------------LATGESTRRFVGHTKD  107 (315)
T ss_pred             eEEccCCceEEeccccceEEEEE-----------------------------------------ecCCcEEEEEEecCCc
Confidence            887  777777777666555555                                         4566667788899999


Q ss_pred             eEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhh
Q psy18018        226 VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL  305 (635)
Q Consensus       226 v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (635)
                      |.+++                                                                           
T Consensus       108 Vlsva---------------------------------------------------------------------------  112 (315)
T KOG0279|consen  108 VLSVA---------------------------------------------------------------------------  112 (315)
T ss_pred             eEEEE---------------------------------------------------------------------------
Confidence            98888                                                                           


Q ss_pred             HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCC--C
Q psy18018        306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH--Q  383 (635)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~--~  383 (635)
                                                                 |++|.+++++|+.|.+|.+|+.. +.+..++..+  .
T Consensus       113 -------------------------------------------~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~  148 (315)
T KOG0279|consen  113 -------------------------------------------FSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHR  148 (315)
T ss_pred             -------------------------------------------ecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCc
Confidence                                                       55566666666666666677665 3444444333  6


Q ss_pred             cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE
Q psy18018        384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  463 (635)
Q Consensus       384 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  463 (635)
                      +.|.++.|+++                             .+..++++++.|+++++||+++.+....+.+|++.++.+.
T Consensus       149 ~WVscvrfsP~-----------------------------~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~  199 (315)
T KOG0279|consen  149 EWVSCVRFSPN-----------------------------ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT  199 (315)
T ss_pred             CcEEEEEEcCC-----------------------------CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEE
Confidence            78899998743                             1245688888889999999999999999999999998877


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeecccee
Q psy18018        464 L--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI  540 (635)
Q Consensus       464 ~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  540 (635)
                      +  +|.++++|+.||.+.+||++.++.+..+.    +...|.+++|. .++.+++..+..|+|||+.++..+..+.....
T Consensus       200 vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~  275 (315)
T KOG0279|consen  200 VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI  275 (315)
T ss_pred             ECCCCCEEecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc
Confidence            6  67799999999999999999999988887    78899999995 45555566677799999999988877765433


Q ss_pred             cCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      ..  ..........+++||+||..|+.|..|+.|++|.+.
T Consensus       276 g~--s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  276 GP--SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cc--ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            22  112223456789999999999999999999999875

>KOG0296|consensus

Probab=100.00  E-value=5.2e-37  Score=260.91  Aligned_cols=329  Identities=22%  Similarity=0.376  Sum_probs=259.6

Q ss_pred             CCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEE
Q psy18018         72 DPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQ  149 (635)
Q Consensus        72 ~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~  149 (635)
                      -+..|..|++.+ .+++.+  .+++||||.|..-.||++.+                     ++....+.+|...|+++.
T Consensus        56 S~~tF~~H~~sv-Favsl~P~~~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~  113 (399)
T KOG0296|consen   56 SLVTFDKHTDSV-FAVSLHPNNNLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCS  113 (399)
T ss_pred             ceeehhhcCCce-EEEEeCCCCceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEE
Confidence            356789999998 788888  77888888888777777664                     456788899999999999


Q ss_pred             e--cCCEEEEEeCCCeEEEEeCCCccceeecc-ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018        150 Y--DGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV  226 (635)
Q Consensus       150 ~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  226 (635)
                      |  ||.+||||+.+|.|+||...++.....+. ....+......+....|++|+.||.+.+|.+.++...+.+.||..++
T Consensus       114 FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c  193 (399)
T KOG0296|consen  114 FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC  193 (399)
T ss_pred             EccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence            9  99999999999999999999998888776 44566777777888899999999999999999988888999998876


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      ++=.                                                                            
T Consensus       194 t~G~----------------------------------------------------------------------------  197 (399)
T KOG0296|consen  194 TCGE----------------------------------------------------------------------------  197 (399)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            6422                                                                            


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc-c
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-L  385 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-~  385 (635)
                                                                |.|+|++++++..||+|++|+..+++++..+.+... .
T Consensus       198 ------------------------------------------f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~  235 (399)
T KOG0296|consen  198 ------------------------------------------FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE  235 (399)
T ss_pred             ------------------------------------------ccCCCceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence                                                      788999999999999999999999998887764332 3


Q ss_pred             eeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE
Q psy18018        386 TSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  463 (635)
Q Consensus       386 v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  463 (635)
                      ..++.++  +..++.|..++.+++-+..+++.                       ..-  ..+........+...+.++.
T Consensus       236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV-----------------------v~~--~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKV-----------------------VNC--NNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CCccccccccceeEeccCCccEEEEccccceE-----------------------EEe--cCCCCccccccchhhhhhhh
Confidence            4555554  56667776666655443332211                       111  11111111223444444444


Q ss_pred             e---cC--CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018        464 L---RN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       464 ~---~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      +   +.  .+.|+|+-||+|.|||+...++.....    |...|+.+.|. ..+|++++.||.|+.||.++|+++..+.+
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~----he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE----HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheecc----CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence            3   32  388999999999999999877666665    88889999995 49999999999999999999999888776


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                                 |...|.+++++|+.++++|++.|++.+|++.+
T Consensus       367 -----------H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  367 -----------HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             -----------CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                       78899999999999999999999999999875

>KOG0273|consensus

Probab=100.00  E-value=3.8e-37  Score=270.43  Aligned_cols=331  Identities=24%  Similarity=0.398  Sum_probs=267.9

Q ss_pred             ccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeecCC----CCCCceee------ccCc---ceE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRTRP----IKDPKVLK------GHDD---HVI   84 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~~~----~~~~~~l~------~h~~---~vi   84 (635)
                      +.+. |..+| .+-+|+    |-.. ++|+++.+-.        -.+|+...    +.....|+      ++..   .-|
T Consensus       173 kvl~-~~~~V-~~~~Wn----P~~~~llasg~~~s~--------ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdV  238 (524)
T KOG0273|consen  173 KVLR-HESEV-FICAWN----PLRDGLLASGSGDST--------ARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDV  238 (524)
T ss_pred             eecc-CCCce-EEEecC----chhhhhhhccCCccc--------eeeeeehhhccccchhhhhhhhhhhhcccCCccCCc
Confidence            4444 99999 899999    6666 8888886433        33577653    11111111      2222   335


Q ss_pred             EEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC
Q psy18018         85 TCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY  160 (635)
Q Consensus        85 ~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~  160 (635)
                      ++++|+  |.+||+|+.||.+++|+..                      +.++.+|..|.+||.+|.|  +|.+|++++.
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~----------------------G~l~~tl~~HkgPI~slKWnk~G~yilS~~v  296 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKD----------------------GNLISTLGQHKGPIFSLKWNKKGTYILSGGV  296 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecC----------------------chhhhhhhccCCceEEEEEcCCCCEEEeccC
Confidence            999999  9999999999999999864                      6778889999999999999  8999999999


Q ss_pred             CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEee
Q psy18018        161 DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGS  240 (635)
Q Consensus       161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~  240 (635)
                      |+++.+||..+++....+..+......+.+...+.+++.+.|+.|+++.+....++.++.+|.++|.++.|+        
T Consensus       297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n--------  368 (524)
T KOG0273|consen  297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN--------  368 (524)
T ss_pred             CccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC--------
Confidence            999999999999988888777777666778888999999999999999999999999999999999998854        


Q ss_pred             CceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeec
Q psy18018        241 TDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAE  320 (635)
Q Consensus       241 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (635)
                                                                                                      
T Consensus       369 --------------------------------------------------------------------------------  368 (524)
T KOG0273|consen  369 --------------------------------------------------------------------------------  368 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEe
Q psy18018        321 DNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN  400 (635)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~  400 (635)
                                                    |.+.+|++++.|+++++|+.........++.|...|..+.|++.      
T Consensus       369 ------------------------------~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~------  412 (524)
T KOG0273|consen  369 ------------------------------PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT------  412 (524)
T ss_pred             ------------------------------CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC------
Confidence                                          44455555555666666666666666778888888888777631      


Q ss_pred             CCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEE
Q psy18018        401 ADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKV  480 (635)
Q Consensus       401 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~i  480 (635)
                                                                              ++++.-...+..+++++.|++|++
T Consensus       413 --------------------------------------------------------g~v~~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  413 --------------------------------------------------------GPVTSNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             --------------------------------------------------------CCccCCCcCCceEEEeecCCeEEE
Confidence                                                                    111111224557889999999999


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      ||+..+.++..+..   |..+|.+++|  +++++|+|+.||.|.+|+.++++..+....            ...|..++|
T Consensus       437 wdv~~gv~i~~f~k---H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~------------~~~Ifel~W  501 (524)
T KOG0273|consen  437 WDVESGVPIHTLMK---HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG------------TGGIFELCW  501 (524)
T ss_pred             EEccCCceeEeecc---CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC------------CCeEEEEEE
Confidence            99999999999977   9999999999  599999999999999999999998888765            567999999


Q ss_pred             cCCCeEEEEecCCCeEEEEeCC
Q psy18018        559 QFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       559 s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +.+|.+|..+-.|+.+++-|+.
T Consensus       502 n~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  502 NAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999874

>KOG1539|consensus

Probab=100.00  E-value=1.3e-35  Score=278.99  Aligned_cols=480  Identities=22%  Similarity=0.362  Sum_probs=331.2

Q ss_pred             cccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC-CC----CceeeccCcceEEEEEEc---C
Q psy18018         20 VLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI-KD----PKVLKGHDDHVITCLQFS---G   91 (635)
Q Consensus        20 ~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~-~~----~~~l~~h~~~vi~~~~~s---~   91 (635)
                      .+.+|...| .-+.      |=|.++.++..        +..+.||+.... ++    +..++...+.+ +++.-.   =
T Consensus       109 ~~~~~~a~v-~~l~------~fGe~lia~d~--------~~~l~vw~~s~~~~e~~l~~~~~~~~~~~I-tal~HP~TYL  172 (910)
T KOG1539|consen  109 TTLLHGAKV-HLLL------PFGEHLIAVDI--------SNILFVWKTSSIQEELYLQSTFLKVEGDFI-TALLHPSTYL  172 (910)
T ss_pred             EeccccceE-EEEe------eecceEEEEEc--------cCcEEEEEeccccccccccceeeeccCCce-eeEecchhhe
Confidence            445666555 3322      22455555554        445557998874 22    12233333334 665554   5


Q ss_pred             CEEEEeeCCCcEEEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         92 SRIVSGSDDNTLKVWSATTGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        92 ~~l~s~~~d~~v~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      +.++.|+.+|.+.+|++.+++.+                     ++.|..+|+|.+++++.++.+.+++...++|++++|
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence            66889999999999999999987                     899999999999999999999999766799999999


Q ss_pred             --cCC-EEEEEeCCCeEEEEeCCCccceeecc-cc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCC--C--eEEEEEeC
Q psy18018        151 --DGK-LVVSGAYDYMVKIWNPDTEECLHAEL-QE-TEVELSHGYALRSRIVSGSDDNTLKVWSATT--G--KCLRTLIG  221 (635)
Q Consensus       151 --~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~  221 (635)
                        ||. .||+++..|.+-+||++..+.+.... .+ ..+....+.+....+++++.|..+++|=.++  |  +.++.-.|
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G  332 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG  332 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence              765 67888888999999999988877655 23 4455555666678899999999999886554  3  55667789


Q ss_pred             CCCCeEEEEe---eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018        222 HTGGVWSSQM---AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT  298 (635)
Q Consensus       222 h~~~v~~~~~---~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (635)
                      |..|..++.|   ++..+.+++.|++++.+++.........-. ...........         ......-.-.++..++
T Consensus       333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-~~~~~~~kk~~---------~~~~~~~k~p~i~~fa  402 (910)
T KOG1539|consen  333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-LHNKKRAKKVN---------VFSTEKLKLPPIVEFA  402 (910)
T ss_pred             CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-ccccccccccc---------ccchhhhcCCcceeee
Confidence            9999999999   478999999999999998765432111000 00000000000         0000000111222222


Q ss_pred             ecCchhhH-----hhc---ccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018        299 FLQPEDLL-----RAA---QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA  370 (635)
Q Consensus       299 ~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~  370 (635)
                      +.......     ++.   .....|++.......+...     ............++++++.|++.+.|+..|.|-+|++
T Consensus       403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-----~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-----PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             cccchhhhhcceeEEecCcceEEEEeccCcccccEEec-----CccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence            22211110     000   1122233222111111000     0001113345667889999999999999999999999


Q ss_pred             cCCceEEee---eCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        371 ESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       371 ~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                      ++|-....+   +.|..+|.+++.+  ++.+++++.+|-+++||..                                 +
T Consensus       478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~---------------------------------~  524 (910)
T KOG1539|consen  478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK---------------------------------K  524 (910)
T ss_pred             ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC---------------------------------C
Confidence            999988888   5899999999998  4556666666666666554                                 3


Q ss_pred             CceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcE
Q psy18018        446 GNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTV  521 (635)
Q Consensus       446 ~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i  521 (635)
                      ..++..+.- ...+.++..  ...+++.+.+|-.|+++|..+.+.++.+.+   |...|++++|  ||++|++++.|++|
T Consensus       525 k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g---h~nritd~~FS~DgrWlisasmD~tI  600 (910)
T KOG1539|consen  525 KVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG---HGNRITDMTFSPDGRWLISASMDSTI  600 (910)
T ss_pred             cceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc---cccceeeeEeCCCCcEEEEeecCCcE
Confidence            333333332 122333333  456889999999999999999999999998   9999999999  79999999999999


Q ss_pred             EEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-CeEEEEeC
Q psy18018        522 KLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-GTVKLWDV  579 (635)
Q Consensus       522 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~v~iwd~  579 (635)
                      ++||+.++.++..+..            ..+++++.|||+|.+|||+..| .-|++|-=
T Consensus       601 r~wDlpt~~lID~~~v------------d~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  601 RTWDLPTGTLIDGLLV------------DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEEeccCcceeeeEec------------CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            9999999998877654            6789999999999999999988 67999963

>KOG0281|consensus

Probab=100.00  E-value=3.2e-38  Score=266.36  Aligned_cols=280  Identities=34%  Similarity=0.542  Sum_probs=238.0

Q ss_pred             CCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy18018        141 HLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI  220 (635)
Q Consensus       141 h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  220 (635)
                      ....|.|+.+|+..+++|..|++|++||..+.+++..+.++.+.+.+..+.. ..+++|+.|.+|++||+++++++.++-
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHh
Confidence            4568999999999999999999999999999999999999988877776654 489999999999999999999999999


Q ss_pred             CCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018        221 GHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL  300 (635)
Q Consensus       221 ~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (635)
                      +|...|..+.|+.+++++++.|.++.+||+....                                              
T Consensus       275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps----------------------------------------------  308 (499)
T KOG0281|consen  275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT----------------------------------------------  308 (499)
T ss_pred             hhcceeEEEEEeCCEEEEecCCceeEEEeccCch----------------------------------------------
Confidence            9999999999999999999999999999986532                                              


Q ss_pred             CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee
Q psy18018        301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  380 (635)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~  380 (635)
                                                     .........+|...+..+..+.+++++++.|.+|++|++.+++.++++.
T Consensus       309 -------------------------------~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~  357 (499)
T KOG0281|consen  309 -------------------------------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN  357 (499)
T ss_pred             -------------------------------HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhh
Confidence                                           1111223344555555677788899999999999999999999999999


Q ss_pred             CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE
Q psy18018        381 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS  460 (635)
Q Consensus       381 ~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~  460 (635)
                      +|...|.|+.+.+.+                                 +++|+.|.+|++||++.|.++..++||+.-|.
T Consensus       358 gHkRGIAClQYr~rl---------------------------------vVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  358 GHKRGIACLQYRDRL---------------------------------VVSGSSDNTIRLWDIECGACLRVLEGHEELVR  404 (499)
T ss_pred             cccccceehhccCeE---------------------------------EEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence            999999999876554                                 45555666777777888999999999999999


Q ss_pred             EEEecCCEEEEEeCCCcEEEEECCCCceeEEe------cCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCce
Q psy18018        461 GMELRNNILVSGNADSTVKVWDIVSGQCLQTL------SGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF  531 (635)
Q Consensus       461 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  531 (635)
                      ++.|+.+.+++|+.||+|++||+..+...+..      .....|.+.|..+.||...+++++.|.+|.+||..++..
T Consensus       405 ciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  405 CIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             heeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence            99999999999999999999999876433211      112238889999999999999999999999999987753

>KOG0281|consensus

Probab=100.00  E-value=5.9e-38  Score=264.71  Aligned_cols=277  Identities=29%  Similarity=0.533  Sum_probs=240.5

Q ss_pred             CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        222 HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       222 h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      ....|+++.++...+++|..|++|++||..+...                                              
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c----------------------------------------------  229 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC----------------------------------------------  229 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHH----------------------------------------------
Confidence            4568999999999999999999999999765321                                              


Q ss_pred             chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC
Q psy18018        302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  381 (635)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  381 (635)
                                                        .....+|...++++..+.+.+++|+.|.+|++||.++++++.++-.
T Consensus       230 ----------------------------------~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlih  275 (499)
T KOG0281|consen  230 ----------------------------------LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIH  275 (499)
T ss_pred             ----------------------------------HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhh
Confidence                                              1234568888999999999999999999999999999999999999


Q ss_pred             CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcce----------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee
Q psy18018        382 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKK----------LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT  451 (635)
Q Consensus       382 ~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  451 (635)
                      |...|..+.|++.++++++.|.++.+||+......          ........+.+++++++.|++|++|+..+++.+.+
T Consensus       276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRt  355 (499)
T KOG0281|consen  276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT  355 (499)
T ss_pred             hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehh
Confidence            99999999999999999999999999999876532          22334667889999999999999999999999999


Q ss_pred             eccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCce
Q psy18018        452 LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF  531 (635)
Q Consensus       452 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~  531 (635)
                      +.+|...|.|+.+.++++++|+.|.+|++||+..|.+++.+.+   |..-|.|+.||.+.+++|+.||+|++||+.++..
T Consensus       356 l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRFd~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  356 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             hhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhc---hHHhhhheeecCceeeeccccceEEEEecccccC
Confidence            9999999999999999999999999999999999999999998   9999999999999999999999999999998763


Q ss_pred             eeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                      ......  .........|++.|..+.|  |...+++++.|.+|.|||+-++..-
T Consensus       433 pra~~~--~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  433 PRAPAS--TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             Cccccc--chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            322111  1111223347888988888  7888999999999999999877544

>KOG0296|consensus

Probab=100.00  E-value=1.2e-35  Score=252.64  Aligned_cols=301  Identities=23%  Similarity=0.358  Sum_probs=248.0

Q ss_pred             CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018         16 KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        16 ~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      .....|++|.++| -+++.+    |+..++|+|+.+...+        +|+..++.....+.||.+.| +|+.||  |.+
T Consensus        55 dS~~tF~~H~~sv-Favsl~----P~~~l~aTGGgDD~Af--------lW~~~~ge~~~eltgHKDSV-t~~~Fshdgtl  120 (399)
T KOG0296|consen   55 DSLVTFDKHTDSV-FAVSLH----PNNNLVATGGGDDLAF--------LWDISTGEFAGELTGHKDSV-TCCSFSHDGTL  120 (399)
T ss_pred             cceeehhhcCCce-EEEEeC----CCCceEEecCCCceEE--------EEEccCCcceeEecCCCCce-EEEEEccCceE
Confidence            3457899999999 899999    8999999998765444        69999999999999999999 899999  999


Q ss_pred             EEEeeCCCcEEEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018         94 IVSGSDDNTLKVWSATTGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--  150 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--  150 (635)
                      ||||+-+|.|+||+..+|...                     |++|+.||.+-+|.+.++...+.+.||+.++++=.|  
T Consensus       121 LATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p  200 (399)
T KOG0296|consen  121 LATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP  200 (399)
T ss_pred             EEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence            999999999999999987653                     999999999999999998899999999999999999  


Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccce--eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe--------
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE--VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI--------  220 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------  220 (635)
                      ||++++++..||+|++||+.+++++........  .........+..++.|..++.+++-+..+|+.+....        
T Consensus       201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~  280 (399)
T KOG0296|consen  201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP  280 (399)
T ss_pred             CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence            999999999999999999999998887664332  2222333456788999999999999999999887776        


Q ss_pred             CCCCCeEEEEe---e--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeE
Q psy18018        221 GHTGGVWSSQM---A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALY  295 (635)
Q Consensus       221 ~h~~~v~~~~~---~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (635)
                      .+...+.++.+   +  =.+.++|+-||+|.+||+....+.                                       
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---------------------------------------  321 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---------------------------------------  321 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---------------------------------------
Confidence            34455555554   2  457899999999999998764321                                       


Q ss_pred             EEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec-CcEEEEecCCCeEEEEEccCCc
Q psy18018        296 VLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD-GVHVVSGSLDTSIRVWEAESGN  374 (635)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~  374 (635)
                                                                ....|...++.+-.. ..+|++++.+|.|+.||.++|+
T Consensus       322 ------------------------------------------~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  322 ------------------------------------------HICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             ------------------------------------------eeccCCCceEEEEEcCcchheeeccCceEEeeeccccc
Confidence                                                      111223333334333 4789999999999999999999


Q ss_pred             eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEcc
Q psy18018        375 LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       375 ~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~  411 (635)
                      ++..+.+|...|.+++++  .+++++++.|++.++|+..
T Consensus       360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999987  5677778888777777653

>KOG0295|consensus

Probab=100.00  E-value=1.3e-36  Score=258.32  Aligned_cols=301  Identities=30%  Similarity=0.503  Sum_probs=248.9

Q ss_pred             CCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--C
Q psy18018         14 PIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--G   91 (635)
Q Consensus        14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~   91 (635)
                      +.+..+.+.||..+| +.+-|.    |+-..+++++.+.        .+.+||..++++.+.|+||++.+ ..++|+  |
T Consensus        97 Rp~l~~~l~g~r~~v-t~v~~h----p~~~~v~~as~d~--------tikv~D~~tg~~e~~LrGHt~sv-~di~~~a~G  162 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSV-TRVIFH----PSEALVVSASEDA--------TIKVFDTETGELERSLRGHTDSV-FDISFDASG  162 (406)
T ss_pred             CCCchhhhhccccce-eeeeec----cCceEEEEecCCc--------eEEEEEccchhhhhhhhccccce-eEEEEecCc
Confidence            345567889999999 999999    8999999998644        44569999999999999999997 899999  9


Q ss_pred             CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeC
Q psy18018         92 SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus        92 ~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~  169 (635)
                      ++||+++.|-.+++||.++                    ..++++.+.+|...|.++.|  -|.+++|++.         
T Consensus       163 k~l~tcSsDl~~~LWd~~~--------------------~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---------  213 (406)
T KOG0295|consen  163 KYLATCSSDLSAKLWDFDT--------------------FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---------  213 (406)
T ss_pred             cEEEecCCccchhheeHHH--------------------HHHHHHHhcCcccceeeEEEEecCCeeeeccc---------
Confidence            9999999999899998762                    24677788899999999998  5555555554         


Q ss_pred             CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEec
Q psy18018        170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWS  249 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~  249 (635)
                                                      |.+|+.|++.++-++.++.+|...|..+.                   
T Consensus       214 --------------------------------D~tik~We~~tg~cv~t~~~h~ewvr~v~-------------------  242 (406)
T KOG0295|consen  214 --------------------------------DNTIKAWECDTGYCVKTFPGHSEWVRMVR-------------------  242 (406)
T ss_pred             --------------------------------ccceeEEecccceeEEeccCchHhEEEEE-------------------
Confidence                                            55556666677788888888887666554                   


Q ss_pred             ccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhh
Q psy18018        250 NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC  329 (635)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (635)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (406)
T KOG0295|consen  243 --------------------------------------------------------------------------------  242 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEE
Q psy18018        330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD  409 (635)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd  409 (635)
                                         .+.||..+++++.|.++++|-..++++...++.|+.+|.+++|.+....+...+.      
T Consensus       243 -------------------v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a------  297 (406)
T KOG0295|consen  243 -------------------VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA------  297 (406)
T ss_pred             -------------------ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc------
Confidence                               4457778888999999999999999999999999999999999643222111110      


Q ss_pred             ccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCc
Q psy18018        410 IVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~  487 (635)
                        ++.        ...++++.+++.|++|++||+.++.++.++.+|.+.|.+++++  |++|+++.+|+++++||+++.+
T Consensus       298 --t~~--------~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  298 --TGS--------TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             --cCC--------CCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence              000        0145689999999999999999999999999999999999997  8899999999999999999999


Q ss_pred             eeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018        488 CLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       488 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~  526 (635)
                      +...+..   |..-++++.|  +..++++|+-|.++++|.-
T Consensus       368 cmk~~~a---h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  368 CMKTLEA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeccCC---CcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999886   8888999999  4679999999999999974

>KOG0315|consensus

Probab=100.00  E-value=8.7e-35  Score=234.21  Aligned_cols=287  Identities=20%  Similarity=0.368  Sum_probs=212.5

Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCCCeEE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGK--CLRTLIGHTGGVWS  228 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~  228 (635)
                      +.-+|+|++.|.+||+|...+|.+...+.+....+......++...+++.....|++||++++.  ++.++.+|...|.+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence            3457999999999999999999999998888777777776666666666667799999999864  68899999999888


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      +.|                                                                             
T Consensus        89 VgF-----------------------------------------------------------------------------   91 (311)
T KOG0315|consen   89 VGF-----------------------------------------------------------------------------   91 (311)
T ss_pred             EEE-----------------------------------------------------------------------------
Confidence            774                                                                             


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                                                               ..+|+++++|++||++++||++...+.+.+ .|..+|++
T Consensus        92 -----------------------------------------~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~  129 (311)
T KOG0315|consen   92 -----------------------------------------QCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNT  129 (311)
T ss_pred             -----------------------------------------eecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcce
Confidence                                                     445566666666666666666654433333 35578888


Q ss_pred             EEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEE--ec
Q psy18018        389 MELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGME--LR  465 (635)
Q Consensus       389 l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~--~~  465 (635)
                      +..+                               |+...|++|..+|.|++||+.+......+.. ....+.++.  ++
T Consensus       130 vvlh-------------------------------pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d  178 (311)
T KOG0315|consen  130 VVLH-------------------------------PNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD  178 (311)
T ss_pred             EEec-------------------------------CCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC
Confidence            8776                               2333455555555555555555444333332 223555554  57


Q ss_pred             CCEEEEEeCCCcEEEEECCCCc------eeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC-ceeeeec
Q psy18018        466 NNILVSGNADSTVKVWDIVSGQ------CLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG-EFSTPLM  536 (635)
Q Consensus       466 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~  536 (635)
                      +.+++.+...|..++|++-...      ++.+++.   |..-+..+.+  |+++||++|.|.+++||+.++. +....+.
T Consensus       179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a---h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~  255 (311)
T KOG0315|consen  179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA---HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT  255 (311)
T ss_pred             CcEEEEecCCccEEEEEccCCCccccceEhhheec---ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee
Confidence            8899999999999999987543      3334443   7777777666  7999999999999999999987 3333333


Q ss_pred             cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                                 .|..-+...+||.||+||+||+.|+.+++||++.++.+++.     .+|-....+++..
T Consensus       256 -----------gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-----~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  256 -----------GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-----QGHHKAAVCVALN  309 (311)
T ss_pred             -----------cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-----CCcccccEEEEee
Confidence                       36778999999999999999999999999999999999999     5677777777653

>KOG0276|consensus

Probab=100.00  E-value=3.6e-34  Score=260.53  Aligned_cols=223  Identities=27%  Similarity=0.420  Sum_probs=196.2

Q ss_pred             CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018         16 KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        16 ~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      +.++.|+-|.++| .|+.|.    |..-++..+=-        .+.+.||+.++...++.+.-..-+| ++..|-  .++
T Consensus         4 ~~krk~~~rSdRV-KsVd~H----PtePw~la~Ly--------nG~V~IWnyetqtmVksfeV~~~Pv-Ra~kfiaRknW   69 (794)
T KOG0276|consen    4 DFKRKFQSRSDRV-KSVDFH----PTEPWILAALY--------NGDVQIWNYETQTMVKSFEVSEVPV-RAAKFIARKNW   69 (794)
T ss_pred             hhhhHhhccCCce-eeeecC----CCCceEEEeee--------cCeeEEEecccceeeeeeeecccch-hhheeeeccce
Confidence            4457788899999 999999    88888877643        3334469999999999999888777 888888  899


Q ss_pred             EEEeeCCCcEEEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCC-eEEEEeeCCCcceEEEEe-
Q psy18018         94 IVSGSDDNTLKVWSATTGKCL---------------------LVSGSRDATLRVWHIESG-ECLHVLVGHLAAVRCVQY-  150 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~-~~~~~l~~h~~~v~~l~~-  150 (635)
                      +++|++|..|+|++..+++++                     +++++.|-+|++||.+.. .+.+++.||+.-|.+++| 
T Consensus        70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn  149 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN  149 (794)
T ss_pred             EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence            999999999999999999886                     899999999999999876 778899999999999999 


Q ss_pred             --cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCC---EEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRS---RIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                        |.+.+||++.|++|++|++....+..++.+|...+.+..+-+++   +|++|++|.++++||.++..|++++.||...
T Consensus       150 PkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N  229 (794)
T KOG0276|consen  150 PKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN  229 (794)
T ss_pred             CCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc
Confidence              88999999999999999999999999999887777776666554   9999999999999999999999999999999


Q ss_pred             eEEEEeeC--CEEEEeeCceeEEEecccc
Q psy18018        226 VWSSQMAG--NIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       226 v~~~~~~~--~~l~s~~~dg~i~~w~~~~  252 (635)
                      |..+.|.+  ..++||++||++|+|+..+
T Consensus       230 vs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  230 VSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             ceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            99999863  5788888888888887554

>KOG0285|consensus

Probab=100.00  E-value=3e-35  Score=249.41  Aligned_cols=286  Identities=25%  Similarity=0.443  Sum_probs=237.5

Q ss_pred             CCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceE
Q psy18018         69 PIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVR  146 (635)
Q Consensus        69 ~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~  146 (635)
                      +.++.+.+.||.++| .|+++.  .++++||+.|++++|||+.                     ++++..++.||-..|.
T Consensus       140 pwKl~rVi~gHlgWV-r~vavdP~n~wf~tgs~DrtikIwDla---------------------tg~LkltltGhi~~vr  197 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWV-RSVAVDPGNEWFATGSADRTIKIWDLA---------------------TGQLKLTLTGHIETVR  197 (460)
T ss_pred             cceehhhhhhccceE-EEEeeCCCceeEEecCCCceeEEEEcc---------------------cCeEEEeecchhheee
Confidence            456778899999999 999999  7789999988888888776                     5577889999999999


Q ss_pred             EEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee-ccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy18018        147 CVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG-YALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT  223 (635)
Q Consensus       147 ~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  223 (635)
                      .+++  -..+|++++.|+.|+.||++..+.++.+.++...+.+.. .+..+.|++++.|.++++||+++...+..+.||.
T Consensus       198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~  277 (460)
T KOG0285|consen  198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT  277 (460)
T ss_pred             eeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence            9999  577999999999999999999999999998866555544 5567899999999999999999999999999999


Q ss_pred             CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018        224 GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE  303 (635)
Q Consensus       224 ~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (635)
                      .+|.++.+                                                                        
T Consensus       278 ~~V~~V~~------------------------------------------------------------------------  285 (460)
T KOG0285|consen  278 NPVASVMC------------------------------------------------------------------------  285 (460)
T ss_pred             CcceeEEe------------------------------------------------------------------------
Confidence            99988773                                                                        


Q ss_pred             hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018        304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  383 (635)
                                                                    .|-...+++|+.|++|++||+..|+....+..|.
T Consensus       286 ----------------------------------------------~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk  319 (460)
T KOG0285|consen  286 ----------------------------------------------QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK  319 (460)
T ss_pred             ----------------------------------------------ecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence                                                          2333457778888888888888888888888999


Q ss_pred             cceeEEEEeCC--EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEE
Q psy18018        384 SLTSGMELRNN--ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  461 (635)
Q Consensus       384 ~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  461 (635)
                      ..+.+++.++.  .+++++.|                                  .|+-|++..+..++.+.+|...+++
T Consensus       320 ksvral~lhP~e~~fASas~d----------------------------------nik~w~~p~g~f~~nlsgh~~iint  365 (460)
T KOG0285|consen  320 KSVRALCLHPKENLFASASPD----------------------------------NIKQWKLPEGEFLQNLSGHNAIINT  365 (460)
T ss_pred             ceeeEEecCCchhhhhccCCc----------------------------------cceeccCCccchhhccccccceeee
Confidence            99999988732  33443333                                  3788888999999999999999999


Q ss_pred             EEec-CCEEEEEeCCCcEEEEECCCCceeEEecC-----CCcccccEEEEEec--CCEEEEEeCCCcEEEEECCC
Q psy18018        462 MELR-NNILVSGNADSTVKVWDIVSGQCLQTLSG-----RNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       462 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~  528 (635)
                      ++.+ .+++++|++.|.+.+||.+++...+....     .-.....|.+.+||  +..|++|..|.+|++|.-..
T Consensus       366 l~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  366 LSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             eeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            9985 56999999999999999998866555422     11234568889995  88999999999999997543

>KOG0315|consensus

Probab=100.00  E-value=2.4e-34  Score=231.66  Aligned_cols=288  Identities=18%  Similarity=0.354  Sum_probs=228.8

Q ss_pred             CCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEe
Q psy18018         41 CESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSG  118 (635)
Q Consensus        41 ~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~  118 (635)
                      +--+|++++.        +..+.+|...+|++.++++...+.| +.+...  ++.||+++ ...||+||+.+++      
T Consensus         9 ~~viLvsA~Y--------DhTIRfWqa~tG~C~rTiqh~dsqV-NrLeiTpdk~~LAaa~-~qhvRlyD~~S~n------   72 (311)
T KOG0315|consen    9 DPVILVSAGY--------DHTIRFWQALTGICSRTIQHPDSQV-NRLEITPDKKDLAAAG-NQHVRLYDLNSNN------   72 (311)
T ss_pred             CceEEEeccC--------cceeeeeehhcCeEEEEEecCccce-eeEEEcCCcchhhhcc-CCeeEEEEccCCC------
Confidence            3467888875        4555569999999999999888877 999998  66777666 4568888887653      


Q ss_pred             eCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEE
Q psy18018        119 SRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI  196 (635)
Q Consensus       119 ~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (635)
                                   ..++.++.+|...|+++.|  ||+++++|++||+++|||++.....+.+....++...+..+....|
T Consensus        73 -------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   73 -------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             -------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceE
Confidence                         3589999999999999999  9999999999999999999998877777777777778888888999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeee
Q psy18018        197 VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLI  276 (635)
Q Consensus       197 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (635)
                      +++..+|.|++||+....+...+.....                                                    
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~----------------------------------------------------  167 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDD----------------------------------------------------  167 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCC----------------------------------------------------
Confidence            9999999999999987655544421111                                                    


Q ss_pred             ccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE
Q psy18018        277 EPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV  356 (635)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  356 (635)
                                                                                       .....+.+.|||.++
T Consensus       168 -----------------------------------------------------------------~~i~sl~v~~dgsml  182 (311)
T KOG0315|consen  168 -----------------------------------------------------------------TSIQSLTVMPDGSML  182 (311)
T ss_pred             -----------------------------------------------------------------cceeeEEEcCCCcEE
Confidence                                                                             112233477888888


Q ss_pred             EEecCCCeEEEEEccCCc------eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        357 VSGSLDTSIRVWEAESGN------LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       357 ~~~~~dg~i~v~~~~~~~------~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      +.+...|..++|++-...      ++..++.|+..+...                               .++||+++|+
T Consensus       183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C-------------------------------~lSPd~k~la  231 (311)
T KOG0315|consen  183 AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC-------------------------------LLSPDVKYLA  231 (311)
T ss_pred             EEecCCccEEEEEccCCCccccceEhhheecccceEEEE-------------------------------EECCCCcEEE
Confidence            888888888888876543      334455555544433                               3468899999


Q ss_pred             EEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        431 SGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      +++.|.++++|+.++. +....+.+|+..+....|  ++.+|++|+.|+.+++|++..++.++...+   |.....|++.
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g---h~K~~vc~~l  308 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG---HHKAAVCVAL  308 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC---cccccEEEEe
Confidence            9999999999999887 677788999999988777  578999999999999999999999999988   7677777765


Q ss_pred             c
Q psy18018        508 N  508 (635)
Q Consensus       508 ~  508 (635)
                      +
T Consensus       309 n  309 (311)
T KOG0315|consen  309 N  309 (311)
T ss_pred             e
Confidence            3

>KOG0285|consensus

Probab=100.00  E-value=1.1e-34  Score=245.88  Aligned_cols=292  Identities=24%  Similarity=0.425  Sum_probs=245.6

Q ss_pred             eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeec-cCCCEEEEEeCCCcEEEEE
Q psy18018        133 ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY-ALRSRIVSGSDDNTLKVWS  209 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd  209 (635)
                      +..+.+.+|.+.|.|+++  ...++++|+.|++++|||+.+++....+.++...+....+ ....++++++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            566788899999999999  5789999999999999999999999998877665554444 4468999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccc
Q psy18018        210 ATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP  289 (635)
Q Consensus       210 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (635)
                      +...+.++.+.||-..|++++                                                           
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~-----------------------------------------------------------  242 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLD-----------------------------------------------------------  242 (460)
T ss_pred             chhhhhHHHhccccceeEEEe-----------------------------------------------------------
Confidence            999999999999999998877                                                           


Q ss_pred             cceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEE
Q psy18018        290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWE  369 (635)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~  369 (635)
                                                                                 +.|.-..|++|+.|..+++||
T Consensus       243 -----------------------------------------------------------lhPTldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  243 -----------------------------------------------------------LHPTLDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             -----------------------------------------------------------ccccceeEEecCCcceEEEee
Confidence                                                                       455556788899999999999


Q ss_pred             ccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee
Q psy18018        370 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLR  449 (635)
Q Consensus       370 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  449 (635)
                      +++...+..+.+|..+|..+.+.                               |-+..+++|+.|++|++||+..|+-.
T Consensus       264 iRtr~~V~~l~GH~~~V~~V~~~-------------------------------~~dpqvit~S~D~tvrlWDl~agkt~  312 (460)
T KOG0285|consen  264 IRTRASVHVLSGHTNPVASVMCQ-------------------------------PTDPQVITGSHDSTVRLWDLRAGKTM  312 (460)
T ss_pred             ecccceEEEecCCCCcceeEEee-------------------------------cCCCceEEecCCceEEEeeeccCcee
Confidence            99999999999999999998876                               22234667777788888888888888


Q ss_pred             eeeccCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEEC
Q psy18018        450 HTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       450 ~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~  526 (635)
                      .++..|...|.+++.+++  .+++++.|. |+-|++..+..+..+.+   |...|.+++. +..++++|++.|.+.+||.
T Consensus       313 ~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsg---h~~iintl~~nsD~v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  313 ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSG---HNAIINTLSVNSDGVLVSGGDNGSIMFWDW  388 (460)
T ss_pred             EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccc---ccceeeeeeeccCceEEEcCCceEEEEEec
Confidence            999999999999998765  778888775 99999999999998887   9999999999 4789999999999999999


Q ss_pred             CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +++...+.........   .+.....|.+.+|...|..|++|..|.+|++|.-.
T Consensus       389 ksg~nyQ~~~t~vqpG---Sl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  389 KSGHNYQRGQTIVQPG---SLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             CcCcccccccccccCC---ccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            9987655443221111   12235678999999999999999999999999743

>KOG0295|consensus

Probab=100.00  E-value=1.6e-34  Score=245.68  Aligned_cols=264  Identities=25%  Similarity=0.431  Sum_probs=238.9

Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCC-------
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG-------  413 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-------  413 (635)
                      ....+-++|+-..+++++.|++|++||..++++...+++|...+..++|+  +.++++++.|-.+++||..+.       
T Consensus       110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~  189 (406)
T KOG0295|consen  110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL  189 (406)
T ss_pred             ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh
Confidence            33445578899999999999999999999999999999999999999997  789999999999999998752       


Q ss_pred             ---cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce
Q psy18018        414 ---TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC  488 (635)
Q Consensus       414 ---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~  488 (635)
                         +.......+.|.|.++++++.|.+|+.|++.++.++.++.+|...|..+.+  ++.++++++.|.++++|-+.++++
T Consensus       190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~  269 (406)
T KOG0295|consen  190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC  269 (406)
T ss_pred             cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh
Confidence               334445567889999999999999999999999999999999999998888  567999999999999999999998


Q ss_pred             eEEecCCCcccccEEEEEec------------C-----CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccC
Q psy18018        489 LQTLSGRNKHQSAVTCLQFN------------S-----RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ  551 (635)
Q Consensus       489 ~~~~~~~~~~~~~v~~~~~~------------~-----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (635)
                      ...+..   |..+|.|++|-            +     .++.+++.|++|++||+.++.++.++.+           |..
T Consensus       270 k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-----------hdn  335 (406)
T KOG0295|consen  270 KAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-----------HDN  335 (406)
T ss_pred             hhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-----------ccc
Confidence            888888   88889888881            2     5999999999999999999998888776           788


Q ss_pred             ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      .|..++|+|.|+||+++.+|+++++||+++++++..+     .+|..-++++.|..+..++++|+-|-+  +++|.
T Consensus       336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-----~ah~hfvt~lDfh~~~p~VvTGsVdqt--~KvwE  404 (406)
T KOG0295|consen  336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-----EAHEHFVTSLDFHKTAPYVVTGSVDQT--VKVWE  404 (406)
T ss_pred             eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc-----CCCcceeEEEecCCCCceEEeccccce--eeeee
Confidence            9999999999999999999999999999999999999     578899999999999999999999998  66663

>KOG1063|consensus

Probab=100.00  E-value=2.4e-32  Score=251.91  Aligned_cols=541  Identities=19%  Similarity=0.236  Sum_probs=355.6

Q ss_pred             cchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC---EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcE
Q psy18018         50 PWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS---RIVSGSDDNTLKVWSATTGKCLLVSGSRDATL  124 (635)
Q Consensus        50 ~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~---~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i  124 (635)
                      +.+.+.++.+..+.+||......+..++||..+| +|+.+-  .+   ++++|+.|+.|++|.++..             
T Consensus        24 ~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~V-nC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~-------------   89 (764)
T KOG1063|consen   24 PGGLVAFGAGPAIAVADPEKILIVTTLDGHVARV-NCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE-------------   89 (764)
T ss_pred             ccceEEecCCceEEEeCcccceeEEeccCCccce-EEEEEcccccccceEEEccCCCcEEEEEEeeh-------------
Confidence            3444555567777789988776778899999999 999996  22   6888988888888887621             


Q ss_pred             EEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCcc--ceeeccc--cceeEEeeeccC--C-CEEE
Q psy18018        125 RVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEE--CLHAELQ--ETEVELSHGYAL--R-SRIV  197 (635)
Q Consensus       125 ~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~--~~~~~~~~~~~~--~-~~l~  197 (635)
                            .-.++..+.+|...+.|+.-....+...+.|+++.+||.+..+  ++..+..  ...+..+....+  + -.++
T Consensus        90 ------~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla  163 (764)
T KOG1063|consen   90 ------YLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA  163 (764)
T ss_pred             ------heEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE
Confidence                  1245677778777766665433333334789999999995555  1111111  111222222222  2 2456


Q ss_pred             EEeCCCcEEEEECCC--CeEEEEEeCCCCCeEEEEee-----CCEEEEeeCceeEEEecccceeeecccccccc--Cccc
Q psy18018        198 SGSDDNTLKVWSATT--GKCLRTLIGHTGGVWSSQMA-----GNIIISGSTDRTLKGWSNAERILAIGQLIDSC--EPTQ  268 (635)
Q Consensus       198 ~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~--~~~~  268 (635)
                      .|+.+..|.++.-..  .+.+..+.||.+.|.+++|.     .-+|+++|+|..||+|.+.-............  ....
T Consensus       164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~  243 (764)
T KOG1063|consen  164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN  243 (764)
T ss_pred             ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC
Confidence            677777777776443  35677889999999999993     34789999999999998764432110000000  0000


Q ss_pred             eeeeeeeeccccccceee-ccccceeeEEEeecCchhhHhhcccccceeEeecCC--cchhhhhhhhhhhccccccCCCc
Q psy18018        269 IRHMMQLIEPQFQRDFIS-LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN--LLWREKCLEAATLHRNKKTHVPD  345 (635)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  345 (635)
                      ...........+.-.+-. ....+.-++.+.+.|....+..+++....-+..++.  .+|....+-....   .......
T Consensus       244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g---g~a~GF~  320 (764)
T KOG1063|consen  244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG---GSAGGFW  320 (764)
T ss_pred             CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc---cccccee
Confidence            000000011111111112 236677888899999985444444333333333222  2454332211111   1111223


Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCC---ceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      ..-|+|+++.+++-+..|..++|.....   .+...+.+|...|..++|+  +++|++.+.|.+-|++-.-..+.. -..
T Consensus       321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-wHE  399 (764)
T KOG1063|consen  321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-WHE  399 (764)
T ss_pred             eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc-eee
Confidence            4558899999999999999999994332   2344567999999999998  889999999999999866522111 111


Q ss_pred             --------------EEeeCCcEEEEEeCCCcEEEEeCCC-----------------------------------------
Q psy18018        421 --------------ICLFDGVHVVSGSLDTSIRVWEAES-----------------------------------------  445 (635)
Q Consensus       421 --------------~~~~~~~~l~~~~~d~~i~~~d~~~-----------------------------------------  445 (635)
                                    .+-+....+++|..+..+|+|+...                                         
T Consensus       400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~  479 (764)
T KOG1063|consen  400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET  479 (764)
T ss_pred             ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence                          1222355677777777778775431                                         


Q ss_pred             --Cc---------------------------------eeeeeccCCccEEEEEec--CCEEEEEeCCC-----cEEEEEC
Q psy18018        446 --GN---------------------------------LRHTLMGHQSLTSGMELR--NNILVSGNADS-----TVKVWDI  483 (635)
Q Consensus       446 --~~---------------------------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-----~i~iwd~  483 (635)
                        |.                                 .++++-||.-.|.+++.+  ++++|+++...     .|++|+.
T Consensus       480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t  559 (764)
T KOG1063|consen  480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT  559 (764)
T ss_pred             ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec
Confidence              00                                 112345788889988876  77999998654     4999999


Q ss_pred             CCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018        484 VSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  561 (635)
                      .+....+.+.+   |.-.|+.++|  |+++|++++.|.++.+|......... +.      -.....|+.-|....|+|+
T Consensus       560 ~~W~~~~~L~~---HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~------fa~~k~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  560 ANWLQVQELEG---HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FR------FACLKAHTRIIWDCSWSPD  629 (764)
T ss_pred             cchhhhheecc---cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hh------hccccccceEEEEcccCcc
Confidence            99888888888   9999999999  79999999999999999986443211 11      0113458889999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCC--ceEEeeeeccCCCCCceEEEEEeCC-----CCeEEEEccCCCeeEeEEEEEe
Q psy18018        562 SRFVITSSDDGTVKLWDVKTG--EFIRNLVSLDSGGSGGVVWRIRASE-----TKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       562 ~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~-----d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +.++||++.|.+|+||.....  +.+..+..   ..++..|+++++.|     .+..+++|-+.|.  +.||.++
T Consensus       630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~---~~~~~aVTAv~~~~~~~~e~~~~vavGle~Ge--I~l~~~~  699 (764)
T KOG1063|consen  630 EKYFATASRDKKVKVWEEPDLRDKYISRFAC---LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGE--IVLWRRK  699 (764)
T ss_pred             cceeEEecCCceEEEEeccCchhhhhhhhch---hccCCceeeEEeeccccccccceEEEEecccE--EEEEecc
Confidence            999999999999999999887  55544322   46788999999976     2338899999997  4444443

>KOG0265|consensus

Probab=100.00  E-value=3.5e-34  Score=237.39  Aligned_cols=284  Identities=24%  Similarity=0.386  Sum_probs=234.1

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeec-CCCCCCceeeccCcceEEEEEEc--CCEEE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRT-RPIKDPKVLKGHDDHVITCLQFS--GSRIV   95 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~-~~~~~~~~l~~h~~~vi~~~~~s--~~~l~   95 (635)
                      -.|.||.+.| .++.|+    |+|.++|+++.|+.+.        +|++ ...+-...+++|.+.| +.+.|.  ++.|+
T Consensus        41 m~l~gh~geI-~~~~F~----P~gs~~aSgG~Dr~I~--------LWnv~gdceN~~~lkgHsgAV-M~l~~~~d~s~i~  106 (338)
T KOG0265|consen   41 MLLPGHKGEI-YTIKFH----PDGSCFASGGSDRAIV--------LWNVYGDCENFWVLKGHSGAV-MELHGMRDGSHIL  106 (338)
T ss_pred             hhcCCCcceE-EEEEEC----CCCCeEeecCCcceEE--------EEeccccccceeeecccccee-EeeeeccCCCEEE
Confidence            4677999988 899999    9999999999766554        6994 4556677899999998 899999  99999


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      ++|.|.+|+.||.+                     +|+.++.+++|..-|+++..   ...++.|++.||++++||.+..
T Consensus       107 S~gtDk~v~~wD~~---------------------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen  107 SCGTDKTVRGWDAE---------------------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             EecCCceEEEEecc---------------------cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            99999998888876                     45678889999999999988   5668889999999999999999


Q ss_pred             cceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecc
Q psy18018        173 ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSN  250 (635)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~  250 (635)
                      +.++.+....+.....+...++.+++|+-|+.|++||++.+..+.++.||.++|+.+..  +|.++.+-+.|.++++||+
T Consensus       166 ~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  166 EAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             chhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            98888877777777777777899999999999999999999999999999999999988  5899999999999999997


Q ss_pred             cceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhh
Q psy18018        251 AERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL  330 (635)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (635)
                      +.....                                  +..+..+.                                
T Consensus       246 rp~~p~----------------------------------~R~v~if~--------------------------------  259 (338)
T KOG0265|consen  246 RPFAPS----------------------------------QRCVKIFQ--------------------------------  259 (338)
T ss_pred             cccCCC----------------------------------CceEEEee--------------------------------
Confidence            652110                                  00000000                                


Q ss_pred             hhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEE
Q psy18018        331 EAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKV  407 (635)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~i  407 (635)
                          ..........--.+++|+++.+-+|+.|..+++||......+..+.+|.+.|.++.|.  ..++.+++.|++|.+
T Consensus       260 ----g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  260 ----GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ----cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence                0000001111224689999999999999999999999999999999999999999998  568888888888765

>KOG0263|consensus

Probab=100.00  E-value=2.4e-34  Score=269.93  Aligned_cols=302  Identities=23%  Similarity=0.449  Sum_probs=246.9

Q ss_pred             EEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCC
Q psy18018        136 HVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG  213 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  213 (635)
                      .++..-...++|..|  |+..||.|-.|..|++|.+...+ +..+.....         -..+=+.+.|-.+.+.|-.+.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~---------l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASD---------LSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhh---------hccccccccchhhhhccccCC
Confidence            344444567889999  78899999999999999988653 222211111         111223344555677777777


Q ss_pred             eEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccccee
Q psy18018        214 KCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELA  293 (635)
Q Consensus       214 ~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (635)
                      ...+++.||.++|....                                                               
T Consensus       442 ~~~~~L~GH~GPVyg~s---------------------------------------------------------------  458 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCS---------------------------------------------------------------  458 (707)
T ss_pred             ceeEEeecCCCceeeee---------------------------------------------------------------
Confidence            77788999999998766                                                               


Q ss_pred             eEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC
Q psy18018        294 LYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG  373 (635)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  373 (635)
                                                                             |+|+.++|+++++|+++|+|.+.+.
T Consensus       459 -------------------------------------------------------FsPd~rfLlScSED~svRLWsl~t~  483 (707)
T KOG0263|consen  459 -------------------------------------------------------FSPDRRFLLSCSEDSSVRLWSLDTW  483 (707)
T ss_pred             -------------------------------------------------------ecccccceeeccCCcceeeeecccc
Confidence                                                                   7888899999999999999999999


Q ss_pred             ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec
Q psy18018        374 NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  453 (635)
Q Consensus       374 ~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  453 (635)
                      .++..+++|..+|..+.|+                               |.|-++++++.|++.++|......+.+.+.
T Consensus       484 s~~V~y~GH~~PVwdV~F~-------------------------------P~GyYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  484 SCLVIYKGHLAPVWDVQFA-------------------------------PRGYYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             eeEEEecCCCcceeeEEec-------------------------------CCceEEEecCCCceeeeeecccCCchhhhc
Confidence            9999999999999888875                               667788888888889999998899999999


Q ss_pred             cCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018        454 GHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG  529 (635)
Q Consensus       454 ~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~  529 (635)
                      +|.+.|.|+.|+++  ++++|+.|.++++||..+|..++.+.+   |..+|++++|  +|++|++|+.||.|++||+.++
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence            99999999998654  999999999999999999999999998   9999999999  6999999999999999999999


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce------------------------E
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF------------------------I  585 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~------------------------~  585 (635)
                      ..+..+..           |.+.|.++.||.||..||+|+.|++|++||+..-..                        +
T Consensus       610 ~~v~~l~~-----------Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  678 (707)
T KOG0263|consen  610 SLVKQLKG-----------HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLL  678 (707)
T ss_pred             cchhhhhc-----------ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCccee
Confidence            98888876           688999999999999999999999999999864322                        2


Q ss_pred             EeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        586 RNLVSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       586 ~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                      ..+     ..-..+|..|.|......|++|
T Consensus       679 gs~-----~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  679 GSF-----YTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             eee-----eecCceEEEEEEeccceeEEec
Confidence            233     2335578888888766555554

>KOG1063|consensus

Probab=100.00  E-value=9.6e-32  Score=247.93  Aligned_cols=510  Identities=18%  Similarity=0.302  Sum_probs=353.8

Q ss_pred             CccccccccceEEEEEecCCCCCCCc---eeecCCcchheeeccceeeeeeecCC--CCCCceeeccCcceEEEEEEc--
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCES---FIRSSSPWKALFMSHRSVEINWRTRP--IKDPKVLKGHDDHVITCLQFS--   90 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~---~la~~~~~~~~~~~~~~~~~iwd~~~--~~~~~~l~~h~~~vi~~~~~s--   90 (635)
                      ...|.||..+| +|+.+-    |+.+   ++.+|+.        |+.+++|..+.  ...+..+++|..   .|+++.  
T Consensus        47 ~t~l~GH~a~V-nC~~~l----~~s~~~a~~vsG~s--------D~~v~lW~l~~~~~~~i~~~~g~~~---~~~cv~a~  110 (764)
T KOG1063|consen   47 VTTLDGHVARV-NCVHWL----PTSEIVAEMVSGDS--------DGRVILWKLRDEYLIKIYTIQGHCK---ECVCVVAR  110 (764)
T ss_pred             EEeccCCccce-EEEEEc----ccccccceEEEccC--------CCcEEEEEEeehheEEEEeecCcce---eEEEEEee
Confidence            37889999999 999999    6666   6777765        45555798873  344566778665   455555  


Q ss_pred             CCEEEEeeCCCcEEEEECCCCc---------------------------EEEEEeeCCCcEEEEeCCCC--eEEEEeeCC
Q psy18018         91 GSRIVSGSDDNTLKVWSATTGK---------------------------CLLVSGSRDATLRVWHIESG--ECLHVLVGH  141 (635)
Q Consensus        91 ~~~l~s~~~d~~v~vWd~~~~~---------------------------~ll~~~~~dg~i~vwd~~~~--~~~~~l~~h  141 (635)
                      .........|+.+.+||.+..+                           .+++.|+.+..|.++.-.+.  +.+..+.||
T Consensus       111 ~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH  190 (764)
T KOG1063|consen  111 SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGH  190 (764)
T ss_pred             eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeecc
Confidence            2222233789999999995544                           12888888888988876533  567889999


Q ss_pred             CcceEEEEe-----cCCEEEEEeCCCeEEEEeCCCccce------------------------e-------eccccceeE
Q psy18018        142 LAAVRCVQY-----DGKLVVSGAYDYMVKIWNPDTEECL------------------------H-------AELQETEVE  185 (635)
Q Consensus       142 ~~~v~~l~~-----~~~~l~s~~~dg~v~iwd~~~~~~~------------------------~-------~~~~~~~~~  185 (635)
                      ...|.+|+|     +.-+|||+|.|..||||.+.-+...                        .       -+.+|..-+
T Consensus       191 ~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV  270 (764)
T KOG1063|consen  191 TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV  270 (764)
T ss_pred             chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence            999999999     3558999999999999986533200                        0       012344444


Q ss_pred             EeeeccCC-CEEEEEeCCCcEEEEECCCCe--EE-----EEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceee
Q psy18018        186 LSHGYALR-SRIVSGSDDNTLKVWSATTGK--CL-----RTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERIL  255 (635)
Q Consensus       186 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~-----~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~  255 (635)
                      .+..+.+. -.|++++.|.++.+|...+..  -+     ....+..+..+...|+  ++.+++-+.-|..++|.-.+...
T Consensus       271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~  350 (764)
T KOG1063|consen  271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF  350 (764)
T ss_pred             EEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence            44444444 489999999999999876542  21     2223445567777774  66799999999999997222110


Q ss_pred             eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhh
Q psy18018        256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATL  335 (635)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (635)
                                                                                           |...      .
T Consensus       351 ---------------------------------------------------------------------w~~~------~  355 (764)
T KOG1063|consen  351 ---------------------------------------------------------------------WTQE------P  355 (764)
T ss_pred             ---------------------------------------------------------------------eeec------c
Confidence                                                                                 0000      0


Q ss_pred             ccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc----eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEE
Q psy18018        336 HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN----LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWD  409 (635)
Q Consensus       336 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd  409 (635)
                      ....+.....-++++|.|.+|++.+.|.+-|+|-.-..+    .+..-+-|...++|+++-  +-.+++|...+.+|+|+
T Consensus       356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~  435 (764)
T KOG1063|consen  356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE  435 (764)
T ss_pred             ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence            011122344557789999999999999999998754111    122234566778888874  45777888888899997


Q ss_pred             ccCC-------------------------------------------c--------------------------------
Q psy18018        410 IVSG-------------------------------------------T--------------------------------  414 (635)
Q Consensus       410 ~~~~-------------------------------------------~--------------------------------  414 (635)
                      ....                                           .                                
T Consensus       436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw  515 (764)
T KOG1063|consen  436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW  515 (764)
T ss_pred             CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence            5321                                           0                                


Q ss_pred             ----------ceeEEEEEeeCCcEEEEEeCCC-----cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCc
Q psy18018        415 ----------KKLMFRICLFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADST  477 (635)
Q Consensus       415 ----------~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~  477 (635)
                                ........+|+++.++++....     .|++|+..+....+.+.+|.-.|+.+.|  ++++|++++.|++
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence                      0000012567888999887543     5999999999999999999999999888  5779999999999


Q ss_pred             EEEEECCCCcee-EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC--ceeeeeccceecCceeEEeccCc
Q psy18018        478 VKVWDIVSGQCL-QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG--EFSTPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       478 i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      +.+|........ ..+.....|...|.+..|  ++.+++|+|.|.+|++|.....  +.+..+         ....++..
T Consensus       596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~---------a~~~~~~a  666 (764)
T KOG1063|consen  596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF---------ACLKFSLA  666 (764)
T ss_pred             EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh---------chhccCCc
Confidence            999987543221 122223458889999998  6888999999999999999887  333222         23347888


Q ss_pred             eecccccCC-----CeEEEEecCCCeEEEEeCCC-------CceEEeeeeccCCCCCceEEEEEeCCC----------Ce
Q psy18018        553 LLCPHLQFN-----SRFVITSSDDGTVKLWDVKT-------GEFIRNLVSLDSGGSGGVVWRIRASET----------KL  610 (635)
Q Consensus       553 v~~~~~s~~-----~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~~~~~~i~~l~~s~d----------~~  610 (635)
                      |+.+++.|-     +..++.|-+.|.|.+|..+.       +..-.........++.+.|..+.|+|.          ..
T Consensus       667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l  746 (764)
T KOG1063|consen  667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWL  746 (764)
T ss_pred             eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccccee
Confidence            998888772     23778899999999999651       111111111122467889999999975          24


Q ss_pred             EEEEccCCCeeEeEEEEEe
Q psy18018        611 VCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       611 ~l~~~~~dg~~~~~l~~~d  629 (635)
                      .|++|++|..  ++++.++
T Consensus       747 ~la~~g~D~~--vri~nv~  763 (764)
T KOG1063|consen  747 NLAVGGDDES--VRIFNVD  763 (764)
T ss_pred             EEeeecccce--eEEeecc
Confidence            5699999988  7777765

>KOG0284|consensus

Probab=100.00  E-value=4.4e-35  Score=252.79  Aligned_cols=271  Identities=22%  Similarity=0.384  Sum_probs=239.6

Q ss_pred             ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCc-
Q psy18018        338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGT-  414 (635)
Q Consensus       338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-  414 (635)
                      .+..+.+..+.+.|+|++|++|+..|.+.+|+..+-.....++.|.++|.++.|+  +..+++|..+|.|+.|+.+-.. 
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence            3445677789999999999999999999999986555555678999999999997  7899999999999999876442 


Q ss_pred             --------ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCCCcEEEEECC
Q psy18018        415 --------KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIV  484 (635)
Q Consensus       415 --------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~  484 (635)
                              .......++|++..+++++.||+|++||....+....+.+|.-.|.++.|++.  ++++++.|..|++||.+
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence                    23334468999999999999999999999999998999999999999999865  99999999999999999


Q ss_pred             CCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-C
Q psy18018        485 SGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-N  561 (635)
Q Consensus       485 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~  561 (635)
                      +++++..+..   |...|..+.|  ++++|+++|.|..++++|+++-+.+..+++           |...+++++|+| .
T Consensus       253 Sg~cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-----------Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  253 SGSCLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-----------HKKDVTSLTWHPLN  318 (464)
T ss_pred             Ccchhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-----------chhhheeecccccc
Confidence            9999999988   9999999999  689999999999999999997776666665           788999999999 5


Q ss_pred             CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        562 SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       562 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      ..+|.+|+.||.|..|.+...+.+..+.    .+|...|++|+|.|=|.+|++|+.|.+  +++|.-
T Consensus       319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~----~AHd~~iwsl~~hPlGhil~tgsnd~t--~rfw~r  379 (464)
T KOG0284|consen  319 ESLFTSGGSDGSVVHWVVGLEEPLGEIP----PAHDGEIWSLAYHPLGHILATGSNDRT--VRFWTR  379 (464)
T ss_pred             ccceeeccCCCceEEEeccccccccCCC----cccccceeeeeccccceeEeecCCCcc--eeeecc
Confidence            6688899999999999998777776664    689999999999999999999999998  777764

>KOG2048|consensus

Probab=100.00  E-value=6.3e-31  Score=242.18  Aligned_cols=460  Identities=16%  Similarity=0.194  Sum_probs=311.6

Q ss_pred             cceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC-CCCceeeccCcceEEEEEEc-CCEEEEeeCCCcE
Q psy18018         26 DHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI-KDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTL  103 (635)
Q Consensus        26 ~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~-~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v  103 (635)
                      ..| +|||||    .+.+-||.+..+        +.+-||++.+. -+...+.||+++-|.+++|+ +.+|.+.+.+|+|
T Consensus        26 s~I-~slA~s----~kS~~lAvsRt~--------g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i   92 (691)
T KOG2048|consen   26 SEI-VSLAYS----HKSNQLAVSRTD--------GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSI   92 (691)
T ss_pred             cce-EEEEEe----ccCCceeeeccC--------CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceE
Confidence            344 899999    677779988864        33445999864 45577899999888999999 9999999999999


Q ss_pred             EEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCCeEE--EEeeCCCcceEEEEe--cCCEEEEE
Q psy18018        104 KVWSATTGKCL---------------------LVSGSRDATLRVWHIESGECL--HVLVGHLAAVRCVQY--DGKLVVSG  158 (635)
Q Consensus       104 ~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~~~~--~~l~~h~~~v~~l~~--~~~~l~s~  158 (635)
                      .-||+.+++++                     ++.|+.||.+...+...++..  ..|...+++|.+++|  ++..+++|
T Consensus        93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen   93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence            99999998886                     899999998888888777654  355566799999999  78889999


Q ss_pred             eCCCeEEEEeCCCccceee-------ccc-cceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEE
Q psy18018        159 AYDYMVKIWNPDTEECLHA-------ELQ-ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ  230 (635)
Q Consensus       159 ~~dg~v~iwd~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  230 (635)
                      +.||.|++||...+..++.       +.. ....+.+..+-..+.+++|...|+|.+||...+.+++.+..|.+.|.+++
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA  252 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence            9999999999999987762       222 34456666677889999999999999999999999999999999999998


Q ss_pred             ee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        231 MA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       231 ~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      .+  +++++++|.|+.+..+...+..-                                                     
T Consensus       253 v~~~~d~vfsaGvd~~ii~~~~~~~~~-----------------------------------------------------  279 (691)
T KOG2048|consen  253 VADNEDRVFSAGVDPKIIQYSLTTNKS-----------------------------------------------------  279 (691)
T ss_pred             EcCCCCeEEEccCCCceEEEEecCCcc-----------------------------------------------------
Confidence            74  57888888888776665433210                                                     


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                                                                           +     |-.     ......|...+.+
T Consensus       280 -----------------------------------------------------~-----wv~-----~~~r~~h~hdvrs  296 (691)
T KOG2048|consen  280 -----------------------------------------------------E-----WVI-----NSRRDLHAHDVRS  296 (691)
T ss_pred             -----------------------------------------------------c-----eee-----eccccCCccccee
Confidence                                                                 0     111     1112334455555


Q ss_pred             EEEeCCEEEEEeCCCcEEEEEccCCcce-eEEEEEeeC--------CcEEEEEeCCCcEEEEeCCCCc---------eee
Q psy18018        389 MELRNNILVSGNADSTVKVWDIVSGTKK-LMFRICLFD--------GVHVVSGSLDTSIRVWEAESGN---------LRH  450 (635)
Q Consensus       389 l~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~--------~~~l~~~~~d~~i~~~d~~~~~---------~~~  450 (635)
                      ++..+..+++|+.|..+.+-.....+.. .......|.        .++|..--.+..+.+|.+-+..         +.+
T Consensus       297 ~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llk  376 (691)
T KOG2048|consen  297 MAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLK  376 (691)
T ss_pred             eeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhhee
Confidence            5555555556666555554433221000 001111111        1222222233334444443321         111


Q ss_pred             -eeccCCc-cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEec--CCCcccccEEEEEe--cCCEEEEEe-CCCcEEE
Q psy18018        451 -TLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS--GRNKHQSAVTCLQF--NSRFVITSS-DDGTVKL  523 (635)
Q Consensus       451 -~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~v  523 (635)
                       .++.++. ...+++++|++++.+.- ...++|.+.....+....  ...........+.|  +++.++.++ .+..+.+
T Consensus       377 l~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~  455 (691)
T KOG2048|consen  377 LFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEE  455 (691)
T ss_pred             eecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEE
Confidence             1222322 33456678888887764 357888876532222222  11112233445555  677777666 7788888


Q ss_pred             EECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEE
Q psy18018        524 WDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRI  603 (635)
Q Consensus       524 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l  603 (635)
                      +++.+..........       .......|..+..||||+|||+.+.+|.|.+|++++++.-...     ...+..++++
T Consensus       456 ~el~~ps~kel~~~~-------~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-----~rln~~vTa~  523 (691)
T KOG2048|consen  456 FELETPSFKELKSIQ-------SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-----VRLNIDVTAA  523 (691)
T ss_pred             EEecCcchhhhhccc-------cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-----hccCcceeee
Confidence            888776533222111       1124568999999999999999999999999999988765444     2345789999


Q ss_pred             EeCC-CCeEEEEccCCCeeEeEEEEEeee
Q psy18018        604 RASE-TKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       604 ~~s~-d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +|+| +-..|+++..|+.    +|.+|.+
T Consensus       524 ~~~~~~~~~lvvats~nQ----v~efdi~  548 (691)
T KOG2048|consen  524 AFSPFVRNRLVVATSNNQ----VFEFDIE  548 (691)
T ss_pred             eccccccCcEEEEecCCe----EEEEecc
Confidence            9995 5568888888886    8888874

>KOG0645|consensus

Probab=100.00  E-value=1.7e-32  Score=224.07  Aligned_cols=293  Identities=24%  Similarity=0.383  Sum_probs=219.7

Q ss_pred             CCceeeccCcceEEEEEEc-C--CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee-CCCcceEE
Q psy18018         72 DPKVLKGHDDHVITCLQFS-G--SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV-GHLAAVRC  147 (635)
Q Consensus        72 ~~~~l~~h~~~vi~~~~~s-~--~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~-~h~~~v~~  147 (635)
                      .++.+++|.+++ ..++|+ +  ..|||+|.|+.|++|+...+.                  +-.+...+. +|+..|++
T Consensus         6 ~~~~~~gh~~r~-W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------s~~ck~vld~~hkrsVRs   66 (312)
T KOG0645|consen    6 LEQKLSGHKDRV-WSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------SWTCKTVLDDGHKRSVRS   66 (312)
T ss_pred             eEEeecCCCCcE-EEEEeccCCceEEEeecCCceEEEEecCCCC------------------cEEEEEeccccchheeee
Confidence            457789999998 899999 4  489999999999999987543                  223444443 79999999


Q ss_pred             EEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        148 VQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       148 l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                      ++|  .|++||++|.|.++.||.-..                                       ...+++.+++||...
T Consensus        67 vAwsp~g~~La~aSFD~t~~Iw~k~~---------------------------------------~efecv~~lEGHEnE  107 (312)
T KOG0645|consen   67 VAWSPHGRYLASASFDATVVIWKKED---------------------------------------GEFECVATLEGHENE  107 (312)
T ss_pred             eeecCCCcEEEEeeccceEEEeecCC---------------------------------------CceeEEeeeeccccc
Confidence            999  899999999999999996332                                       234667889999999


Q ss_pred             eEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018        226 VWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE  303 (635)
Q Consensus       226 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (635)
                      |.+++|+  |++|++++.|+++-+|...+.                                                  
T Consensus       108 VK~Vaws~sG~~LATCSRDKSVWiWe~ded--------------------------------------------------  137 (312)
T KOG0645|consen  108 VKCVAWSASGNYLATCSRDKSVWIWEIDED--------------------------------------------------  137 (312)
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEEecCC--------------------------------------------------
Confidence            9998862  555555555555555542210                                                  


Q ss_pred             hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018        304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  383 (635)
                                                                                         ..-++...++.|.
T Consensus       138 -------------------------------------------------------------------dEfec~aVL~~Ht  150 (312)
T KOG0645|consen  138 -------------------------------------------------------------------DEFECIAVLQEHT  150 (312)
T ss_pred             -------------------------------------------------------------------CcEEEEeeecccc
Confidence                                                                               0124566788999


Q ss_pred             cceeEEEEeC--CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEE
Q psy18018        384 SLTSGMELRN--NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  461 (635)
Q Consensus       384 ~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  461 (635)
                      ..|..+.|++  ++|++++.|.+|++|+-..                              -....+.+++.+|.+.|.+
T Consensus       151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------------------------------dddW~c~~tl~g~~~TVW~  200 (312)
T KOG0645|consen  151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------------------------------DDDWECVQTLDGHENTVWS  200 (312)
T ss_pred             ccccEEEEcCCcceeEEeccCCeEEEEeecC------------------------------CCCeeEEEEecCccceEEE
Confidence            9999999985  6777777777777665431                              1235678899999999999


Q ss_pred             EEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018        462 MELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF  539 (635)
Q Consensus       462 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  539 (635)
                      ++|+  |..|+++++|++++||...+     .+.  ..|...+..++|+...+++++.|+.|++|.....-....+.   
T Consensus       201 ~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~--~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~---  270 (312)
T KOG0645|consen  201 LAFDNIGSRLVSCSDDGTVSIWRLYT-----DLS--GMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWN---  270 (312)
T ss_pred             EEecCCCceEEEecCCcceEeeeecc-----Ccc--hhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHH---
Confidence            9985  56999999999999998652     222  12778899999998899999999999999876431111111   


Q ss_pred             ecCceeEEeccCceecccccCC-CeEEEEecCCCeEEEEeCC
Q psy18018        540 ILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~v~iwd~~  580 (635)
                       .-......|...|++++|.|. ...|++++.||.|++|.+.
T Consensus       271 -l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  271 -LLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             -HHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence             011123358889999999995 7799999999999999875

>KOG2106|consensus

Probab=100.00  E-value=1.5e-31  Score=237.36  Aligned_cols=437  Identities=16%  Similarity=0.242  Sum_probs=312.5

Q ss_pred             eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEE
Q psy18018          7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITC   86 (635)
Q Consensus         7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~   86 (635)
                      .+.|+...+..+..|-+-+..| +|+|||+-  ..|.+|+..+.      +.+++..+||.+.++.....+.-.+.+ ..
T Consensus       136 vriWdsv~L~TL~V~g~f~~GV-~~vaFsk~--~~G~~l~~vD~------s~~h~lSVWdWqk~~~~~~vk~sne~v-~~  205 (626)
T KOG2106|consen  136 VRIWDSVTLSTLHVIGFFDRGV-TCVAFSKI--NGGSLLCAVDD------SNPHMLSVWDWQKKAKLGPVKTSNEVV-FL  205 (626)
T ss_pred             eeecccccceeeeeeccccccc-eeeeeccc--CCCceEEEecC------CCccccchhhchhhhccCcceeccceE-EE
Confidence            4679988888888887666667 99999954  67888887765      467888899999988887777766655 78


Q ss_pred             EEEc---CCEEEEeeCCCcEEEEECCCCcEE------------------------EEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018         87 LQFS---GSRIVSGSDDNTLKVWSATTGKCL------------------------LVSGSRDATLRVWHIESGECLHVLV  139 (635)
Q Consensus        87 ~~~s---~~~l~s~~~d~~v~vWd~~~~~~l------------------------l~~~~~dg~i~vwd~~~~~~~~~l~  139 (635)
                      .+|.   .+++++.+ .+.+.+|+.+.+...                        +++|.++|.|.||+..+.+..+...
T Consensus       206 a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~  284 (626)
T KOG2106|consen  206 ATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH  284 (626)
T ss_pred             EEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee
Confidence            9998   66666666 578999999876553                        8999999999999999888888777


Q ss_pred             CCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeecccc--ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE
Q psy18018        140 GHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQE--TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL  216 (635)
Q Consensus       140 ~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  216 (635)
                      .|.+.|.+++. ....|+||+.|+.|..|| +.-+.++....+  ...+.... +...-+++|+..+.|..=.++.+-.+
T Consensus       285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~-e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA-EGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEe-cCCCcEEEeeccceEEEeeecCCceE
Confidence            99999999999 444566699999999999 333333322222  12222222 22223888888888877777665544


Q ss_pred             EEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceee
Q psy18018        217 RTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELAL  294 (635)
Q Consensus       217 ~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (635)
                      . ..+|....+.++.  +.+.++|++.|+.+++|+  ..++...                                    
T Consensus       363 ~-v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt------------------------------------  403 (626)
T KOG2106|consen  363 T-VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT------------------------------------  403 (626)
T ss_pred             E-EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE------------------------------------
Confidence            3 3579999999887  478999999999999999  2222111                                    


Q ss_pred             EEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc
Q psy18018        295 YVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN  374 (635)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~  374 (635)
                                                                 ........+.+|+|.| .++.|+..|...+.|.++..
T Consensus       404 -------------------------------------------~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  404 -------------------------------------------KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             -------------------------------------------EEecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence                                                       1122445567799999 99999999999999999866


Q ss_pred             eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc-eeeeec
Q psy18018        375 LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN-LRHTLM  453 (635)
Q Consensus       375 ~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~  453 (635)
                      .+..-.. ..++++++++                               |+|.+|+.|+.|+.|++|.+..+. ......
T Consensus       440 lv~~~~d-~~~ls~v~ys-------------------------------p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  440 LVTIHTD-NEQLSVVRYS-------------------------------PDGAFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             eEEEEec-CCceEEEEEc-------------------------------CCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            6554444 7788888876                               555566666666666666554432 222221


Q ss_pred             -cCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecC---------------CCcccccEEEEEe--cCCEEE
Q psy18018        454 -GHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSG---------------RNKHQSAVTCLQF--NSRFVI  513 (635)
Q Consensus       454 -~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~v~~~~~--~~~~l~  513 (635)
                       .+.++++.+.|  +++++.+-+.|-.|..|....-+.+...+.               ...+...|..++-  +.+++|
T Consensus       488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA  567 (626)
T KOG2106|consen  488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLA  567 (626)
T ss_pred             eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhh
Confidence             23378888888  577999999999999995443222211111               0112233333333  578999


Q ss_pred             EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      +|.+.|+|++|...--+...        ....+..|+..|++++|..+...+++.+.|..|..|++
T Consensus       568 ~gdd~g~v~lf~yPc~s~rA--------~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  568 SGDDFGKVHLFSYPCSSPRA--------PSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccccCceEEEEccccCCCcc--------cceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            99999999999876443222        22345668999999999999998888889999999986

>KOG0292|consensus

Probab=100.00  E-value=2.4e-31  Score=251.89  Aligned_cols=460  Identities=21%  Similarity=0.265  Sum_probs=318.9

Q ss_pred             cccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEe
Q psy18018         20 VLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSG   97 (635)
Q Consensus        20 ~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~   97 (635)
                      .+..-+.+| ..++|.    |..-|+.++=-        .+++.+||.+=+.++.+|.+|.++| +.++|.  +.+++||
T Consensus         4 kfEskSsRv-KglsFH----P~rPwILtslH--------sG~IQlWDYRM~tli~rFdeHdGpV-Rgv~FH~~qplFVSG   69 (1202)
T KOG0292|consen    4 KFESKSSRV-KGLSFH----PKRPWILTSLH--------SGVIQLWDYRMGTLIDRFDEHDGPV-RGVDFHPTQPLFVSG   69 (1202)
T ss_pred             hhhcccccc-cceecC----CCCCEEEEeec--------CceeeeehhhhhhHHhhhhccCCcc-ceeeecCCCCeEEec
Confidence            344455677 899999    88899988764        5566679999999999999999999 999999  8899999


Q ss_pred             eCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccce
Q psy18018         98 SDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECL  175 (635)
Q Consensus        98 ~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~  175 (635)
                      |+|-.|+||+.+                     +.+++.+|.||-.-|..+.|  .-.+++|+|+|-+|||||.++++++
T Consensus        70 GDDykIkVWnYk---------------------~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i  128 (1202)
T KOG0292|consen   70 GDDYKIKVWNYK---------------------TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI  128 (1202)
T ss_pred             CCccEEEEEecc---------------------cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE
Confidence            999988888765                     56778899999999999999  6789999999999999999999999


Q ss_pred             eeccccceeEEeeeccC-CCEEEEEeCCCcEEEEECCC--------C-------------------e--EEEEEeCCCCC
Q psy18018        176 HAELQETEVELSHGYAL-RSRIVSGSDDNTLKVWSATT--------G-------------------K--CLRTLIGHTGG  225 (635)
Q Consensus       176 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~--------~-------------------~--~~~~~~~h~~~  225 (635)
                      ..+.+|...+.++.|.+ .+.+++++-|.+|++||+..        +                   .  ....+.||...
T Consensus       129 avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG  208 (1202)
T KOG0292|consen  129 AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG  208 (1202)
T ss_pred             EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence            99999988777777666 89999999999999999742        1                   0  12456899999


Q ss_pred             eEEEEeeC--CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018        226 VWSSQMAG--NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE  303 (635)
Q Consensus       226 v~~~~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (635)
                      |.-++|.+  ..+++|+.|..|++|.+...+.                                                
T Consensus       209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------------------------------------------------  240 (1202)
T KOG0292|consen  209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------------------------------------------------  240 (1202)
T ss_pred             cceEEecCCcceEEecCCcceeeEEEeccccc------------------------------------------------
Confidence            99999986  8999999999999998765321                                                


Q ss_pred             hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018        304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  383 (635)
                                 |....                 ...+.....++-|+|..+.+++.++|+.|++||+...+.+++++...
T Consensus       241 -----------WEvDt-----------------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren  292 (1202)
T KOG0292|consen  241 -----------WEVDT-----------------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN  292 (1202)
T ss_pred             -----------eeehh-----------------hhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC
Confidence                       11100                 11222344556689999999999999999999999999999999888


Q ss_pred             cceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce--eeeeccC---Cc
Q psy18018        384 SLTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL--RHTLMGH---QS  457 (635)
Q Consensus       384 ~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~---~~  457 (635)
                      +.-..++..+. .|+.++.|+-+.+|.++..++...     -+++.|...- |..|+.+|+.+.+-  +..++..   ..
T Consensus       293 dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~-----v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~  366 (1202)
T KOG0292|consen  293 DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYA-----VNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQ  366 (1202)
T ss_pred             CeEEEEEecCCcceeeeecCCceEEEEEcccCceEE-----EcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccC
Confidence            89999998843 566777787788888876554432     2444444443 89999999988543  3333332   24


Q ss_pred             cEEEEEecCC---EEEEEeCC-CcEEEEECCCCceeE-EecCCCcccccEEEEEecCCEEEEEeC-CCcEEEEECCCCce
Q psy18018        458 LTSGMELRNN---ILVSGNAD-STVKVWDIVSGQCLQ-TLSGRNKHQSAVTCLQFNSRFVITSSD-DGTVKLWDVKTGEF  531 (635)
Q Consensus       458 ~v~~~~~~~~---~l~s~~~d-g~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~~-d~~i~vwd~~~~~~  531 (635)
                      +..++++++.   .+++...| +.-.++.+....... .... ........++-...+.++.-.. +..+.+-++.+.. 
T Consensus       367 ~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~-~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~v-  444 (1202)
T KOG0292|consen  367 PPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD-VKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKV-  444 (1202)
T ss_pred             CcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh-hhcCCCCceEEEEecceEEEEecCcceEEecccchh-
Confidence            6777888653   44444444 444444443221000 0000 0011122222222222222222 4445444444322 


Q ss_pred             eeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeE
Q psy18018        532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLV  611 (635)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  611 (635)
                      .+.+..            ...+..+-+.-+|.+|+..  ...|.++|++.++.+.++.       -+.+.-+.||+|..+
T Consensus       445 tkkl~~------------~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~-------~s~vkyvvws~dm~~  503 (1202)
T KOG0292|consen  445 TKKLLL------------PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK-------VSKVKYVVWSNDMSR  503 (1202)
T ss_pred             hhcccC------------cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe-------cCceeEEEEcCccch
Confidence            111111            0111222233355555433  3458888888888777773       356788888888888


Q ss_pred             EEEccCCC
Q psy18018        612 CAVGSRNG  619 (635)
Q Consensus       612 l~~~~~dg  619 (635)
                      +|.-+...
T Consensus       504 vAll~Kh~  511 (1202)
T KOG0292|consen  504 VALLSKHT  511 (1202)
T ss_pred             hhhcccce
Confidence            77776655

>KOG0282|consensus

Probab=100.00  E-value=4.5e-35  Score=258.55  Aligned_cols=287  Identities=22%  Similarity=0.396  Sum_probs=245.6

Q ss_pred             CCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcce
Q psy18018         69 PIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAV  145 (635)
Q Consensus        69 ~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v  145 (635)
                      +.+.++.+.||+..| +++.|.   +.+|++++.|+.|+||++..                    .+++++++.+|..+|
T Consensus       203 Pkk~~~~~~gH~kgv-sai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~V  261 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGV-SAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPV  261 (503)
T ss_pred             cHhheeeccCCcccc-chhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhh
Confidence            446678899999998 999998   88999999999999999652                    468899999999999


Q ss_pred             EEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC-CEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy18018        146 RCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTLIGH  222 (635)
Q Consensus       146 ~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  222 (635)
                      ..++|  +|..+.|++.|+.+++||+++|+++..+.......+.-+.+++ +.+++|+.|+.|+.||+++++.++.+..|
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h  341 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH  341 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence            99999  8999999999999999999999999998888777777777776 88999999999999999999999999999


Q ss_pred             CCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018        223 TGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL  300 (635)
Q Consensus       223 ~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (635)
                      -+.|..+.|  .+.++++.+.|+++++|+........                                           
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-------------------------------------------  378 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-------------------------------------------  378 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-------------------------------------------
Confidence            999999999  58999999999999999976542211                                           


Q ss_pred             CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC---ceEE
Q psy18018        301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG---NLRH  377 (635)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~  377 (635)
                                                        .......+...++..+|++.++++-+.|..|.+|.+...   ...+
T Consensus       379 ----------------------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  379 ----------------------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             ----------------------------------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence                                              112234466778889999999999999999999996533   2334


Q ss_pred             eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc
Q psy18018        378 TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS  457 (635)
Q Consensus       378 ~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  457 (635)
                      .+.+|...=.++..                             -|||||.+|++|+.||.+.+||..+-+++..+++|..
T Consensus       425 ~feGh~vaGys~~v-----------------------------~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~  475 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQV-----------------------------DFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ  475 (503)
T ss_pred             hhcceeccCceeeE-----------------------------EEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence            56677643333322                             2679999999999999999999999999999999999


Q ss_pred             cEEEEEecC---CEEEEEeCCCcEEEEE
Q psy18018        458 LTSGMELRN---NILVSGNADSTVKVWD  482 (635)
Q Consensus       458 ~v~~~~~~~---~~l~s~~~dg~i~iwd  482 (635)
                      .+..+.|++   ..+|+++.||.|++|+
T Consensus       476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  476 PCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceEEEEecCCCcceeEecccCceeEecC
Confidence            999999964   5899999999999996

>KOG0645|consensus

Probab=100.00  E-value=3.4e-32  Score=222.31  Aligned_cols=280  Identities=28%  Similarity=0.459  Sum_probs=220.2

Q ss_pred             CCCCccccccccceEEEEEecCCCCCC-CceeecCCcchheeeccceeeeeeecCC---CCCCceee-ccCcceEEEEEE
Q psy18018         15 IKDPKVLKGHDDHVITCLQFSGKSFPC-ESFIRSSSPWKALFMSHRSVEINWRTRP---IKDPKVLK-GHDDHVITCLQF   89 (635)
Q Consensus        15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~-~~~la~~~~~~~~~~~~~~~~~iwd~~~---~~~~~~l~-~h~~~vi~~~~~   89 (635)
                      +...+.++||.+++ -.+||+    |. |..||+++.++.++        ||+...   ..+...|. +|+-.| +.+||
T Consensus         4 l~~~~~~~gh~~r~-W~~awh----p~~g~ilAscg~Dk~vr--------iw~~~~~~s~~ck~vld~~hkrsV-RsvAw   69 (312)
T KOG0645|consen    4 LILEQKLSGHKDRV-WSVAWH----PGKGVILASCGTDKAVR--------IWSTSSGDSWTCKTVLDDGHKRSV-RSVAW   69 (312)
T ss_pred             ceeEEeecCCCCcE-EEEEec----cCCceEEEeecCCceEE--------EEecCCCCcEEEEEeccccchhee-eeeee
Confidence            34457899999999 699999    66 88999999877665        599884   44555554 677666 99999


Q ss_pred             c--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEE
Q psy18018         90 S--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVK  165 (635)
Q Consensus        90 s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~  165 (635)
                      +  |++||++|.|.++.||.-..+                   ..+++..|+||...|.|++|  +|.+||+++.|++|-
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~-------------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVW  130 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDG-------------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVW  130 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCC-------------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEE
Confidence            8  999999999999999986644                   35789999999999999999  999999999999999


Q ss_pred             EEeCCCcc---ceeeccccc-eeEEeeeccCCCEEEEEeCCCcEEEEECC---CCeEEEEEeCCCCCeEEEEee--CCEE
Q psy18018        166 IWNPDTEE---CLHAELQET-EVELSHGYALRSRIVSGSDDNTLKVWSAT---TGKCLRTLIGHTGGVWSSQMA--GNII  236 (635)
Q Consensus       166 iwd~~~~~---~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~--~~~l  236 (635)
                      ||.++.+.   +...+..|. .+......|..+.|++++.|.+|++|+-.   ..++++++.+|...|++++|+  |..|
T Consensus       131 iWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl  210 (312)
T KOG0645|consen  131 IWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL  210 (312)
T ss_pred             EEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence            99998554   344455554 45556666778999999999999999866   357899999999999999995  7899


Q ss_pred             EEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccccee
Q psy18018        237 ISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWR  316 (635)
Q Consensus       237 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (635)
                      ++++.|+++++|......                                                              
T Consensus       211 ~s~sdD~tv~Iw~~~~~~--------------------------------------------------------------  228 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRLYTDL--------------------------------------------------------------  228 (312)
T ss_pred             EEecCCcceEeeeeccCc--------------------------------------------------------------
Confidence            999999999999743211                                                              


Q ss_pred             EeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--e-----EEeeeCCCcceeEE
Q psy18018        317 FLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--L-----RHTLMGHQSLTSGM  389 (635)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~-----~~~~~~~~~~v~~l  389 (635)
                                            ...+......+.-+...+++++.|+.|++|.-....  +     ...-..|...|+++
T Consensus       229 ----------------------~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  229 ----------------------SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             ----------------------chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence                                  001111122233336679999999999999876431  1     12335688899999


Q ss_pred             EEeC---CEEEEEeCCCcEEEEEcc
Q psy18018        390 ELRN---NILVSGNADSTVKVWDIV  411 (635)
Q Consensus       390 ~~~~---~~l~s~~~dg~i~iwd~~  411 (635)
                      .|++   +.|++++.||.+++|.+.
T Consensus       287 ~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  287 QWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEcCCCCCceeecCCCceEEEEEec
Confidence            9984   689999999999998764

>KOG0276|consensus

Probab=100.00  E-value=8.5e-32  Score=245.22  Aligned_cols=279  Identities=23%  Similarity=0.371  Sum_probs=228.8

Q ss_pred             CceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         73 PKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      .+.+..|+++| .|+.|.  ..++.++-.+|.|                     .|||.++...++.+.-..-||++..|
T Consensus         6 krk~~~rSdRV-KsVd~HPtePw~la~LynG~V---------------------~IWnyetqtmVksfeV~~~PvRa~kf   63 (794)
T KOG0276|consen    6 KRKFQSRSDRV-KSVDFHPTEPWILAALYNGDV---------------------QIWNYETQTMVKSFEVSEVPVRAAKF   63 (794)
T ss_pred             hhHhhccCCce-eeeecCCCCceEEEeeecCee---------------------EEEecccceeeeeeeecccchhhhee
Confidence            34556688887 888888  5555555555554                     55555677788888888899999999


Q ss_pred             --cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCe
Q psy18018        151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGV  226 (635)
Q Consensus       151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v  226 (635)
                        ..+++++|++|..||+++..+++.+..+..|.....+ ...|...+++++++|-+|++||.+. ..+.+++.||+.-|
T Consensus        64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV  143 (794)
T KOG0276|consen   64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV  143 (794)
T ss_pred             eeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEE
Confidence              7889999999999999999999999999988775554 4456678999999999999999976 57889999999998


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      ..++|                                                                           
T Consensus       144 Mqv~f---------------------------------------------------------------------------  148 (794)
T KOG0276|consen  144 MQVAF---------------------------------------------------------------------------  148 (794)
T ss_pred             EEEEe---------------------------------------------------------------------------
Confidence            88885                                                                           


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL  385 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~  385 (635)
                                                                 .| |.+.+++++-|++|++|.+.+..+..++.+|...
T Consensus       149 -------------------------------------------nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG  185 (794)
T KOG0276|consen  149 -------------------------------------------NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG  185 (794)
T ss_pred             -------------------------------------------cCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence                                                       33 4556777778888888888888888899999999


Q ss_pred             eeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec
Q psy18018        386 TSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  465 (635)
Q Consensus       386 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  465 (635)
                      |+++.+-+.                             .|..+|++|+.|.++++||.++..+++++.||...|..+.|+
T Consensus       186 VN~Vdyy~~-----------------------------gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh  236 (794)
T KOG0276|consen  186 VNCVDYYTG-----------------------------GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH  236 (794)
T ss_pred             cceEEeccC-----------------------------CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence            999998521                             244578888888899999999999999999999999999998


Q ss_pred             CC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEE
Q psy18018        466 NN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKL  523 (635)
Q Consensus       466 ~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~v  523 (635)
                      +.  ++++|++||+++||+-.+-+....+.-   .-..+.|++.  .++.++.|.++|.+.+
T Consensus       237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~---gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNY---GLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcceehhhhhhc---CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            76  899999999999999988887777765   6778999996  4667888887776554

>KOG0316|consensus

Probab=100.00  E-value=1.8e-32  Score=219.04  Aligned_cols=222  Identities=23%  Similarity=0.359  Sum_probs=182.8

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      .+.|+..+++++.|..+.+||..+|+..+.+++|...|+.+.|+  ...+++|+.|.++++||.++              
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS--------------  132 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS--------------  132 (307)
T ss_pred             ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc--------------
Confidence            44566778889999999999999999999999999999999998  34566666665555555442              


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  506 (635)
                                       ++.++++.+......|.++...+..+++|+.||+++.||++.|+......     ..+|+|++
T Consensus       133 -----------------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~-----g~pit~vs  190 (307)
T KOG0316|consen  133 -----------------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF-----GHPITSVS  190 (307)
T ss_pred             -----------------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc-----CCcceeEE
Confidence                             23467888888888999999999999999999999999999998776664     35788888


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      |  |++..+.++.|+++++.|-.+|+++..++++....         -=...+++.....+++|++||.|.+||+.....
T Consensus       191 ~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e---------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  191 FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME---------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             ecCCCCEEEEeeccceeeecccchhHHHHHhcccccce---------eeeeeeecccceeEEeccCCceEEEEEecccee
Confidence            8  79999999999999999999999998888753211         123346677788999999999999999999999


Q ss_pred             EEeeeeccCCCCCce-EEEEEeCCCCeEEEEccCCCe
Q psy18018        585 IRNLVSLDSGGSGGV-VWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~-i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      +..+     ..+... +..+.+.|.-..++++...+.
T Consensus       262 ~sk~-----~~~~~v~v~dl~~hp~~~~f~~A~~~~~  293 (307)
T KOG0316|consen  262 ISKL-----SVVSTVIVTDLSCHPTMDDFITATGHGD  293 (307)
T ss_pred             eeee-----ccCCceeEEeeecccCccceeEecCCce
Confidence            9888     455666 899999999988888877774

>KOG0292|consensus

Probab=100.00  E-value=5.3e-31  Score=249.60  Aligned_cols=459  Identities=18%  Similarity=0.203  Sum_probs=307.6

Q ss_pred             CccceeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCc
Q psy18018          2 SHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDD   81 (635)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~   81 (635)
                      .|.+++.-|+++.....-.|-+|.++| +.++|.    |++-+..||+++..+.        +|+..+.+++.+|.||-+
T Consensus        28 lHsG~IQlWDYRM~tli~rFdeHdGpV-Rgv~FH----~~qplFVSGGDDykIk--------VWnYk~rrclftL~GHlD   94 (1202)
T KOG0292|consen   28 LHSGVIQLWDYRMGTLIDRFDEHDGPV-RGVDFH----PTQPLFVSGGDDYKIK--------VWNYKTRRCLFTLLGHLD   94 (1202)
T ss_pred             ecCceeeeehhhhhhHHhhhhccCCcc-ceeeec----CCCCeEEecCCccEEE--------EEecccceehhhhccccc
Confidence            488999999999999999999999999 999999    9999999998766554        699999999999999999


Q ss_pred             ceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEE
Q psy18018         82 HVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVS  157 (635)
Q Consensus        82 ~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s  157 (635)
                      -| +.+.|.  -.+++|+|+|.+|+||+++                     +++++..+.||..-|.|..|  ....++|
T Consensus        95 YV-Rt~~FHheyPWIlSASDDQTIrIWNwq---------------------sr~~iavltGHnHYVMcAqFhptEDlIVS  152 (1202)
T KOG0292|consen   95 YV-RTVFFHHEYPWILSASDDQTIRIWNWQ---------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVS  152 (1202)
T ss_pred             ee-EEeeccCCCceEEEccCCCeEEEEecc---------------------CCceEEEEecCceEEEeeccCCccceEEE
Confidence            88 999999  6789999999999888876                     56778999999999999999  5789999


Q ss_pred             EeCCCeEEEEeCCCcccee-----------------------------ecccc-ceeEEeeeccCCCEEEEEeCCCcEEE
Q psy18018        158 GAYDYMVKIWNPDTEECLH-----------------------------AELQE-TEVELSHGYALRSRIVSGSDDNTLKV  207 (635)
Q Consensus       158 ~~~dg~v~iwd~~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~v  207 (635)
                      +|-|-+||+||+..-+...                             .+.+| .++....+.+.-..+++|++|..|++
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence            9999999999986432111                             11112 22334444455678999999999999


Q ss_pred             EECCCCe--EEEEEeCCCCCeEEEEeeC--CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccc
Q psy18018        208 WSATTGK--CLRTLIGHTGGVWSSQMAG--NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD  283 (635)
Q Consensus       208 wd~~~~~--~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (635)
                      |.++..+  .+-+..||.+.|.++-|++  +.+++.|+|++|++||+..+.....                         
T Consensus       233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t-------------------------  287 (1202)
T KOG0292|consen  233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT-------------------------  287 (1202)
T ss_pred             EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee-------------------------
Confidence            9987644  3456789999999999975  8999999999999999876532110                         


Q ss_pred             eeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC
Q psy18018        284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT  363 (635)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  363 (635)
                                                                           ........++++.+|..+++++|...|
T Consensus       288 -----------------------------------------------------frrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  288 -----------------------------------------------------FRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             -----------------------------------------------------eeccCCeEEEEEecCCcceeeeecCCc
Confidence                                                                 011223456677888888888777555


Q ss_pred             eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE--------------EeeCCcE-
Q psy18018        364 SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI--------------CLFDGVH-  428 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~-  428 (635)
                       +.+|.++..++.            .+.+++.|+-.- |..|+.+|+.+.+......+              +.|..+. 
T Consensus       315 -m~VFkleRErpa------------~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~v  380 (1202)
T KOG0292|consen  315 -MIVFKLERERPA------------YAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAV  380 (1202)
T ss_pred             -eEEEEEcccCce------------EEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeE
Confidence             667777644332            334445454444 77888888887544433332              2333332 


Q ss_pred             EEEEe-CCCcEEEEeCCCCceee---eeccCCccEEEEEecCCEEEEEeC-CCcEEEEECCCCceeEEecCCCcccccEE
Q psy18018        429 VVSGS-LDTSIRVWEAESGNLRH---TLMGHQSLTSGMELRNNILVSGNA-DSTVKVWDIVSGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       429 l~~~~-~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  503 (635)
                      +++.. .++.--++.+.......   .-.-......++-...+.++.-.. +..+.+=++.+ +..+.+..    ...+-
T Consensus       381 lics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~----~~~~~  455 (1202)
T KOG0292|consen  381 LICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLL----PESTD  455 (1202)
T ss_pred             EEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccc-hhhhcccC----ccccc
Confidence            33322 23333344333211000   000011122233333333333332 44455555443 22333332    12333


Q ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        504 CLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       504 ~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      .+-+  .|.+|+ .+ ...|.+||++..+.+..+..             ..+.-+.||+|..++|--+ -.+|.|.|. .
T Consensus       456 ~IF~ag~g~lll-~~-~~~v~lfdvQq~~~~~si~~-------------s~vkyvvws~dm~~vAll~-Kh~i~i~~k-k  518 (1202)
T KOG0292|consen  456 DIFYAGTGNLLL-RS-PDSVTLFDVQQKKKVGSIKV-------------SKVKYVVWSNDMSRVALLS-KHTITIADK-K  518 (1202)
T ss_pred             ceeeccCccEEE-Ec-CCeEEEEEeecceEEEEEec-------------CceeEEEEcCccchhhhcc-cceEEEEec-c
Confidence            4444  234333 33 44699999998877666543             4677788999988887665 356888874 3


Q ss_pred             CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        582 GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                      -+.+.++      ...-+|.+-+|..+|-+|.+.
T Consensus       519 L~l~~si------hEtiriksgawde~gVfiYtT  546 (1202)
T KOG0292|consen  519 LELLCSI------HETIRIKSGAWDEDGVFIYTT  546 (1202)
T ss_pred             hhheecc------hheeEeeeceeccCceEEEEe
Confidence            4445544      234467777788877766654

>KOG0263|consensus

Probab=100.00  E-value=1.6e-33  Score=264.36  Aligned_cols=219  Identities=26%  Similarity=0.496  Sum_probs=195.6

Q ss_pred             ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcE
Q psy18018        359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSI  438 (635)
Q Consensus       359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  438 (635)
                      .+.|-.+.+.|..+....+.+.+|.++|....|+                               |+.++|++++.|+++
T Consensus       427 ~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs-------------------------------Pd~rfLlScSED~sv  475 (707)
T KOG0263|consen  427 ESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS-------------------------------PDRRFLLSCSEDSSV  475 (707)
T ss_pred             cccchhhhhccccCCceeEEeecCCCceeeeeec-------------------------------ccccceeeccCCcce
Confidence            3344446677777777778899999999988876                               677888888888999


Q ss_pred             EEEeCCCCceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEE
Q psy18018        439 RVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT  514 (635)
Q Consensus       439 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  514 (635)
                      ++|.+.+...+..++||..+|..+.|.+  -++|+++.|++.++|......+++.+.+   |...|.|+.|  +..|+++
T Consensus       476 RLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag---hlsDV~cv~FHPNs~Y~aT  552 (707)
T KOG0263|consen  476 RLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG---HLSDVDCVSFHPNSNYVAT  552 (707)
T ss_pred             eeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc---cccccceEEECCccccccc
Confidence            9999999999999999999999998865  4999999999999999999888888888   9999999999  6899999


Q ss_pred             EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCC
Q psy18018        515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG  594 (635)
Q Consensus       515 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  594 (635)
                      ||.|.++|+||+.+|..++.+.+           |.++|++++|||+|++|++|++||.|++||+.+++++.++     .
T Consensus       553 GSsD~tVRlWDv~~G~~VRiF~G-----------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l-----~  616 (707)
T KOG0263|consen  553 GSSDRTVRLWDVSTGNSVRIFTG-----------HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL-----K  616 (707)
T ss_pred             CCCCceEEEEEcCCCcEEEEecC-----------CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-----h
Confidence            99999999999999999888865           7999999999999999999999999999999999999999     5


Q ss_pred             CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        595 GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       595 ~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +|.+.|.+|.||.||..||+|+.|.+  |++|  |+.
T Consensus       617 ~Ht~ti~SlsFS~dg~vLasgg~Dns--V~lW--D~~  649 (707)
T KOG0263|consen  617 GHTGTIYSLSFSRDGNVLASGGADNS--VRLW--DLT  649 (707)
T ss_pred             cccCceeEEEEecCCCEEEecCCCCe--EEEE--Ech
Confidence            78999999999999999999999998  5555  654

>KOG0274|consensus

Probab=100.00  E-value=2.3e-32  Score=263.38  Aligned_cols=297  Identities=36%  Similarity=0.573  Sum_probs=245.0

Q ss_pred             ccceeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCce-eeccCc
Q psy18018          3 HRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKV-LKGHDD   81 (635)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~-l~~h~~   81 (635)
                      |.-++-+|..........+.+|.+..+.|..|.      ..++.+++.+.        .+.+||..++..+.. +.||.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~------~~~~~~~s~~~--------tl~~~~~~~~~~i~~~l~GH~g  250 (537)
T KOG0274|consen  185 RFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH------DGFFKSGSDDS--------TLHLWDLNNGYLILTRLVGHFG  250 (537)
T ss_pred             hhhccccccccccccceeecccCcchhhhheee------cCeEEecCCCc--------eeEEeecccceEEEeeccCCCC
Confidence            444566787777777788888777777899998      35566666543        334699999999988 999999


Q ss_pred             ceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEe
Q psy18018         82 HVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGA  159 (635)
Q Consensus        82 ~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~  159 (635)
                      .| .+++|.  +.+|++|+.|.++++||..                     ++++.+.+.+|.+.|.++...+..+++|+
T Consensus       251 ~V-~~l~~~~~~~~lvsgS~D~t~rvWd~~---------------------sg~C~~~l~gh~stv~~~~~~~~~~~sgs  308 (537)
T KOG0274|consen  251 GV-WGLAFPSGGDKLVSGSTDKTERVWDCS---------------------TGECTHSLQGHTSSVRCLTIDPFLLVSGS  308 (537)
T ss_pred             Cc-eeEEEecCCCEEEEEecCCcEEeEecC---------------------CCcEEEEecCCCceEEEEEccCceEeecc
Confidence            99 999999  9999999999999888865                     56778999999999999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeC-CEEEE
Q psy18018        160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAG-NIIIS  238 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s  238 (635)
                      .|.+|++|+++++..+..+..+...+...... ++.+++|+.|++|++||+.++++++++.+|...|+++.+++ +.+++
T Consensus       309 ~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~S  387 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLS  387 (537)
T ss_pred             CCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEe
Confidence            99999999999999999888665555555554 89999999999999999999999999999999999999998 99999


Q ss_pred             eeCceeEEEecccce-eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeE
Q psy18018        239 GSTDRTLKGWSNAER-ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRF  317 (635)
Q Consensus       239 ~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (635)
                      |+.|++|++||+.+. ...                                                             
T Consensus       388 gs~D~~IkvWdl~~~~~c~-------------------------------------------------------------  406 (537)
T KOG0274|consen  388 GSLDTTIKVWDLRTKRKCI-------------------------------------------------------------  406 (537)
T ss_pred             eeeccceEeecCCchhhhh-------------------------------------------------------------
Confidence            999999999998875 111                                                             


Q ss_pred             eecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEeCCEE
Q psy18018        318 LAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNIL  396 (635)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~~~~l  396 (635)
                                         .....|...+..+...+++|++++.|+.|++||..++++++.+.+ |...|.+++.....+
T Consensus       407 -------------------~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~i  467 (537)
T KOG0274|consen  407 -------------------HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEI  467 (537)
T ss_pred             -------------------hhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceE
Confidence                               111223333344666789999999999999999999999999999 678888888876666


Q ss_pred             EEEeCCCcEEEEEccCCcce
Q psy18018        397 VSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       397 ~s~~~dg~i~iwd~~~~~~~  416 (635)
                      +.++.|+.+.+||+.+++..
T Consensus       468 l~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  468 LCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             EEEecCCeeEEEecccCchh
Confidence            66667766666666655443

>KOG0265|consensus

Probab=100.00  E-value=1e-31  Score=222.85  Aligned_cols=270  Identities=27%  Similarity=0.438  Sum_probs=223.5

Q ss_pred             CCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEE
Q psy18018         72 DPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQ  149 (635)
Q Consensus        72 ~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~  149 (635)
                      ++..+.||++.| ..+.|+  |.+|||||.|..|.+|++..                    ..+-...+++|.++|..+.
T Consensus        39 p~m~l~gh~geI-~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--------------------dceN~~~lkgHsgAVM~l~   97 (338)
T KOG0265|consen   39 PIMLLPGHKGEI-YTIKFHPDGSCFASGGSDRAIVLWNVYG--------------------DCENFWVLKGHSGAVMELH   97 (338)
T ss_pred             hhhhcCCCcceE-EEEEECCCCCeEeecCCcceEEEEeccc--------------------cccceeeeccccceeEeee
Confidence            455678999988 899999  99999999999999999752                    2244567789999999999


Q ss_pred             e--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccC--CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        150 Y--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       150 ~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                      |  |+..+++++.|.+|+.||.++|+..++...+...+..+....  -..+.+++.|+++++||+++..+++++.. .-+
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyq  176 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQ  176 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-cee
Confidence            9  999999999999999999999999999988887776665322  23566778888888888887777666531 223


Q ss_pred             eEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhh
Q psy18018        226 VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL  305 (635)
Q Consensus       226 v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (635)
                      ++++.                                                                           
T Consensus       177 ltAv~---------------------------------------------------------------------------  181 (338)
T KOG0265|consen  177 LTAVG---------------------------------------------------------------------------  181 (338)
T ss_pred             EEEEE---------------------------------------------------------------------------
Confidence            33333                                                                           


Q ss_pred             HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc
Q psy18018        306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL  385 (635)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~  385 (635)
                                                                 |..++..+.+|+-|+.|++||++.......+.+|...
T Consensus       182 -------------------------------------------f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt  218 (338)
T KOG0265|consen  182 -------------------------------------------FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT  218 (338)
T ss_pred             -------------------------------------------ecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence                                                       4555667888888999999999989999999999999


Q ss_pred             eeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE----E-------------EEEeeCCcEEEEEeCCCcEEEEeCCCC
Q psy18018        386 TSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM----F-------------RICLFDGVHVVSGSLDTSIRVWEAESG  446 (635)
Q Consensus       386 v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~----~-------------~~~~~~~~~l~~~~~d~~i~~~d~~~~  446 (635)
                      |+.+..+  +.++.+-+.|.++++||++.-.+...    +             ..++|++..+.+|+.|+.+++||....
T Consensus       219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence            9999987  78999999999999999876433222    1             237899999999999999999999999


Q ss_pred             ceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEE
Q psy18018        447 NLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVW  481 (635)
Q Consensus       447 ~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iw  481 (635)
                      ..+..+.||.+.|+++.|.+  .++.+++.|++|++=
T Consensus       299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            99999999999999999965  599999999999873

>KOG0293|consensus

Probab=100.00  E-value=2.9e-32  Score=235.68  Aligned_cols=291  Identities=23%  Similarity=0.393  Sum_probs=236.6

Q ss_pred             CCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceE
Q psy18018         69 PIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVR  146 (635)
Q Consensus        69 ~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~  146 (635)
                      +.+..++|..|++.| .-+.||  |+||||++.|.+..+|++...                 .+ -+...++.+|..+|.
T Consensus       213 p~qt~qil~~htdEV-Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----------------~~-~kl~~tlvgh~~~V~  273 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEV-WFLQFSHNGKYLASASKDSTAIIWIVVYD-----------------VH-FKLKKTLVGHSQPVS  273 (519)
T ss_pred             CchhhhhHhhCCCcE-EEEEEcCCCeeEeeccCCceEEEEEEecC-----------------cc-eeeeeeeecccCceE
Confidence            445567899999999 899999  999999999999999987532                 22 467889999999999


Q ss_pred             EEEe--cCCEEEEEeCCCeEEEEeCCCccceeecccc--ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy18018        147 CVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQE--TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGH  222 (635)
Q Consensus       147 ~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  222 (635)
                      .+.|  |.++|++|+.|..+++||+.+|+....+...  ..+..++.++++.++++|+.|+.+..||++ |..+...++-
T Consensus       274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv  352 (519)
T KOG0293|consen  274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV  352 (519)
T ss_pred             EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccc
Confidence            9999  9999999999999999999999988877666  556777888999999999999999999985 5555555553


Q ss_pred             C-CCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        223 T-GGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       223 ~-~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      . ..|.+++.  +|.++++.+.|..|++++.++....                                           
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-------------------------------------------  389 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-------------------------------------------  389 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-------------------------------------------
Confidence            3 45777776  7999999999999999997653210                                           


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                          ......+.....++|.+++++++.-.+..+++||++....+..+
T Consensus       390 ------------------------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  390 ------------------------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             ------------------------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence                                                01122344556678889999999999999999999988888889


Q ss_pred             eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018        380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  459 (635)
Q Consensus       380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  459 (635)
                      .+|...-        +++-.+-.|                    .+..++++|++|+.|++|+..+++++.++.||...|
T Consensus       434 ~Ghkq~~--------fiIrSCFgg--------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v  485 (519)
T KOG0293|consen  434 FGHKQGH--------FIIRSCFGG--------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV  485 (519)
T ss_pred             hcccccc--------eEEEeccCC--------------------CCcceEEecCCCceEEEEEccCCceeEeecCCccee
Confidence            8987532        111111111                    355678999999999999999999999999999999


Q ss_pred             EEEEecC---CEEEEEeCCCcEEEEECCCC
Q psy18018        460 SGMELRN---NILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       460 ~~~~~~~---~~l~s~~~dg~i~iwd~~~~  486 (635)
                      ++++++|   .++|++++||+|+||.+...
T Consensus       486 NcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  486 NCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999964   59999999999999987643

>KOG0316|consensus

Probab=100.00  E-value=9.2e-32  Score=214.99  Aligned_cols=285  Identities=21%  Similarity=0.354  Sum_probs=228.2

Q ss_pred             CCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--C
Q psy18018         14 PIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--G   91 (635)
Q Consensus        14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~   91 (635)
                      |.++...|.+|.++| .++.|+    -||+|..+++.++.+.        +|++..+.++++..||...| ..++.+  .
T Consensus         6 ptkr~~~l~~~qgaV-~avryN----~dGnY~ltcGsdrtvr--------LWNp~rg~liktYsghG~EV-lD~~~s~Dn   71 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAV-RAVRYN----VDGNYCLTCGSDRTVR--------LWNPLRGALIKTYSGHGHEV-LDAALSSDN   71 (307)
T ss_pred             cchhceeecccccce-EEEEEc----cCCCEEEEcCCCceEE--------eecccccceeeeecCCCcee-eeccccccc
Confidence            567778899999999 999999    8999999998766554        69999999999999998888 777777  7


Q ss_pred             CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeC
Q psy18018         92 SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus        92 ~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~  169 (635)
                      ..+++|+.|+.|.+||++                     +|+..+.+.+|.+.|+.+.|  +...+++|+.|.++++||.
T Consensus        72 skf~s~GgDk~v~vwDV~---------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDC  130 (307)
T KOG0316|consen   72 SKFASCGGDKAVQVWDVN---------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDC  130 (307)
T ss_pred             cccccCCCCceEEEEEcc---------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEc
Confidence            788888888887777765                     56778999999999999999  6678888888888888876


Q ss_pred             CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEec
Q psy18018        170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWS  249 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~  249 (635)
                      +.                                       ++.++++.+....+.|.++...+..+++|+.||++|.||
T Consensus       131 RS---------------------------------------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd  171 (307)
T KOG0316|consen  131 RS---------------------------------------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD  171 (307)
T ss_pred             cc---------------------------------------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence            54                                       234666777777788999999999999999999999999


Q ss_pred             ccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhh
Q psy18018        250 NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC  329 (635)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (635)
                      ++.+.+.                                                                         
T Consensus       172 iR~G~l~-------------------------------------------------------------------------  178 (307)
T KOG0316|consen  172 IRKGTLS-------------------------------------------------------------------------  178 (307)
T ss_pred             eecceee-------------------------------------------------------------------------
Confidence            8876432                                                                         


Q ss_pred             hhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEE
Q psy18018        330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD  409 (635)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd  409 (635)
                             ....+++..+++|+++++..++++.++.+++.|-.+|+.+..+++|...-..+...                 
T Consensus       179 -------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~-----------------  234 (307)
T KOG0316|consen  179 -------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC-----------------  234 (307)
T ss_pred             -------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee-----------------
Confidence                   23456788889999999999999999999999999999999999998754443321                 


Q ss_pred             ccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCcc-EEEEEecCC--EEEEEeCCCcEEEEE
Q psy18018        410 IVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL-TSGMELRNN--ILVSGNADSTVKVWD  482 (635)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~--~l~s~~~dg~i~iwd  482 (635)
                                  +.....++++|++||.+++||+.+...+..+..+... +..+++++.  .++++.. +.+..|-
T Consensus       235 ------------l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  235 ------------LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             ------------ecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence                        1223445777778888888888888888888877776 778888765  3444443 3355554

>KOG0274|consensus

Probab=100.00  E-value=1.8e-31  Score=257.24  Aligned_cols=309  Identities=41%  Similarity=0.713  Sum_probs=247.4

Q ss_pred             cchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeC
Q psy18018         50 PWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHI  129 (635)
Q Consensus        50 ~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~  129 (635)
                      .++.++.........|........+.+.+|....+.|..|.+.++++++.|++|.+||..+                   
T Consensus       177 ~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~-------------------  237 (537)
T KOG0274|consen  177 PWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNN-------------------  237 (537)
T ss_pred             hhhhhhhhhhhccccccccccccceeecccCcchhhhheeecCeEEecCCCceeEEeeccc-------------------
Confidence            4455555555555557666555566677777777789999988999999998888888764                   


Q ss_pred             CCCeEEEE-eeCCCcceEEEEec--CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018        130 ESGECLHV-LVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLK  206 (635)
Q Consensus       130 ~~~~~~~~-l~~h~~~v~~l~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  206 (635)
                        +..+.. +.||.+.|.++++.  +.+|++|+.|.++++||..++++...+.++.....+... ....+++|+.|.+|+
T Consensus       238 --~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~-~~~~~~sgs~D~tVk  314 (537)
T KOG0274|consen  238 --GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI-DPFLLVSGSRDNTVK  314 (537)
T ss_pred             --ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc-cCceEeeccCCceEE
Confidence              444555 99999999999995  899999999999999999888888888876665554433 345666778888888


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceee
Q psy18018        207 VWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFIS  286 (635)
Q Consensus       207 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (635)
                      +|++.+++.+..+.+|.++|.++..++++                                                   
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~---------------------------------------------------  343 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLDEPL---------------------------------------------------  343 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEecCCE---------------------------------------------------
Confidence            88888888888888888888887755444                                                   


Q ss_pred             ccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEE
Q psy18018        287 LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIR  366 (635)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  366 (635)
                                                                                           +++|+.|+.|.
T Consensus       344 ---------------------------------------------------------------------lvsgs~d~~v~  354 (537)
T KOG0274|consen  344 ---------------------------------------------------------------------LVSGSYDGTVK  354 (537)
T ss_pred             ---------------------------------------------------------------------EEEEecCceEE
Confidence                                                                                 55555566667


Q ss_pred             EEEccCCceEEeeeCCCcceeEEEEeC-CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        367 VWEAESGNLRHTLMGHQSLTSGMELRN-NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       367 v~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                      +|++.+++++..+.+|...|.++.+++ +.++                                 +|+.|+.|++||+++
T Consensus       355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~---------------------------------Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLSGHTGRVYSLIVDSENRLL---------------------------------SGSLDTTIKVWDLRT  401 (537)
T ss_pred             EEEhhhceeeeeecCCcceEEEEEecCcceEE---------------------------------eeeeccceEeecCCc
Confidence            777778899999999999999998775 5544                                 455555566666666


Q ss_pred             C-ceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEE
Q psy18018        446 G-NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLW  524 (635)
Q Consensus       446 ~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vw  524 (635)
                      . +++.++.+|...+..+.+.++.|++++.|++|++||..++++++.+.+.  |...|++++.....+++++.|+.+++|
T Consensus       402 ~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  402 KRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALGKEEILCSSDDGSVKLW  479 (537)
T ss_pred             hhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecCcceEEEEecCCeeEEE
Confidence            6 8899999999999999999999999999999999999999999999874  567888888887889999999999999


Q ss_pred             ECCCCceeeee
Q psy18018        525 DVKTGEFSTPL  535 (635)
Q Consensus       525 d~~~~~~~~~~  535 (635)
                      |+++++....+
T Consensus       480 dl~~~~~~~~l  490 (537)
T KOG0274|consen  480 DLRSGTLIRTL  490 (537)
T ss_pred             ecccCchhhhh
Confidence            99999877655

>KOG0284|consensus

Probab=100.00  E-value=7.6e-33  Score=239.04  Aligned_cols=274  Identities=23%  Similarity=0.366  Sum_probs=228.8

Q ss_pred             eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018        184 VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLI  261 (635)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  261 (635)
                      +......+.+.+|++|+..|.+.+|+..+-.....++.|..+|.++.|  ++.++++|+.+|.|++|+..-+..      
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV------  172 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV------  172 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh------
Confidence            334444566799999999999999997554444556799999999999  589999999999999998654321      


Q ss_pred             cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018        262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT  341 (635)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (635)
                                                                                              ......+.
T Consensus       173 ------------------------------------------------------------------------k~~~ahh~  180 (464)
T KOG0284|consen  173 ------------------------------------------------------------------------KIIQAHHA  180 (464)
T ss_pred             ------------------------------------------------------------------------HHhhHhhh
Confidence                                                                                    11123334


Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ..++.++|+|+...+++++.||.|+|||....+....+.+|.-.|.++.|.+                            
T Consensus       181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP----------------------------  232 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP----------------------------  232 (464)
T ss_pred             hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC----------------------------
Confidence            5667789999999999999999999999998888888999999999999973                            


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ  499 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  499 (635)
                         ....+++++.|..|++||.+++.++.++.+|+..|.++.|+  +++|++++.|..++++|+++.+.+..+++   |.
T Consensus       233 ---~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---Hk  306 (464)
T KOG0284|consen  233 ---TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---HK  306 (464)
T ss_pred             ---ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc---ch
Confidence               23345566666778888888999999999999999999994  67999999999999999998888888887   99


Q ss_pred             ccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        500 SAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       500 ~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      ..++++.|   +..+|.+|+.||.|..|.+...+.+..+..          +|...|.+++|+|-|.+|++|+.|.++++
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~----------AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP----------AHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEeccccccccCCCc----------ccccceeeeeccccceeEeecCCCcceee
Confidence            99999998   588999999999999999985554444333          48999999999999999999999999999


Q ss_pred             EeC
Q psy18018        577 WDV  579 (635)
Q Consensus       577 wd~  579 (635)
                      |.-
T Consensus       377 w~r  379 (464)
T KOG0284|consen  377 WTR  379 (464)
T ss_pred             ecc
Confidence            963

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2e-30  Score=272.60  Aligned_cols=307  Identities=16%  Similarity=0.245  Sum_probs=217.8

Q ss_pred             CCcEEEEeCCCCeEEEE-----eeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc--------ceeeccccceeE
Q psy18018        121 DATLRVWHIESGECLHV-----LVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE--------CLHAELQETEVE  185 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~-----l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~  185 (635)
                      +|.+++|+..+.+....     +..|.+.|.+++|  ++++||+|+.|+.|++||.....        +......+..+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            45566666665544433     3459999999999  89999999999999999976421        111122222222


Q ss_pred             Eeeecc-CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecccccccc
Q psy18018        186 LSHGYA-LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSC  264 (635)
Q Consensus       186 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~  264 (635)
                      .....+ .+.+|++++.||.|++||+.+++.+..+.+|.+.|++++|                                 
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~---------------------------------  583 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDY---------------------------------  583 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEE---------------------------------
Confidence            222222 3578999999999999999999999999999999988885                                 


Q ss_pred             CccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCC
Q psy18018        265 EPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP  344 (635)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (635)
                                                                                                      
T Consensus       584 --------------------------------------------------------------------------------  583 (793)
T PLN00181        584 --------------------------------------------------------------------------------  583 (793)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        345 DLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       345 ~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                           +| ++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|.                              +
T Consensus       584 -----~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~------------------------------~  627 (793)
T PLN00181        584 -----SSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFP------------------------------S  627 (793)
T ss_pred             -----cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEe------------------------------C
Confidence                 32 3445555555555666665555555444433 345555543                              1


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCc-eeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCC------ceeEEecCC
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSG------QCLQTLSGR  495 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~  495 (635)
                      +++.++++|+.|+.|++||+++.+ ....+.+|...|.++.| ++..+++++.|++|++||+..+      .++..+.+ 
T Consensus       628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-  706 (793)
T PLN00181        628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG-  706 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC-
Confidence            345667777777778888877654 45677889999999988 5779999999999999999743      45667776 


Q ss_pred             CcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccce--ecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        496 NKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF--ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       496 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                        |...+.++++  ++.+|++|+.|+.|++|+..............  .........+...|.+++|+|++.+|++|+.|
T Consensus       707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d  784 (793)
T PLN00181        707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST  784 (793)
T ss_pred             --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC
Confidence              7788888887  58999999999999999987665433222110  00011112345679999999999999999999


Q ss_pred             CeEEEEeC
Q psy18018        572 GTVKLWDV  579 (635)
Q Consensus       572 ~~v~iwd~  579 (635)
                      |.|+||++
T Consensus       785 G~I~i~~~  792 (793)
T PLN00181        785 GNIKILEM  792 (793)
T ss_pred             CcEEEEec
Confidence            99999996

>KOG0266|consensus

Probab=100.00  E-value=1.3e-30  Score=253.40  Aligned_cols=289  Identities=32%  Similarity=0.551  Sum_probs=237.0

Q ss_pred             Ccccccc-ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc--CC
Q psy18018         18 PKVLKGH-DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        18 ~~~l~gh-~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      ...+.+| ...| +|+.||    |+|+++++++.++.+.        +|+....+  ..+.+.+|...| .+++|+  ++
T Consensus       151 ~~~~~~~~~~sv-~~~~fs----~~g~~l~~~~~~~~i~--------~~~~~~~~~~~~~~l~~h~~~v-~~~~fs~d~~  216 (456)
T KOG0266|consen  151 EQTLAGHECPSV-TCVDFS----PDGRALAAASSDGLIR--------IWKLEGIKSNLLRELSGHTRGV-SDVAFSPDGS  216 (456)
T ss_pred             eeeecccccCce-EEEEEc----CCCCeEEEccCCCcEE--------Eeecccccchhhccccccccce-eeeEECCCCc
Confidence            3555566 6666 999999    9999999999866655        59998888  888889999887 999999  88


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD  170 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~  170 (635)
                      ++++++.|++|++||++                    ..+..++++++|...|++++|  +++++++|+.|++|++||+.
T Consensus       217 ~l~s~s~D~tiriwd~~--------------------~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLK--------------------DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             EEEEecCCceEEEeecc--------------------CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            99999999999999984                    235778999999999999999  78999999999999999999


Q ss_pred             CccceeeccccceeEEeeec-cCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEE
Q psy18018        171 TEECLHAELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSATTGK--CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKG  247 (635)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~  247 (635)
                      ++++...+..+...+..+.+ .++..+++++.|+.|++||+.+++  ++..+.++...-                     
T Consensus       277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~---------------------  335 (456)
T KOG0266|consen  277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA---------------------  335 (456)
T ss_pred             CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC---------------------
Confidence            99999999888766555554 557888999999999999999988  445555443330                     


Q ss_pred             ecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhh
Q psy18018        248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE  327 (635)
Q Consensus       248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (635)
                                                                                                      
T Consensus       336 --------------------------------------------------------------------------------  335 (456)
T KOG0266|consen  336 --------------------------------------------------------------------------------  335 (456)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEE
Q psy18018        328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKV  407 (635)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~i  407 (635)
                                     ....+.|+|++.++++++.|+.+++||+..+.....+.+|...+.++. +               
T Consensus       336 ---------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~-~---------------  384 (456)
T KOG0266|consen  336 ---------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF-S---------------  384 (456)
T ss_pred             ---------------ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe-c---------------
Confidence                           122345889999999999999999999999999999999887532211 0               


Q ss_pred             EEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-CccEEEEEec--CCEEEEEe--CCCcEEEEE
Q psy18018        408 WDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-QSLTSGMELR--NNILVSGN--ADSTVKVWD  482 (635)
Q Consensus       408 wd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~--~dg~i~iwd  482 (635)
                                  ...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++  .+++++++  .|+.+++|.
T Consensus       385 ------------~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  385 ------------PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ------------ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence                        011467888999999999999999999999999999 7888877774  56888887  789999997


Q ss_pred             CC
Q psy18018        483 IV  484 (635)
Q Consensus       483 ~~  484 (635)
                      ..
T Consensus       453 ~~  454 (456)
T KOG0266|consen  453 YD  454 (456)
T ss_pred             CC
Confidence            54

>KOG0282|consensus

Probab=100.00  E-value=6.5e-33  Score=244.95  Aligned_cols=263  Identities=23%  Similarity=0.385  Sum_probs=217.3

Q ss_pred             CCccccccccceEEEEEecCCCCC-CCceeecCCcchheeeccceeeeeeecCC-CCCCceeeccCcceEEEEEEc--CC
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFP-CESFIRSSSPWKALFMSHRSVEINWRTRP-IKDPKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~-~~~~la~~~~~~~~~~~~~~~~~iwd~~~-~~~~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      ....+.||+..| +++.|.    | .+.+|++++-+..+        .||++-. +++++++.||..+| ..+.|+  |.
T Consensus       206 ~~~~~~gH~kgv-sai~~f----p~~~hLlLS~gmD~~v--------klW~vy~~~~~lrtf~gH~k~V-rd~~~s~~g~  271 (503)
T KOG0282|consen  206 LSHNLSGHTKGV-SAIQWF----PKKGHLLLSGGMDGLV--------KLWNVYDDRRCLRTFKGHRKPV-RDASFNNCGT  271 (503)
T ss_pred             heeeccCCcccc-chhhhc----cceeeEEEecCCCceE--------EEEEEecCcceehhhhcchhhh-hhhhccccCC
Confidence            346788999999 999999    6 89999999875544        4699886 89999999999988 999999  99


Q ss_pred             EEEEeeCCCcEEEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-  150 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-  150 (635)
                      .+.|+|.|+.|++||+++|+++                     +++|+.|+.|+.||+++++.++.+..|-++|..+.| 
T Consensus       272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  272 SFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             eeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence            9999999999999999999986                     899999999999999999999999999999999999 


Q ss_pred             -cCCEEEEEeCCCeEEEEeCCCccceeecccc--ceeEEeeeccCCCEEEEEeCCCcEEEEECCCC---eEEEEEeCCCC
Q psy18018        151 -DGKLVVSGAYDYMVKIWNPDTEECLHAELQE--TEVELSHGYALRSRIVSGSDDNTLKVWSATTG---KCLRTLIGHTG  224 (635)
Q Consensus       151 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~  224 (635)
                       +++++++.++|++++||+...+..+......  ....++...+.+..+++-+.|+.|.++.+...   ...+.++||..
T Consensus       352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v  431 (503)
T KOG0282|consen  352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV  431 (503)
T ss_pred             cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence             8999999999999999999887766543332  22333444555667777777777777764331   11123344432


Q ss_pred             CeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       225 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      +=++                                                                            
T Consensus       432 aGys----------------------------------------------------------------------------  435 (503)
T KOG0282|consen  432 AGYS----------------------------------------------------------------------------  435 (503)
T ss_pred             cCce----------------------------------------------------------------------------
Confidence            2111                                                                            


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS  384 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~  384 (635)
                                                              .-+.|||||.+|++|+.+|.+.+||..+-+.+..++.|++
T Consensus       436 ----------------------------------------~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~  475 (503)
T KOG0282|consen  436 ----------------------------------------CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ  475 (503)
T ss_pred             ----------------------------------------eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence                                                    1245999999999999999999999999999999999999


Q ss_pred             ceeEEEEe---CCEEEEEeCCCcEEEEE
Q psy18018        385 LTSGMELR---NNILVSGNADSTVKVWD  409 (635)
Q Consensus       385 ~v~~l~~~---~~~l~s~~~dg~i~iwd  409 (635)
                      .+..+.|.   .+.+++++.||.|++|+
T Consensus       476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  476 PCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceEEEEecCCCcceeEecccCceeEecC
Confidence            99999997   56899999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.2e-30  Score=240.14  Aligned_cols=280  Identities=34%  Similarity=0.638  Sum_probs=224.4

Q ss_pred             EEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeE-EeeeccCCCEEEEEeCCCcEEEEECCC
Q psy18018        136 HVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVE-LSHGYALRSRIVSGSDDNTLKVWSATT  212 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~  212 (635)
                      ..+++|.++|++++|  ++++|++++.||.+++|++.+++.......+.... .....+.++.+++++.+|.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            456799999999999  77999999999999999999887666666554444 444555566899999999999999998


Q ss_pred             CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018        213 GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL  292 (635)
Q Consensus       213 ~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (635)
                      ++.+..+..|...+.++.                                                              
T Consensus        83 ~~~~~~~~~~~~~i~~~~--------------------------------------------------------------  100 (289)
T cd00200          83 GECVRTLTGHTSYVSSVA--------------------------------------------------------------  100 (289)
T ss_pred             ccceEEEeccCCcEEEEE--------------------------------------------------------------
Confidence            877777777777666665                                                              


Q ss_pred             eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC
Q psy18018        293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES  372 (635)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~  372 (635)
                                                                              +++++.++++++.++.+.+|++.+
T Consensus       101 --------------------------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~  124 (289)
T cd00200         101 --------------------------------------------------------FSPDGRILSSSSRDKTIKVWDVET  124 (289)
T ss_pred             --------------------------------------------------------EcCCCCEEEEecCCCeEEEEECCC
Confidence                                                                    444455566666677888888877


Q ss_pred             CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee
Q psy18018        373 GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL  452 (635)
Q Consensus       373 ~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  452 (635)
                      ++....+..|...+.++.+++                               ++.++++++.++.+++||+.+++....+
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~-------------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSP-------------------------------DGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcC-------------------------------cCCEEEEEcCCCcEEEEEccccccceeE
Confidence            777777778888888888763                               3344555555677777777777777788


Q ss_pred             ccCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCC
Q psy18018        453 MGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       453 ~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~  528 (635)
                      ..|...+.++.+.++  .+++++.|+.+++||+..++.+..+..   +...+.++.++  +.++++++.|+.+++|++.+
T Consensus       174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            888888999988654  899999999999999999888888765   77789999994  67888887799999999998


Q ss_pred             CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      ++....+..           |...+.+++|+|++++|++++.|+.+++|+
T Consensus       251 ~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         251 GECVQTLSG-----------HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ceeEEEccc-----------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            776665543           577899999999999999999999999996

>KOG0313|consensus

Probab=100.00  E-value=8.1e-31  Score=224.49  Aligned_cols=292  Identities=27%  Similarity=0.433  Sum_probs=225.4

Q ss_pred             ccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-----cC
Q psy18018         78 GHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-----DG  152 (635)
Q Consensus        78 ~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-----~~  152 (635)
                      -|.++| .++.-.++++.||+.||.+++||.+                      |+....+.||.++|.++++     ..
T Consensus       103 ~hdDWV-Ssv~~~~~~IltgsYDg~~riWd~~----------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~  159 (423)
T KOG0313|consen  103 LHDDWV-SSVKGASKWILTGSYDGTSRIWDLK----------------------GKSIKTIVGHTGPIKSVAWVIKNSSS  159 (423)
T ss_pred             cchhhh-hhhcccCceEEEeecCCeeEEEecC----------------------CceEEEEecCCcceeeeEEEecCCcc
Confidence            578888 7777778888899888888888854                      7888999999999999988     22


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe-
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM-  231 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-  231 (635)
                      ..+++++.|.++++|..+.++...                                     +.++...||...|.++.. 
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~-------------------------------------~~~~~~~GHk~~V~sVsv~  202 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKV-------------------------------------KALKVCRGHKRSVDSVSVD  202 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhh-------------------------------------hHHhHhcccccceeEEEec
Confidence            358888888888888766554221                                     111222399999999997 


Q ss_pred             -eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        232 -AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       232 -~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                       ++..+++|+.|.++.+|+.........+....                                               
T Consensus       203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~-----------------------------------------------  235 (423)
T KOG0313|consen  203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSN-----------------------------------------------  235 (423)
T ss_pred             CCCCeEEeecccceeeecccCCCccccccccch-----------------------------------------------
Confidence             58999999999999999943321100000000                                               


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                             .+.++         .-+-=...++.++-.+.+|..+|.++.
T Consensus       236 ---------------------------------------~rrk~---------~~~~~~~~~r~P~vtl~GHt~~Vs~V~  267 (423)
T KOG0313|consen  236 ---------------------------------------RRRKK---------QKREKEGGTRTPLVTLEGHTEPVSSVV  267 (423)
T ss_pred             ---------------------------------------hhhhh---------hhhhhcccccCceEEecccccceeeEE
Confidence                                                   00000         000001234567788999999999999


Q ss_pred             Ee-CCEEEEEeCCCcEEEEEccCCcceeEEE--------EEeeCCcEEEEEeCCCcEEEEeCCCCc---eeeeeccCCcc
Q psy18018        391 LR-NNILVSGNADSTVKVWDIVSGTKKLMFR--------ICLFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMGHQSL  458 (635)
Q Consensus       391 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~  458 (635)
                      |+ ...+++++.|-+|+.||+.++.......        ..++..+.|++|+.|..+++||.+++.   ..+.+.+|++.
T Consensus       268 w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  268 WSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             EcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            98 6789999999999999999887654433        256788899999999999999998753   46789999999


Q ss_pred             EEEEEecC---CEEEEEeCCCcEEEEECCCCc-eeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECC
Q psy18018        459 TSGMELRN---NILVSGNADSTVKVWDIVSGQ-CLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       459 v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~  527 (635)
                      |.++.+++   ..|++++.|+++++||+++.+ ++..+.+   |...|.++.| ++.++++|+.|.+|+++.-.
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            99999964   499999999999999999887 8888888   9999999999 47799999999999998643

>KOG0266|consensus

Probab=100.00  E-value=4.2e-30  Score=249.90  Aligned_cols=240  Identities=32%  Similarity=0.603  Sum_probs=204.2

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEc-cCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEA-ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF  424 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~-~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  424 (635)
                      .++|+|++.++++++.|++|++||+ ..+..++++++|...|++++|+                               |
T Consensus       208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~-------------------------------p  256 (456)
T KOG0266|consen  208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS-------------------------------P  256 (456)
T ss_pred             eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec-------------------------------C
Confidence            3458899999999999999999999 5568899999999999999987                               5


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc--eeEEecCCCcccc
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQ--CLQTLSGRNKHQS  500 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~  500 (635)
                      +++.+++|+.|++|++||++++++...+.+|...|+++++  +++++++++.|+.|++||+.++.  +...+....... 
T Consensus       257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-  335 (456)
T KOG0266|consen  257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-  335 (456)
T ss_pred             CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-
Confidence            6677888888899999999999999999999999999998  56799999999999999999998  566776643333 


Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      +++++.|  ++.++++++.|+.+++||+..+........+...        ...+.+..+++.++++++|+.|+.|++||
T Consensus       336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--------VRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--------ceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            6888988  6999999999999999999999888877764221        02445556688999999999999999999


Q ss_pred             CCCCceEEeeeeccCCCC-CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        579 VKTGEFIRNLVSLDSGGS-GGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +.++..+..+     .+| ...+..+.++|...++++++.++.-.+++|.+++
T Consensus       408 ~~s~~~~~~l-----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  408 SSSGGILQRL-----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             CCccchhhhh-----cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence            9999888888     577 8899999999999999999954444478887764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-29  Score=266.06  Aligned_cols=314  Identities=17%  Similarity=0.213  Sum_probs=224.3

Q ss_pred             CCcEEEEECCCCeEEEE-----EeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeee
Q psy18018        202 DNTLKVWSATTGKCLRT-----LIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQ  274 (635)
Q Consensus       202 dg~i~vwd~~~~~~~~~-----~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (635)
                      +|.+++|+..+.+....     +..|.+.|.+++|+  ++++++|+.|+.|++|+......... ..        ..   
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~--------~~---  524 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DI--------HY---  524 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-cc--------cc---
Confidence            66788888776554433     34589999999995  88999999999999999653210000 00        00   


Q ss_pred             eeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cC
Q psy18018        275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DG  353 (635)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~  353 (635)
                                        ...                                         ..........++|++ ++
T Consensus       525 ------------------~~~-----------------------------------------~~~~~~~v~~l~~~~~~~  545 (793)
T PLN00181        525 ------------------PVV-----------------------------------------ELASRSKLSGICWNSYIK  545 (793)
T ss_pred             ------------------ceE-----------------------------------------EecccCceeeEEeccCCC
Confidence                              000                                         000011233456765 57


Q ss_pred             cEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS  433 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~  433 (635)
                      .+|++++.||.|++||+.+++.+..+.+|...|.+++|++                              +++.+|++|+
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p------------------------------~~~~~L~Sgs  595 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS------------------------------ADPTLLASGS  595 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC------------------------------CCCCEEEEEc
Confidence            8899999999999999999999999999999999999862                              1334455555


Q ss_pred             CCCcEEEEeCCCCceeeeeccCCccEEEEEe---cCCEEEEEeCCCcEEEEECCCCc-eeEEecCCCcccccEEEEEe-c
Q psy18018        434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGQ-CLQTLSGRNKHQSAVTCLQF-N  508 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~-~  508 (635)
                      .|+.|++||+.++..+..+..+ ..+.++.+   ++.++++|+.||.|++||+++.+ .+..+.+   |...|.++.| +
T Consensus       596 ~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~~  671 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFVD  671 (793)
T ss_pred             CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEeC
Confidence            5555666666656665566544 45777776   46799999999999999998765 4556665   8889999999 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018        509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      +.++++++.|++|++||+..+......     ........|...+.+++|+|++++|++|+.|+.|++|+......+..+
T Consensus       672 ~~~lvs~s~D~~ikiWd~~~~~~~~~~-----~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~  746 (793)
T PLN00181        672 SSTLVSSSTDNTLKLWDLSMSISGINE-----TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY  746 (793)
T ss_pred             CCEEEEEECCCEEEEEeCCCCccccCC-----cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence            899999999999999999754210000     000112246778899999999999999999999999998766544332


Q ss_pred             ee--------ccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        589 VS--------LDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       589 ~~--------~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      ..        .....+...|.+++|+|++.+|++|+.||.  +++|.
T Consensus       747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~--I~i~~  791 (793)
T PLN00181        747 KFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN--IKILE  791 (793)
T ss_pred             ecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc--EEEEe
Confidence            11        011234567999999999999999999998  45543

>KOG0293|consensus

Probab=99.98  E-value=4.3e-31  Score=228.52  Aligned_cols=268  Identities=24%  Similarity=0.381  Sum_probs=220.6

Q ss_pred             CCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC---CCCceeeccCcceEEEEEEc
Q psy18018         14 PIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI---KDPKVLKGHDDHVITCLQFS   90 (635)
Q Consensus        14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~---~~~~~l~~h~~~vi~~~~~s   90 (635)
                      |.++.+.|+.|++.|+ -+.||    ++|+|||+++.+        ...++|++...   +..+++.||..+| ..+.||
T Consensus       213 p~qt~qil~~htdEVW-fl~FS----~nGkyLAsaSkD--------~Taiiw~v~~d~~~kl~~tlvgh~~~V-~yi~wS  278 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVW-FLQFS----HNGKYLASASKD--------STAIIWIVVYDVHFKLKKTLVGHSQPV-SYIMWS  278 (519)
T ss_pred             CchhhhhHhhCCCcEE-EEEEc----CCCeeEeeccCC--------ceEEEEEEecCcceeeeeeeecccCce-EEEEEC
Confidence            6667799999999995 89999    999999999964        44456877654   4478999999999 899999


Q ss_pred             --CCEEEEeeCCCcEEEEECCCCcEE----------------------EEEeeCCCcEEEEeCCCCeEEEEeeCC-Ccce
Q psy18018         91 --GSRIVSGSDDNTLKVWSATTGKCL----------------------LVSGSRDATLRVWHIESGECLHVLVGH-LAAV  145 (635)
Q Consensus        91 --~~~l~s~~~d~~v~vWd~~~~~~l----------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h-~~~v  145 (635)
                        .++|++++.|..+++||+.+|...                      +++|+.|+.+..||++. +.....++- ...|
T Consensus       279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v  357 (519)
T KOG0293|consen  279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKV  357 (519)
T ss_pred             CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccccccccee
Confidence              999999999999999999998875                      89999999999999864 444444443 2468


Q ss_pred             EEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy18018        146 RCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT  223 (635)
Q Consensus       146 ~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  223 (635)
                      .+++.  ||+++++.+.|..|++++.++.........+.++.......++.++++--.+..+++||++..+.++.+.||.
T Consensus       358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence            88887  9999999999999999999887776656666666666666677788888889999999999888888888887


Q ss_pred             CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018        224 GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE  303 (635)
Q Consensus       224 ~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (635)
                      ..-.-+.        .                                                                
T Consensus       438 q~~fiIr--------S----------------------------------------------------------------  445 (519)
T KOG0293|consen  438 QGHFIIR--------S----------------------------------------------------------------  445 (519)
T ss_pred             ccceEEE--------e----------------------------------------------------------------
Confidence            5322211        0                                                                


Q ss_pred             hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCC
Q psy18018        304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGH  382 (635)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~  382 (635)
                                                                  ||.- +..++++|++|+.|++|+..+++++..+.+|
T Consensus       446 --------------------------------------------CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH  481 (519)
T KOG0293|consen  446 --------------------------------------------CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH  481 (519)
T ss_pred             --------------------------------------------ccCCCCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence                                                        1211 4468999999999999999999999999999


Q ss_pred             CcceeEEEEe---CCEEEEEeCCCcEEEEEccC
Q psy18018        383 QSLTSGMELR---NNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       383 ~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~  412 (635)
                      ...|++++|+   +.++|+++.||+|+||-...
T Consensus       482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999998   56899999999999997653

>KOG0313|consensus

Probab=99.98  E-value=1.7e-30  Score=222.61  Aligned_cols=319  Identities=26%  Similarity=0.381  Sum_probs=234.7

Q ss_pred             eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEE
Q psy18018          6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVIT   85 (635)
Q Consensus         6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~   85 (635)
                      |||.-...|.+++.-+ -|.|+| ++|...      +++|.+++.++.+        ++|| ..|+..+.+.||.+++ .
T Consensus        87 IEYv~~~~aP~pl~~~-~hdDWV-Ssv~~~------~~~IltgsYDg~~--------riWd-~~Gk~~~~~~Ght~~i-k  148 (423)
T KOG0313|consen   87 IEYVEAITAPKPLQCF-LHDDWV-SSVKGA------SKWILTGSYDGTS--------RIWD-LKGKSIKTIVGHTGPI-K  148 (423)
T ss_pred             EEEEEecCCCCccccc-cchhhh-hhhccc------CceEEEeecCCee--------EEEe-cCCceEEEEecCCcce-e
Confidence            4666665555444443 599999 888887      5899999875544        4699 5678999999999998 7


Q ss_pred             EEEEc-----CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEE
Q psy18018         86 CLQFS-----GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG  158 (635)
Q Consensus        86 ~~~~s-----~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~  158 (635)
                      ++++-     ...++++|.|.++++|.++.++..                 -+.+..-+||..+|.+++.  ++.++++|
T Consensus       149 ~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg  211 (423)
T KOG0313|consen  149 SVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------VKALKVCRGHKRSVDSVSVDSSGTRFCSG  211 (423)
T ss_pred             eeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------hhHHhHhcccccceeEEEecCCCCeEEee
Confidence            77775     446999999999999988766532                 1223333499999999998  89999999


Q ss_pred             eCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEE
Q psy18018        159 AYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIII  237 (635)
Q Consensus       159 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~  237 (635)
                      +.|.++.||+..+.. .........         ..+      ...-+-=...++.++-++.||..+|.++.|. ...++
T Consensus       212 S~D~~lkiWs~~~~~-~~~~E~~s~---------~rr------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~y  275 (423)
T KOG0313|consen  212 SWDTMLKIWSVETDE-EDELESSSN---------RRR------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIY  275 (423)
T ss_pred             cccceeeecccCCCc-cccccccch---------hhh------hhhhhhhcccccCceEEecccccceeeEEEcCCCceE
Confidence            999999999933221 111100000         000      0000000113467788999999999999995 78899


Q ss_pred             EeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeE
Q psy18018        238 SGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRF  317 (635)
Q Consensus       238 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (635)
                      +++.|-+|+.||+.++....                                                            
T Consensus       276 S~SwDHTIk~WDletg~~~~------------------------------------------------------------  295 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKS------------------------------------------------------------  295 (423)
T ss_pred             eecccceEEEEEeeccccee------------------------------------------------------------
Confidence            99999999999998764321                                                            


Q ss_pred             eecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc---eEEeeeCCCcceeEEEEeCC
Q psy18018        318 LAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMGHQSLTSGMELRNN  394 (635)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~~~~~v~~l~~~~~  394 (635)
                                         .........+++.+|..++|++|+.|..+++||.+++.   ....+.+|...|.++.|++.
T Consensus       296 -------------------~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  296 -------------------TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             -------------------eeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence                               11122334456678888999999999999999998654   45788999999999998732


Q ss_pred             EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc-eeeeeccCCccEEEEEec-CCEEEEE
Q psy18018        395 ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMELR-NNILVSG  472 (635)
Q Consensus       395 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~l~s~  472 (635)
                                                    +...|++++.|+++++||+++.+ ++..+.+|...|.++.|. +..+++|
T Consensus       357 ------------------------------~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSG  406 (423)
T KOG0313|consen  357 ------------------------------NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSG  406 (423)
T ss_pred             ------------------------------CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEec
Confidence                                          33356667777777777777766 888999999999999996 5599999


Q ss_pred             eCCCcEEEEECC
Q psy18018        473 NADSTVKVWDIV  484 (635)
Q Consensus       473 ~~dg~i~iwd~~  484 (635)
                      +.|.+|+|+.-.
T Consensus       407 GaD~~l~i~~~~  418 (423)
T KOG0313|consen  407 GADNKLRIFKGS  418 (423)
T ss_pred             cCcceEEEeccc
Confidence            999999998643

>KOG0278|consensus

Probab=99.98  E-value=8.5e-31  Score=211.42  Aligned_cols=261  Identities=25%  Similarity=0.340  Sum_probs=225.2

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeC--CEEEEEeCCCcEEEEEccCCcc--------eeE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGTK--------KLM  418 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~--------~~~  418 (635)
                      +.|+|-+|++++.||.-.+-+-++|.-+.++.+|.+.|.....+.  ...++++.|=+-++||.-++..        +..
T Consensus        25 itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk  104 (334)
T KOG0278|consen   25 ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVK  104 (334)
T ss_pred             CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheee
Confidence            456889999999999988888889999999999999999988874  3677888999999999888754        344


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  495 (635)
                      ...|+.|.++|++|+.+..+++||++.. .+..++.+|.+.|..+.|  ..+.+++...|++||+||.+++..++.+.  
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--  182 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--  182 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--
Confidence            4568899999999999999999999875 456788999999998887  46688888999999999999999999998  


Q ss_pred             CcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe
Q psy18018        496 NKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT  573 (635)
Q Consensus       496 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  573 (635)
                        ...+|+++..  +|++|.++ ..+.|.+||..+..+++.+..            ...|.+..++|+...+++|++|..
T Consensus       183 --~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~------------P~nV~SASL~P~k~~fVaGged~~  247 (334)
T KOG0278|consen  183 --FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM------------PCNVESASLHPKKEFFVAGGEDFK  247 (334)
T ss_pred             --cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC------------ccccccccccCCCceEEecCcceE
Confidence              5677888888  56666555 467799999999988877654            567889999999999999999999


Q ss_pred             EEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        574 VKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       574 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ++.||..+|+.+..+.    .+|-++|.++.|+|||+..|+|++||+  ++||...+..
T Consensus       248 ~~kfDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~  300 (334)
T KOG0278|consen  248 VYKFDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK  300 (334)
T ss_pred             EEEEeccCCceeeecc----cCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence            9999999999998863    589999999999999999999999999  8888776543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=5.7e-29  Score=233.60  Aligned_cols=281  Identities=35%  Similarity=0.622  Sum_probs=222.3

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIV   95 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~   95 (635)
                      .+.|+||.++| ++++|+    |+++++++++.+        ..+.+|+..+.+....+.+|...+ .++.|+  +++|+
T Consensus         2 ~~~~~~h~~~i-~~~~~~----~~~~~l~~~~~~--------g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~   67 (289)
T cd00200           2 RRTLKGHTGGV-TCVAFS----PDGKLLATGSGD--------GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLA   67 (289)
T ss_pred             chHhcccCCCE-EEEEEc----CCCCEEEEeecC--------cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEE
Confidence            36788999998 999999    899999999864        344569999998888999999887 789998  67899


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc
Q psy18018         96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE  173 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~  173 (635)
                      +++.|+.|++||+.++                     +.+..+..|...|.++.|  +++++++++.||.+++||+.+++
T Consensus        68 ~~~~~~~i~i~~~~~~---------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  126 (289)
T cd00200          68 SGSSDKTIRLWDLETG---------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK  126 (289)
T ss_pred             EEcCCCeEEEEEcCcc---------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence            9998988888887643                     455667789999999999  55788888889999999999888


Q ss_pred             ceeeccccceeEEeeeccC-CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccc
Q psy18018        174 CLHAELQETEVELSHGYAL-RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~  252 (635)
                      ....+..+........+.+ +..+++++.++.|++||+.+++.+..+..|...+.++.                      
T Consensus       127 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~----------------------  184 (289)
T cd00200         127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA----------------------  184 (289)
T ss_pred             EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEE----------------------
Confidence            7777665544444444444 56666666699999999988877777776666555554                      


Q ss_pred             eeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhh
Q psy18018        253 RILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEA  332 (635)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (635)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (289)
T cd00200         185 --------------------------------------------------------------------------------  184 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccC
Q psy18018        333 ATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       333 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~  412 (635)
                                      ++|+++.+++++.++.|++||+.+++.+..+..|...+.++.++                    
T Consensus       185 ----------------~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--------------------  228 (289)
T cd00200         185 ----------------FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS--------------------  228 (289)
T ss_pred             ----------------ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc--------------------
Confidence                            56666677777778888888888877777777787788888776                    


Q ss_pred             CcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEE
Q psy18018        413 GTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWD  482 (635)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd  482 (635)
                                 +++.++++++.++.+++|++.+++....+..|...+.++.+++  +.+++++.|+.+++|+
T Consensus       229 -----------~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         229 -----------PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -----------CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                       3344455555677788888877888888888999999999865  7999999999999996

>KOG1407|consensus

Probab=99.97  E-value=7.3e-29  Score=201.73  Aligned_cols=266  Identities=20%  Similarity=0.356  Sum_probs=227.0

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE--eeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcce
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH--TLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      .....+++..+|..+++|+.|+.+.+|++...+...  ..++|.+.|..++|+   ++.+++++.|.+|++||+..+++.
T Consensus        21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence            344567889999999999999999999998775443  457899999999997   779999999999999999998876


Q ss_pred             eEEE--------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018        417 LMFR--------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       417 ~~~~--------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~  486 (635)
                      ....        .++|+|+++++++.|..|.+.|.++.+.....+- .-.+..++|  ++++++.....|.|.|.....-
T Consensus       101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL  179 (313)
T KOG1407|consen  101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL  179 (313)
T ss_pred             EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence            6544        5899999999999999999999998877665542 334445555  5678888888899999999999


Q ss_pred             ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                      +++..++.   |.....|+.|  +|+++|+|+.|..+.+||+...-+++.+..           +.-+|..+.||.||++
T Consensus       180 kpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----------ldwpVRTlSFS~dg~~  245 (313)
T KOG1407|consen  180 KPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----------LDWPVRTLSFSHDGRM  245 (313)
T ss_pred             cccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----------ccCceEEEEeccCcce
Confidence            99999887   8888889998  599999999999999999998776666654           5779999999999999


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee-------EeEEEEE
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE-------ETKLLVL  628 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~-------~~~l~~~  628 (635)
                      ||+|++|..|-|=++++|..+..+      .+.++...++|.|...+||-++.|..-       .+|+|.+
T Consensus       246 lASaSEDh~IDIA~vetGd~~~eI------~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  246 LASASEDHFIDIAEVETGDRVWEI------PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             eeccCccceEEeEecccCCeEEEe------eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            999999999999999999999999      578899999999999999998887643       3666654

>KOG0643|consensus

Probab=99.97  E-value=8.3e-29  Score=202.07  Aligned_cols=266  Identities=21%  Similarity=0.320  Sum_probs=219.1

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      .+..-+.++.+|.+|++++.|....+|-..+|+.+.++.+|++.|.++..+  .+.+++|+.|.++++||+++++.....
T Consensus        11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~   90 (327)
T KOG0643|consen   11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW   90 (327)
T ss_pred             cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence            344556788899999999999999999999999999999999999999887  779999999999999999999988776


Q ss_pred             EE--------EeeCCcEEEEEeC-----CCcEEEEeCC-------CCceeeeeccCCccEEEEEec--CCEEEEEeCCCc
Q psy18018        420 RI--------CLFDGVHVVSGSL-----DTSIRVWEAE-------SGNLRHTLMGHQSLTSGMELR--NNILVSGNADST  477 (635)
Q Consensus       420 ~~--------~~~~~~~l~~~~~-----d~~i~~~d~~-------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  477 (635)
                      ..        |+++|++++....     .+.|.++|++       ..++...+..+.+.++.+-|.  ++.+++|.+||.
T Consensus        91 k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~  170 (327)
T KOG0643|consen   91 KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS  170 (327)
T ss_pred             ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence            64        6778888777654     3679999988       345677777888888887774  779999999999


Q ss_pred             EEEEECCCCceeE-EecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCcee
Q psy18018        478 VKVWDIVSGQCLQ-TLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL  554 (635)
Q Consensus       478 i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  554 (635)
                      |.+||.++++... ....   |...|+.+++  +..++++++.|.+-++||..+.+.++++..            ..+|+
T Consensus       171 is~~da~~g~~~v~s~~~---h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------------e~PvN  235 (327)
T KOG0643|consen  171 ISIYDARTGKELVDSDEE---HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------------ERPVN  235 (327)
T ss_pred             EEEEEcccCceeeechhh---hccccccccccCCcceEEecccCccceeeeccceeeEEEeee------------ccccc
Confidence            9999999985443 3333   8889999999  789999999999999999999999888875            67899


Q ss_pred             cccccCCCeEEEEecCCCe--E------------EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        555 CPHLQFNSRFVITSSDDGT--V------------KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       555 ~~~~s~~~~~l~~~~~d~~--v------------~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      +.+++|....++.|+....  |            ++|++-..|.+..+     .+|-++|.+++|+|||+..++|++||.
T Consensus       236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-----kGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-----KGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-----cccccCcceeEECCCCcccccCCCCce
Confidence            9999998887777654322  2            22333333445555     589999999999999999999999999


Q ss_pred             eEeEEEEEe
Q psy18018        621 EETKLLVLD  629 (635)
Q Consensus       621 ~~~~l~~~d  629 (635)
                        |++.-+|
T Consensus       311 --VR~h~Fd  317 (327)
T KOG0643|consen  311 --VRLHHFD  317 (327)
T ss_pred             --EEEEEec
Confidence              5555554

>KOG0278|consensus

Probab=99.97  E-value=9.9e-30  Score=205.30  Aligned_cols=286  Identities=21%  Similarity=0.306  Sum_probs=224.6

Q ss_pred             CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEE
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRI   94 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l   94 (635)
                      .+.+..||+.+| --|+|||.. |+|-+|.+++.+.      .++  +-+..++.-+-+|.||.+.| .....+  ..+-
T Consensus         6 ~pl~c~ghtrpv-vdl~~s~it-p~g~flisa~kd~------~pm--lr~g~tgdwigtfeghkgav-w~~~l~~na~~a   74 (334)
T KOG0278|consen    6 TPLTCHGHTRPV-VDLAFSPIT-PDGYFLISASKDG------KPM--LRNGDTGDWIGTFEGHKGAV-WSATLNKNATRA   74 (334)
T ss_pred             CceEEcCCCcce-eEEeccCCC-CCceEEEEeccCC------Cch--hccCCCCCcEEeeeccCcce-eeeecCchhhhh
Confidence            346778999999 699999876 9999999998753      222  35677888899999999998 677777  5666


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      |+++.|=+-+|||.-+|                     ..++.| .|..-|.+++|  |.++|++|+.+..+|++|++..
T Consensus        75 asaaadftakvw~a~tg---------------------delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p  132 (334)
T KOG0278|consen   75 ASAAADFTAKVWDAVTG---------------------DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP  132 (334)
T ss_pred             hhhcccchhhhhhhhhh---------------------hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence            77888887777776644                     455666 68899999999  8999999999999999999876


Q ss_pred             cc-eeecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEec
Q psy18018        173 EC-LHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWS  249 (635)
Q Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~  249 (635)
                      +. ...+..+ ..+....+...+..+++.+.|++|++||.+++..++++. -..+|.++.++ ...+++....+.|.+||
T Consensus       133 ~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwd  211 (334)
T KOG0278|consen  133 KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWD  211 (334)
T ss_pred             CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEec
Confidence            53 3444444 445566666778899999999999999999999999986 46678888884 55677777788999999


Q ss_pred             ccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhh
Q psy18018        250 NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC  329 (635)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (635)
                      ...-.+..                                                                        
T Consensus       212 aksf~~lK------------------------------------------------------------------------  219 (334)
T KOG0278|consen  212 AKSFGLLK------------------------------------------------------------------------  219 (334)
T ss_pred             ccccccee------------------------------------------------------------------------
Confidence            76532110                                                                        


Q ss_pred             hhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee-eCCCcceeEEEEe--CCEEEEEeCCCcEE
Q psy18018        330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NNILVSGNADSTVK  406 (635)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~~v~~l~~~--~~~l~s~~~dg~i~  406 (635)
                             ...........+++|+...+++|++|..++.||..+++.+..+ ++|-++|.|+.|+  +...++|+.||+|+
T Consensus       220 -------s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir  292 (334)
T KOG0278|consen  220 -------SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR  292 (334)
T ss_pred             -------eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence                   1122233444568899999999999999999999999999886 9999999999997  55777777788888


Q ss_pred             EEEccCCcc
Q psy18018        407 VWDIVSGTK  415 (635)
Q Consensus       407 iwd~~~~~~  415 (635)
                      +|....++.
T Consensus       293 lWQt~~~~~  301 (334)
T KOG0278|consen  293 LWQTTPGKT  301 (334)
T ss_pred             EEEecCCCc
Confidence            877665443

>KOG0299|consensus

Probab=99.97  E-value=2.1e-28  Score=215.22  Aligned_cols=231  Identities=22%  Similarity=0.357  Sum_probs=183.2

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      ++++++||++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|.  .+.                            
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~----------------------------  258 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE----------------------------  258 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc----------------------------
Confidence            34589999999999999999999999999999999999999999996  233                            


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                           +++++.|+.+++|+++....+.++.+|+..|.++..-  ++.+-+|+.|+++++|++.... .-.+.+   +.+.
T Consensus       259 -----lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg---~~~s  329 (479)
T KOG0299|consen  259 -----LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG---GEGS  329 (479)
T ss_pred             -----eeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeC---CCCC
Confidence                 4555666667777777788889999999999999873  4455556699999999996443 333444   7788


Q ss_pred             EEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCce-eEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        502 VTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF-YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       502 v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      +-|++| |...+++|+.||.|.+|++.+.+.+..........+. ....++..|++++..|...++|+|+.+|.|++|-+
T Consensus       330 idcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  330 IDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            999999 9999999999999999999988877666554333332 22333457999999999999999999999999999


Q ss_pred             CCCce-EEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        580 KTGEF-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       580 ~~~~~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      .++-. +..+..   -...+-|.+|+|+++|+.|++|.
T Consensus       410 ~~g~r~i~~l~~---ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  410 EDGLRAINLLYS---LSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             cCCccccceeee---cccccEEEEEEEccCCCEEEEec
Confidence            88722 222221   24678999999999999666653

>KOG0275|consensus

Probab=99.97  E-value=7.7e-30  Score=213.93  Aligned_cols=276  Identities=26%  Similarity=0.361  Sum_probs=225.6

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCcee--------eccCcceEEEEEEc--CC
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVL--------KGHDDHVITCLQFS--GS   92 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l--------~~h~~~vi~~~~~s--~~   92 (635)
                      |....+ .|..||    |||+||++++.++.+-        +|+.-+|+..+-|        ..|.+.| .|+.||  ..
T Consensus       211 g~KSh~-EcA~FS----PDgqyLvsgSvDGFiE--------VWny~~GKlrKDLkYQAqd~fMMmd~aV-lci~FSRDsE  276 (508)
T KOG0275|consen  211 GQKSHV-ECARFS----PDGQYLVSGSVDGFIE--------VWNYTTGKLRKDLKYQAQDNFMMMDDAV-LCISFSRDSE  276 (508)
T ss_pred             ccccch-hheeeC----CCCceEeeccccceee--------eehhccchhhhhhhhhhhcceeecccce-EEEeecccHH
Confidence            556666 899999    9999999999865544        6999999876654        3677777 899999  78


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee-CCCcceEEEEe--cCCEEEEEeCCCeEEEEeC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV-GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~-~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~  169 (635)
                      .||+|+.||.|++|.+.+                     |++++.|. +|+..|+|+.|  |+..+.+++.|.++|+--+
T Consensus       277 MlAsGsqDGkIKvWri~t---------------------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  277 MLASGSQDGKIKVWRIET---------------------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL  335 (508)
T ss_pred             HhhccCcCCcEEEEEEec---------------------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence            899999988888887764                     55667776 89999999999  9999999999999999999


Q ss_pred             CCccceeeccccceeEEeeec-cCCCEEEEEeCCCcEEEEECCCCeEEEEEeC--CCCCeEEEEe---eCCEEEEeeCce
Q psy18018        170 DTEECLHAELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSATTGKCLRTLIG--HTGGVWSSQM---AGNIIISGSTDR  243 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~---~~~~l~s~~~dg  243 (635)
                      .+|+.+..+.++...+....+ +++.++++++.||+|++|+..+.+++.+++.  ...+|.++-.   +...++.+...+
T Consensus       336 KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  336 KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             ccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            999999999999876655554 5678999999999999999999999988864  4456777665   578899999999


Q ss_pred             eEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCc
Q psy18018        244 TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL  323 (635)
Q Consensus       244 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (635)
                      ++.+-++........                                         +                       
T Consensus       416 tv~imn~qGQvVrsf-----------------------------------------s-----------------------  431 (508)
T KOG0275|consen  416 TVYIMNMQGQVVRSF-----------------------------------------S-----------------------  431 (508)
T ss_pred             eEEEEeccceEEeee-----------------------------------------c-----------------------
Confidence            999998776432110                                         0                       


Q ss_pred             chhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeC
Q psy18018        324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNA  401 (635)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~  401 (635)
                                  .....+...-..+++|.|.++.+.++|+.++.|...+|.....+..|...+..++-.  .+.+++-+.
T Consensus       432 ------------SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE  499 (508)
T KOG0275|consen  432 ------------SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE  499 (508)
T ss_pred             ------------cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence                        001111223345689999999999999999999999999999999999999998876  578889999


Q ss_pred             CCcEEEEE
Q psy18018        402 DSTVKVWD  409 (635)
Q Consensus       402 dg~i~iwd  409 (635)
                      ||.+++|.
T Consensus       500 DgllKLWk  507 (508)
T KOG0275|consen  500 DGLLKLWK  507 (508)
T ss_pred             cchhhhcC
Confidence            99999884

>KOG0288|consensus

Probab=99.96  E-value=4.9e-29  Score=215.99  Aligned_cols=288  Identities=24%  Similarity=0.365  Sum_probs=220.1

Q ss_pred             CeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        213 GKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       213 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                      ......+..|.+.+..+.|-  ...|++|+.|..|++|+...........                              
T Consensus       165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t------------------------------  214 (459)
T KOG0288|consen  165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST------------------------------  214 (459)
T ss_pred             hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh------------------------------
Confidence            34445677899999999993  5899999999999999976543111000                              


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA  370 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~  370 (635)
                                                                    ..........+.+.+++.++++++.|+.+++|+.
T Consensus       215 ----------------------------------------------LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  215 ----------------------------------------------LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             ----------------------------------------------hhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence                                                          0112233455678889999999999999999999


Q ss_pred             cCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce
Q psy18018        371 ESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL  448 (635)
Q Consensus       371 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  448 (635)
                      .+.+...++.+|+..|+++.|.  ...+++++.|.++++||+                                 ....+
T Consensus       249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl---------------------------------~k~~C  295 (459)
T KOG0288|consen  249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL---------------------------------QKAYC  295 (459)
T ss_pred             cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh---------------------------------hhhhe
Confidence            9999999999999999999886  222555555555555554                                 44444


Q ss_pred             eeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018        449 RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       449 ~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~  526 (635)
                      ..++. ..+.+..+...+..+++|-.|++|++||.++..+......    .+.|+++..  ++..+.+.+.|.++.+.|+
T Consensus       296 ~kt~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  296 SKTVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             ecccc-ccccccceEecceeeeecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeec
Confidence            33332 1233444455567788999999999999999999888875    347888777  7889999999999999999


Q ss_pred             CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      ++.+...++......       -....+.+.|||++.|+|+|+.||.|+||++.++++...+..   ......|++++|+
T Consensus       371 Rt~eI~~~~sA~g~k-------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~---s~s~~aI~s~~W~  440 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFK-------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL---STSNAAITSLSWN  440 (459)
T ss_pred             ccccEEEEeeccccc-------cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc---CCCCcceEEEEEc
Confidence            999877776543211       133588999999999999999999999999999999888753   2233379999999


Q ss_pred             CCCeEEEEccCCCeeEeEEE
Q psy18018        607 ETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~  626 (635)
                      |.|..|++++.++.  +.+|
T Consensus       441 ~sG~~Llsadk~~~--v~lW  458 (459)
T KOG0288|consen  441 PSGSGLLSADKQKA--VTLW  458 (459)
T ss_pred             CCCchhhcccCCcc--eEec
Confidence            99999999999998  5565

>KOG2048|consensus

Probab=99.96  E-value=2.3e-24  Score=199.27  Aligned_cols=477  Identities=16%  Similarity=0.155  Sum_probs=318.1

Q ss_pred             eeeeecCCCCCC-ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEE
Q psy18018          7 EINWRTRPIKDP-KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVIT   85 (635)
Q Consensus         7 ~~~~~~~~~~~~-~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~   85 (635)
                      +.-|+..+...+ +++.||.++-|..++|+    +.+++..++-.         +.+..||+.++++...+..-.+.+ .
T Consensus        49 IEiwN~~~~w~~~~vi~g~~drsIE~L~W~----e~~RLFS~g~s---------g~i~EwDl~~lk~~~~~d~~gg~I-W  114 (691)
T KOG2048|consen   49 IEIWNLSNNWFLEPVIHGPEDRSIESLAWA----EGGRLFSSGLS---------GSITEWDLHTLKQKYNIDSNGGAI-W  114 (691)
T ss_pred             EEEEccCCCceeeEEEecCCCCceeeEEEc----cCCeEEeecCC---------ceEEEEecccCceeEEecCCCcce-e
Confidence            445666655554 78889999888999999    88888877653         344459999999999998887777 8


Q ss_pred             EEEEc--CCEEEEeeCCCcEEEEECCCCcEE-----------------------EEEeeCCCcEEEEeCCCCeEEEEee-
Q psy18018         86 CLQFS--GSRIVSGSDDNTLKVWSATTGKCL-----------------------LVSGSRDATLRVWHIESGECLHVLV-  139 (635)
Q Consensus        86 ~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l-----------------------l~~~~~dg~i~vwd~~~~~~~~~l~-  139 (635)
                      +++.+  +..++.|++||.+...++..++..                       +++|+.||.|++||+.++..+.... 
T Consensus       115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~  194 (691)
T KOG2048|consen  115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM  194 (691)
T ss_pred             EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence            99999  888999999998888887765432                       8999999999999999998776221 


Q ss_pred             -------CCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeec-cCCCEEEEEeCCCcEEEEEC
Q psy18018        140 -------GHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       140 -------~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~  210 (635)
                             +...-|+++.| ....|++|..-|+|.+||...+..+.....+..-+.+... ..++++++++.|+.|..+..
T Consensus       195 ~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  195 QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             cccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence                   13445778888 8889999999999999999999999888777665555554 45699999999999999987


Q ss_pred             CCCeE----EEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceee
Q psy18018        211 TTGKC----LRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFIS  286 (635)
Q Consensus       211 ~~~~~----~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (635)
                      .+.+.    ......|...|.+++.-+..+++|+.|.++.+-..........                            
T Consensus       275 ~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h----------------------------  326 (691)
T KOG2048|consen  275 TTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDH----------------------------  326 (691)
T ss_pred             cCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhh----------------------------
Confidence            66533    2334679999999999888999999999998765433111000                            


Q ss_pred             ccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccC-CCceEEEEecCcEEEEecCCCeE
Q psy18018        287 LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH-VPDLFGFQFDGVHVVSGSLDTSI  365 (635)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~dg~i  365 (635)
                                                                        ..+..+ ....+...|. ++|+.-=.+..+
T Consensus       327 --------------------------------------------------~~~~~~p~~~~v~~a~~-~~L~~~w~~h~v  355 (691)
T KOG2048|consen  327 --------------------------------------------------RQKNLFPASDRVSVAPE-NRLLVLWKAHGV  355 (691)
T ss_pred             --------------------------------------------------hccccccccceeecCcc-ceEEEEeccccc
Confidence                                                              000000 0111112222 223333334456


Q ss_pred             EEEEccCCc---------eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee--------------EEE
Q psy18018        366 RVWEAESGN---------LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL--------------MFR  420 (635)
Q Consensus       366 ~v~~~~~~~---------~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~  420 (635)
                      .+|.+.+..         +.+........|.+-+.+  ++.++.+. =..+++|.++......              ...
T Consensus       356 ~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i  434 (691)
T KOG2048|consen  356 DLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAI  434 (691)
T ss_pred             cceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceee
Confidence            666665441         111222233455555555  55555544 3456777766533221              122


Q ss_pred             EEeeCCcEEEEEe-CCCcEEEEeCCCCcee--eeec--cCCccEEEEE--ecCCEEEEEeCCCcEEEEECCCCceeEEec
Q psy18018        421 ICLFDGVHVVSGS-LDTSIRVWEAESGNLR--HTLM--GHQSLTSGME--LRNNILVSGNADSTVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       421 ~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~--~~~~--~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  493 (635)
                      .++-++..++..+ ....+..+++++....  ..+.  +....|+.+.  .+|+++++.+.+|.|.+|++++.+......
T Consensus       435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~  514 (691)
T KOG2048|consen  435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV  514 (691)
T ss_pred             EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh
Confidence            3566777777766 6778888887765332  2222  2233455444  478999999999999999999876544442


Q ss_pred             CCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        494 GRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       494 ~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      .   ....++++++   +-+.++.+..++++.-||++..+...-.......-|.........+..+.|+|..+..+..-.
T Consensus       515 r---ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~  591 (691)
T KOG2048|consen  515 R---LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD  591 (691)
T ss_pred             c---cCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc
Confidence            3   3466777777   467888899999999999965543222211111112222234556778888877666555555


Q ss_pred             CCeEEEEeCC
Q psy18018        571 DGTVKLWDVK  580 (635)
Q Consensus       571 d~~v~iwd~~  580 (635)
                      .+.+.+.|..
T Consensus       592 a~w~~~id~~  601 (691)
T KOG2048|consen  592 AHWSCLIDFS  601 (691)
T ss_pred             CcEEEEEecC
Confidence            6667777753

>KOG0275|consensus

Probab=99.96  E-value=7.8e-29  Score=207.91  Aligned_cols=268  Identities=24%  Similarity=0.366  Sum_probs=228.8

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE--------eeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEcc
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH--------TLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--------~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~  411 (635)
                      ....+..|+|||++|++|+.||.|.+|+..+|+..+        .+..+...|.|+.|+  ..++++|+.||.|++|.+.
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            445677899999999999999999999999987654        345678899999998  5699999999999999999


Q ss_pred             CCcceeEE----------EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEE
Q psy18018        412 SGTKKLMF----------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVK  479 (635)
Q Consensus       412 ~~~~~~~~----------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~  479 (635)
                      ++.+...+          ..|+.|+..+++++.|.++++.-+.+|+++.++++|.+.|+...|  +|+.+++++.||+|+
T Consensus       294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence            98765443          348889999999999999999999999999999999999998887  688999999999999


Q ss_pred             EEECCCCceeEEecCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        480 VWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      +|+.++.+++.+++... ...+|..+-.   +...++++...+++++-++. |+.++.+.....        -.+...+.
T Consensus       374 vW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR--------EgGdFi~~  443 (508)
T KOG0275|consen  374 VWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR--------EGGDFINA  443 (508)
T ss_pred             EecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc--------cCCceEEE
Confidence            99999999999988533 4556666665   78889999999999999987 666665543211        24456677


Q ss_pred             cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        557 HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       557 ~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      ++||.|.++.+.++|+.++-+.+.+|++-..+.     -|..-+..++-.|...+||+-++||.  .++|
T Consensus       444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-----VhEkdvIGl~HHPHqNllAsYsEDgl--lKLW  506 (508)
T KOG0275|consen  444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-----VHEKDVIGLTHHPHQNLLASYSEDGL--LKLW  506 (508)
T ss_pred             EecCCCcEEEEEccCcEEEEEEeecCceeeeee-----cccccccccccCcccchhhhhcccch--hhhc
Confidence            899999999999999999999999999988884     56777889999999999999999998  6666

>KOG1446|consensus

Probab=99.96  E-value=3.9e-26  Score=191.96  Aligned_cols=290  Identities=18%  Similarity=0.282  Sum_probs=229.9

Q ss_pred             CeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeC--CCcEE
Q psy18018        132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSD--DNTLK  206 (635)
Q Consensus       132 ~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--dg~i~  206 (635)
                      .++.+.+..-.+.|+++.|  +|..|++++.|-++++||..+++.++.+....- +....+....+.++.++.  |.+|+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            3455566667889999999  899999999999999999999999988776643 444444455667777766  88999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccce
Q psy18018        207 VWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF  284 (635)
Q Consensus       207 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (635)
                      ..++.+.+.++.+.||...|.++..+  ++.+++++.|++|++||++......                           
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg---------------------------  136 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG---------------------------  136 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce---------------------------
Confidence            99999999999999999999999985  7899999999999999987532110                           


Q ss_pred             eeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCe
Q psy18018        285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTS  364 (635)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  364 (635)
                                                                           ........+.++.|+|-.+|++.....
T Consensus       137 -----------------------------------------------------~l~~~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen  137 -----------------------------------------------------LLNLSGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             -----------------------------------------------------EEecCCCcceeECCCCcEEEEecCCCe
Confidence                                                                 112234456789999999999999999


Q ss_pred             EEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc-CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC
Q psy18018        365 IRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV-SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA  443 (635)
Q Consensus       365 i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  443 (635)
                      |++||++.-..        ++-..+                   -+. .........-++|||++++.++..+.+++.|.
T Consensus       164 IkLyD~Rs~dk--------gPF~tf-------------------~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  164 IKLYDLRSFDK--------GPFTTF-------------------SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             EEEEEecccCC--------CCceeE-------------------ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence            99999874221        111111                   111 22233444458999999999999999999999


Q ss_pred             CCCceeeeeccCCcc-----EEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC
Q psy18018        444 ESGNLRHTLMGHQSL-----TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD  518 (635)
Q Consensus       444 ~~~~~~~~~~~~~~~-----v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d  518 (635)
                      -+|..+.++.++...     -.++.++++++++|+.||+|.+|+++++..+..+.++  +..++.++.|+.++..-++.+
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeecC
Confidence            999999999887652     2345578999999999999999999999999999874  678899999999998888888


Q ss_pred             CcEEEEECCCCc
Q psy18018        519 GTVKLWDVKTGE  530 (635)
Q Consensus       519 ~~i~vwd~~~~~  530 (635)
                      ..+.+|-....+
T Consensus       295 s~l~fw~p~~~~  306 (311)
T KOG1446|consen  295 SNLVFWLPDEDA  306 (311)
T ss_pred             ceEEEEeccccc
Confidence            999999766443

>KOG0294|consensus

Probab=99.96  E-value=6.5e-27  Score=195.80  Aligned_cols=240  Identities=20%  Similarity=0.336  Sum_probs=192.0

Q ss_pred             EEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC---CEEEEEeCCCcEEEEEC
Q psy18018        134 CLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR---SRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       134 ~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~  210 (635)
                      ++..+..|.++|++++.++.++|+|+.|-+|+|||+.....+..+..+...+.++.|.+.   +.|++|+.||.|.+|+.
T Consensus        35 ~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             ccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence            356778999999999999999999999999999999999999888888776666655543   38999999999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecc
Q psy18018        211 TTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL  288 (635)
Q Consensus       211 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (635)
                      ...+++.++++|.+.|+.++.  ++.+-++.+.|+.++.||+-.+.....                              
T Consensus       115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v------------------------------  164 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV------------------------------  164 (362)
T ss_pred             CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee------------------------------
Confidence            999999999999999999998  488999999999999999876543211                              


Q ss_pred             ccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEE
Q psy18018        289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW  368 (635)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~  368 (635)
                                                                       ....+....+.|+|.|.+++.+..+ .|-+|
T Consensus       165 -------------------------------------------------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~  194 (362)
T KOG0294|consen  165 -------------------------------------------------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIY  194 (362)
T ss_pred             -------------------------------------------------eccCCcceeeEEcCCCCEEEEEecc-EEEEE
Confidence                                                             1112333446799999999888876 48899


Q ss_pred             EccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce
Q psy18018        369 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL  448 (635)
Q Consensus       369 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  448 (635)
                      .+.+......+... ..+.++.|                                -++..|++|..|+.|.+||..+..+
T Consensus       195 q~d~A~v~~~i~~~-~r~l~~~~--------------------------------l~~~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  195 QLDNASVFREIENP-KRILCATF--------------------------------LDGSELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             ecccHhHhhhhhcc-ccceeeee--------------------------------cCCceEEEecCCceEEEeccCCCcc
Confidence            98876655444332 23333333                                2445667777777788888888888


Q ss_pred             eeeeccCCccEEEEEe-c---CCEEEEEeCCCcEEEEECCCC
Q psy18018        449 RHTLMGHQSLTSGMEL-R---NNILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       449 ~~~~~~~~~~v~~~~~-~---~~~l~s~~~dg~i~iwd~~~~  486 (635)
                      ...+.+|..+|.++.+ .   +.+|++++.||.|++||++..
T Consensus       242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9999999999999985 2   359999999999999999765

>KOG0301|consensus

Probab=99.96  E-value=3.5e-27  Score=218.19  Aligned_cols=276  Identities=27%  Similarity=0.489  Sum_probs=219.5

Q ss_pred             CCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE-E
Q psy18018         71 KDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC-V  148 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~-l  148 (635)
                      +..+++.||...| +.+++. +..++++|+||++++|+-..++.                   -....+.+|.+-|.+ +
T Consensus         5 ~ls~~l~gH~~DV-r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~-------------------l~~~~~~~~~g~i~~~i   64 (745)
T KOG0301|consen    5 KLSHELEGHKSDV-RAVAVTDGVCIISGSRDGTVKVWAKKGKQY-------------------LETHAFEGPKGFIANSI   64 (745)
T ss_pred             eeEEEeccCccch-heeEecCCeEEeecCCCCceeeeeccCccc-------------------ccceecccCcceeeccc
Confidence            4567899999998 888887 77899999999999998754332                   223556788888887 7


Q ss_pred             Ee---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        149 QY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       149 ~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                      ++   ++.+|++|+.|.++.+|.+....++..+.+|...+++........+++|+.|.++++|..  +++...+.+|+..
T Consensus        65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~as  142 (745)
T KOG0301|consen   65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTAS  142 (745)
T ss_pred             eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchh
Confidence            77   567899999999999999999999999999998888888777777999999999999964  6777789999999


Q ss_pred             eEEEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        226 VWSSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       226 v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      |+++.. ..+                                                                      
T Consensus       143 VWAv~~l~e~----------------------------------------------------------------------  152 (745)
T KOG0301|consen  143 VWAVASLPEN----------------------------------------------------------------------  152 (745)
T ss_pred             eeeeeecCCC----------------------------------------------------------------------
Confidence            998774 122                                                                      


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS  384 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~  384 (635)
                                                                        .+++|+.|..|++|.-  ++.++++.+|..
T Consensus       153 --------------------------------------------------~~vTgsaDKtIklWk~--~~~l~tf~gHtD  180 (745)
T KOG0301|consen  153 --------------------------------------------------TYVTGSADKTIKLWKG--GTLLKTFSGHTD  180 (745)
T ss_pred             --------------------------------------------------cEEeccCcceeeeccC--Cchhhhhccchh
Confidence                                                              3556666666666653  677788999999


Q ss_pred             ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe
Q psy18018        385 LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL  464 (635)
Q Consensus       385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  464 (635)
                      -|.+++.-+                                +..+++++.||.|++|++ +++.+.++.+|++-+.+++.
T Consensus       181 ~VRgL~vl~--------------------------------~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  181 CVRGLAVLD--------------------------------DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             heeeeEEec--------------------------------CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence            999998742                                223555556666666666 58888999999999999884


Q ss_pred             --cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018        465 --RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       465 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~  528 (635)
                        ++..++++++|++++||+..  ++.+.+..   ....|.++.+ ...-+++|+.||.||||....
T Consensus       228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             cCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence              67799999999999999976  77777774   3446777777 455588899999999999874

>KOG0310|consensus

Probab=99.96  E-value=5.1e-27  Score=208.30  Aligned_cols=263  Identities=21%  Similarity=0.358  Sum_probs=215.7

Q ss_pred             ccCCCceEEEEecC-cEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCC---
Q psy18018        340 KTHVPDLFGFQFDG-VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG---  413 (635)
Q Consensus       340 ~~~~~~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---  413 (635)
                      .......++|+|.. .-+++.+. -.+.+|+..+....+.+......+.++.|.  +.+++.|...|.|+++|+.+.   
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            34556778899943 33554443 469999999888888888888899999996  889999999999999996552   


Q ss_pred             -------cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEEC
Q psy18018        414 -------TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDI  483 (635)
Q Consensus       414 -------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~  483 (635)
                             .+.....+...++..+++|+.|+.+++||+.+......+.+|+..|.+.++.   +.++++|+.||.|++||.
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence                   1222223333467788889999999999999998877999999999999884   459999999999999999


Q ss_pred             CCC-ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC
Q psy18018        484 VSG-QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       484 ~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                      +.. ..+.++.    |..+|..+.+  +|..+++++. ..++|||+.+|........          .|...|+|+++..
T Consensus       184 R~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~----------~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  184 RSLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF----------NHNKTVTCLRLAS  248 (487)
T ss_pred             ccCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh----------cccceEEEEEeec
Confidence            877 6677776    8899999988  6788988875 5699999997654333322          2788999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeE
Q psy18018        561 NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETK  624 (635)
Q Consensus       561 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~  624 (635)
                      ++..|++|+-|+.|++||+.+.+.+..+      ...++|.+++.+||++.+++|..||.+.++
T Consensus       249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  249 DSTRLLSGSLDRHVKVFDTTNYKVVHSW------KYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             CCceEeecccccceEEEEccceEEEEee------ecccceeeEEecCCCceEEEecccceeeee
Confidence            9999999999999999999999999988      457899999999999999999999986555

>KOG0277|consensus

Probab=99.96  E-value=8.9e-28  Score=194.63  Aligned_cols=279  Identities=16%  Similarity=0.303  Sum_probs=213.5

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceee--ccCcceEEEEEEc---CCEEEEeeCCCcEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLK--GHDDHVITCLQFS---GSRIVSGSDDNTLK  104 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~--~h~~~vi~~~~~s---~~~l~s~~~d~~v~  104 (635)
                      .++.|||-. ++.-.+|++...++  . ....++|-|....+-+.++.  .-.+.. ..++|+   .+.+++++.||+++
T Consensus        12 ysvqfSPf~-~nrLavAt~q~yGl--~-G~G~L~ile~~~~~gi~e~~s~d~~D~L-fdV~Wse~~e~~~~~a~GDGSLr   86 (311)
T KOG0277|consen   12 YSVQFSPFV-ENRLAVATAQHYGL--A-GNGRLFILEVTDPKGIQECQSYDTEDGL-FDVAWSENHENQVIAASGDGSLR   86 (311)
T ss_pred             ceeEecccc-cchhheeehhhccc--c-cCceEEEEecCCCCCeEEEEeeecccce-eEeeecCCCcceEEEEecCceEE
Confidence            478999763 44444555554443  2 35556668876555555544  234445 789998   77888899999999


Q ss_pred             EEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeecccc
Q psy18018        105 VWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQE  181 (635)
Q Consensus       105 vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  181 (635)
                      +||..                    ...++++.++.|...|.++.|   +...++++|-|++|++|+...+..+.++.++
T Consensus        87 l~d~~--------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh  146 (311)
T KOG0277|consen   87 LFDLT--------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH  146 (311)
T ss_pred             EeccC--------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence            99854                    234689999999999999999   6788888999999999999999999999999


Q ss_pred             ceeEEeeeccC--CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeee
Q psy18018        182 TEVELSHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILA  256 (635)
Q Consensus       182 ~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~  256 (635)
                      ...+....+++  .+.+++++.|+++++||++..-.-..+..|...+.++.|+   .+.++||+.|+.|+.||++.-...
T Consensus       147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP  226 (311)
T ss_pred             ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence            88887777765  5899999999999999998744344489999999999994   789999999999999998764321


Q ss_pred             ccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhc
Q psy18018        257 IGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLH  336 (635)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (635)
                      ..+                                                                             
T Consensus       227 l~e-----------------------------------------------------------------------------  229 (311)
T KOG0277|consen  227 LFE-----------------------------------------------------------------------------  229 (311)
T ss_pred             cee-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             cccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccC-CceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEc
Q psy18018        337 RNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDI  410 (635)
Q Consensus       337 ~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~  410 (635)
                      ...++...+-+.+|| ....|++++.|-++++||... ...+.+...|+.-+..+.|+   +..+++++.|+.+.+|+.
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            011222333455777 456789999999999999884 44567778899999999887   778888888888888874

>KOG0643|consensus

Probab=99.96  E-value=2.9e-27  Score=193.12  Aligned_cols=294  Identities=20%  Similarity=0.272  Sum_probs=211.3

Q ss_pred             EeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc-CCCEEEEEeCCCcEEEEECCCC
Q psy18018        137 VLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA-LRSRIVSGSDDNTLKVWSATTG  213 (635)
Q Consensus       137 ~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~  213 (635)
                      .+.||..+++.+.+  +|.+|++++.|.+..+|-..+|+.+..+.+|...+.++... ....+++|+.|.++++||+.+|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999  89999999999999999999999999999998877766654 4678999999999999999999


Q ss_pred             eEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccc
Q psy18018        214 KCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE  291 (635)
Q Consensus       214 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (635)
                      +++.+++ -..+|..+.|+  +++++....+ .                                               
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~-~-----------------------------------------------  115 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDK-Q-----------------------------------------------  115 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehh-h-----------------------------------------------
Confidence            9998886 34556666653  3332222111 0                                               


Q ss_pred             eeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEcc
Q psy18018        292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE  371 (635)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~  371 (635)
                                                                                         -+..+.|.++|++
T Consensus       116 -------------------------------------------------------------------mg~~~~v~~fdi~  128 (327)
T KOG0643|consen  116 -------------------------------------------------------------------MGYTCFVSVFDIR  128 (327)
T ss_pred             -------------------------------------------------------------------cCcceEEEEEEcc
Confidence                                                                               0123456677765


Q ss_pred             -------CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCC
Q psy18018        372 -------SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAE  444 (635)
Q Consensus       372 -------~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  444 (635)
                             ..++...+..+.+.++...|                               .|-+++|++|..||.|..||++
T Consensus       129 ~~~~~~~s~ep~~kI~t~~skit~a~W-------------------------------g~l~~~ii~Ghe~G~is~~da~  177 (327)
T KOG0643|consen  129 DDSSDIDSEEPYLKIPTPDSKITSALW-------------------------------GPLGETIIAGHEDGSISIYDAR  177 (327)
T ss_pred             CChhhhcccCceEEecCCccceeeeee-------------------------------cccCCEEEEecCCCcEEEEEcc
Confidence                   23334444444444444443                               3667778888888888888888


Q ss_pred             CC-ceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCC
Q psy18018        445 SG-NLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDG  519 (635)
Q Consensus       445 ~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~  519 (635)
                      +| +.+...+.|...|+.+.+.  ..++++++.|.+-++||..+.+.++++.    ...+|++.++.  ...++.|+...
T Consensus       178 ~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqe  253 (327)
T KOG0643|consen  178 TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQE  253 (327)
T ss_pred             cCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCce
Confidence            87 4556667799999998885  5599999999999999999999999988    56778877773  34455444322


Q ss_pred             --cEEEEECCCCceeeeeccce-ecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        520 --TVKLWDVKTGEFSTPLMSSF-ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       520 --~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                        .|.--+.+.++....+.... ...--....|-++|++++|+|+|+..++|++||.|++.-...
T Consensus       254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence              23333334444333221110 011123446889999999999999999999999999986543

>KOG1445|consensus

Probab=99.96  E-value=3e-27  Score=216.22  Aligned_cols=191  Identities=18%  Similarity=0.296  Sum_probs=145.4

Q ss_pred             eeCCcEEEE--EeCCCcEEEEeCCC-Cceee-eecc--CCccEEEEEec---CCEEEEEeCCCcEEEEECCCCc------
Q psy18018        423 LFDGVHVVS--GSLDTSIRVWEAES-GNLRH-TLMG--HQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQ------  487 (635)
Q Consensus       423 ~~~~~~l~~--~~~d~~i~~~d~~~-~~~~~-~~~~--~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~------  487 (635)
                      ..+..++++  .+..|.|.+|++.. |++.. .+.+  ....|+.+.|+   ...|+++++||.|++|.+..+.      
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~  667 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM  667 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence            334555554  45678999999975 33321 1222  34578888875   5699999999999999987543      


Q ss_pred             -eeEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        488 -CLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       488 -~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                       +-..+..   |...|+++.|.   .+.|++++.|.+|++||+.+++....+.+           |.+.|..++|||||+
T Consensus       668 tPe~~lt~---h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-----------HtdqIf~~AWSpdGr  733 (1012)
T KOG1445|consen  668 TPEKILTI---HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-----------HTDQIFGIAWSPDGR  733 (1012)
T ss_pred             Ccceeeec---ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-----------CcCceeEEEECCCCc
Confidence             3344444   88999999995   68999999999999999999988777766           799999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      .+|+.+.||+|++|+..+++..-.-..   +.....-..+.|..||+++++.+.|+.-...+-.||.
T Consensus       734 ~~AtVcKDg~~rVy~Prs~e~pv~Eg~---gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  734 RIATVCKDGTLRVYEPRSREQPVYEGK---GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             ceeeeecCceEEEeCCCCCCCccccCC---CCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            999999999999999988875322211   2233455678899999999999999876555555553

>KOG0300|consensus

Probab=99.96  E-value=1.7e-27  Score=199.41  Aligned_cols=313  Identities=19%  Similarity=0.289  Sum_probs=229.7

Q ss_pred             eeecCC--CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEE
Q psy18018          9 NWRTRP--IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITC   86 (635)
Q Consensus         9 ~~~~~~--~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~   86 (635)
                      .|+..+  +...+.|.||.+.|+ .++.-    ...-.+++++.+..        -.||.+++++++....||.+.| +|
T Consensus       130 sFk~~t~~~~lvre~~GHkDGiW-~Vaa~----~tqpi~gtASADhT--------A~iWs~Esg~CL~~Y~GH~GSV-Ns  195 (481)
T KOG0300|consen  130 SFKDGTVKFRLVRELEGHKDGIW-HVAAD----STQPICGTASADHT--------ARIWSLESGACLATYTGHTGSV-NS  195 (481)
T ss_pred             eecCCceeEeehhhhccccccee-eehhh----cCCcceeecccccc--------eeEEeeccccceeeecccccce-ee
Confidence            344443  333478999999995 66666    55568888887544        3469999999999999999999 99


Q ss_pred             EEEc--CCEEEEeeCCCcEEEEECC----CCcEEE---EEe-----eCCCcEEEEe-------CCCCeEEEEeeCCCcce
Q psy18018         87 LQFS--GSRIVSGSDDNTLKVWSAT----TGKCLL---VSG-----SRDATLRVWH-------IESGECLHVLVGHLAAV  145 (635)
Q Consensus        87 ~~~s--~~~l~s~~~d~~v~vWd~~----~~~~ll---~~~-----~~dg~i~vwd-------~~~~~~~~~l~~h~~~v  145 (635)
                      +.|+  +.++++++.|++-.||...    ..+..-   .++     ..|....--|       ..-.-++..|.+|.+.|
T Consensus       196 ikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV  275 (481)
T KOG0300|consen  196 IKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVV  275 (481)
T ss_pred             EEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccce
Confidence            9999  8899999999999999821    111000   000     0010000000       00124677899999999


Q ss_pred             EEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEE-eeeccCCCEEEEEeCCCcEEEEECCCC-eEEEEEeC
Q psy18018        146 RCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL-SHGYALRSRIVSGSDDNTLKVWSATTG-KCLRTLIG  221 (635)
Q Consensus       146 ~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~  221 (635)
                      .+..|  .|+.+++++.|.+..+||+++++.+..+.++..... +...+...++++.+.|.+.++||++.. ..+..|+|
T Consensus       276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG  355 (481)
T KOG0300|consen  276 SACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG  355 (481)
T ss_pred             EehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc
Confidence            99999  899999999999999999999999999888765444 444555667788899999999999753 45678999


Q ss_pred             CCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018        222 HTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL  300 (635)
Q Consensus       222 h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (635)
                      |...|++..|. +..+++|+.|.+|++||++.-.....                                          
T Consensus       356 HtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplA------------------------------------------  393 (481)
T KOG0300|consen  356 HTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLA------------------------------------------  393 (481)
T ss_pred             cccceeEEEEecCCceeecCCCceEEEeeeccccCcce------------------------------------------
Confidence            99999999996 88999999999999999876321110                                          


Q ss_pred             CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceE----
Q psy18018        301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR----  376 (635)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~----  376 (635)
                                                          .........-++++..+..++.--.+..|++||++..+..    
T Consensus       394 ------------------------------------TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr  437 (481)
T KOG0300|consen  394 ------------------------------------TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR  437 (481)
T ss_pred             ------------------------------------eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence                                                0011122333456666777888888899999999854432    


Q ss_pred             EeeeCCCcceeEEEEeCC----EEEEEeCCCcEEEEEccCC
Q psy18018        377 HTLMGHQSLTSGMELRNN----ILVSGNADSTVKVWDIVSG  413 (635)
Q Consensus       377 ~~~~~~~~~v~~l~~~~~----~l~s~~~dg~i~iwd~~~~  413 (635)
                      ..-++|...|.|.+|.++    -|++++.|..+.-|+++..
T Consensus       438 tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  438 TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            234689999999999743    5788888888888887653

>KOG1407|consensus

Probab=99.96  E-value=3e-26  Score=186.61  Aligned_cols=272  Identities=19%  Similarity=0.245  Sum_probs=222.1

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCcee--eccCcceEEEEEEc---CCE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVL--KGHDDHVITCLQFS---GSR   93 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l--~~h~~~vi~~~~~s---~~~   93 (635)
                      +.++||...+ .+|+|+    .+|+.||+++.++.+.        +|++...+..+.+  .+|++.| -.+.|+   ..+
T Consensus        14 r~~~~~~~~v-~Sv~wn----~~g~~lasgs~dktv~--------v~n~e~~r~~~~~~~~gh~~sv-dql~w~~~~~d~   79 (313)
T KOG1407|consen   14 RELQGHVQKV-HSVAWN----CDGTKLASGSFDKTVS--------VWNLERDRFRKELVYRGHTDSV-DQLCWDPKHPDL   79 (313)
T ss_pred             HHhhhhhhcc-eEEEEc----ccCceeeecccCCceE--------EEEecchhhhhhhcccCCCcch-hhheeCCCCCcc
Confidence            7889999999 999999    9999999999866554        5999988776654  5899888 688888   788


Q ss_pred             EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         94 IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      +++++.|.+|++||+..+                     +++.......+.|...-. +|++++.++.|..|.+.|..+.
T Consensus        80 ~atas~dk~ir~wd~r~~---------------------k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSG---------------------KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             eEEecCCceEEEEEeccC---------------------cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence            899998888888887655                     445555444455554433 9999999999999999999999


Q ss_pred             cceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccc
Q psy18018        173 ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~  252 (635)
                      +............-.....+++.++.....|+|.|.....-+++.++++|.....++.                      
T Consensus       139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~----------------------  196 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE----------------------  196 (313)
T ss_pred             ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEE----------------------
Confidence            8888777776666666667778888888889999999999999999999986655544                      


Q ss_pred             eeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhh
Q psy18018        253 RILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEA  332 (635)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (635)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (313)
T KOG1407|consen  197 --------------------------------------------------------------------------------  196 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccC
Q psy18018        333 ATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       333 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~  412 (635)
                                      |+|+|++||+|+.|..+.+||++.--+++.+..+.-+|..+.|+                    
T Consensus       197 ----------------f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS--------------------  240 (313)
T KOG1407|consen  197 ----------------FDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS--------------------  240 (313)
T ss_pred             ----------------ECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec--------------------
Confidence                            88899999999999999999999888888898888888888876                    


Q ss_pred             CcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCC
Q psy18018        413 GTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNAD  475 (635)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d  475 (635)
                                 .||++|+++++|..|-+=+.++|..+.+++ +.++...++|+++  +||-+++|
T Consensus       241 -----------~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  241 -----------HDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             -----------cCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence                       566777777777778888888888887776 6778888999876  66666654

>KOG0277|consensus

Probab=99.96  E-value=6.9e-27  Score=189.51  Aligned_cols=266  Identities=17%  Similarity=0.237  Sum_probs=205.6

Q ss_pred             CCceEEEEe-cCcEEEEec-------CCCeEEEEEccCCceEEeee--CCCcceeEEEEe---CCEEEEEeCCCcEEEEE
Q psy18018        343 VPDLFGFQF-DGVHVVSGS-------LDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR---NNILVSGNADSTVKVWD  409 (635)
Q Consensus       343 ~~~~~~~s~-~~~~l~~~~-------~dg~i~v~~~~~~~~~~~~~--~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd  409 (635)
                      ....+.||| -.++|+++.       ..|.+.+.+....+-+..+.  .-...+..++|+   .+.+++++.||++++||
T Consensus        10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence            344566888 333444332       35889999986554444433  235678899997   67999999999999999


Q ss_pred             ccCCccee------EEEEE-----eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec---CCEEEEEeCC
Q psy18018        410 IVSGTKKL------MFRIC-----LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNAD  475 (635)
Q Consensus       410 ~~~~~~~~------~~~~~-----~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~d  475 (635)
                      +.......      ...++     ..++..+++++.|++|++|+..-++.++++.+|...|....++   ++++++++.|
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence            65443211      11122     2356778888999999999999999999999999999998885   6799999999


Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCc
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      +++++||++.......+..   |...+.|+.|   +.+.++||+.|+.|+.||++.-+..          ......|.-.
T Consensus       170 ~~l~lwdvr~~gk~~~i~a---h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----------l~eL~gh~~A  236 (311)
T KOG0277|consen  170 GTLRLWDVRSPGKFMSIEA---HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----------LFELNGHGLA  236 (311)
T ss_pred             ceEEEEEecCCCceeEEEe---ccceeEeecccccCCcEEEecCCCceEEEEehhhcccc----------ceeecCCceE
Confidence            9999999986544444665   8889999999   5899999999999999999976521          1223457889


Q ss_pred             eecccccCCC-eEEEEecCCCeEEEEeCCCCce-EEeeeeccCCCCCceEEEEEeCC-CCeEEEEccCCCeeEeEEEEEe
Q psy18018        553 LLCPHLQFNS-RFVITSSDDGTVKLWDVKTGEF-IRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       553 v~~~~~s~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      |..+.|||.. .+||+++.|-+++|||...+.- +.+.     ..|..-+..+.||+ ++.++|.++-|+.    +++|+
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-----~~HtEFv~g~Dws~~~~~~vAs~gWDe~----l~Vw~  307 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-----DHHTEFVCGLDWSLFDPGQVASTGWDEL----LYVWN  307 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchhhhhhh-----hccceEEeccccccccCceeeecccccc----eeeec
Confidence            9999999964 6899999999999999986544 3333     57889999999998 5669999999998    77776


Q ss_pred             e
Q psy18018        630 F  630 (635)
Q Consensus       630 ~  630 (635)
                      +
T Consensus       308 p  308 (311)
T KOG0277|consen  308 P  308 (311)
T ss_pred             c
Confidence            5

>KOG0646|consensus

Probab=99.96  E-value=3.6e-27  Score=208.01  Aligned_cols=233  Identities=20%  Similarity=0.337  Sum_probs=189.2

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      .+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|...|+++.|+  +.++++++.||.|.+|.+..          
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~----------  154 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD----------  154 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----------
Confidence            345577889999999999999999999999999999999999999997  67999999999999998752          


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                            ++....++        +.++...+..|.-+|+.+...    ..++++++.|.++++||+..+..+..+.    .
T Consensus       155 ------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----f  216 (476)
T KOG0646|consen  155 ------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----F  216 (476)
T ss_pred             ------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----c
Confidence                  55555554        457788899999999999884    2499999999999999999999998887    5


Q ss_pred             cccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeee----eccce-ecCceeEEeccC--ceecccccCCCeEEEEec
Q psy18018        499 QSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTP----LMSSF-ILNPFYFLIYSQ--PLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       499 ~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~-~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~  569 (635)
                      ...+.+++.|  ++.++.|+.+|.|.+.++.+......    -..+. ...-.....|..  .|+|++++-||.+|++|+
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            6778888886  78999999999999988765431111    00111 111123445666  999999999999999999


Q ss_pred             CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018        570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL  610 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  610 (635)
                      .||.|+|||+.+.++++++.     ...++|+.+.+.|=.+
T Consensus       297 ~dg~VcvWdi~S~Q~iRtl~-----~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  297 EDGKVCVWDIYSKQCIRTLQ-----TSKGPVTNLQINPLER  332 (476)
T ss_pred             CCCCEEEEecchHHHHHHHh-----hhccccceeEeecccc
Confidence            99999999999999999883     3577899998865433

>KOG0305|consensus

Probab=99.96  E-value=1.8e-26  Score=213.47  Aligned_cols=230  Identities=22%  Similarity=0.374  Sum_probs=196.3

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF  424 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  424 (635)
                      .+.++++|.+|++|..+|.|.+||..+.+.+..+.+ |...|.+++|+...+.+|+.++.|..+|++..+.         
T Consensus       222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~---------  292 (484)
T KOG0305|consen  222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH---------  292 (484)
T ss_pred             EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchh---------
Confidence            344788899999999999999999998888888888 9999999999988888877777777766653221         


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                                             ....+.+|...|.++.|  ++.++|+|+.|+.+.|||....+++..+..   |...|
T Consensus       293 -----------------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~---H~aAV  346 (484)
T KOG0305|consen  293 -----------------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE---HTAAV  346 (484)
T ss_pred             -----------------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec---cceee
Confidence                                   11237889999999998  577999999999999999988888888887   99999


Q ss_pred             EEEEec---CCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE--ecCCCeEE
Q psy18018        503 TCLQFN---SRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT--SSDDGTVK  575 (635)
Q Consensus       503 ~~~~~~---~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~v~  575 (635)
                      .+++|.   ..+||+|+  .|++|++||..+++.+..+..            ...|.++.|++..+-|++  |..++.|.
T Consensus       347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~  414 (484)
T KOG0305|consen  347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------------GSQVCSLIWSKKYKELLSTHGYSENQIT  414 (484)
T ss_pred             eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------------CCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence            999994   78899876  699999999999998877654            678999999999876665  44667899


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ||+..+.+.+..+     .+|..+|..+++||||+.+++|+.|.+  +++|.+-
T Consensus       415 lw~~ps~~~~~~l-----~gH~~RVl~la~SPdg~~i~t~a~DET--lrfw~~f  461 (484)
T KOG0305|consen  415 LWKYPSMKLVAEL-----LGHTSRVLYLALSPDGETIVTGAADET--LRFWNLF  461 (484)
T ss_pred             EEeccccceeeee-----cCCcceeEEEEECCCCCEEEEecccCc--EEecccc
Confidence            9999999988888     689999999999999999999999999  7777653

>KOG0308|consensus

Probab=99.96  E-value=3.1e-27  Score=216.80  Aligned_cols=346  Identities=20%  Similarity=0.310  Sum_probs=245.5

Q ss_pred             EEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC
Q psy18018         86 CLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY  160 (635)
Q Consensus        86 ~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~  160 (635)
                      ++..+   ++||.|||.||.|++|++.....               ......+..++.|...|+.+..  +++.|+++|.
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss   93 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------EPSTPYIASMEHHSDWVNDIILCGNGKTLISASS   93 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccC---------------CcccchhhhhhhhHhHHhhHHhhcCCCceEEecC
Confidence            45555   78899999999999999864320               0112246788899999999988  8889999999


Q ss_pred             CCeEEEEeCCCc--cceeeccccceeEEeeec--cCCCEEEEEeCCCcEEEEECCCCeE--EEEEeCCCCCeEEEEeeCC
Q psy18018        161 DYMVKIWNPDTE--ECLHAELQETEVELSHGY--ALRSRIVSGSDDNTLKVWSATTGKC--LRTLIGHTGGVWSSQMAGN  234 (635)
Q Consensus       161 dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~  234 (635)
                      |-+|++|+...+  -+...+..|...+.+...  .....+++|+-|+.|.+||++++..  +.++..  -.+.+      
T Consensus        94 DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~--~t~~s------  165 (735)
T KOG0308|consen   94 DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN--VTVNS------  165 (735)
T ss_pred             CceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc--ccccc------
Confidence            999999999877  455566666655544444  4567888899999999999987632  222210  00000      


Q ss_pred             EEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccc
Q psy18018        235 IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRS  314 (635)
Q Consensus       235 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (635)
                       +.+|..                                                                         
T Consensus       166 -l~sG~k-------------------------------------------------------------------------  171 (735)
T KOG0308|consen  166 -LGSGPK-------------------------------------------------------------------------  171 (735)
T ss_pred             -CCCCCc-------------------------------------------------------------------------
Confidence             000000                                                                         


Q ss_pred             eeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC
Q psy18018        315 WRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN  394 (635)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~  394 (635)
                                                 .....++..+.|..++.|+.++.+++||..+++.+-.+++|+..|.++..+  
T Consensus       172 ---------------------------~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~--  222 (735)
T KOG0308|consen  172 ---------------------------DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN--  222 (735)
T ss_pred             ---------------------------cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc--
Confidence                                       111123355567789999999999999999999999999999999888765  


Q ss_pred             EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEE
Q psy18018        395 ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSG  472 (635)
Q Consensus       395 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~  472 (635)
                                                   .||..+++++.||+|++||+...+++.++..|...|.++..++.  .+.+|
T Consensus       223 -----------------------------dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG  273 (735)
T KOG0308|consen  223 -----------------------------DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG  273 (735)
T ss_pred             -----------------------------CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence                                         57778888899999999999999999999999999999888665  89999


Q ss_pred             eCCCcEEEEECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeecc----------ce-
Q psy18018        473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMS----------SF-  539 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~-  539 (635)
                      +.||.|..=|+++......+..   ...+|..+..+  .+-+.+++.|+.|+-|..+-...+.....          +. 
T Consensus       274 ~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~  350 (735)
T KOG0308|consen  274 GRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSC  350 (735)
T ss_pred             CCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccc
Confidence            9999999999988533333332   34455555553  44457778899999998663221111000          00 


Q ss_pred             --ecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        540 --ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       540 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                        ...|.....-..+|..-++-.|.++++|-...|.+.+||+-.++.+..+.
T Consensus       351 ~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  351 DLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             cccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence              00122222333456666777799999999999999999998877776663

>KOG0288|consensus

Probab=99.96  E-value=1e-27  Score=207.93  Aligned_cols=279  Identities=23%  Similarity=0.333  Sum_probs=225.5

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc--CCE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      +..+--|.+.+ ..+.|-    ++...||+++.++.+.        +|++...+  .+.+|.|..+.+ +.++|.  +++
T Consensus       168 ~~~ld~h~gev-~~v~~l----~~sdtlatgg~Dr~Ik--------~W~v~~~k~~~~~tLaGs~g~i-t~~d~d~~~~~  233 (459)
T KOG0288|consen  168 LFVLDAHEGEV-HDVEFL----RNSDTLATGGSDRIIK--------LWNVLGEKSELISTLAGSLGNI-TSIDFDSDNKH  233 (459)
T ss_pred             hhhhhcccccc-ceeEEc----cCcchhhhcchhhhhh--------hhhcccchhhhhhhhhccCCCc-ceeeecCCCce
Confidence            45777899999 899999    8889999999877665        59998777  778899998888 999999  888


Q ss_pred             EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCC
Q psy18018         94 IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      +++++.|+.+++|++.                     ..+...+|.||++.|+++.|  ....+++++.|.+|++||+..
T Consensus       234 ~iAas~d~~~r~Wnvd---------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  234 VIAASNDKNLRLWNVD---------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             EEeecCCCceeeeecc---------------------chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence            8888888888888765                     45678899999999999999  444599999999999999999


Q ss_pred             ccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEec
Q psy18018        172 EECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWS  249 (635)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~  249 (635)
                      ..+...........-..+.  ...+++|-.|+.|++||.++..+......+. .|+++..  ++..+++.+.|.++.+.|
T Consensus       293 ~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD  369 (459)
T KOG0288|consen  293 AYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID  369 (459)
T ss_pred             hheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee
Confidence            8888776554433222222  5668889999999999999999999988776 8888876  588999999999999999


Q ss_pred             ccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhh
Q psy18018        250 NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC  329 (635)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (635)
                      +.+......                                        |                              
T Consensus       370 lRt~eI~~~----------------------------------------~------------------------------  379 (459)
T KOG0288|consen  370 LRTKEIRQT----------------------------------------F------------------------------  379 (459)
T ss_pred             cccccEEEE----------------------------------------e------------------------------
Confidence            887533110                                        0                              


Q ss_pred             hhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc--eeEEEEe--CCEEEEEeCCCcE
Q psy18018        330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL--TSGMELR--NNILVSGNADSTV  405 (635)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~--v~~l~~~--~~~l~s~~~dg~i  405 (635)
                          ........+...-+.|||++.++++|+.||.|++|+..++++...+......  |++++|+  +..|++++.++.+
T Consensus       380 ----sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  380 ----SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             ----eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence                0001122233455679999999999999999999999999998888766554  9999997  7788888888888


Q ss_pred             EEE
Q psy18018        406 KVW  408 (635)
Q Consensus       406 ~iw  408 (635)
                      .+|
T Consensus       456 ~lW  458 (459)
T KOG0288|consen  456 TLW  458 (459)
T ss_pred             Eec
Confidence            887

>KOG1446|consensus

Probab=99.96  E-value=2.8e-25  Score=186.85  Aligned_cols=292  Identities=21%  Similarity=0.287  Sum_probs=222.8

Q ss_pred             CeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        213 GKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       213 ~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                      .++.+.+..-.+.|.++.|  +|..+++++.|.++++||...+.....                                
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t--------------------------------   51 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT--------------------------------   51 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE--------------------------------
Confidence            3444556667789999999  489999999999999999876543110                                


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC--CCeEEEE
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL--DTSIRVW  368 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~v~  368 (635)
                                                                    ...+.......+|....+.++.++.  |..|+..
T Consensus        52 ----------------------------------------------i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen   52 ----------------------------------------------INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             ----------------------------------------------eecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence                                                          0111123444556666666666665  7899999


Q ss_pred             EccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce
Q psy18018        369 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL  448 (635)
Q Consensus       369 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  448 (635)
                      ++.+.+.++.+.+|...|..++.+                               |-+..+++++.|++|++||++..++
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~s-------------------------------P~~d~FlS~S~D~tvrLWDlR~~~c  134 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVS-------------------------------PKDDTFLSSSLDKTVRLWDLRVKKC  134 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEec-------------------------------CCCCeEEecccCCeEEeeEecCCCC
Confidence            999999999999999999999986                               3334556666666667777776666


Q ss_pred             eeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCC--ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEE
Q psy18018        449 RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLW  524 (635)
Q Consensus       449 ~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vw  524 (635)
                      ...+.....++.++.+.|-++|++...+.|++||++..  .+-..+..........+.+.|  ||++++.+...+.+++.
T Consensus       135 qg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  135 QGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL  214 (311)
T ss_pred             ceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence            66666667788888888889999988889999999853  444555543335667788888  79999999999999999


Q ss_pred             ECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018        525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       525 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                      |.-+|.....+.......       . --...+|+||++++++|+.||+|.+|++++|+.+..+.    +.+.+++.++.
T Consensus       215 DAf~G~~~~tfs~~~~~~-------~-~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~----~~~~~~~~~~~  282 (311)
T KOG1446|consen  215 DAFDGTVKSTFSGYPNAG-------N-LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR----GPNGGPVSCVR  282 (311)
T ss_pred             EccCCcEeeeEeeccCCC-------C-cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec----CCCCCCccccc
Confidence            999999777665432111       1 11467899999999999999999999999999999885    23788999999


Q ss_pred             eCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        605 ASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       605 ~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      |.|.-.++++++..=.    +|.-+
T Consensus       283 fnP~~~mf~sa~s~l~----fw~p~  303 (311)
T KOG1446|consen  283 FNPRYAMFVSASSNLV----FWLPD  303 (311)
T ss_pred             cCCceeeeeecCceEE----EEecc
Confidence            9999999998888543    66654

>KOG0301|consensus

Probab=99.96  E-value=1.1e-26  Score=214.89  Aligned_cols=279  Identities=27%  Similarity=0.493  Sum_probs=217.2

Q ss_pred             eEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018        214 KCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL  292 (635)
Q Consensus       214 ~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (635)
                      +..+.+.+|...|..+++. +..++++|.||++++|+-..+...-..                                 
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~---------------------------------   51 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETH---------------------------------   51 (745)
T ss_pred             eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccce---------------------------------
Confidence            4567889999999998884 667999999999999996554321100                                 


Q ss_pred             eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE-ecCcEEEEecCCCeEEEEEcc
Q psy18018        293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ-FDGVHVVSGSLDTSIRVWEAE  371 (635)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~dg~i~v~~~~  371 (635)
                                                                ....+.+.....+++. .++.++++|+.|+.|.+|...
T Consensus        52 ------------------------------------------~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   52 ------------------------------------------AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS   89 (745)
T ss_pred             ------------------------------------------ecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence                                                      0001111111213344 366679999999999999999


Q ss_pred             CCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018        372 SGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH  450 (635)
Q Consensus       372 ~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  450 (635)
                      +..++..+++|.+.|.+++.. ...+++|+.|.++++                                 |-.  +++..
T Consensus        90 ~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~Takv---------------------------------W~~--~~l~~  134 (745)
T KOG0301|consen   90 QAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKV---------------------------------WRI--GELVY  134 (745)
T ss_pred             CCCchhhhhccccceeeeecCCcCceEecccccceEE---------------------------------ecc--hhhhc
Confidence            999999999999999999865 333455555555554                                 433  45666


Q ss_pred             eeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018        451 TLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       451 ~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      .+.+|+..|.++.. ..+.+++|+.|.+|++|.-  ++.++.+.+   |...|..+++ ++..+++++.||.|++|++ +
T Consensus       135 ~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~g---HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~  208 (745)
T KOG0301|consen  135 SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSG---HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-D  208 (745)
T ss_pred             ccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhcc---chhheeeeEEecCCCeEeecCCceEEEEec-c
Confidence            69999999998876 5569999999999999985  778889988   9999999999 7778999999999999999 6


Q ss_pred             CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      ++.+.+..+           |..-|.++...+++..++++++|++++||+..  ++.+.+.     .....||++.+-++
T Consensus       209 ge~l~~~~g-----------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-----lPttsiWsa~~L~N  270 (745)
T KOG0301|consen  209 GEVLLEMHG-----------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-----LPTTSIWSAKVLLN  270 (745)
T ss_pred             Cceeeeeec-----------cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-----cCccceEEEEEeeC
Confidence            777776655           67888999988899999999999999999876  7777773     34558999999988


Q ss_pred             CeEEEEccCCCeeEeEEEEEe
Q psy18018        609 KLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      |.. ++|+.||.  +++|..+
T Consensus       271 gDI-vvg~SDG~--VrVfT~~  288 (745)
T KOG0301|consen  271 GDI-VVGGSDGR--VRVFTVD  288 (745)
T ss_pred             CCE-EEeccCce--EEEEEec
Confidence            876 67899998  6666654

>KOG1036|consensus

Probab=99.95  E-value=3.6e-26  Score=191.05  Aligned_cols=267  Identities=18%  Similarity=0.231  Sum_probs=206.7

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeE-
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLM-  418 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-  418 (635)
                      ...+..+.|+|.+..|++++.||.+++|+........ ...|..++.+.+|. ...+++|+.||.|+.+|++++..... 
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig   91 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG   91 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-heecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence            4455667899999999999999999999998764443 34588899999997 67899999999999999988754332 


Q ss_pred             -------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        419 -------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       419 -------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                             .....+....+++|++|++|++||.+.......+.. ...|.+++..++.|++|+.|..+.+||+++.....+
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q  170 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ  170 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCCEEEEeecCceEEEEEcccccchhh
Confidence                   223456677899999999999999997555555543 348999999999999999999999999997654442


Q ss_pred             ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc----eeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE----FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      .. .....-.+.|++.  ++.-+++++-||.|.+=.+...+    ..-.++.|.....-..+  --+|++++|+|-...|
T Consensus       171 ~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~--~yPVNai~Fhp~~~tf  247 (323)
T KOG1036|consen  171 RR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI--IYPVNAIAFHPIHGTF  247 (323)
T ss_pred             hc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE--EEEeceeEeccccceE
Confidence            22 1224556777777  66788999999999986666542    12222222222111111  1279999999999999


Q ss_pred             EEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        566 ITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                      |||+.||.|.+||+.+.+.+.++     ......|.+++|+.||..||+++.
T Consensus       248 aTgGsDG~V~~Wd~~~rKrl~q~-----~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  248 ATGGSDGIVNIWDLFNRKRLKQL-----AKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EecCCCceEEEccCcchhhhhhc-----cCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999999988     455678999999999999999875

>KOG0294|consensus

Probab=99.95  E-value=7.3e-26  Score=189.58  Aligned_cols=253  Identities=19%  Similarity=0.310  Sum_probs=202.4

Q ss_pred             EEEEEeCCCcEEEEECCC------------CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecccccc
Q psy18018        195 RIVSGSDDNTLKVWSATT------------GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLID  262 (635)
Q Consensus       195 ~l~~~~~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~  262 (635)
                      .+++|+....|.-+++.-            -.++..+..|.++|++++.++.++++|+.|.+|++||+..+.....    
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~----   78 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGI----   78 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcc----
Confidence            467788777777776532            1235667899999999999999999999999999999887532110    


Q ss_pred             ccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccC
Q psy18018        263 SCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH  342 (635)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (635)
                                                                                                ...+..
T Consensus        79 --------------------------------------------------------------------------ll~Hag   84 (362)
T KOG0294|consen   79 --------------------------------------------------------------------------LLSHAG   84 (362)
T ss_pred             --------------------------------------------------------------------------eecccc
Confidence                                                                                      011122


Q ss_pred             CCceEEEEecCc--EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        343 VPDLFGFQFDGV--HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       343 ~~~~~~~s~~~~--~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ...++.|.++-.  .|++|+.||.|.+|+...-.++..+++|.+.|+.++..  +.+.++.+.|+.+++||+-.++....
T Consensus        85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v  164 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV  164 (362)
T ss_pred             ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence            333444555433  79999999999999999999999999999999999997  66888999999999999988875544


Q ss_pred             EE--------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        419 FR--------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       419 ~~--------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                      ..        .++|.|.+++.+..++ |-+|.+.+.++...+... ..+.++.| ++..|++|++|+.|.+||..+..+.
T Consensus       165 ~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  165 LNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             eccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence            43        4789999998888766 889999887776665543 44555555 7889999999999999999998888


Q ss_pred             EEecCCCcccccEEEEEe----cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        490 QTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      ..+..   |..+|..+.+    .+.+|+++|.||.|++||++...
T Consensus       243 ~~~~A---H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  243 TEFLA---HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             eeeec---chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            88887   9999999996    36899999999999999998764

>KOG0300|consensus

Probab=99.95  E-value=5.6e-26  Score=190.30  Aligned_cols=304  Identities=24%  Similarity=0.373  Sum_probs=215.6

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeee
Q psy18018        195 RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHM  272 (635)
Q Consensus       195 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  272 (635)
                      .+.+++.|.+.++|.+++++++.++.||.+.|.++.|.  +.++++++.|++-.+|...-+...........    ... 
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~----hSs-  236 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD----HSS-  236 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCC----CCc-
Confidence            34556677778888888999999999999999999994  78999999999999997443211000000000    000 


Q ss_pred             eeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec
Q psy18018        273 MQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD  352 (635)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  352 (635)
                                                                            ++          ..       ..+..
T Consensus       237 ------------------------------------------------------Ee----------E~-------e~sDe  245 (481)
T KOG0300|consen  237 ------------------------------------------------------EE----------EE-------EHSDE  245 (481)
T ss_pred             ------------------------------------------------------hh----------hh-------hcccc
Confidence                                                                  00          00       00000


Q ss_pred             CcEEEEec--CC-CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        353 GVHVVSGS--LD-TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       353 ~~~l~~~~--~d-g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      ......++  .| .+|+       .++..+.+|...|.+..|-                               ..|+.+
T Consensus       246 ~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL-------------------------------~gg~Q~  287 (481)
T KOG0300|consen  246 HNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWL-------------------------------AGGQQM  287 (481)
T ss_pred             cccccccccccCCceee-------eeeeeeeccccceEehhhh-------------------------------cCccee
Confidence            00000000  11 1222       2456677888777666553                               345567


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC-ceeEEecCCCcccccEEEEE
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~  506 (635)
                      +++++|++..+||+++++++..+.||....+-.+-+  .+++++.+.|-+.++||++.. ..+..|++   |...|++..
T Consensus       288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG---HtdtVTS~v  364 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG---HTDTVTSVV  364 (481)
T ss_pred             eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc---cccceeEEE
Confidence            888888999999999999999999999988877764  458999999999999999843 33445555   999999999


Q ss_pred             ec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        507 FN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       507 ~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                      |+ +..+++|++|.+|++||+++..           .|+..+....+++.++.+..++.+|.-.++..|++||+. |..+
T Consensus       365 F~~dd~vVSgSDDrTvKvWdLrNMR-----------splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~Rl  432 (481)
T KOG0300|consen  365 FNTDDRVVSGSDDRTVKVWDLRNMR-----------SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRL  432 (481)
T ss_pred             EecCCceeecCCCceEEEeeecccc-----------CcceeeecCCccceeEeecCCceEEeccCCceEEEEecC-CCcc
Confidence            95 8889999999999999998754           122233347789999999999999999999999999997 5555


Q ss_pred             EeeeeccCCCCCceEEEEEeCCCCe--EEEEccCCCeeEeEEEEEeee
Q psy18018        586 RNLVSLDSGGSGGVVWRIRASETKL--VCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       586 ~~~~~~~~~~~~~~i~~l~~s~d~~--~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ..+......+|...|.+.+|..+..  -|.+++.|..    +..|...
T Consensus       433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~----v~gW~in  476 (481)
T KOG0300|consen  433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRM----VAGWKIN  476 (481)
T ss_pred             ccCCcccccccceeeeeeeccccCcccccccccccce----eeeeEec
Confidence            6665444568999999999987754  5778888876    5555443

>KOG0283|consensus

Probab=99.95  E-value=1.2e-26  Score=220.41  Aligned_cols=282  Identities=18%  Similarity=0.317  Sum_probs=198.7

Q ss_pred             EEEee-CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccc--------------eeEEeeecc--CCCE
Q psy18018        135 LHVLV-GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQET--------------EVELSHGYA--LRSR  195 (635)
Q Consensus       135 ~~~l~-~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~--~~~~  195 (635)
                      .+.+. +|.+.|.++.|  ||++||+||.||.|+||.+...+.........              +........  ....
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34556 89999999999  99999999999999999987643321111100              000000000  0001


Q ss_pred             EEEEeCCCcEEEEECC----CCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCcccee
Q psy18018        196 IVSGSDDNTLKVWSAT----TGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR  270 (635)
Q Consensus       196 l~~~~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  270 (635)
                      .-.+..... .+.+..    ..+++..+.||.+.|..+.|+ .++|++++.|.++|+|++..+..               
T Consensus       339 ~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C---------------  402 (712)
T KOG0283|consen  339 SRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC---------------  402 (712)
T ss_pred             cccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcce---------------
Confidence            111122222 122211    256778899999999999996 88999999999999999875432               


Q ss_pred             eeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE
Q psy18018        271 HMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ  350 (635)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  350 (635)
                                                                                      +....+....++++|+
T Consensus       403 ----------------------------------------------------------------L~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  403 ----------------------------------------------------------------LKVFSHNDFVTCVAFN  418 (712)
T ss_pred             ----------------------------------------------------------------eeEEecCCeeEEEEec
Confidence                                                                            1123455667889999


Q ss_pred             e-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        351 F-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       351 ~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      | |.+++++|+-||.++||++...+.+.-...+ ..|+++++.                               |||++.
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~-------------------------------PdGk~a  466 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS-------------------------------PDGKGA  466 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEec-------------------------------cCCceE
Confidence            9 8999999999999999999866655433333 566777664                               778888


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecc--C------CccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMG--H------QSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~--~------~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                      ++|+.+|.+++|+....++.....-  |      ...|+++.+.   ++.+++.+.|..|+|+|.++..++..+++....
T Consensus       467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~  546 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT  546 (712)
T ss_pred             EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence            8888888888888877666544321  1      2279999884   457888899999999999988999999885544


Q ss_pred             cccEE-EEEecCCEEEEEeCCCcEEEEECCC
Q psy18018        499 QSAVT-CLQFNSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       499 ~~~v~-~~~~~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      ...+. ++..||++++++++|..|++|+...
T Consensus       547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  547 SSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            44443 3333899999999999999999854

>KOG0283|consensus

Probab=99.95  E-value=2.7e-26  Score=218.17  Aligned_cols=199  Identities=19%  Similarity=0.305  Sum_probs=166.1

Q ss_pred             cccc-ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCC----------------------------
Q psy18018         19 KVLK-GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP----------------------------   69 (635)
Q Consensus        19 ~~l~-gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~----------------------------   69 (635)
                      +.++ .|.+.| -|+.||    +||+|||+|+.|+++.        ||.+..                            
T Consensus       260 Qe~~~ah~gaI-w~mKFS----~DGKyLAsaGeD~vir--------VWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~  326 (712)
T KOG0283|consen  260 QEISNAHKGAI-WAMKFS----HDGKYLASAGEDGVIR--------VWKVIESERMRVAEGDSSCMYFEYNANSQIEPST  326 (712)
T ss_pred             eccccccCCcE-EEEEeC----CCCceeeecCCCceEE--------EEEEeccchhcccccccchhhhhhhhccccCccc
Confidence            5666 999999 699999    9999999999765554        687655                            


Q ss_pred             --------------------------------CCCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEE
Q psy18018         70 --------------------------------IKDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLV  116 (635)
Q Consensus        70 --------------------------------~~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~  116 (635)
                                                      .++++.+.||.+.| ..++|| .++|.|++-|.+||||++..      
T Consensus       327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DI-LDlSWSKn~fLLSSSMDKTVRLWh~~~------  399 (712)
T KOG0283|consen  327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADI-LDLSWSKNNFLLSSSMDKTVRLWHPGR------  399 (712)
T ss_pred             cccccccccccccccccCCccccCCCccccccccchhhhhccchhh-eecccccCCeeEeccccccEEeecCCC------
Confidence                                            12255678999998 899999 89999999999999998864      


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC
Q psy18018        117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR  193 (635)
Q Consensus       117 ~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (635)
                                     .++++.| .|..-|+|++|   |.+++++|+.||.||||++...+.+.-...+.-+...+..|++
T Consensus       400 ---------------~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG  463 (712)
T KOG0283|consen  400 ---------------KECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG  463 (712)
T ss_pred             ---------------cceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC
Confidence                           4566667 79999999999   9999999999999999999999888777777777777888889


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEeC--C------CCCeEEEEee---CCEEEEeeCceeEEEecccce
Q psy18018        194 SRIVSGSDDNTLKVWSATTGKCLRTLIG--H------TGGVWSSQMA---GNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       194 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h------~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~  253 (635)
                      ...++|+.+|.+++|++...+......-  |      ...|+.+.|.   .+.++..+.|..|||+|..+.
T Consensus       464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence            9999999999999999988777655421  1      2279999983   557999999999999998654

>KOG0299|consensus

Probab=99.95  E-value=1.3e-25  Score=197.85  Aligned_cols=288  Identities=20%  Similarity=0.312  Sum_probs=213.4

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCC-----------------cee-ecc
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDP-----------------KVL-KGH   79 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~-----------------~~l-~~h   79 (635)
                      .+.+..|.-++ +||+++    ||.++.-+++.+..+.        =|++.+++..                 +.- ++|
T Consensus       135 ~~~~~~H~~s~-~~vals----~d~~~~fsask~g~i~--------kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h  201 (479)
T KOG0299|consen  135 FRVIGKHQLSV-TSVALS----PDDKRVFSASKDGTIL--------KWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGH  201 (479)
T ss_pred             ceeeccccCcc-eEEEee----ccccceeecCCCccee--------eeehhcCcccccccccchhhhhccCCCCcccccc
Confidence            47788999999 899999    9999999998765333        3777766532                 111 377


Q ss_pred             CcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEE
Q psy18018         80 DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLV  155 (635)
Q Consensus        80 ~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l  155 (635)
                      ...+ .+++.|  |+|||+|+.|..|.||+..                     +.+.++.+++|.+.|.+++|  ....|
T Consensus       202 ~kei-l~~avS~Dgkylatgg~d~~v~Iw~~~---------------------t~ehv~~~~ghr~~V~~L~fr~gt~~l  259 (479)
T KOG0299|consen  202 VKEI-LTLAVSSDGKYLATGGRDRHVQIWDCD---------------------TLEHVKVFKGHRGAVSSLAFRKGTSEL  259 (479)
T ss_pred             ccee-EEEEEcCCCcEEEecCCCceEEEecCc---------------------ccchhhcccccccceeeeeeecCccce
Confidence            7777 789998  9999999999988888776                     45667789999999999999  56789


Q ss_pred             EEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEe-CCCcEEEEECCCCeEEEEEeCCCCCeEEEEe-eC
Q psy18018        156 VSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGS-DDNTLKVWSATTGKCLRTLIGHTGGVWSSQM-AG  233 (635)
Q Consensus       156 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~  233 (635)
                      ++++.|++|++|+++....+..+.+|...+.........++++.+ .|+++++|++... ....+.+|.+.+-+++| +.
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~  338 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIND  338 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecc
Confidence            999999999999999999999999998888877776666666655 9999999999543 33456789999999999 78


Q ss_pred             CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccc
Q psy18018        234 NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR  313 (635)
Q Consensus       234 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (635)
                      ..+++|+.||.|.+|++.................                                              
T Consensus       339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~----------------------------------------------  372 (479)
T KOG0299|consen  339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP----------------------------------------------  372 (479)
T ss_pred             cceeeccCCceEEEeeecccCceeEeeccccccC----------------------------------------------
Confidence            9999999999999999877654321111000000                                              


Q ss_pred             ceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC----ceEEeeeCCCcceeEE
Q psy18018        314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG----NLRHTLMGHQSLTSGM  389 (635)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~~~~~~~~~~~v~~l  389 (635)
                                          .........-...++..|...++++|+.+|.|++|.+..+    +++..+. -.+-|+++
T Consensus       373 --------------------~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl  431 (479)
T KOG0299|consen  373 --------------------ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSL  431 (479)
T ss_pred             --------------------CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEE
Confidence                                0000000123445677889999999999999999999877    3344444 56788899


Q ss_pred             EEe--CCEEE-EEeCCCcEEEE
Q psy18018        390 ELR--NNILV-SGNADSTVKVW  408 (635)
Q Consensus       390 ~~~--~~~l~-s~~~dg~i~iw  408 (635)
                      +|.  +..++ ..+....+--|
T Consensus       432 ~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  432 AFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEccCCCEEEEeccccccccee
Confidence            875  44333 33444444444

>KOG0289|consensus

Probab=99.95  E-value=2e-25  Score=194.94  Aligned_cols=267  Identities=24%  Similarity=0.347  Sum_probs=209.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeee
Q psy18018        193 RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHM  272 (635)
Q Consensus       193 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  272 (635)
                      .+.+++|+.|..+.++|...++.+..++||...|..+.+                                         
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~-----------------------------------------  269 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKF-----------------------------------------  269 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEe-----------------------------------------
Confidence            578899999999999999999999999999988888774                                         


Q ss_pred             eeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec
Q psy18018        273 MQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD  352 (635)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  352 (635)
                                                                                                   +++
T Consensus       270 -----------------------------------------------------------------------------~~~  272 (506)
T KOG0289|consen  270 -----------------------------------------------------------------------------HKD  272 (506)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         444


Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEE
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSG  432 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~  432 (635)
                      ...+++++.|..|++|.............|..+|+.+..+                               |.|.||+++
T Consensus       273 ~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h-------------------------------~tgeYllsA  321 (506)
T KOG0289|consen  273 LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLH-------------------------------PTGEYLLSA  321 (506)
T ss_pred             hhheeecCCcceEEeeccccccCccccccccccceeeeec-------------------------------cCCcEEEEe
Confidence            4556666667777777766666666778899999888765                               455666666


Q ss_pred             eCCCcEEEEeCCCCceeeeeccC--CccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-
Q psy18018        433 SLDTSIRVWEAESGNLRHTLMGH--QSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-  507 (635)
Q Consensus       433 ~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-  507 (635)
                      +.|++..+.|++++..+......  .-.+++..+  +|.++.+|..|+.++|||++++..+..|.+   |.++|..++| 
T Consensus       322 s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg---ht~~vk~i~Fs  398 (506)
T KOG0289|consen  322 SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG---HTGPVKAISFS  398 (506)
T ss_pred             cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC---CCCceeEEEec
Confidence            66666677777777665554432  224566666  566999999999999999999999999988   9999999999 


Q ss_pred             -cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC--Cce
Q psy18018        508 -NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT--GEF  584 (635)
Q Consensus       508 -~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~--~~~  584 (635)
                       ||.+|+++++|+.|++||++..+....+...          ...++.++.|.+.|.+|+.++.|=.|++++-.+  ..+
T Consensus       399 ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~----------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~  468 (506)
T KOG0289|consen  399 ENGYWLATAADDGSVKLWDLRKLKNFKTIQLD----------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE  468 (506)
T ss_pred             cCceEEEEEecCCeEEEEEehhhcccceeecc----------ccccceeEEEcCCCCeEEeecceeEEEEEeccccccee
Confidence             7999999999999999999988766655432          234799999999999999998886666666444  344


Q ss_pred             EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      +..+     ..|.+..+.+.|....++|++++.|..  .+++.+
T Consensus       469 ~~~~-----~~~sg~st~v~Fg~~aq~l~s~smd~~--l~~~a~  505 (506)
T KOG0289|consen  469 IKEL-----ADHSGLSTGVRFGEHAQYLASTSMDAI--LRLYAL  505 (506)
T ss_pred             eehh-----hhcccccceeeecccceEEeeccchhh--eEEeec
Confidence            5555     467788999999999999999999997  555543

>KOG0641|consensus

Probab=99.95  E-value=8.9e-25  Score=174.10  Aligned_cols=304  Identities=19%  Similarity=0.282  Sum_probs=227.7

Q ss_pred             eeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchh----hhhhhh-hhh--ccccccCCCceEEEEecCcEEE
Q psy18018        285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR----EKCLEA-ATL--HRNKKTHVPDLFGFQFDGVHVV  357 (635)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~--~~~~~~~~~~~~~~s~~~~~l~  357 (635)
                      +..+.....+..+.|.|.+.+.+.+++.+.+++-......-.    +..... ...  ....+...+.+.+|+|+|+.++
T Consensus        26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence            445566677888999999999999988877766443322111    111111 111  1223334566789999999999


Q ss_pred             EecCCCeEEEEEccCCce-----EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEE
Q psy18018        358 SGSLDTSIRVWEAESGNL-----RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSG  432 (635)
Q Consensus       358 ~~~~dg~i~v~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~  432 (635)
                      +|++|..|++...+...+     -.++..|.+.|..++|-.+                           ....+..|+++
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~---------------------------~~s~~~il~s~  158 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD---------------------------PESGGAILASA  158 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC---------------------------CCcCceEEEec
Confidence            999999999977654332     2457778888888888411                           00112233333


Q ss_pred             -eCCCcEEEEeCCCCceeeeeccCCccEEEEE-ecCCEEEEEeCCCcEEEEECCCCceeEEecCCC----cccccEEEEE
Q psy18018        433 -SLDTSIRVWEAESGNLRHTLMGHQSLTSGME-LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRN----KHQSAVTCLQ  506 (635)
Q Consensus       433 -~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~  506 (635)
                       ..|..|++-|...|+..+.+.+|.+.|.++- |++-++++|+.|.+|++||++-..++..+....    -..+.|.+++
T Consensus       159 gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             CCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence             2466778888888999999999999998874 789999999999999999999888888775421    1235677777


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      .  .|++|++|-.|....+||++.+..++.+..           |+..|.|+.|||...||++++.|..|++-|++. .+
T Consensus       239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-----------hsadir~vrfsp~a~yllt~syd~~ikltdlqg-dl  306 (350)
T KOG0641|consen  239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-----------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DL  306 (350)
T ss_pred             ECCCcceeeeccCCCceEEEEeeCCceeeeeCC-----------CccceeEEEeCCCceEEEEecccceEEEeeccc-ch
Confidence            7  499999999999999999999998887765           789999999999999999999999999999973 33


Q ss_pred             EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      -.++.......|...+..+.|.|..--+++.+.|.+  +.||.++
T Consensus       307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWALN  349 (350)
T ss_pred             hhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEeccC
Confidence            333322222578888889999999999999999998  7788775

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.1e-24  Score=208.51  Aligned_cols=293  Identities=15%  Similarity=0.122  Sum_probs=201.0

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeec--cceeeeeeecCCCCCCc---eeeccCcceEEEEEEc---CCEE
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMS--HRSVEINWRTRPIKDPK---VLKGHDDHVITCLQFS---GSRI   94 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~--~~~~~~iwd~~~~~~~~---~l~~h~~~vi~~~~~s---~~~l   94 (635)
                      .|...| +..+++    +|+..++++....++..-  .+...++|..+.++...   .+.||.+.| .+++|+   +++|
T Consensus        18 ~~~~~i-~~~~~~----~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V-~~v~fsP~d~~~L   91 (493)
T PTZ00421         18 RHFLNV-TPSTAL----WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPI-IDVAFNPFDPQKL   91 (493)
T ss_pred             cceecc-cccccc----CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCE-EEEEEcCCCCCEE
Confidence            355666 777788    775555554444333211  12334556666665443   588999998 999998   6799


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCC
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~  171 (635)
                      |+|+.|++|++||+.++...              -...+++..+.+|...|.+++|  + ++.|++++.|++|++||+.+
T Consensus        92 aSgS~DgtIkIWdi~~~~~~--------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t  157 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLT--------------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER  157 (493)
T ss_pred             EEEeCCCEEEEEecCCCccc--------------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999999999764210              0123567788999999999999  3 46999999999999999999


Q ss_pred             ccceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe-EEEEe--eCCEEEEee----Cce
Q psy18018        172 EECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV-WSSQM--AGNIIISGS----TDR  243 (635)
Q Consensus       172 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~--~~~~l~s~~----~dg  243 (635)
                      ++.+..+..+...+.. .+.+++..|++++.|+.|++||+++++.+..+.+|.+.. ..+.|  +++.+++++    .|+
T Consensus       158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr  237 (493)
T PTZ00421        158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR  237 (493)
T ss_pred             CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence            9888777666554444 444567889999999999999999999999999998754 34445  355666654    489


Q ss_pred             eEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCc
Q psy18018        244 TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL  323 (635)
Q Consensus       244 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (635)
                      .|++||++........                                                                
T Consensus       238 ~VklWDlr~~~~p~~~----------------------------------------------------------------  253 (493)
T PTZ00421        238 QIMLWDTRKMASPYST----------------------------------------------------------------  253 (493)
T ss_pred             eEEEEeCCCCCCceeE----------------------------------------------------------------
Confidence            9999998642110000                                                                


Q ss_pred             chhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-CCCeEEEEEccCCceEEeeeC-CCcceeEEEEeCCEEEEEeC
Q psy18018        324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNA  401 (635)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~~~  401 (635)
                                  .............++++++++++++ .|+.|++||+.+++....... +..++.++++.+...+-...
T Consensus       254 ------------~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~  321 (493)
T PTZ00421        254 ------------VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRK  321 (493)
T ss_pred             ------------eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccc
Confidence                        0000001112234788999998887 599999999999887765543 34467777776544333333


Q ss_pred             CCcEEEEEcc
Q psy18018        402 DSTVKVWDIV  411 (635)
Q Consensus       402 dg~i~iwd~~  411 (635)
                      -...++|.+.
T Consensus       322 ~Ei~r~~~l~  331 (493)
T PTZ00421        322 CEIARFYALT  331 (493)
T ss_pred             eeeeEEEEec
Confidence            3334555553

>KOG0772|consensus

Probab=99.95  E-value=2.3e-25  Score=198.94  Aligned_cols=292  Identities=17%  Similarity=0.243  Sum_probs=210.2

Q ss_pred             EEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccccee
Q psy18018        216 LRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELA  293 (635)
Q Consensus       216 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (635)
                      .-.+++|+..|.+++++  |..|++|+.|-+|++||+..-....                                    
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------------------  203 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------------------------  203 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------------------------
Confidence            34578899999999995  8899999999999999986532111                                    


Q ss_pred             eEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC
Q psy18018        294 LYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG  373 (635)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  373 (635)
                                                           ...........|....+.+++.|..|++.+.....+++|-...
T Consensus       204 -------------------------------------~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~  246 (641)
T KOG0772|consen  204 -------------------------------------RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF  246 (641)
T ss_pred             -------------------------------------hhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence                                                 0011113445688888999999999999999999999996644


Q ss_pred             ceEEe------------eeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcE
Q psy18018        374 NLRHT------------LMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSI  438 (635)
Q Consensus       374 ~~~~~------------~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  438 (635)
                      +....            -++|...+++-+|+   .+.+++++.||++++||++..+.-                     .
T Consensus       247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---------------------~  305 (641)
T KOG0772|consen  247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---------------------L  305 (641)
T ss_pred             eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---------------------e
Confidence            33322            25677788888886   346777777777777776643211                     1


Q ss_pred             EEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccc--cEEEEEe--cCCEE
Q psy18018        439 RVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS--AVTCLQF--NSRFV  512 (635)
Q Consensus       439 ~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~l  512 (635)
                      .|+....      ..+..-+++...|  +++++|+|+.||.|.+|+.........+....+|..  .|+|++|  +|++|
T Consensus       306 qVik~k~------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L  379 (641)
T KOG0772|consen  306 QVIKTKP------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL  379 (641)
T ss_pred             eEEeecc------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence            1111110      0122334555565  678999999999999999865433333333344665  8999999  79999


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC------CCeEEEEeCCCCceEE
Q psy18018        513 ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD------DGTVKLWDVKTGEFIR  586 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~v~iwd~~~~~~~~  586 (635)
                      ++-+.|+++++||++..+........        +...-+-+.++||||.++|++|..      .|++.+||..+.+.+.
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tg--------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~  451 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTG--------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY  451 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcC--------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence            99999999999999976532221111        112335677899999999999853      4789999999999998


Q ss_pred             eeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        587 NLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       587 ~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      .+     .-....|..+.|+|.-..+.+++.||+
T Consensus       452 ki-----~i~~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  452 KI-----DISTASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             Ee-----cCCCceEEEEeecchhhheeeecCCCc
Confidence            88     345788999999999999999999998

>KOG0973|consensus

Probab=99.95  E-value=2.1e-25  Score=217.83  Aligned_cols=305  Identities=24%  Similarity=0.356  Sum_probs=240.1

Q ss_pred             eeeccCcceEEEEEEc--CCEEEEee--CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         75 VLKGHDDHVITCLQFS--GSRIVSGS--DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        75 ~l~~h~~~vi~~~~~s--~~~l~s~~--~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      .+-+|.+..|.+++.+  |..+||||  .|+.+++|+.+.=         ......+|..-.+.+..+..|.+.|+|+.|
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~v---------l~~~~~~~~~l~k~l~~m~~h~~sv~CVR~   77 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPV---------LDEKEEKNENLPKHLCTMDDHDGSVNCVRF   77 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccc---------cchhhhhhcccchhheeeccccCceeEEEE
Confidence            3457877777899998  99999999  8999999987621         112223333335677888899999999999


Q ss_pred             --cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018        151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  228 (635)
                        ||++||+|++|+.|.||.... .....                   +.++..|.   =+.+..+.+..+.+|...|..
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~-~~~~~-------------------~fgs~g~~---~~vE~wk~~~~l~~H~~DV~D  134 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAE-IGSGT-------------------VFGSTGGA---KNVESWKVVSILRGHDSDVLD  134 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecc-cCCcc-------------------cccccccc---cccceeeEEEEEecCCCccce
Confidence              999999999999999998764 11100                   11111111   134556778889999988887


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      ++                                                                              
T Consensus       135 v~------------------------------------------------------------------------------  136 (942)
T KOG0973|consen  135 VN------------------------------------------------------------------------------  136 (942)
T ss_pred             ec------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                                                              ++|++.++++++.|+.|.+|+..+.+.+..+++|.+.|..
T Consensus       137 ----------------------------------------Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKG  176 (942)
T KOG0973|consen  137 ----------------------------------------WSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKG  176 (942)
T ss_pred             ----------------------------------------cCCCccEEEEecccceEEEEccccceeeeeeecccccccc
Confidence                                                    7788888999999999999999999999999999999999


Q ss_pred             EEEe--CCEEEEEeCCCcEEEEEccCCcc---------------eeEEEEEeeCCcEEEEEe----CCCcEEEEeCCCCc
Q psy18018        389 MELR--NNILVSGNADSTVKVWDIVSGTK---------------KLMFRICLFDGVHVVSGS----LDTSIRVWEAESGN  447 (635)
Q Consensus       389 l~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~  447 (635)
                      +.|+  +++|++-+.|++|++|++.+-..               ......++|||++|++..    .-..+.+.+..+.+
T Consensus       177 vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk  256 (942)
T KOG0973|consen  177 VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK  256 (942)
T ss_pred             eEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence            9998  88999999999999999654211               111223899999999864    33478899988888


Q ss_pred             eeeeeccCCccEEEEEecC-------C------------EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-
Q psy18018        448 LRHTLMGHQSLTSGMELRN-------N------------ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-  507 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~~~-------~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-  507 (635)
                      .-..+.||.+++.++.|++       +            .+|+|+.|++|.||.....+++..+..  -....|..++| 
T Consensus       257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWs  334 (942)
T KOG0973|consen  257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWS  334 (942)
T ss_pred             eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEc
Confidence            8899999999999999842       1            689999999999999988777766543  25678999999 


Q ss_pred             -cCCEEEEEeCCCcEEEEECCCCce
Q psy18018        508 -NSRFVITSSDDGTVKLWDVKTGEF  531 (635)
Q Consensus       508 -~~~~l~~~~~d~~i~vwd~~~~~~  531 (635)
                       ||..|+.+|.||+|.+..++..++
T Consensus       335 pdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  335 PDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCCCeEEEEecCCeEEEEEcchHHh
Confidence             699999999999999999886543

>KOG0310|consensus

Probab=99.94  E-value=2.7e-25  Score=197.44  Aligned_cols=276  Identities=21%  Similarity=0.357  Sum_probs=205.1

Q ss_pred             CCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeec-cCCCEEEEEeCCCcEEEEECCCCeEE
Q psy18018        141 HLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSATTGKCL  216 (635)
Q Consensus       141 h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~  216 (635)
                      ..++|.+++|   +..-+|+.+ .-.+.+|+..+......+..-.....+..+ .++.++++|...|.|+++|+.+...+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            3568999999   344455544 357999999988877766555555555555 56777888889999999998777778


Q ss_pred             EEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018        217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV  296 (635)
Q Consensus       217 ~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (635)
                      +.+.+|+.++..+.                                                                  
T Consensus       104 R~~~ah~apv~~~~------------------------------------------------------------------  117 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTK------------------------------------------------------------------  117 (487)
T ss_pred             HHHhhccCceeEEE------------------------------------------------------------------
Confidence            88899999887666                                                                  


Q ss_pred             EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCce
Q psy18018        297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL  375 (635)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~  375 (635)
                                                                          |+| ++..+++|+.|+.+++||+.+...
T Consensus       118 ----------------------------------------------------f~~~d~t~l~s~sDd~v~k~~d~s~a~v  145 (487)
T KOG0310|consen  118 ----------------------------------------------------FSPQDNTMLVSGSDDKVVKYWDLSTAYV  145 (487)
T ss_pred             ----------------------------------------------------ecccCCeEEEecCCCceEEEEEcCCcEE
Confidence                                                                444 445566777777788888887776


Q ss_pred             EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC-ceeeeecc
Q psy18018        376 RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMG  454 (635)
Q Consensus       376 ~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~  454 (635)
                      ...+.+|+..|.+.++.+.                              ++..+++|+.||.|++||++.. ..+.++. 
T Consensus       146 ~~~l~~htDYVR~g~~~~~------------------------------~~hivvtGsYDg~vrl~DtR~~~~~v~eln-  194 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPA------------------------------NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-  194 (487)
T ss_pred             EEEecCCcceeEeeccccC------------------------------CCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence            6688999999999998631                              2223444445555555555544 3444443 


Q ss_pred             CCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc-eeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018        455 HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQ-CLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG  529 (635)
Q Consensus       455 ~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~  529 (635)
                      |..+|..+.+  ++.++++++. ..+++||+.+|. .+..+..   |...|+|+.+  ++..|++++-|+.+++||+.+.
T Consensus       195 hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~---H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  195 HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN---HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc---ccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            7778877776  4568887765 469999999654 3444443   8899999999  5799999999999999998887


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                      +.+....            +.++|.+++++||++.++.|..||.+.+-+...+
T Consensus       271 Kvv~s~~------------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  271 KVVHSWK------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             EEEEeee------------cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            7665554            5889999999999999999999999888755443

>KOG0641|consensus

Probab=99.94  E-value=5e-24  Score=169.88  Aligned_cols=299  Identities=19%  Similarity=0.278  Sum_probs=208.5

Q ss_pred             cccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC----CC-----CceeeccCcceEEEEEEc--
Q psy18018         22 KGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI----KD-----PKVLKGHDDHVITCLQFS--   90 (635)
Q Consensus        22 ~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~----~~-----~~~l~~h~~~vi~~~~~s--   90 (635)
                      ......| ++++|.    |.|.+-|.|+..+..++-.-+.++  |.+.+    +.     .++-+.|.+.+ .|.+||  
T Consensus        29 l~dsqai-rav~fh----p~g~lyavgsnskt~ric~yp~l~--~~r~~hea~~~pp~v~~kr~khhkgsi-yc~~ws~~  100 (350)
T KOG0641|consen   29 LEDSQAI-RAVAFH----PAGGLYAVGSNSKTFRICAYPALI--DLRHAHEAAKQPPSVLCKRNKHHKGSI-YCTAWSPC  100 (350)
T ss_pred             ecchhhe-eeEEec----CCCceEEeccCCceEEEEcccccc--CcccccccccCCCeEEeeeccccCccE-EEEEecCc
Confidence            3455666 999999    999999999988876653322221  22111    11     12334677777 999999  


Q ss_pred             CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cC-----CEEEEEeCCCeE
Q psy18018         91 GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DG-----KLVVSGAYDYMV  164 (635)
Q Consensus        91 ~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~-----~~l~s~~~dg~v  164 (635)
                      |++||+|+.|.+|++--.....+-               .+ -.-.+|..|.+.|..++| ++     ..|++++     
T Consensus       101 geliatgsndk~ik~l~fn~dt~~---------------~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-----  159 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCN---------------AT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-----  159 (350)
T ss_pred             cCeEEecCCCceEEEEeccccccc---------------cc-CcceeeeecCCceeeeEEecCCCcCceEEEecC-----
Confidence            999999999999998765432110               01 123467789999999999 32     2233322     


Q ss_pred             EEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEE-EeeCCEEEEeeCce
Q psy18018        165 KIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS-QMAGNIIISGSTDR  243 (635)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~-~~~~~~l~s~~~dg  243 (635)
                                                         ..|..|++-|...|+....+.+|++-|.++ .|++-.+++|+.|.
T Consensus       160 -----------------------------------agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdk  204 (350)
T KOG0641|consen  160 -----------------------------------AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDK  204 (350)
T ss_pred             -----------------------------------CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCc
Confidence                                               345667777888899999999999999887 57999999999999


Q ss_pred             eEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCc
Q psy18018        244 TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL  323 (635)
Q Consensus       244 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (635)
                      +|++||++-+......                 .                                              
T Consensus       205 tirfwdlrv~~~v~~l-----------------~----------------------------------------------  221 (350)
T KOG0641|consen  205 TIRFWDLRVNSCVNTL-----------------D----------------------------------------------  221 (350)
T ss_pred             eEEEEeeeccceeeec-----------------c----------------------------------------------
Confidence            9999998754221000                 0                                              


Q ss_pred             chhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeC--CEEEEEeC
Q psy18018        324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNA  401 (635)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~~~  401 (635)
                              ...............+++.|.|+.|++|-.|....+||++.++.++.+..|...|.++.|++  .++++++.
T Consensus       222 --------~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy  293 (350)
T KOG0641|consen  222 --------NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY  293 (350)
T ss_pred             --------CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc
Confidence                    00000111223445678899999999999999999999999999999999999999999984  35666666


Q ss_pred             CCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCCCcEE
Q psy18018        402 DSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVK  479 (635)
Q Consensus       402 dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~  479 (635)
                      |..|++-|++..                             +...-.+.....|...+..+.|++.  -+++.+.|.++.
T Consensus       294 d~~ikltdlqgd-----------------------------la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t  344 (350)
T KOG0641|consen  294 DMKIKLTDLQGD-----------------------------LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT  344 (350)
T ss_pred             cceEEEeecccc-----------------------------hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence            666655554421                             1111223444567777777788655  678889999999


Q ss_pred             EEECC
Q psy18018        480 VWDIV  484 (635)
Q Consensus       480 iwd~~  484 (635)
                      +|-+.
T Consensus       345 lwa~~  349 (350)
T KOG0641|consen  345 LWALN  349 (350)
T ss_pred             EeccC
Confidence            99763

>KOG0308|consensus

Probab=99.94  E-value=1.1e-25  Score=206.75  Aligned_cols=332  Identities=22%  Similarity=0.339  Sum_probs=230.5

Q ss_pred             CCCceeecCCcchheeeccceeeeeeecCCCC------CCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCC
Q psy18018         40 PCESFIRSSSPWKALFMSHRSVEINWRTRPIK------DPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTG  111 (635)
Q Consensus        40 ~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~------~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~  111 (635)
                      |+++||-+|+.++        .+++|+.....      ...+++.|.++| +.++..  ++.|+++|.|-+|++|+...+
T Consensus        35 ~~~ryLfTgGRDg--------~i~~W~~~~d~~~~s~~~~asme~HsDWV-NDiiL~~~~~tlIS~SsDtTVK~W~~~~~  105 (735)
T KOG0308|consen   35 PNGRYLFTGGRDG--------IIRLWSVTQDSNEPSTPYIASMEHHSDWV-NDIILCGNGKTLISASSDTTVKVWNAHKD  105 (735)
T ss_pred             CCCceEEecCCCc--------eEEEeccccccCCcccchhhhhhhhHhHH-hhHHhhcCCCceEEecCCceEEEeecccC
Confidence            8999999998654        45569876433      367899999999 888888  889999999999999998744


Q ss_pred             cEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccc--eeec--------
Q psy18018        112 KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEEC--LHAE--------  178 (635)
Q Consensus       112 ~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~--~~~~--------  178 (635)
                      .                   .-+..++..|..-|.|+++   +...+|||+.|+.|.+||+.++..  +..+        
T Consensus       106 ~-------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl  166 (735)
T KOG0308|consen  106 N-------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL  166 (735)
T ss_pred             c-------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence            2                   1345678899999999999   788999999999999999998732  2221        


Q ss_pred             c-ccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeee
Q psy18018        179 L-QETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILA  256 (635)
Q Consensus       179 ~-~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  256 (635)
                      . ++.. +......+.+..+++|+.++.+++||.++++.+..++||+..|..+.                          
T Consensus       167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll--------------------------  220 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL--------------------------  220 (735)
T ss_pred             CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE--------------------------
Confidence            1 2222 22233333455788889999999999999999999999999888766                          


Q ss_pred             ccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhc
Q psy18018        257 IGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLH  336 (635)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (635)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (735)
T KOG0308|consen  221 --------------------------------------------------------------------------------  220 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC--EEEEEeCCCcEEEEEccCCc
Q psy18018        337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       337 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~  414 (635)
                                  ++.||+++++++.||+|++||+...+++.++..|...|.++..+++  .+.+|+.||.|..=|+.+..
T Consensus       221 ------------~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  221 ------------VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             ------------EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence                        5667888888888888888888888888899999999988888754  68888888888888887742


Q ss_pred             ceeEE-EE--------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018        415 KKLMF-RI--------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       415 ~~~~~-~~--------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  485 (635)
                      ..... .-        .....+.+-+++.|+.|+-|..+-..             .+..++++.. -+.|......+...
T Consensus       289 ~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-------------~l~~s~~~~~-~~T~~~~~~~~~~~  354 (735)
T KOG0308|consen  289 KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-------------ALSVSGDLDF-FSTDSNNHSCDLTN  354 (735)
T ss_pred             hheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc-------------ccccCCCCCc-ccccCCCccccccC
Confidence            22211 11        11123334566667777666543111             2222333222 22333333333221


Q ss_pred             CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  536 (635)
                       .+-..+.+    ..++..-+.  |.+.++|=...|.+.+||+-....+..+.
T Consensus       355 -tp~~vi~G----g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  355 -TPDSVIPG----GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             -CCceeccC----chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence             22223332    122322233  67889999999999999988766555443

>KOG0640|consensus

Probab=99.94  E-value=4.7e-25  Score=184.20  Aligned_cols=274  Identities=22%  Similarity=0.367  Sum_probs=221.8

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccC------------C------ceEEeeeCCCcceeEEEEe--CCEEEEEe
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAES------------G------NLRHTLMGHQSLTSGMELR--NNILVSGN  400 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~------------~------~~~~~~~~~~~~v~~l~~~--~~~l~s~~  400 (635)
                      ....++.+|++||.++++|+.|..|+++|.+.            +      ..++++..|..+|+++.|.  ...|++++
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s  191 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS  191 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence            34556788999999999999999999999761            1      3567888999999999998  56999999


Q ss_pred             CCCcEEEEEccCCc-----------ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee---eccCCccEEEEEec-
Q psy18018        401 ADSTVKVWDIVSGT-----------KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT---LMGHQSLTSGMELR-  465 (635)
Q Consensus       401 ~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~~-  465 (635)
                      .|++|+++|+....           .......|.|.|.+|++|..-..+++||+.+-++...   -..|...|+++.++ 
T Consensus       192 rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  192 RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence            99999999987653           2233345889999999999999999999998776443   34588999999985 


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018        466 -NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       466 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                       +++.++++.||.|++||--+++++..+.... ....|.+..|  |++|+++.+.|..+++|.+.++..+..+.+.....
T Consensus       272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg  350 (430)
T KOG0640|consen  272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG  350 (430)
T ss_pred             CccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc
Confidence             6799999999999999999999999887521 3456777777  89999999999999999999999998887643222


Q ss_pred             ceeEEeccCceecccccCCCeEEEEecC-CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee
Q psy18018        543 PFYFLIYSQPLLCPHLQFNSRFVITSSD-DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE  621 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~  621 (635)
                      .      ...-+...|.....|++.-.+ .+.+.-||..++..+..+.    .+|++.+..+.-||.+..+++|+.|-. 
T Consensus       351 r------q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----lgHn~a~R~i~HSP~~p~FmTcsdD~r-  419 (430)
T KOG0640|consen  351 R------QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----LGHNGAVRWIVHSPVEPAFMTCSDDFR-  419 (430)
T ss_pred             c------hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----cCCCCCceEEEeCCCCCceeeecccce-
Confidence            1      111234456667777776553 4679999999988776664    589999999999999999999999987 


Q ss_pred             EeEEEE
Q psy18018        622 ETKLLV  627 (635)
Q Consensus       622 ~~~l~~  627 (635)
                       .++|-
T Consensus       420 -aRFWy  424 (430)
T KOG0640|consen  420 -ARFWY  424 (430)
T ss_pred             -eeeee
Confidence             66664

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=4.1e-24  Score=206.54  Aligned_cols=216  Identities=17%  Similarity=0.253  Sum_probs=150.5

Q ss_pred             EEEe-cCcEEEEecCCCeEEEEEccCC-------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        348 GFQF-DGVHVVSGSLDTSIRVWEAESG-------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       348 ~~s~-~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      +|+| ++++|++|+.|+.|++||+.++       ..+..+.+|...|.+++|++.                         
T Consensus        82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-------------------------  136 (493)
T PTZ00421         82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-------------------------  136 (493)
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-------------------------
Confidence            3444 4444555555555555554432       345677889999999888631                         


Q ss_pred             EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018        420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                           .++.|++++.|+.|++||+.+++....+.+|...|.+++|  ++++|++++.|+.|++||+++++.+..+..   
T Consensus       137 -----~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---  208 (493)
T PTZ00421        137 -----AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---  208 (493)
T ss_pred             -----CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec---
Confidence                 1235666667777777777777788888899999999988  467999999999999999999998888876   


Q ss_pred             cccc-EEEEEe--cCCEEEEEe----CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec-
Q psy18018        498 HQSA-VTCLQF--NSRFVITSS----DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-  569 (635)
Q Consensus       498 ~~~~-v~~~~~--~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  569 (635)
                      |... ...+.|  ++..+++++    .|+.|++||+++.........         ......+....|++|+++|++++ 
T Consensus       209 H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---------~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        209 HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---------LDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec---------cCCCCceEEEEEcCCCCEEEEEEe
Confidence            5443 233444  455666543    479999999986542211110         01233455667899999999887 


Q ss_pred             CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCC
Q psy18018        570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETK  609 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  609 (635)
                      .|+.|++||+.+++.+....    .....++..++|.|.-
T Consensus       280 gDg~Iriwdl~~~~~~~~~~----~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        280 GEGNIRCFELMNERLTFCSS----YSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCeEEEEEeeCCceEEEee----ccCCCCCcceEecccc
Confidence            59999999999998776653    2355677888888743

>KOG0268|consensus

Probab=99.94  E-value=1.8e-26  Score=196.79  Aligned_cols=220  Identities=17%  Similarity=0.279  Sum_probs=186.1

Q ss_pred             CccccccccceEEEEEecCCCCCCC-ceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEcCCEEEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCE-SFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVS   96 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~-~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s   96 (635)
                      ...|.||.+.| .|+|=.    |.. ..+|+|+.|+.+        .|||....++..+++.|.+.| ..+.+....+++
T Consensus        59 v~~L~gHrdGV-~~lakh----p~~ls~~aSGs~DG~V--------kiWnlsqR~~~~~f~AH~G~V-~Gi~v~~~~~~t  124 (433)
T KOG0268|consen   59 VGSLDGHRDGV-SCLAKH----PNKLSTVASGSCDGEV--------KIWNLSQRECIRTFKAHEGLV-RGICVTQTSFFT  124 (433)
T ss_pred             hhhcccccccc-chhhcC----cchhhhhhccccCceE--------EEEehhhhhhhheeecccCce-eeEEecccceEE
Confidence            45679999999 999999    655 789999876544        469999999999999999988 999999778899


Q ss_pred             eeCCCcEEEEECCCC-------------------cEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCE
Q psy18018         97 GSDDNTLKVWSATTG-------------------KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKL  154 (635)
Q Consensus        97 ~~~d~~v~vWd~~~~-------------------~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~  154 (635)
                      +|+|++|+.|.+.-.                   ..+++|++  -.|.|||.+...++..+.--...|.++.|   ....
T Consensus       125 vgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             ecCCcceeeeeccCCcceeeeccccccccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence            999999999985431                   11134433  35999999999999999988889999999   5678


Q ss_pred             EEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEee-
Q psy18018        155 VVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA-  232 (635)
Q Consensus       155 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~-  232 (635)
                      |++|+.|++|.+||+..+.++............++.|..-.+.+|.+|..++.+|++. ..++....+|...|.++.|+ 
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            9999999999999999999998877766655566666667788899999999999986 56778889999999999996 


Q ss_pred             -CCEEEEeeCceeEEEecccce
Q psy18018        233 -GNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       233 -~~~l~s~~~dg~i~~w~~~~~  253 (635)
                       |+.+++||.|.+|+++.....
T Consensus       283 tG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  283 TGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             CcchhccccccceEEEeecCCC
Confidence             899999999999999987653

>KOG0268|consensus

Probab=99.94  E-value=3.1e-26  Score=195.37  Aligned_cols=264  Identities=15%  Similarity=0.200  Sum_probs=210.7

Q ss_pred             CCceEEEEecC-cEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        343 VPDLFGFQFDG-VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       343 ~~~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ...+++-+|.. ..+++|+.||.|++||+.+..+...+..|.+.|.+++++...+++++.|.+|+.|.+... ....+..
T Consensus        68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~-p~~tilg  146 (433)
T KOG0268|consen   68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP-PLHTILG  146 (433)
T ss_pred             ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC-cceeeec
Confidence            34445555644 668999999999999999999999999999999999999999999999999999998764 2221111


Q ss_pred             ------E--eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeE
Q psy18018        422 ------C--LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       422 ------~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~  490 (635)
                            .  ...+..+++++  ..|.+||..-..+++.+.-....+.++.+++   .+|++++.|+.|.+||++.+.++.
T Consensus       147 ~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~  224 (433)
T KOG0268|consen  147 KSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK  224 (433)
T ss_pred             cccccccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence                  0  11233444443  4599999998889999888888899999875   489999999999999999999988


Q ss_pred             EecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        491 TLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      .+.    ....-..++|+  +-.+++|++|.+++.||++..+.....          ...|...|..+.|||.|+-+++|
T Consensus       225 KVi----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v----------~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  225 KVI----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV----------HKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             eee----eeccccceecCccccceeeccccccceehhhhhhcccchh----------hcccceeEEEeccCCCcchhccc
Confidence            776    34455667885  566889999999999999876533222          23478899999999999999999


Q ss_pred             cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        569 SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       569 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +.|.+|+||....+...-.+-    ......|.++.||.|.+++++|++|+.  ++||.-.
T Consensus       291 syDksIRIf~~~~~~SRdiYh----tkRMq~V~~Vk~S~Dskyi~SGSdd~n--vRlWka~  345 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYH----TKRMQHVFCVKYSMDSKYIISGSDDGN--VRLWKAK  345 (433)
T ss_pred             cccceEEEeecCCCcchhhhh----HhhhheeeEEEEeccccEEEecCCCcc--eeeeecc
Confidence            999999999998876544332    123467999999999999999999998  7888643

>KOG0647|consensus

Probab=99.94  E-value=7.5e-25  Score=182.43  Aligned_cols=269  Identities=16%  Similarity=0.214  Sum_probs=205.8

Q ss_pred             ccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccC-CceE-EeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccC
Q psy18018        338 NKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAES-GNLR-HTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       338 ~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~-~~~~-~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~  412 (635)
                      ......+..++||| ...++++++.||+||+|+++. +..+ +....|.+++.+++|+  +..+++++.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            44556677899999 566677999999999999986 3333 4566799999999997  77999999999999999999


Q ss_pred             CcceeEEEE--------Eee--CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEE
Q psy18018        413 GTKKLMFRI--------CLF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD  482 (635)
Q Consensus       413 ~~~~~~~~~--------~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd  482 (635)
                      ++.......        +-+  .-..|++|++|.+|++||.+...++.++. -...+.++..-..+++++..++.|.+|+
T Consensus       104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYN  182 (347)
T ss_pred             CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEE
Confidence            865433221        222  34579999999999999999988888776 4567888888888999999999999999


Q ss_pred             CCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce--eeeeccceecCceeEEeccCceecccc
Q psy18018        483 IVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEF--STPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      ++++....... ..+..-.+.|++.  |....+.|+-+|.+.+..+..+..  .-.++.|.......  ..--.|++++|
T Consensus       183 L~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~--~~VYaVNsi~F  259 (347)
T KOG0647|consen  183 LENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN--DDVYAVNSIAF  259 (347)
T ss_pred             cCCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC--CceEEecceEe
Confidence            97654322211 1113445666766  666779999999999999987632  22333332221100  01126889999


Q ss_pred             cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        559 QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       559 s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                      +|.-..|+|++.||++.+||-.....++..     ..+..+|++..|+.+|.++|-+
T Consensus       260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s-----~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTS-----ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ecccceEEEecCCceEEEecchhhhhhhcc-----CcCCCccceeEecCCCCEEEEE
Confidence            999999999999999999998888878777     5788999999999999988855

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=9.6e-24  Score=204.60  Aligned_cols=285  Identities=12%  Similarity=0.177  Sum_probs=190.5

Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCC
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      ++++.+....+|++..       |+.++.+++|+.....++..+.+|.++|.+++|   ++.+||+|+.||+|++||+.+
T Consensus        34 ia~n~~~~A~~w~~~g-------GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t  106 (568)
T PTZ00420         34 IACSSGFVAVPWEVEG-------GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH  106 (568)
T ss_pred             EeeCCCeEEEEEEcCC-------CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Confidence            4445555566888763       556788999998888888999999999999999   368999999999999999875


Q ss_pred             ccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEeccc
Q psy18018        172 EECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNA  251 (635)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~  251 (635)
                      +.....                                 ....++..+.+|...|.+++                     
T Consensus       107 ~~~~~~---------------------------------~i~~p~~~L~gH~~~V~sVa---------------------  132 (568)
T PTZ00420        107 NDESVK---------------------------------EIKDPQCILKGHKKKISIID---------------------  132 (568)
T ss_pred             CCcccc---------------------------------ccccceEEeecCCCcEEEEE---------------------
Confidence            421000                                 00123345667888777776                     


Q ss_pred             ceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhh
Q psy18018        252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE  331 (635)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (635)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (568)
T PTZ00420        133 --------------------------------------------------------------------------------  132 (568)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccccccCCCceEEEEecCcE-EEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEc
Q psy18018        332 AATLHRNKKTHVPDLFGFQFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI  410 (635)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~  410 (635)
                                       |+|++.. +++++.|+.|++||+.+++....+. |...|.+++|+                  
T Consensus       133 -----------------f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws------------------  176 (568)
T PTZ00420        133 -----------------WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN------------------  176 (568)
T ss_pred             -----------------ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC------------------
Confidence                             4444443 3566667777777777666555554 44566777665                  


Q ss_pred             cCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE-------ecCCEEEEEeCCC----cEE
Q psy18018        411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME-------LRNNILVSGNADS----TVK  479 (635)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~-------~~~~~l~s~~~dg----~i~  479 (635)
                                   ++|..|++++.|+.|++||+++++.+.++.+|.+.+.+..       .+++++++++.|+    +|+
T Consensus       177 -------------pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        177 -------------IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             -------------CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence                         5677788888888889999998888888999987543322       3567888888774    799


Q ss_pred             EEECCC-CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        480 VWDIVS-GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       480 iwd~~~-~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      |||+++ .+++..+... .+...+.....  ++.++++|+.|++|++|++..+.. ..+.         ...+..+..++
T Consensus       244 LWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~---------~~~s~~p~~g~  312 (568)
T PTZ00420        244 LWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVN---------EYKSCSPFRSF  312 (568)
T ss_pred             EEECCCCCCceEEEEec-CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eeec---------ccccCCCccce
Confidence            999985 5556554421 12222222211  488999999999999999987642 2221         11245678889


Q ss_pred             cccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        557 HLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       557 ~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                      +|.|...+=+  ...-..|+|.+...
T Consensus       313 ~f~Pkr~~dv--~~cEi~R~~kl~~~  336 (568)
T PTZ00420        313 GFLPKQICDV--YKCEIGRVYKNENN  336 (568)
T ss_pred             EEccccccCc--hhhhHhHHhhhcCC
Confidence            9998653211  11223455555433

>KOG0973|consensus

Probab=99.94  E-value=9.1e-25  Score=213.50  Aligned_cols=302  Identities=24%  Similarity=0.343  Sum_probs=230.2

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC------------CCCceeeccCcceEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI------------KDPKVLKGHDDHVIT   85 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~------------~~~~~l~~h~~~vi~   85 (635)
                      ...+-+|.+..|-+++.+    |||..+|+|+..      .++.+.||+.++.            +.+..+..|.+.| +
T Consensus         5 kp~wv~H~~~~IfSIdv~----pdg~~~aTgGq~------~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv-~   73 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVH----PDGVKFATGGQV------LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSV-N   73 (942)
T ss_pred             cccccccCCeeEEEEEec----CCceeEecCCcc------ccccceeeccccccchhhhhhcccchhheeeccccCce-e
Confidence            356678888888999999    999999999842      2333446875542            3445677899988 9


Q ss_pred             EEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC
Q psy18018         86 CLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD  161 (635)
Q Consensus        86 ~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d  161 (635)
                      |+.|+  |++||+||+|+.|.+|.......-=+.|+..|.   =+++..+.+..+.+|.+.|..++|  ++.+|++++.|
T Consensus        74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~---~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGA---KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccc---cccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence            99999  999999999999999998741000011111121   245666889999999999999999  89999999999


Q ss_pred             CeEEEEeCCCccceeeccccceeEEeeec-cCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEee
Q psy18018        162 YMVKIWNPDTEECLHAELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGS  240 (635)
Q Consensus       162 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~  240 (635)
                      ++|.+||..+.+.+..+..|...+....+ |.+.++++-+.|++|++|++.+....+.+..+.....             
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~-------------  217 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP-------------  217 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC-------------
Confidence            99999999999988888888776665555 4478888999999999999877666666654332110             


Q ss_pred             CceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeec
Q psy18018        241 TDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAE  320 (635)
Q Consensus       241 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (635)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (942)
T KOG0973|consen  218 --------------------------------------------------------------------------------  217 (942)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC----CCeEEEEEccCCceEEeeeCCCcceeEEEEe----
Q psy18018        321 DNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL----DTSIRVWEAESGNLRHTLMGHQSLTSGMELR----  392 (635)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~----  392 (635)
                                         ......-+.|||||.+|++...    ...+.+.+-.+-+.-..+-+|..++.++.|+    
T Consensus       218 -------------------~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf  278 (942)
T KOG0973|consen  218 -------------------LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF  278 (942)
T ss_pred             -------------------CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh
Confidence                               0011112348999999988643    3468888877777778899999999999995    


Q ss_pred             ---CC------------EEEEEeCCCcEEEEEccCCcceeEEE----------EEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        393 ---NN------------ILVSGNADSTVKVWDIVSGTKKLMFR----------ICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       393 ---~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                         ..            .+++|+.|++|.+|.....++.....          .++|||..|++++.||+|.++.++.
T Consensus       279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence               12            68899999999999997766544332          4889999999999999999998865

>KOG0647|consensus

Probab=99.94  E-value=2.1e-24  Score=179.80  Aligned_cols=273  Identities=18%  Similarity=0.257  Sum_probs=205.0

Q ss_pred             cCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeE-EEEeeCCCcceEEEEe--cC
Q psy18018         79 HDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGEC-LHVLVGHLAAVRCVQY--DG  152 (635)
Q Consensus        79 h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~-~~~l~~h~~~v~~l~~--~~  152 (635)
                      .++.| .+++||   ..+++.+|-|++||+|+++..                    +.. -.....|.++|.+++|  ||
T Consensus        26 P~DsI-S~l~FSP~~~~~~~A~SWD~tVR~wevq~~--------------------g~~~~ka~~~~~~PvL~v~Wsddg   84 (347)
T KOG0647|consen   26 PEDSI-SALAFSPQADNLLAAGSWDGTVRIWEVQNS--------------------GQLVPKAQQSHDGPVLDVCWSDDG   84 (347)
T ss_pred             cccch-heeEeccccCceEEecccCCceEEEEEecC--------------------CcccchhhhccCCCeEEEEEccCC
Confidence            34555 999999   677778999999999998742                    111 1344579999999999  89


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCC--EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEE
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRS--RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ  230 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  230 (635)
                      ..+++|+.|+.+++||+.+++....-.+..++..+.+.....  .|++|+.|.+|+.||++...++.++. -...++++.
T Consensus        85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D  163 (347)
T KOG0647|consen   85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD  163 (347)
T ss_pred             ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence            999999999999999999998777777777777777776655  89999999999999999999998875 567788888


Q ss_pred             eeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        231 MAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       231 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                      .....++.+..++.|.+|+++........                                                   
T Consensus       164 v~~pm~vVata~r~i~vynL~n~~te~k~---------------------------------------------------  192 (347)
T KOG0647|consen  164 VLYPMAVVATAERHIAVYNLENPPTEFKR---------------------------------------------------  192 (347)
T ss_pred             ccCceeEEEecCCcEEEEEcCCCcchhhh---------------------------------------------------
Confidence            88999999999999999998764321111                                                   


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC--ceEEeeeCCCcceeE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSG  388 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~v~~  388 (635)
                                               ...+.....+++++-.|....+.|+-+|.+.+..++.+  +.-..++.|...-. 
T Consensus       193 -------------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-  246 (347)
T KOG0647|consen  193 -------------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-  246 (347)
T ss_pred             -------------------------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-
Confidence                                     11223456677888888888899999999999999876  34456666663110 


Q ss_pred             EEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C
Q psy18018        389 MELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N  466 (635)
Q Consensus       389 l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~  466 (635)
                                  .++  .+|-++       ...|.|.-..|++++.||+..+||-.....+.+.+.|..+|++.+|+  |
T Consensus       247 ------------~~~--~VYaVN-------si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  247 ------------VND--DVYAVN-------SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             ------------CCC--ceEEec-------ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC
Confidence                        000  111111       11244566678888888888888887777778888899999998885  4


Q ss_pred             CEEEE
Q psy18018        467 NILVS  471 (635)
Q Consensus       467 ~~l~s  471 (635)
                      .+++-
T Consensus       306 ~ifaY  310 (347)
T KOG0647|consen  306 SIFAY  310 (347)
T ss_pred             CEEEE
Confidence            55443

>KOG0640|consensus

Probab=99.94  E-value=3.4e-25  Score=185.05  Aligned_cols=303  Identities=22%  Similarity=0.330  Sum_probs=221.3

Q ss_pred             EEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC
Q psy18018        135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT  212 (635)
Q Consensus       135 ~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  212 (635)
                      ...+..|.+++.+-+|  ||.++|+|+.|.+|+|.|++.--...   .+            ..+..+.         ...
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~------------~em~~~~---------~qa  160 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KP------------KEMISGD---------TQA  160 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---ch------------hhhccCC---------ccc
Confidence            4567789999999999  99999999999999999986311000   00            0011111         111


Q ss_pred             -CeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccc
Q psy18018        213 -GKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP  289 (635)
Q Consensus       213 -~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (635)
                       --.++++-.|..+|..+.|.  ...|++++.|++|+++|+.....                                  
T Consensus       161 ~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa----------------------------------  206 (430)
T KOG0640|consen  161 RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA----------------------------------  206 (430)
T ss_pred             CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH----------------------------------
Confidence             24567888999999999996  67899999999999999765311                                  


Q ss_pred             cceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEE
Q psy18018        290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWE  369 (635)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~  369 (635)
                                                                ..........+...+++|+|.|.++++|+....+++||
T Consensus       207 ------------------------------------------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd  244 (430)
T KOG0640|consen  207 ------------------------------------------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD  244 (430)
T ss_pred             ------------------------------------------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence                                                      11111223346677888999999999999999999999


Q ss_pred             ccCCceEEee---eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC
Q psy18018        370 AESGNLRHTL---MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG  446 (635)
Q Consensus       370 ~~~~~~~~~~---~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  446 (635)
                      +++.++....   ..|.+.|+++.++                               +.++..++++.||.|++||--++
T Consensus       245 v~T~QcfvsanPd~qht~ai~~V~Ys-------------------------------~t~~lYvTaSkDG~IklwDGVS~  293 (430)
T KOG0640|consen  245 VNTYQCFVSANPDDQHTGAITQVRYS-------------------------------STGSLYVTASKDGAIKLWDGVSN  293 (430)
T ss_pred             ccceeEeeecCcccccccceeEEEec-------------------------------CCccEEEEeccCCcEEeeccccH
Confidence            9988775443   4578888888876                               34555666666667777776777


Q ss_pred             ceeeeec-cCCc-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--ccccEEEEEec--CCEEEEEe-C
Q psy18018        447 NLRHTLM-GHQS-LTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQSAVTCLQFN--SRFVITSS-D  517 (635)
Q Consensus       447 ~~~~~~~-~~~~-~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~~~~-~  517 (635)
                      +++.++. .|.+ .|.+..|  +++++++.+.|..+++|.+.+++++.++.+...  ...--+...|+  ..|++.-. .
T Consensus       294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa  373 (430)
T KOG0640|consen  294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA  373 (430)
T ss_pred             HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence            7777765 3554 6666666  688999999999999999999999999876311  11111223342  55655544 3


Q ss_pred             CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      .+.+.-||.++........          ..|++.+..+.-||.+.-+++++.|...++|-
T Consensus       374 s~slcsWdaRtadr~~l~s----------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  374 SNSLCSWDARTADRVALLS----------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             cCceeeccccchhhhhhcc----------cCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            5679999999887554443          34899999999999999999999999999995

>KOG4283|consensus

Probab=99.94  E-value=3.8e-24  Score=177.56  Aligned_cols=307  Identities=20%  Similarity=0.292  Sum_probs=203.4

Q ss_pred             eccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---
Q psy18018         77 KGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---  150 (635)
Q Consensus        77 ~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---  150 (635)
                      .-|.+.| +++...   |+|+++|+.||.|.|||++.....=+++---..+.+  +    ....-.+|.-.|..+.|   
T Consensus        40 r~HgGsv-NsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~--v----~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   40 RPHGGSV-NSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI--V----AKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             ccCCCcc-ceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee--c----cccCCccceeeeeeeEEeee
Confidence            4577877 899888   999999999999999999864321111100001110  0    01122378889999998   


Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccC---CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL---RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW  227 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  227 (635)
                      |...+.+++.|.++++||..+.+....+..+..+...+..+.   .-++++|..+-.|++-|+.+|..-.++.||.+.|.
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence            889999999999999999999998888877766655554443   34677888889999999999999999999999999


Q ss_pred             EEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        228 SSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       228 ~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      ++.|+   .-.|++|+.||.|++||++...--+                                     ..+...    
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf-------------------------------------~~lD~h----  231 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCF-------------------------------------RVLDQH----  231 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeeccccee-------------------------------------EEeecc----
Confidence            99996   3478999999999999986531000                                     000000    


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhh-ccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC--
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATL-HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG--  381 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~--  381 (635)
                                       +.      ...+.. ....+......++++.++.++++.+.|..+++|+..+|+....-.+  
T Consensus       232 -----------------n~------k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~  288 (397)
T KOG4283|consen  232 -----------------NT------KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI  288 (397)
T ss_pred             -----------------cC------ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence                             00      000000 0111222233455666666667777777777776666653211110  


Q ss_pred             -CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE
Q psy18018        382 -HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS  460 (635)
Q Consensus       382 -~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~  460 (635)
                       |+.. ..++    +.+.                        +.+...++.--.++.+.++++-+++.+..+..|...+.
T Consensus       289 ~~n~~-~~~~----~~~~------------------------~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~  339 (397)
T KOG4283|consen  289 IHNQT-TSFA----VHIQ------------------------SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN  339 (397)
T ss_pred             ccccc-ccce----EEEe------------------------ecccceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence             1100 0011    1111                        11222233333558899999999999999999988898


Q ss_pred             EEEecCC--EEEEEeCCCcEEEEEC
Q psy18018        461 GMELRNN--ILVSGNADSTVKVWDI  483 (635)
Q Consensus       461 ~~~~~~~--~l~s~~~dg~i~iwd~  483 (635)
                      +..+.++  ...++..|+.|..|-.
T Consensus       340 c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  340 CAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEeecCchhhhhccccCCccccccc
Confidence            8888766  6889999999999976

>KOG2096|consensus

Probab=99.94  E-value=1.5e-24  Score=181.98  Aligned_cols=296  Identities=20%  Similarity=0.224  Sum_probs=199.3

Q ss_pred             EEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceee
Q psy18018        217 RTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELAL  294 (635)
Q Consensus       217 ~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (635)
                      ..+++|.+.|++++|  +|..|+|++.|++|++|++++-...                                      
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--------------------------------------  121 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--------------------------------------  121 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--------------------------------------
Confidence            456899999999999  5999999999999999998762110                                      


Q ss_pred             EEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-CCCeEEEEEccCC
Q psy18018        295 YVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-LDTSIRVWEAESG  373 (635)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~  373 (635)
                                                          +-..+........++.+.|+||.+-++... ....+++|.+...
T Consensus       122 ------------------------------------eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen  122 ------------------------------------EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             ------------------------------------hhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence                                                001111122233566778999887665544 4557888886532


Q ss_pred             ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE-EEeeCCcEEEEEeCCCcEEEEeCCCCceeeee
Q psy18018        374 NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR-ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL  452 (635)
Q Consensus       374 ~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  452 (635)
                      +- .....|.-.+-.+.|.                   ......+.. -...+++++++++.|..|.+|++. |+.++.+
T Consensus       166 ~d-G~~~~~~v~~D~~~f~-------------------~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  166 TD-GSGSHHFVHIDNLEFE-------------------RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             cc-CCCCcccccccccccc-------------------hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence            21 1111111111111111                   001111111 122356778889999999999998 8888777


Q ss_pred             ccCC--ccEEEEEecCCEEEEEeCCCcEEEEECC---CC-----ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCc
Q psy18018        453 MGHQ--SLTSGMELRNNILVSGNADSTVKVWDIV---SG-----QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT  520 (635)
Q Consensus       453 ~~~~--~~v~~~~~~~~~l~s~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~  520 (635)
                      ....  ..-.+++++|+++++++---.|++|.+-   +|     ..+..+++   |...|.+++|  +.+.+++.|.||+
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG---H~saV~~~aFsn~S~r~vtvSkDG~  301 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG---HQSAVLAAAFSNSSTRAVTVSKDGK  301 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc---chhheeeeeeCCCcceeEEEecCCc
Confidence            6543  3456788899999999998899999863   22     23345555   9999999999  5789999999999


Q ss_pred             EEEEECCCC----ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCC
Q psy18018        521 VKLWDVKTG----EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS  596 (635)
Q Consensus       521 i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  596 (635)
                      +++||..-.    +-...++.    .+....+....-..++++|+|+.||.+. ...++++..++|+....+.    ..|
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~----g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e----~~h  372 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKE----GSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE----DIH  372 (420)
T ss_pred             EEEeeccceEecCCCchHhhc----CCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH----Hhh
Confidence            999998632    11111111    1111111223334899999999998654 5579999999999887776    578


Q ss_pred             CceEEEEEeCCCCeEEEEccCCC
Q psy18018        597 GGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       597 ~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      ...|.+++|++||++++++++--
T Consensus       373 ~~~Is~is~~~~g~~~atcGdr~  395 (420)
T KOG2096|consen  373 STTISSISYSSDGKYIATCGDRY  395 (420)
T ss_pred             cCceeeEEecCCCcEEeeeccee
Confidence            99999999999999999998754

>KOG0305|consensus

Probab=99.94  E-value=1.5e-24  Score=200.81  Aligned_cols=261  Identities=19%  Similarity=0.296  Sum_probs=210.1

Q ss_pred             chheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEe
Q psy18018         51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWH  128 (635)
Q Consensus        51 ~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd  128 (635)
                      ...+.++.+..+.+|+..+++.......+.+.| +++.|+  |++||.|..+|.|.|||..                   
T Consensus       188 ~n~laValg~~vylW~~~s~~v~~l~~~~~~~v-tSv~ws~~G~~LavG~~~g~v~iwD~~-------------------  247 (484)
T KOG0305|consen  188 ANVLAVALGQSVYLWSASSGSVTELCSFGEELV-TSVKWSPDGSHLAVGTSDGTVQIWDVK-------------------  247 (484)
T ss_pred             CCeEEEEecceEEEEecCCCceEEeEecCCCce-EEEEECCCCCEEEEeecCCeEEEEehh-------------------
Confidence            345556667788889999998777777777777 999999  9999999999988888876                   


Q ss_pred             CCCCeEEEEeeC-CCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceee-ccccceeEEe-eeccCCCEEEEEeCCCcE
Q psy18018        129 IESGECLHVLVG-HLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHA-ELQETEVELS-HGYALRSRIVSGSDDNTL  205 (635)
Q Consensus       129 ~~~~~~~~~l~~-h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~-~~~~~~~~l~~~~~dg~i  205 (635)
                        +.+.+..+.+ |...|-+++|.+..+.+|+.|+.|..+|+...+.... ...+...++. ...+++.++++|+.|+.+
T Consensus       248 --~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~  325 (484)
T KOG0305|consen  248 --EQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV  325 (484)
T ss_pred             --hccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence              4455677777 9999999999999999999999999999998877666 5555554444 445667899999999999


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEee---CCEEEEee--CceeEEEecccceeeeccccccccCccceeeeeeeecccc
Q psy18018        206 KVWSATTGKCLRTLIGHTGGVWSSQMA---GNIIISGS--TDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF  280 (635)
Q Consensus       206 ~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (635)
                      .|||....+++..+..|.+.|.+++|+   .+.|++|+  .|+.|++||..++....                       
T Consensus       326 ~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-----------------------  382 (484)
T KOG0305|consen  326 FIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-----------------------  382 (484)
T ss_pred             EeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-----------------------
Confidence            999998889999999999999999995   78899976  59999999987643211                       


Q ss_pred             ccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE--
Q psy18018        281 QRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS--  358 (635)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--  358 (635)
                                                                              ......++..+.|++..+-+++  
T Consensus       383 --------------------------------------------------------~vdtgsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  383 --------------------------------------------------------SVDTGSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             --------------------------------------------------------ccccCCceeeEEEcCCCCEEEEec
Confidence                                                                    1122334445668887765555  


Q ss_pred             ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccC
Q psy18018        359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~  412 (635)
                      |..++.|.||+..+.+.+..+.+|...|..++++  +..+++++.|.++++|++-.
T Consensus       407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            4567899999999999999999999999999987  45777777777777777654

>KOG0772|consensus

Probab=99.93  E-value=1.7e-24  Score=193.35  Aligned_cols=275  Identities=19%  Similarity=0.211  Sum_probs=210.2

Q ss_pred             EEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcccee----ec--cccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018        135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLH----AE--LQETEVELSHGYALRSRIVSGSDDNTLK  206 (635)
Q Consensus       135 ~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~----~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~  206 (635)
                      .-.|++|+..|.++++  .|.++++|+.|.+|++||+..-....    .+  ...+.+....+...++.+++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            3467899999999999  79999999999999999988643222    11  1224455556666788999999999999


Q ss_pred             EEECCCCeEEEE------------EeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceee
Q psy18018        207 VWSATTGKCLRT------------LIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH  271 (635)
Q Consensus       207 vwd~~~~~~~~~------------~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~  271 (635)
                      ++|-...+.+..            -+||...+++.+|+   .+.++|++.||++|+|++........             
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-------------  306 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-------------  306 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-------------
Confidence            999654443322            26899999999995   67899999999999999875321000             


Q ss_pred             eeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe
Q psy18018        272 MMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF  351 (635)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  351 (635)
                         +.                                                        .........-.+..++|++
T Consensus       307 ---Vi--------------------------------------------------------k~k~~~g~Rv~~tsC~~nr  327 (641)
T KOG0772|consen  307 ---VI--------------------------------------------------------KTKPAGGKRVPVTSCAWNR  327 (641)
T ss_pred             ---EE--------------------------------------------------------eeccCCCcccCceeeecCC
Confidence               00                                                        0000112223455678999


Q ss_pred             cCcEEEEecCCCeEEEEEccCCc---eEEeeeCCCc--ceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee-------
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGN---LRHTLMGHQS--LTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL-------  417 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~~~~--~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-------  417 (635)
                      +|..+|+|+.||.|.+|+..+..   ....-..|..  .|+++.|+  +++|++-+.|+++++||++..+...       
T Consensus       328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~  407 (641)
T KOG0772|consen  328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP  407 (641)
T ss_pred             CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC
Confidence            99999999999999999975432   2344567777  99999997  8899999999999999998765432       


Q ss_pred             -----EEEEEeeCCcEEEEEe------CCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCCCcEEEE
Q psy18018        418 -----MFRICLFDGVHVVSGS------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW  481 (635)
Q Consensus       418 -----~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iw  481 (635)
                           .-.+|+|+.+.+++|+      ..+.+.+||..+...++++.-....|..+.|+++  .+.+|+.||.+++|
T Consensus       408 t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  408 TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence                 2335899999999986      3578999999999999998888888888999875  78888999999986

>KOG0289|consensus

Probab=99.93  E-value=7.2e-24  Score=185.37  Aligned_cols=271  Identities=18%  Similarity=0.249  Sum_probs=213.7

Q ss_pred             EEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEE
Q psy18018         29 ITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVW  106 (635)
Q Consensus        29 i~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vW  106 (635)
                      |+++..+    |....+++|+.++        ..+++|.++.+.+.+|+||.-.+ +.+.|+  ...+++++.|..|+||
T Consensus       222 i~ald~~----~s~~~ilTGG~d~--------~av~~d~~s~q~l~~~~Gh~kki-~~v~~~~~~~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  222 ITALDII----PSSSKILTGGEDK--------TAVLFDKPSNQILATLKGHTKKI-TSVKFHKDLDTVITASADEIIRVW  288 (506)
T ss_pred             eeEEeec----CCCCcceecCCCC--------ceEEEecchhhhhhhccCcceEE-EEEEeccchhheeecCCcceEEee
Confidence            4778877    6667788887653        33459999999999999999888 899999  6778888888888888


Q ss_pred             ECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecccc---
Q psy18018        107 SATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQE---  181 (635)
Q Consensus       107 d~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---  181 (635)
                      ....                     .........|.++|+.+..  .|.+|++++.||+..+.|++++..+......   
T Consensus       289 s~~~---------------------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~  347 (506)
T KOG0289|consen  289 SVPL---------------------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD  347 (506)
T ss_pred             cccc---------------------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence            8653                     3345667799999999998  8999999999999999999999887765543   


Q ss_pred             ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccc
Q psy18018        182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQ  259 (635)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~  259 (635)
                      -......+.+++..+.+|..||.+++||+.++..+..|.+|+++|.++.|  +|-+|+++..|+.|++||++........
T Consensus       348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence            33556666777788889999999999999999999999999999999999  4889999999999999998764311000


Q ss_pred             cccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccc
Q psy18018        260 LIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNK  339 (635)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (635)
                                                                                                   ...
T Consensus       428 -----------------------------------------------------------------------------~l~  430 (506)
T KOG0289|consen  428 -----------------------------------------------------------------------------QLD  430 (506)
T ss_pred             -----------------------------------------------------------------------------ecc
Confidence                                                                                         001


Q ss_pred             ccCCCceEEEEecCcEEEEecCCCeEEEEEcc--CCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEc
Q psy18018        340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI  410 (635)
Q Consensus       340 ~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~  410 (635)
                      .......++|.+.|.+|+.++.+=.|++++-.  +.+.+..+..|.+..+++.|.  ..++++++.|..++++.+
T Consensus       431 ~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  431 EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            11234456788899999999877566665533  445677788888889999996  568888888888777643

>KOG0646|consensus

Probab=99.93  E-value=4.2e-24  Score=188.83  Aligned_cols=293  Identities=20%  Similarity=0.319  Sum_probs=198.9

Q ss_pred             cEEEEeCCCCeEEEEeeCC-CcceEEEEe-cCCEEEEEe-CCCeEEEEeCCCcccee-eccccceeEEeeeccCCCEEEE
Q psy18018        123 TLRVWHIESGECLHVLVGH-LAAVRCVQY-DGKLVVSGA-YDYMVKIWNPDTEECLH-AELQETEVELSHGYALRSRIVS  198 (635)
Q Consensus       123 ~i~vwd~~~~~~~~~l~~h-~~~v~~l~~-~~~~l~s~~-~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  198 (635)
                      ++.+||+++|.....+++- ...-.++.. .+.+++++. ....+.+|.+....... ....+..+.....++.+.+|+.
T Consensus        19 ~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a   98 (476)
T KOG0646|consen   19 NCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA   98 (476)
T ss_pred             ceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEe
Confidence            4777777777777777764 223233333 566666665 45578999988776655 4444555666667777788888


Q ss_pred             EeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeee
Q psy18018        199 GSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLI  276 (635)
Q Consensus       199 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (635)
                      |+..|.+++|.+.+|+++..+.+|-..|+++.|  ++.+|+|||.||.|.+|.+..-.......                
T Consensus        99 g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~----------------  162 (476)
T KOG0646|consen   99 GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH----------------  162 (476)
T ss_pred             ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC----------------
Confidence            889999999999999999999999999999999  58899999999999999865421100000                


Q ss_pred             ccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE----ec
Q psy18018        277 EPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ----FD  352 (635)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~  352 (635)
                                                                             ..........|...+..+.    +.
T Consensus       163 -------------------------------------------------------~~~p~~~f~~HtlsITDl~ig~Gg~  187 (476)
T KOG0646|consen  163 -------------------------------------------------------SVKPLHIFSDHTLSITDLQIGSGGT  187 (476)
T ss_pred             -------------------------------------------------------CccceeeeccCcceeEEEEecCCCc
Confidence                                                                   0000011112222222221    13


Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      ..++++++.|.++++||+..+..+.++.. ...+.+++.+  +..++.|+.+|.|.+.++......              
T Consensus       188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~--------------  252 (476)
T KOG0646|consen  188 NARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ--------------  252 (476)
T ss_pred             cceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcc--------------
Confidence            45677788888888888877777766654 4466677666  556777777777776665432110              


Q ss_pred             EEeCCCcEEEEeCCCCceeeeeccCCc--cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  506 (635)
                        ..+=..+.++. .+.....+.+|.+  .|+|++.  ++.+|++|+.||.++|||+.+.++++++..   ..++|+.+.
T Consensus       253 --~~~v~~k~~~~-~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtnL~  326 (476)
T KOG0646|consen  253 --SAGVNQKGRHE-ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTNLQ  326 (476)
T ss_pred             --ccccccccccc-ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh---hccccceeE
Confidence              00000122221 2455677888988  8998876  799999999999999999999999998875   567888777


Q ss_pred             e
Q psy18018        507 F  507 (635)
Q Consensus       507 ~  507 (635)
                      +
T Consensus       327 i  327 (476)
T KOG0646|consen  327 I  327 (476)
T ss_pred             e
Confidence            7

>KOG1036|consensus

Probab=99.93  E-value=3e-23  Score=173.71  Aligned_cols=264  Identities=15%  Similarity=0.207  Sum_probs=200.8

Q ss_pred             CcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEE
Q psy18018         80 DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVV  156 (635)
Q Consensus        80 ~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~  156 (635)
                      .+.| ..+.|+  ++.|+.++-||++++||+..                     .+....+ .|..++.+++| |...++
T Consensus        13 ~d~I-S~v~f~~~~~~LLvssWDgslrlYdv~~---------------------~~l~~~~-~~~~plL~c~F~d~~~~~   69 (323)
T KOG1036|consen   13 EDGI-SSVKFSPSSSDLLVSSWDGSLRLYDVPA---------------------NSLKLKF-KHGAPLLDCAFADESTIV   69 (323)
T ss_pred             hhce-eeEEEcCcCCcEEEEeccCcEEEEeccc---------------------hhhhhhe-ecCCceeeeeccCCceEE
Confidence            4455 899999  66777777888888887753                     2222333 68999999999 999999


Q ss_pred             EEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEE
Q psy18018        157 SGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNII  236 (635)
Q Consensus       157 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l  236 (635)
                      +|+.||.|+.+|+.++.......+...+.+.......+.+++|+.|++|++||.+.......+. ....|.++...++.|
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~L  148 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRL  148 (323)
T ss_pred             EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCCEE
Confidence            9999999999999999888777777778887777888999999999999999998766665554 344899999999999


Q ss_pred             EEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccccee
Q psy18018        237 ISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWR  316 (635)
Q Consensus       237 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (635)
                      +.|+.|..+.+||++.......                                                          
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q----------------------------------------------------------  170 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQ----------------------------------------------------------  170 (323)
T ss_pred             EEeecCceEEEEEcccccchhh----------------------------------------------------------
Confidence            9999999999999886432110                                                          


Q ss_pred             EeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC----ceEEeeeCCCc--------
Q psy18018        317 FLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG----NLRHTLMGHQS--------  384 (635)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~~~~~~~~~~--------  384 (635)
                                        ........+.+++++-|++.-+++++-||.|.+=.++..    +....|+.|..        
T Consensus       171 ------------------~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  171 ------------------RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             ------------------hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence                              001112234566778888888999999999988666554    34455666643        


Q ss_pred             -ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE
Q psy18018        385 -LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  463 (635)
Q Consensus       385 -~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  463 (635)
                       +|++++|                               +|-.+.|++|+.||.|.+||+.+.+.+..+..-+..|.+++
T Consensus       233 yPVNai~F-------------------------------hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls  281 (323)
T KOG1036|consen  233 YPVNAIAF-------------------------------HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS  281 (323)
T ss_pred             EEeceeEe-------------------------------ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE
Confidence             3444444                               35556678888888888888888888888877777788888


Q ss_pred             e--cCCEEEEEeC
Q psy18018        464 L--RNNILVSGNA  474 (635)
Q Consensus       464 ~--~~~~l~s~~~  474 (635)
                      +  +|..||+++.
T Consensus       282 fs~dG~~LAia~s  294 (323)
T KOG1036|consen  282 FSMDGSLLAIASS  294 (323)
T ss_pred             eccCCCeEEEEec
Confidence            8  5778888864

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=7.3e-23  Score=198.50  Aligned_cols=225  Identities=19%  Similarity=0.308  Sum_probs=170.3

Q ss_pred             ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCC
Q psy18018        359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD  435 (635)
Q Consensus       359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d  435 (635)
                      |+..+.|++|+......+..+.+|...|.+++|+   +++|++++.|+.|++||+.++.....                 
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----------------  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----------------  112 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------
Confidence            5667899999988888888999999999999997   35788888888888888764321000                 


Q ss_pred             CcEEEEeCCCCceeeeeccCCccEEEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCC
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSR  510 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~  510 (635)
                              .....+..+.+|...|.++.|++.   ++++++.|++|++||+.+++....+.    +...|.+++|  +|.
T Consensus       113 --------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~SlswspdG~  180 (568)
T PTZ00420        113 --------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNIKGN  180 (568)
T ss_pred             --------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECCCCC
Confidence                    001234467789999999999753   56899999999999999998777665    4567999999  699


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCce-----ecccccCCCeEEEEecCCC----eEEEEeCCC
Q psy18018        511 FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL-----LCPHLQFNSRFVITSSDDG----TVKLWDVKT  581 (635)
Q Consensus       511 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d~----~v~iwd~~~  581 (635)
                      +|++++.|+.|++||+++++.+..+..           |.+.+     ....|++++.+|++++.|+    .|+|||+.+
T Consensus       181 lLat~s~D~~IrIwD~Rsg~~i~tl~g-----------H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQEIASSFHI-----------HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEec-----------ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            999999999999999999987766654           33332     2334678999999988774    799999985


Q ss_pred             -CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        582 -GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       582 -~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                       ++.+..+..   ..+.+.+......++|.++++|+.|+.  +++|.+
T Consensus       250 ~~~pl~~~~l---d~~~~~L~p~~D~~tg~l~lsGkGD~t--Ir~~e~  292 (568)
T PTZ00420        250 TTSALVTMSI---DNASAPLIPHYDESTGLIYLIGKGDGN--CRYYQH  292 (568)
T ss_pred             CCCceEEEEe---cCCccceEEeeeCCCCCEEEEEECCCe--EEEEEc
Confidence             555655421   234455555666778999999999998  555554

>KOG1332|consensus

Probab=99.93  E-value=2e-24  Score=174.24  Aligned_cols=257  Identities=22%  Similarity=0.313  Sum_probs=179.7

Q ss_pred             eeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---
Q psy18018         76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---  150 (635)
Q Consensus        76 l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---  150 (635)
                      ...|.+.| ..+..+  |++|||++.|++|||+.++...                  ..+++.+|.||.+||..++|   
T Consensus         7 dt~H~D~I-Hda~lDyygkrlATcsSD~tVkIf~v~~n~------------------~s~ll~~L~Gh~GPVwqv~wahP   67 (299)
T KOG1332|consen    7 DTQHEDMI-HDAQLDYYGKRLATCSSDGTVKIFEVRNNG------------------QSKLLAELTGHSGPVWKVAWAHP   67 (299)
T ss_pred             hhhhhhhh-hHhhhhhhcceeeeecCCccEEEEEEcCCC------------------CceeeeEecCCCCCeeEEeeccc
Confidence            35787776 666555  9999999999999999987542                  12678899999999999999   


Q ss_pred             -cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEE
Q psy18018        151 -DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS  229 (635)
Q Consensus       151 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  229 (635)
                       -|..||+++.||.|.||.-.+++-                                       ........|...|+++
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g~w---------------------------------------~k~~e~~~h~~SVNsV  108 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENGRW---------------------------------------TKAYEHAAHSASVNSV  108 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCCch---------------------------------------hhhhhhhhhcccceee
Confidence             588999999999999998766531                                       1223456788889888


Q ss_pred             EeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhc
Q psy18018        230 QMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA  309 (635)
Q Consensus       230 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (635)
                      +|...                                                                           
T Consensus       109 ~waph---------------------------------------------------------------------------  113 (299)
T KOG1332|consen  109 AWAPH---------------------------------------------------------------------------  113 (299)
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            86310                                                                           


Q ss_pred             ccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC---ceEEeeeCCCcce
Q psy18018        310 QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLT  386 (635)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~~v  386 (635)
                                                               ..|-.|++++.||.|.+++.++.   ...+....|.-.|
T Consensus       114 -----------------------------------------eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen  114 -----------------------------------------EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV  152 (299)
T ss_pred             -----------------------------------------ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence                                                     01223444444444444444322   1223456788888


Q ss_pred             eEEEEeCC----EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC--ceeeeeccCCccEE
Q psy18018        387 SGMELRNN----ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTS  460 (635)
Q Consensus       387 ~~l~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~  460 (635)
                      ++++|.+.    .++..+.-                     ..-+.|++|+.|..+++|+..++  ++..++.+|...|.
T Consensus       153 nsVswapa~~~g~~~~~~~~---------------------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPA---------------------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR  211 (299)
T ss_pred             ceeeecCcCCCccccccCcc---------------------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence            88888632    11111100                     01246889999999999988875  34456899999999


Q ss_pred             EEEecCC------EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018        461 GMELRNN------ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       461 ~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~  527 (635)
                      .+++.+.      .+++++.||++.||.........+..........+..++|  .|+.|+.++.|+.+.+|.-.
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9988543      7999999999999987632111222212225677888888  59999999999999999754

>KOG2055|consensus

Probab=99.92  E-value=1.9e-23  Score=184.27  Aligned_cols=278  Identities=14%  Similarity=0.220  Sum_probs=217.8

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCC--ceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcc
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      ...+.++.|+|....+++++.|+.+++|.++..  ..+..+.-...+|.+.+|.  +. .+++++....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            345678899999999999999999999998743  3456666667788888886  44 899999999999999987654


Q ss_pred             eeEEE------------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEE
Q psy18018        416 KLMFR------------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVW  481 (635)
Q Consensus       416 ~~~~~------------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iw  481 (635)
                      .....            -.++++++|+..+..|.|.+.-..+++.+..++ -++.|..+.|  +++.|++.+.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            33222            268999999999999999999999999988887 4567777777  57789999999999999


Q ss_pred             ECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018        482 DIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       482 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  561 (635)
                      |++...++..+.....-.+.-.|++.++.+||+|+..|.|.|||.++........+-..     ...-...|++++|+||
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~-----~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT-----VDNLTTAITSLQFNHD  446 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh-----hhhhheeeeeeeeCcc
Confidence            99999999988764434444456667999999999999999999775432111111000     1112457999999999


Q ss_pred             CeEEEEecC--CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        562 SRFVITSSD--DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       562 ~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      .++||.++.  ...+++-.+.+......+...  ...-+.|++|+|||.|-+||+|.+.|.  +.||.+
T Consensus       447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~gr--v~l~kL  511 (514)
T KOG2055|consen  447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGR--VHLFKL  511 (514)
T ss_pred             hhhhhhhhhccccceEEEeccceeeeccCCCC--CCcccceEEEEecCCCceEEeecCCCc--eeeEee
Confidence            999999874  578999999998877666432  233467999999999999999999998  677765

>KOG1445|consensus

Probab=99.92  E-value=8.1e-23  Score=187.49  Aligned_cols=148  Identities=18%  Similarity=0.309  Sum_probs=116.6

Q ss_pred             EeCCCcEEEEECCCCceeE--EecCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeE
Q psy18018        472 GNADSTVKVWDIVSGQCLQ--TLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       472 ~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  546 (635)
                      .+.-|.|-||+++....+.  .+.+ -.....|+.+.|   |...|+++++||.|++|.+..+........    ..-..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~-l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t----Pe~~l  673 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPG-LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT----PEKIL  673 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccc-cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC----cceee
Confidence            4567899999997532221  1111 114567899998   578999999999999999998765443322    22334


Q ss_pred             EeccCceecccccCC-CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEE
Q psy18018        547 LIYSQPLLCPHLQFN-SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKL  625 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l  625 (635)
                      ..|...|+++.|+|- ...|++++.|.+|++||+.+++....+     .+|.+.|..++|||||+.+|+.+.||+    |
T Consensus       674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSpdGr~~AtVcKDg~----~  744 (1012)
T KOG1445|consen  674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSPDGRRIATVCKDGT----L  744 (1012)
T ss_pred             ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECCCCcceeeeecCce----E
Confidence            568899999999994 578999999999999999999988888     689999999999999999999999998    7


Q ss_pred             EEEeeecC
Q psy18018        626 LVLDFDVD  633 (635)
Q Consensus       626 ~~~d~~~~  633 (635)
                      ++|++.+.
T Consensus       745 rVy~Prs~  752 (1012)
T KOG1445|consen  745 RVYEPRSR  752 (1012)
T ss_pred             EEeCCCCC
Confidence            77776543

>KOG1332|consensus

Probab=99.92  E-value=5.4e-23  Score=166.10  Aligned_cols=232  Identities=19%  Similarity=0.274  Sum_probs=173.2

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCC---ceEEeeeCCCcceeEEEEe----CCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      +...|++|++++.|+.|++|..+..   +++.++.+|.++|..++|-    +.+|++++.||.|.               
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI---------------   83 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI---------------   83 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE---------------
Confidence            5567899999999999999998754   4678899999999999995    44555555555554               


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCC--ceeeeeccCCccEEEEEecC----CEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELRN----NILVSGNADSTVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  495 (635)
                                        +|.-.++  ........|...|+++++.+    -.|++++.||.|.+.+.++...-..-+..
T Consensus        84 ------------------iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   84 ------------------IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             ------------------EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence                              4544444  23455678999999999854    48999999999999998765221222223


Q ss_pred             CcccccEEEEEec-----C-----------CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018        496 NKHQSAVTCLQFN-----S-----------RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       496 ~~~~~~v~~~~~~-----~-----------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                      ..|...|+++++.     |           +.|++|+.|..|+||+..+++.+....         +..|..-|..++|.
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~---------l~~H~dwVRDVAwa  216 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT---------LEGHKDWVRDVAWA  216 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh---------hhhcchhhhhhhhc
Confidence            3488889999882     2           579999999999999999874332211         23488999999999


Q ss_pred             CCC----eEEEEecCCCeEEEEeCCCC--ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        560 FNS----RFVITSSDDGTVKLWDVKTG--EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       560 ~~~----~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      |.-    .+||+++.||+|.||.....  +...++.    ......++++.||..|..|++++.|..  +.+|.=
T Consensus       217 P~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll----~~f~~~~w~vSWS~sGn~LaVs~GdNk--vtlwke  285 (299)
T KOG1332|consen  217 PSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL----EEFPDVVWRVSWSLSGNILAVSGGDNK--VTLWKE  285 (299)
T ss_pred             cccCCCceeeEEecCCCcEEEEEecCccCccccccc----ccCCcceEEEEEeccccEEEEecCCcE--EEEEEe
Confidence            964    58999999999999986522  1122221    345778999999999999999999987  455543

>KOG1963|consensus

Probab=99.91  E-value=6.7e-21  Score=182.40  Aligned_cols=277  Identities=18%  Similarity=0.226  Sum_probs=195.3

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccC----CceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL  417 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~----~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~  417 (635)
                      ..+.+++|+++++++|..||.|.+|.-..    ......+.-|...|.+++|+  +.+|++|+..+.+.+|.+.+++...
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            57788999999999999999999998543    12345677899999999997  7899999999999999999987443


Q ss_pred             E--------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-----------CccEEEEEecC--CEEEEEeCCC
Q psy18018        418 M--------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-----------QSLTSGMELRN--NILVSGNADS  476 (635)
Q Consensus       418 ~--------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------~~~v~~~~~~~--~~l~s~~~dg  476 (635)
                      .        ...++||+.+.+....|+.|.+....+.....++.+-           .+-.+.+++++  +.++-.+..|
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g  367 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG  367 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence            3        3347899999999999999999998776655544432           22344455554  5788889999


Q ss_pred             cEEEEECCCCceeEEecCC--C------cccccEEEEEe--cCCEEEEEeC--------C--CcEEEEECCCCceeeeec
Q psy18018        477 TVKVWDIVSGQCLQTLSGR--N------KHQSAVTCLQF--NSRFVITSSD--------D--GTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       477 ~i~iwd~~~~~~~~~~~~~--~------~~~~~v~~~~~--~~~~l~~~~~--------d--~~i~vwd~~~~~~~~~~~  536 (635)
                      .|.+||+.+.+.+..+...  +      .+...+++++.  .|.+++|.-.        |  -.+++|-.........+.
T Consensus       368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~  447 (792)
T KOG1963|consen  368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN  447 (792)
T ss_pred             eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence            9999999888777665431  1      12334555555  4888888742        2  347778766554322222


Q ss_pred             cceecCceeEEeccCceecccccCC-Ce-EEEEecCCCeEEEEeCCCCce------EEeeeeccCCCCCceEEEEEeCCC
Q psy18018        537 SSFILNPFYFLIYSQPLLCPHLQFN-SR-FVITSSDDGTVKLWDVKTGEF------IRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~-~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                            .....+|...+...+|.+. .. ..++++.||.++||-+.+.+.      ......+. .-|..++++++|+.|
T Consensus       448 ------T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-sy~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  448 ------TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-SYHKTPITALCFSQD  520 (792)
T ss_pred             ------EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-ccccCcccchhhcCC
Confidence                  2223346666665555542 23 789999999999998843322      22222221 247889999999999


Q ss_pred             CeEEEEccCCCeeEeEEEEEeeec
Q psy18018        609 KLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |..|+++.+|.     |-.||++.
T Consensus       521 Gslla~s~~~~-----Itiwd~~~  539 (792)
T KOG1963|consen  521 GSLLAVSFDDT-----ITIWDYDT  539 (792)
T ss_pred             CcEEEEecCCE-----EEEecCCC
Confidence            98888777765     55555544

>KOG2096|consensus

Probab=99.91  E-value=7.1e-22  Score=166.01  Aligned_cols=297  Identities=19%  Similarity=0.222  Sum_probs=198.0

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCC--ceee--ccCcceEEEEEEc---C
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDP--KVLK--GHDDHVITCLQFS---G   91 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~--~~l~--~h~~~vi~~~~~s---~   91 (635)
                      ..|+||.+.| +||+||    .||++||+++.++.+        ++|++..+...  +.++  -.-+.. +.++|+   .
T Consensus        80 ~~LKgH~~~v-t~~~Fs----SdGK~lat~~~Dr~I--------r~w~~~DF~~~eHr~~R~nve~dhp-T~V~FapDc~  145 (420)
T KOG2096|consen   80 SVLKGHKKEV-TDVAFS----SDGKKLATISGDRSI--------RLWDVRDFENKEHRCIRQNVEYDHP-TRVVFAPDCK  145 (420)
T ss_pred             hhhhccCCce-eeeEEc----CCCceeEEEeCCceE--------EEEecchhhhhhhhHhhccccCCCc-eEEEECCCcc
Confidence            5799999999 999999    999999999976554        46999876432  1111  111223 567777   5


Q ss_pred             CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeC
Q psy18018         92 SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus        92 ~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~  169 (635)
                      ..++++-...++++|.....+.    |+..-...-||-.     ..-+.|+-.|..+-.  .+.+|++++.|..|.+|++
T Consensus       146 s~vv~~~~g~~l~vyk~~K~~d----G~~~~~~v~~D~~-----~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l  216 (420)
T KOG2096|consen  146 SVVVSVKRGNKLCVYKLVKKTD----GSGSHHFVHIDNL-----EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL  216 (420)
T ss_pred             eEEEEEccCCEEEEEEeeeccc----CCCCccccccccc-----ccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence            6677777777788887654331    1111122223310     111246667777666  7889999999999999999


Q ss_pred             CCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECC---C-----CeEEEEEeCCCCCeEEEEee--CCEEEE
Q psy18018        170 DTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSAT---T-----GKCLRTLIGHTGGVWSSQMA--GNIIIS  238 (635)
Q Consensus       170 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~-----~~~~~~~~~h~~~v~~~~~~--~~~l~s  238 (635)
                      . |+.+........ ...+...|.+..+++++..-.|++|.+-   .     -..+..++||...|..++|+  ...++|
T Consensus       217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt  295 (420)
T KOG2096|consen  217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT  295 (420)
T ss_pred             C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence            9 777766555433 4445556777888889999999999852   2     23456789999999999995  779999


Q ss_pred             eeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEe
Q psy18018        239 GSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFL  318 (635)
Q Consensus       239 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (635)
                      .+.||++++||.+-+-..-                                           ++..++..          
T Consensus       296 vSkDG~wriwdtdVrY~~~-------------------------------------------qDpk~Lk~----------  322 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDVRYEAG-------------------------------------------QDPKILKE----------  322 (420)
T ss_pred             EecCCcEEEeeccceEecC-------------------------------------------CCchHhhc----------
Confidence            9999999999976431100                                           00001100          


Q ss_pred             ecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee-eCCCcceeEEEEe--CCE
Q psy18018        319 AEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NNI  395 (635)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~~v~~l~~~--~~~  395 (635)
                                    ........+..+.-++++|+|+.|+.+.. ..+++|..++++...++ +.|...|.+++|+  +.+
T Consensus       323 --------------g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  323 --------------GSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY  387 (420)
T ss_pred             --------------CCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence                          00011112223335779999998887664 47999999988876655 4588999999997  445


Q ss_pred             EEEEeCCCcEEEE
Q psy18018        396 LVSGNADSTVKVW  408 (635)
Q Consensus       396 l~s~~~dg~i~iw  408 (635)
                      +++++ |..++++
T Consensus       388 ~atcG-dr~vrv~  399 (420)
T KOG2096|consen  388 IATCG-DRYVRVI  399 (420)
T ss_pred             Eeeec-ceeeeee
Confidence            55554 3444443

>KOG2445|consensus

Probab=99.91  E-value=2.4e-21  Score=162.16  Aligned_cols=277  Identities=19%  Similarity=0.290  Sum_probs=187.8

Q ss_pred             eccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe----
Q psy18018         77 KGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY----  150 (635)
Q Consensus        77 ~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~----  150 (635)
                      .+|.+-+ .|+.|+  |+++|||+.|++|+|||..+..                 .+..+....+.|.+.|..+.|    
T Consensus        10 s~h~Dli-hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-----------------~~W~~Ts~Wrah~~Si~rV~WAhPE   71 (361)
T KOG2445|consen   10 SGHKDLI-HDVSFDFYGRRMATCSSDQTVKIWDSTSDS-----------------GTWSCTSSWRAHDGSIWRVVWAHPE   71 (361)
T ss_pred             cCCccee-eeeeecccCceeeeccCCCcEEEEeccCCC-----------------CceEEeeeEEecCCcEEEEEecCcc
Confidence            4788765 999999  9999999999999999975432                 345677888999999999999    


Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ  230 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  230 (635)
                      -|+.+|+++.|+++.||.-....                           .+..=+     ......++......|+.+.
T Consensus        72 fGqvvA~cS~Drtv~iWEE~~~~---------------------------~~~~~~-----~Wv~~ttl~DsrssV~DV~  119 (361)
T KOG2445|consen   72 FGQVVATCSYDRTVSIWEEQEKS---------------------------EEAHGR-----RWVRRTTLVDSRSSVTDVK  119 (361)
T ss_pred             ccceEEEEecCCceeeeeecccc---------------------------cccccc-----eeEEEEEeecCCcceeEEE
Confidence            69999999999999999754111                           011111     1234456777788899999


Q ss_pred             ee----CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        231 MA----GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       231 ~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      |.    |-.+++++.||.+|+|+..+........+..                                           
T Consensus       120 FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~-------------------------------------------  156 (361)
T KOG2445|consen  120 FAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH-------------------------------------------  156 (361)
T ss_pred             ecchhcceEEEEeccCcEEEEEecCCccccccchhhh-------------------------------------------
Confidence            94    6789999999999999865432111000000                                           


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhc--cccccCCCceEEEEe---cCcEEEEecCC-----CeEEEEEccCCc--
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLH--RNKKTHVPDLFGFQF---DGVHVVSGSLD-----TSIRVWEAESGN--  374 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~---~~~~l~~~~~d-----g~i~v~~~~~~~--  374 (635)
                                              +...+.  .........++.++|   ....|++|+.+     +.+.||....+.  
T Consensus       157 ------------------------Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK  212 (361)
T KOG2445|consen  157 ------------------------EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK  212 (361)
T ss_pred             ------------------------hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence                                    000000  011112233444554   34567888766     578888876443  


Q ss_pred             --eEEeeeCCCcceeEEEEeCC------EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC
Q psy18018        375 --LRHTLMGHQSLTSGMELRNN------ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG  446 (635)
Q Consensus       375 --~~~~~~~~~~~v~~l~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  446 (635)
                        .+.++.+|..+|.+++|.++      .|++++.|| |+||++..........-       +.+...-.     ++ .-
T Consensus       213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee-------~~~~~~~~-----~l-~v  278 (361)
T KOG2445|consen  213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE-------VLAPDLMT-----DL-PV  278 (361)
T ss_pred             eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc-------ccCCCCcc-----cc-ce
Confidence              45677899999999999743      799999999 99999875322110000       00000000     11 12


Q ss_pred             ceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECC
Q psy18018        447 NLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  484 (635)
Q Consensus       447 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  484 (635)
                      +.+..+.+|++.|..+.|+  |..|++.+.||.|++|...
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            4566788999999999985  8899999999999999754

>KOG1274|consensus

Probab=99.91  E-value=7.3e-22  Score=189.36  Aligned_cols=261  Identities=22%  Similarity=0.292  Sum_probs=213.9

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCC-ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE--
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM--  418 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--  418 (635)
                      .....+++.|+|.++++++.||.|++|+..+. +....+..+...|.+++.....|++++.+++|..|.+.+++....  
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~   93 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA   93 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceee
Confidence            34566889999999999999999999998765 444444447889999999999999999999999999988765422  


Q ss_pred             -------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCcee
Q psy18018        419 -------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       419 -------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                             ...++.+|++++.|+.|-.|++.+..+......+.+|..+|.++.++  +++||+.+-||.|++||+.++.+.
T Consensus        94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~  173 (933)
T KOG1274|consen   94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS  173 (933)
T ss_pred             eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence                   22467789999999999999999999999999999999999999996  459999999999999999999887


Q ss_pred             EEecCCCcc-----cccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018        490 QTLSGRNKH-----QSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS  562 (635)
Q Consensus       490 ~~~~~~~~~-----~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  562 (635)
                      ..+.+..+.     ...+..++|  ++..++..+.|+.|++|+....+....+...         .+...+..++|||+|
T Consensus       174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~---------~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  174 KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK---------LSSSKFSDLQWSPNG  244 (933)
T ss_pred             hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc---------ccccceEEEEEcCCC
Confidence            777653322     334566777  4667777888999999999998877666543         234458999999999


Q ss_pred             eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        563 RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       563 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      +|||+++.||.|.|||.++.+.         ......|.+++|-|++..+-.-...|+
T Consensus       245 ~YiAAs~~~g~I~vWnv~t~~~---------~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDTHER---------HEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             cEEeeeccCCcEEEEecccchh---------ccccceeEEEecCCCCCeeEEEeeccc
Confidence            9999999999999999998332         123567999999999987776666554

>KOG4283|consensus

Probab=99.91  E-value=8.2e-22  Score=163.80  Aligned_cols=267  Identities=22%  Similarity=0.417  Sum_probs=201.1

Q ss_pred             CCCceEEEEe-cCcEEEEecCCCeEEEEEccCCce------E----E-----eeeCCCcceeEEEEe---CCEEEEEeCC
Q psy18018        342 HVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL------R----H-----TLMGHQSLTSGMELR---NNILVSGNAD  402 (635)
Q Consensus       342 ~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~------~----~-----~~~~~~~~v~~l~~~---~~~l~s~~~d  402 (635)
                      .....+.+.+ .|+++++|+.||.|.+||++....      +    .     .-.+|.-.|..+.|-   ..++.+++-|
T Consensus        44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD  123 (397)
T KOG4283|consen   44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD  123 (397)
T ss_pred             CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence            4444555665 789999999999999999975431      1    1     123566688888774   6789999999


Q ss_pred             CcEEEEEccCCcceeEEEE--------Eee---CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC---E
Q psy18018        403 STVKVWDIVSGTKKLMFRI--------CLF---DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---I  468 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~~--------~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~  468 (635)
                      .++++||.++.+....+..        .+|   ..-.+++|..+-.|++-|+.+|...+++.||...|.++.|++.   .
T Consensus       124 htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~v  203 (397)
T KOG4283|consen  124 HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWV  203 (397)
T ss_pred             ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeE
Confidence            9999999999877766653        222   3346788889999999999999999999999999999999765   7


Q ss_pred             EEEEeCCCcEEEEECCCC-ceeEEec-----------CCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018        469 LVSGNADSTVKVWDIVSG-QCLQTLS-----------GRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       469 l~s~~~dg~i~iwd~~~~-~~~~~~~-----------~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~  534 (635)
                      |++|+.||.|++||++.. .+...+.           ....|.+.+..++|  ++.++++.+.|..+++|+..+|+....
T Consensus       204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence            999999999999999754 2333322           23357888999999  799999999999999999998864332


Q ss_pred             eccceecCc-eeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEE
Q psy18018        535 LMSSFILNP-FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCA  613 (635)
Q Consensus       535 ~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~  613 (635)
                      .......+. .....|   +.    +.+...++---.++.+.++.+-+|+.++.+     ..|...|.+.++.|+=+.+.
T Consensus       284 ~~g~~~~n~~~~~~~~---~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l-----~~h~k~i~c~~~~~~fq~~~  351 (397)
T KOG4283|consen  284 EFGPIIHNQTTSFAVH---IQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-----STHLKRINCAAYRPDFEQCF  351 (397)
T ss_pred             ccccccccccccceEE---Ee----ecccceEEEEecCCeEEEEEccCceEEEee-----ecccceeeEEeecCchhhhh
Confidence            221111110 000001   22    224444444445688999999999999998     57888999999999999999


Q ss_pred             EccCCCe
Q psy18018        614 VGSRNGT  620 (635)
Q Consensus       614 ~~~~dg~  620 (635)
                      ++..|+.
T Consensus       352 tg~~d~n  358 (397)
T KOG4283|consen  352 TGDMNGN  358 (397)
T ss_pred             ccccCCc
Confidence            9999998

>KOG0639|consensus

Probab=99.91  E-value=1e-22  Score=181.59  Aligned_cols=227  Identities=17%  Similarity=0.296  Sum_probs=185.5

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ....+.+.+.|||+.|++|++-.++.|||+....+..  ++.......++++.                           
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~---------------------------  517 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---------------------------  517 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc---------------------------
Confidence            3444556689999999999999999999998655432  22222223333333                           


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  496 (635)
                          +||.+..+++..||.|.+||+.+..++..+++|...+.|+.++  |..|.+|+-|++|+.||+++++.+....   
T Consensus       518 ----spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---  590 (705)
T KOG0639|consen  518 ----SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---  590 (705)
T ss_pred             ----CCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh---
Confidence                4677778888889999999999999999999999999999885  8899999999999999999988776654   


Q ss_pred             cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                       ..+.|.++.+  .+.+++.|=.++.+.|-.....+.. .           ...|..-|.++.|++.|+++++.+.|+.+
T Consensus       591 -F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-q-----------lhlheScVLSlKFa~cGkwfvStGkDnlL  657 (705)
T KOG0639|consen  591 -FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-Q-----------LHLHESCVLSLKFAYCGKWFVSTGKDNLL  657 (705)
T ss_pred             -hhhhheecccCCCccceeeecccCcEEEEecCCccce-e-----------ecccccEEEEEEecccCceeeecCchhhh
Confidence             5677877777  6999999999999988876654321 1           12378889999999999999999999999


Q ss_pred             EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ..|...-|..+.+.      ...++|.+...|-|.+|+++|+.|+.
T Consensus       658 nawrtPyGasiFqs------kE~SsVlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  658 NAWRTPYGASIFQS------KESSSVLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             hhccCccccceeec------cccCcceeeeeccCceEEEecCCCcc
Confidence            99999999988777      45788999999999999999999976

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.9e-20  Score=175.25  Aligned_cols=286  Identities=19%  Similarity=0.196  Sum_probs=183.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEE-EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEE
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI-VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ  230 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  230 (635)
                      +..+++++.|+.+++||+.+++.+..+..+.........+++..+ ++++.++.|++||..+++.+..+..+..      
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD------   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC------
Confidence            356788899999999999888877666544443333444455555 4566788888998877766554432211      


Q ss_pred             eeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        231 MAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       231 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                                                                                                      
T Consensus        75 --------------------------------------------------------------------------------   74 (300)
T TIGR03866        75 --------------------------------------------------------------------------------   74 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEe-cCCCeEEEEEccCCceEEeeeCCCcceeEE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGM  389 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l  389 (635)
                                                       ...++++|+++.++++ ..++.+++||+.+++.+..+..+ ..+.++
T Consensus        75 ---------------------------------~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~  120 (300)
T TIGR03866        75 ---------------------------------PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGM  120 (300)
T ss_pred             ---------------------------------ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceE
Confidence                                             1123467777766544 45788999998877666555422 123334


Q ss_pred             EEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCC-cEEEEeCCCCceeeeeccCCccEEEEE--ecC
Q psy18018        390 ELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDT-SIRVWEAESGNLRHTLMGHQSLTSGME--LRN  466 (635)
Q Consensus       390 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~  466 (635)
                      ++                               +|+++.++++..++ .+..||..+++....+.... ....+.  .++
T Consensus       121 ~~-------------------------------~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg  168 (300)
T TIGR03866       121 AV-------------------------------SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-RPRFAEFTADG  168 (300)
T ss_pred             EE-------------------------------CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-CccEEEECCCC
Confidence            43                               35555555555543 35556776665544332221 223344  466


Q ss_pred             CEEE-EEeCCCcEEEEECCCCceeEEecCCC--cc--cccEEEEEe--cCCEEEE-EeCCCcEEEEECCCCceeeeeccc
Q psy18018        467 NILV-SGNADSTVKVWDIVSGQCLQTLSGRN--KH--QSAVTCLQF--NSRFVIT-SSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       467 ~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~--~~--~~~v~~~~~--~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      +.++ ++..++.|++||+.+++.+..+....  .+  ......+++  +++++++ .+.++.+.+||+++++......  
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--  246 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--  246 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--
Confidence            7665 44569999999999988777654211  01  111234555  6777544 4556789999999887654332  


Q ss_pred             eecCceeEEeccCceecccccCCCeEEEEe-cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        539 FILNPFYFLIYSQPLLCPHLQFNSRFVITS-SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                                +...+.+++|+|++++|+++ +.++.|++||+.+++.+..+.      .....+.++|+|
T Consensus       247 ----------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~  300 (300)
T TIGR03866       247 ----------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK------VGRLPWGVVVRP  300 (300)
T ss_pred             ----------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE------cccccceeEeCC
Confidence                      24568899999999999886 568999999999999999884      234558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1538|consensus

Probab=99.90  E-value=5.8e-21  Score=176.51  Aligned_cols=450  Identities=15%  Similarity=0.208  Sum_probs=294.4

Q ss_pred             EEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEE
Q psy18018         29 ITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVW  106 (635)
Q Consensus        29 i~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vW  106 (635)
                      |.-+||-    |||.-|..+-.++         +.+||+..|.++.+|+||.+.| .|+||+  |+++|||+.|..|.+|
T Consensus        15 i~d~afk----PDGsqL~lAAg~r---------lliyD~ndG~llqtLKgHKDtV-ycVAys~dGkrFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   15 INDIAFK----PDGTQLILAAGSR---------LLVYDTSDGTLLQPLKGHKDTV-YCVAYAKDGKRFASGSADKSVIIW   80 (1081)
T ss_pred             hheeEEC----CCCceEEEecCCE---------EEEEeCCCcccccccccccceE-EEEEEccCCceeccCCCceeEEEe
Confidence            3899999    8888777765443         3469999999999999999998 999999  9999999999999999


Q ss_pred             ECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee-CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce
Q psy18018        107 SATTGKCLLVSGSRDATLRVWHIESGECLHVLV-GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE  183 (635)
Q Consensus       107 d~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~-~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  183 (635)
                      +.+-                        ...++ .|...|.|+.|  -.+.|+|++.. ..-+|..+.... ........
T Consensus        81 ~~kl------------------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R  134 (1081)
T KOG1538|consen   81 TSKL------------------------EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSR  134 (1081)
T ss_pred             cccc------------------------cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhhhhee
Confidence            8542                        12222 69999999999  46788888753 456787655432 22333344


Q ss_pred             eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE---eCCCCCeEEEEee-------CCEEEEeeCceeEEEecccce
Q psy18018        184 VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL---IGHTGGVWSSQMA-------GNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~-------~~~l~s~~~dg~i~~w~~~~~  253 (635)
                      +..+....++.+++.|-.+|+|.+-+-. ++....+   .|...+|++++|+       .+.++......++.++.++..
T Consensus       135 ~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  135 IICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             EEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence            5555556778899999999999998743 4433333   3577899999994       347777787888888876654


Q ss_pred             eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018        254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA  333 (635)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (635)
                      ....                                                                            
T Consensus       214 ~Igk----------------------------------------------------------------------------  217 (1081)
T KOG1538|consen  214 QIGK----------------------------------------------------------------------------  217 (1081)
T ss_pred             eecc----------------------------------------------------------------------------
Confidence            3211                                                                            


Q ss_pred             hhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEcc
Q psy18018        334 TLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       334 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~  411 (635)
                         .......+.++.+-++|.+++.|+.|+.+.+|. +.|-.+.++......|..++..  ++.++.|..||++..|++.
T Consensus       218 ---~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  218 ---DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ---cccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence               011223445667888999999999999999986 4577777777777888888875  6799999999999999875


Q ss_pred             CCccee------------------------EEEE--------EeeCCcEEEEEeCCCcEEEEeCCCCceeee-eccCCc-
Q psy18018        412 SGTKKL------------------------MFRI--------CLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQS-  457 (635)
Q Consensus       412 ~~~~~~------------------------~~~~--------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~-  457 (635)
                      ....-.                        ...+        .+--.+.|++-- ...|.+|.+.+++.... +.-.+. 
T Consensus       294 fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQL-peki~iYel~se~~~~mhY~v~ekI  372 (1081)
T KOG1538|consen  294 FSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQL-PEKILIYELYSEDLSDMHYRVKEKI  372 (1081)
T ss_pred             HhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecc-cceEEEEeccccccccchhHHHHHH
Confidence            431100                        0001        011123344433 33477777765533211 110011 


Q ss_pred             ----cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-----cCCEEEEEeCCCcEEEEECCC
Q psy18018        458 ----LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-----NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       458 ----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~d~~i~vwd~~~  528 (635)
                          ...-+...++.++. +.+..+..+|...- ..++..    ..+-|.-+..     ...-|+.|-.||.|.-.=+.+
T Consensus       373 ~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gv-k~ReW~----M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN  446 (1081)
T KOG1538|consen  373 IKKFECSLLVVCANHIVL-CQEKRLQCLDFSGV-KEREWQ----MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDN  446 (1081)
T ss_pred             HhhccceEEEEEcCeEEE-Ecccceeeecccch-hhhhhh----HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecC
Confidence                11112223444333 35677888887532 112221    1222222222     234577777777654322332


Q ss_pred             CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      .-            |+........|.|+.++...+.||+..+.++..++|+.+++.+.+-         ..+.+++|...
T Consensus       447 ~~------------PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE---------pg~nSV~wNT~  505 (1081)
T KOG1538|consen  447 LF------------PILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE---------PGANSVAWNTQ  505 (1081)
T ss_pred             Cc------------hhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec---------CCCceEEeecc
Confidence            21            1112223567999999999999999999999999999999987655         23678888876


Q ss_pred             CeEEEEccCCCeeEeEEEE
Q psy18018        609 KLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~l~~  627 (635)
                      .+-+.+-+..|...|+.-.
T Consensus       506 ~E~MlcfT~~g~L~VR~~~  524 (1081)
T KOG1538|consen  506 CEDMLCFTGGGYLNVRAST  524 (1081)
T ss_pred             ccceEEEecCCceEEEecc
Confidence            6655544445665565543

>KOG0264|consensus

Probab=99.90  E-value=3.3e-22  Score=176.56  Aligned_cols=237  Identities=19%  Similarity=0.320  Sum_probs=174.2

Q ss_pred             EEe-cCcEEEEecCCCeEEEEEccCCc----------eEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCc
Q psy18018        349 FQF-DGVHVVSGSLDTSIRVWEAESGN----------LRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       349 ~s~-~~~~l~~~~~dg~i~v~~~~~~~----------~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~  414 (635)
                      ..| +...+++++..+.+.|||.....          +-..+.+|...-.+++|+   ...|++++.|+.+++||+....
T Consensus       132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~  211 (422)
T KOG0264|consen  132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES  211 (422)
T ss_pred             hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence            444 55677888899999999976432          112567777766777776   4466777777777777665321


Q ss_pred             ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEECCC--Ccee
Q psy18018        415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVS--GQCL  489 (635)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~--~~~~  489 (635)
                      ..                  +        ..-.+...+.+|...|..++|+   .++++++++|+.+.|||.++  .++.
T Consensus       212 ~~------------------~--------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  212 KE------------------D--------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cC------------------C--------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence            10                  0        1123456788999999999984   56999999999999999995  4444


Q ss_pred             EEecCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEE
Q psy18018        490 QTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFV  565 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l  565 (635)
                      .....   |...+.|++|   ++..||+||.|++|++||+++...          .......|...|.++.|||+. ..|
T Consensus       266 ~~~~a---h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----------~lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  266 HSVKA---HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----------PLHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             ccccc---cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------CceeccCCCcceEEEEeCCCCCcee
Confidence            44444   9999999999   488999999999999999997653          222344589999999999975 588


Q ss_pred             EEecCCCeEEEEeCCCCceEEe-----------eeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEE
Q psy18018        566 ITSSDDGTVKLWDVKTGEFIRN-----------LVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~~~~~-----------~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~  628 (635)
                      |+++.|+.+.|||+..-...+.           +..  -++|...|..+.|+|... .+++.++|+.  ..||..
T Consensus       333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~--HgGH~~kV~DfsWnp~ePW~I~SvaeDN~--LqIW~~  403 (422)
T KOG0264|consen  333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI--HGGHTAKVSDFSWNPNEPWTIASVAEDNI--LQIWQM  403 (422)
T ss_pred             EecccCCcEEEEeccccccccChhhhccCCcceeEE--ecCcccccccccCCCCCCeEEEEecCCce--EEEeec
Confidence            9999999999999975222111           111  168999999999999887 6777888877  555543

>KOG0267|consensus

Probab=99.89  E-value=2.7e-23  Score=193.55  Aligned_cols=221  Identities=24%  Similarity=0.436  Sum_probs=193.3

Q ss_pred             EecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       350 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      -..++.+++|+.+..+-+|.......+..+.+|..+|.++.|+                               ++...|
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-------------------------------~~E~Ll   85 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-------------------------------TSERLL   85 (825)
T ss_pred             eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-------------------------------cchhhh
Confidence            3456789999999999999988877788899999999999987                               233345


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      ++|..+|+|++||++..+.++++.+|...+..+.|++  .+.++|+.|..+++||.+...+...+.+   |...+.++.|
T Consensus        86 aagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~vv~~l~l  162 (825)
T KOG0267|consen   86 AAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRVVDVLRL  162 (825)
T ss_pred             cccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---CcceeEEEee
Confidence            6666777788888888899999999999999999874  5889999999999999998888998887   8888888777


Q ss_pred             --cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        508 --NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       508 --~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                        +|++++.+++|..+++||+..|++...+..           |...+.++.|+|..-++++|+.|++|++||+++.+.+
T Consensus       163 sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-----------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I  231 (825)
T KOG0267|consen  163 SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-----------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI  231 (825)
T ss_pred             cCCCceeeccCCcceeeeeccccccccccccc-----------ccccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence              799999999999999999999999888876           6889999999999999999999999999999999999


Q ss_pred             EeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        586 RNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       586 ~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ...     .+....|.+++|+|+++.+++|.....
T Consensus       232 ~s~-----~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  232 SSG-----KPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             ecc-----CCccCCceeeeecCCceeeecCchhhh
Confidence            888     456788999999999999999887653

>KOG0264|consensus

Probab=99.89  E-value=1.2e-21  Score=173.08  Aligned_cols=204  Identities=21%  Similarity=0.312  Sum_probs=156.9

Q ss_pred             cccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC----------CCceeeccCcceEEEEEEc-
Q psy18018         22 KGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK----------DPKVLKGHDDHVITCLQFS-   90 (635)
Q Consensus        22 ~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~----------~~~~l~~h~~~vi~~~~~s-   90 (635)
                      .-|.+.| ..+.+-|   .+...+|+..+.        +.+.|||.....          +-.+|.||++.- .+++|+ 
T Consensus       121 i~h~gEV-nRaRymP---Qnp~iVAt~t~~--------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg-~glsWn~  187 (422)
T KOG0264|consen  121 INHDGEV-NRARYMP---QNPNIVATKTSS--------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG-YGLSWNR  187 (422)
T ss_pred             ccCCccc-hhhhhCC---CCCcEEEecCCC--------CCEEEEEeccCCCcccccccCCCceEEEeecccc-ccccccc
Confidence            3577777 7777774   455666666654        344469875432          222789999977 789999 


Q ss_pred             --CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEE
Q psy18018         91 --GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVK  165 (635)
Q Consensus        91 --~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~  165 (635)
                        .-+|++++.|++|++||+.....       +       -..-.+...+.+|...|..++|   +...+++++.|+.+.
T Consensus       188 ~~~g~Lls~~~d~~i~lwdi~~~~~-------~-------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~  253 (422)
T KOG0264|consen  188 QQEGTLLSGSDDHTICLWDINAESK-------E-------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM  253 (422)
T ss_pred             ccceeEeeccCCCcEEEEecccccc-------C-------CccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence              66899999999999999974431       0       0112456678899999999999   889999999999999


Q ss_pred             EEeCCC--ccceeeccccceeEEeeeccC--CCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEee---CCEEE
Q psy18018        166 IWNPDT--EECLHAELQETEVELSHGYAL--RSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA---GNIII  237 (635)
Q Consensus       166 iwd~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~---~~~l~  237 (635)
                      |||+++  .+.......+.....++.|.+  +..|++|+.|++|++||+++ .+++.++.+|...|..+.|+   ...|+
T Consensus       254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA  333 (422)
T ss_pred             EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence            999994  445555555555555555544  56788999999999999987 56788999999999999996   56899


Q ss_pred             EeeCceeEEEecccc
Q psy18018        238 SGSTDRTLKGWSNAE  252 (635)
Q Consensus       238 s~~~dg~i~~w~~~~  252 (635)
                      +.+.|+.+.+||+..
T Consensus       334 SSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSR  348 (422)
T ss_pred             ecccCCcEEEEeccc
Confidence            999999999999865

>KOG0321|consensus

Probab=99.89  E-value=2.7e-21  Score=177.80  Aligned_cols=288  Identities=19%  Similarity=0.269  Sum_probs=193.3

Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccc------eeeccccceeEEeeeccC-CCEEEEEeCCCcEEEEECCCCeEEEE--EeC
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEEC------LHAELQETEVELSHGYAL-RSRIVSGSDDNTLKVWSATTGKCLRT--LIG  221 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~  221 (635)
                      ..+.|+.+.+||.|.++|......      +.....|...++...+.+ ..+|++++.|.+++.||+.+++++..  +.|
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            356889999999999998765432      244455555555555544 56899999999999999999998876  889


Q ss_pred             CCCCeEEEEe---eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018        222 HTGGVWSSQM---AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT  298 (635)
Q Consensus       222 h~~~v~~~~~---~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (635)
                      |.+.|.+++|   +...|++|+.||.|.+||++.......+.....  ....+.... .+.                   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~--~~~~~n~~p-tps-------------------  200 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR--IYGRHNTAP-TPS-------------------  200 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh--hhccccCCC-CCC-------------------
Confidence            9999999999   588999999999999999886542211111100  000000000 000                   


Q ss_pred             ecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC-CCeEEEEEccCCceEE
Q psy18018        299 FLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL-DTSIRVWEAESGNLRH  377 (635)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~  377 (635)
                           +.+  ....+.|..                  ........++ +-+..|...||+++. |+.|++||++......
T Consensus       201 -----kp~--~kr~~k~kA------------------~s~ti~ssvT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  201 -----KPL--KKRIRKWKA------------------ASNTIFSSVT-VVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             -----chh--hcccccccc------------------ccCceeeeeE-EEEEeccceeeeccCCCcceEEEeeccccccc
Confidence                 000  000000000                  0000000111 224558888998887 9999999998654322


Q ss_pred             --------eeeCC---CcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee-------------EEEEEeeCCcEEEE
Q psy18018        378 --------TLMGH---QSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL-------------MFRICLFDGVHVVS  431 (635)
Q Consensus       378 --------~~~~~---~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~l~~  431 (635)
                              .+.-|   .-.+.++..+  +.+|++.+.|+.|.+|++.+.....             .....+|++.++++
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence                    22223   2255666665  6788888889999999997653222             22347899999999


Q ss_pred             EeCCCcEEEEeCCCCce-eeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCC
Q psy18018        432 GSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~  486 (635)
                      |+.|...++|.+.+.+. ...+.+|...|+++.|.+   .-++++++|..+++|++..+
T Consensus       335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999988654 566789999999999953   36777799999999998654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.9e-19  Score=169.64  Aligned_cols=267  Identities=18%  Similarity=0.169  Sum_probs=165.9

Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEE-EEEeCCCeEEEEeCCCccceeeccccceeEEeeecc
Q psy18018        115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLV-VSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA  191 (635)
Q Consensus       115 l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (635)
                      +++++.|+.+++||+++++.+..+..|.. +.+++|  +++.+ ++++.++.|++||..+++....+..+.........+
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   82 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP   82 (300)
T ss_pred             EEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC
Confidence            44555555666666666677777776554 567888  77766 667789999999999988766554443333444445


Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCcccee
Q psy18018        192 LRSRIVSG-SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR  270 (635)
Q Consensus       192 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  270 (635)
                      +++.++++ ..++.+++||+.+++.+..+..+.                                               
T Consensus        83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----------------------------------------------  115 (300)
T TIGR03866        83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGV-----------------------------------------------  115 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC-----------------------------------------------
Confidence            55656544 457788888887665554443110                                               


Q ss_pred             eeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE
Q psy18018        271 HMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ  350 (635)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  350 (635)
                                                                                              ....++++
T Consensus       116 ------------------------------------------------------------------------~~~~~~~~  123 (300)
T TIGR03866       116 ------------------------------------------------------------------------EPEGMAVS  123 (300)
T ss_pred             ------------------------------------------------------------------------CcceEEEC
Confidence                                                                                    01124477


Q ss_pred             ecCcEEEEecCCC-eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        351 FDGVHVVSGSLDT-SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       351 ~~~~~l~~~~~dg-~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      |++.+++++..++ .+..||..+++........ .....+++                               +++++++
T Consensus       124 ~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~-------------------------------s~dg~~l  171 (300)
T TIGR03866       124 PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEF-------------------------------TADGKEL  171 (300)
T ss_pred             CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEE-------------------------------CCCCCEE
Confidence            8888888777664 4666787766554433221 12223333                               3455555


Q ss_pred             EEE-eCCCcEEEEeCCCCceeeeeccCC-----c--cEEEEE--ecCCEE-EEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        430 VSG-SLDTSIRVWEAESGNLRHTLMGHQ-----S--LTSGME--LRNNIL-VSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       430 ~~~-~~d~~i~~~d~~~~~~~~~~~~~~-----~--~v~~~~--~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                      +++ ..++.+++||+++++....+..+.     .  ....+.  .+++++ ++.+.++.+.+||+.+++....+.    +
T Consensus       172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~  247 (300)
T TIGR03866       172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----V  247 (300)
T ss_pred             EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----e
Confidence            333 346666666666665554443211     1  112333  456664 444566789999999888776654    3


Q ss_pred             cccEEEEEe--cCCEEEEE-eCCCcEEEEECCCCceeeeecc
Q psy18018        499 QSAVTCLQF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       499 ~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      ...+.+++|  ++++|+++ +.++.|++||+++++.+..+..
T Consensus       248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            345777888  68888876 4689999999999998777754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639|consensus

Probab=99.88  E-value=3.8e-21  Score=171.64  Aligned_cols=217  Identities=18%  Similarity=0.309  Sum_probs=175.1

Q ss_pred             ccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC---CCCceeecc-CcceEEEEEEc--CCEE
Q psy18018         21 LKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI---KDPKVLKGH-DDHVITCLQFS--GSRI   94 (635)
Q Consensus        21 l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~---~~~~~l~~h-~~~vi~~~~~s--~~~l   94 (635)
                      -..|.+-| +++++|    ..-+.+-+|+         +..+.|||+...   .++..|.-- .+.-++++...  |+.|
T Consensus       415 tL~HGEvV-cAvtIS----~~trhVyTgG---------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtL  480 (705)
T KOG0639|consen  415 TLAHGEVV-CAVTIS----NPTRHVYTGG---------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTL  480 (705)
T ss_pred             hhccCcEE-EEEEec----CCcceeEecC---------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceE
Confidence            34677766 999999    5566666665         555667998632   233334322 23333444444  9999


Q ss_pred             EEeeCCCcEEEEECCCCcE-----------------------EEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-
Q psy18018         95 VSGSDDNTLKVWSATTGKC-----------------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-  150 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~-----------------------ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-  150 (635)
                      ++|+.-.++.|||+.....                       +.+++..||.|.|||+.+...++.|+||+..+.||.. 
T Consensus       481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            9999999999999876433                       3788999999999999999999999999999999999 


Q ss_pred             -cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEE
Q psy18018        151 -DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS  229 (635)
Q Consensus       151 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  229 (635)
                       ||..|.||+-|.+||-||+.+++.+.+......+...-..+.++.|++|-.++.+.+..... .....+.-|...|.++
T Consensus       561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSl  639 (705)
T KOG0639|consen  561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSL  639 (705)
T ss_pred             CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEE
Confidence             89999999999999999999999888777777777777788899999999999999987643 4445677899999999


Q ss_pred             Eee--CCEEEEeeCceeEEEecccc
Q psy18018        230 QMA--GNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       230 ~~~--~~~l~s~~~dg~i~~w~~~~  252 (635)
                      .|.  |+++++.+.|+.+..|...-
T Consensus       640 KFa~cGkwfvStGkDnlLnawrtPy  664 (705)
T KOG0639|consen  640 KFAYCGKWFVSTGKDNLLNAWRTPY  664 (705)
T ss_pred             EecccCceeeecCchhhhhhccCcc
Confidence            994  99999999999999998654

>KOG2055|consensus

Probab=99.88  E-value=1.4e-20  Score=166.48  Aligned_cols=282  Identities=14%  Similarity=0.217  Sum_probs=210.8

Q ss_pred             cceeEEeeeccCCCEEEEEeCCCcEEEEECCC--CeEEEEEeCCCCCeEEEEe--eCC-EEEEeeCceeEEEecccceee
Q psy18018        181 ETEVELSHGYALRSRIVSGSDDNTLKVWSATT--GKCLRTLIGHTGGVWSSQM--AGN-IIISGSTDRTLKGWSNAERIL  255 (635)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~--~~~-~l~s~~~dg~i~~w~~~~~~~  255 (635)
                      +..+....+.+....|++++.|+.+++|-+..  ...++.+.-...+|.+..|  +|. .+++++....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            34555666667778999999999999998753  4566777667788888888  466 899999999999999977644


Q ss_pred             eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhh
Q psy18018        256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATL  335 (635)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (635)
                      ......                                                                          
T Consensus       293 ~k~~~~--------------------------------------------------------------------------  298 (514)
T KOG2055|consen  293 TKLKPP--------------------------------------------------------------------------  298 (514)
T ss_pred             ccccCC--------------------------------------------------------------------------
Confidence            221110                                                                          


Q ss_pred             ccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcc
Q psy18018        336 HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       336 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                       ..........+.+++++++++..+..|.|.+....+++.+..++- .+.|..++|+                       
T Consensus       299 -~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fs-----------------------  353 (514)
T KOG2055|consen  299 -YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFS-----------------------  353 (514)
T ss_pred             -CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEe-----------------------
Confidence             011122334456899999999999999999999999988877654 3556666664                       


Q ss_pred             eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC---ccEEEEEecCCEEEEEeCCCcEEEEECCC------C
Q psy18018        416 KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ---SLTSGMELRNNILVSGNADSTVKVWDIVS------G  486 (635)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~~~~l~s~~~dg~i~iwd~~~------~  486 (635)
                              .+++.|++.+.+|.|.+||++...++.++....   +.-.|++.++.+||+|+..|.|.|||..+      .
T Consensus       354 --------Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P  425 (514)
T KOG2055|consen  354 --------SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP  425 (514)
T ss_pred             --------cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence                    455667777777788888888777777765432   23446667899999999999999999653      3


Q ss_pred             ceeEEecCCCcccccEEEEEe--cCCEEEEEeC--CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSD--DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS  562 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  562 (635)
                      +++..+..   -...|++++|  |.+.||.+|.  ...+|+-.+.+......++...        ..-+.|+|++|||.+
T Consensus       426 kPik~~dN---Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--------~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  426 KPIKTVDN---LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--------TKVGHVTCMAFSPNS  494 (514)
T ss_pred             Cchhhhhh---hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--------CcccceEEEEecCCC
Confidence            45555554   6778999999  5788887774  5679999998877666655421        123578999999999


Q ss_pred             eEEEEecCCCeEEEEeCC
Q psy18018        563 RFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       563 ~~l~~~~~d~~v~iwd~~  580 (635)
                      .+||.|..+|.|.+|.+.
T Consensus       495 G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  495 GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEeecCCCceeeEeec
Confidence            999999999999999875

>KOG1274|consensus

Probab=99.88  E-value=1.3e-20  Score=180.85  Aligned_cols=239  Identities=19%  Similarity=0.246  Sum_probs=194.3

Q ss_pred             eCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCC-ccee-------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee
Q psy18018        380 MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG-TKKL-------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLR  449 (635)
Q Consensus       380 ~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~-------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  449 (635)
                      ..|...-+.++++  ++++.+++.||.|++|+.... +...       ....+..++.+|++++.+++|.+|.+.+++.-
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            4678888888886  789999999999999987665 2222       22235567779999999999999999988776


Q ss_pred             eeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEE
Q psy18018        450 HTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWD  525 (635)
Q Consensus       450 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd  525 (635)
                      ..+....-++..+++  +|++++.|++|-.|++.++.+......+.+   |..+|.++.++  +++||+.+-||.|++||
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---HDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc---cCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            555555666666666  566999999999999999999999999988   99999999994  89999999999999999


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                      +.++.+...+..-.....   ......+..++|+|++..++....|+.|++|+..+.+....+..   ..+...+..++|
T Consensus       167 ~~~~~~~~tl~~v~k~n~---~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~---~~~ss~~~~~~w  240 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNE---FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD---KLSSSKFSDLQW  240 (933)
T ss_pred             cccchhhhhcccCCcccc---ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc---cccccceEEEEE
Confidence            999987776655322221   11255778899999998888899999999999999998888753   234445999999


Q ss_pred             CCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        606 SETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       606 s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ||.|+|||+++.||.  +.||.+|
T Consensus       241 sPnG~YiAAs~~~g~--I~vWnv~  262 (933)
T KOG1274|consen  241 SPNGKYIAASTLDGQ--ILVWNVD  262 (933)
T ss_pred             cCCCcEEeeeccCCc--EEEEecc
Confidence            999999999999998  4555554

>KOG0650|consensus

Probab=99.88  E-value=7.9e-21  Score=173.39  Aligned_cols=301  Identities=16%  Similarity=0.247  Sum_probs=218.0

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc---CCEEE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS---GSRIV   95 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~   95 (635)
                      ..++||++.| +|+...    |.|.|||+|+.++.++        ||.+.++++++++.--  .+|.|++|+   ..-++
T Consensus       394 lvyrGHtg~V-r~iSvd----p~G~wlasGsdDGtvr--------iWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vL  458 (733)
T KOG0650|consen  394 LVYRGHTGLV-RSISVD----PSGEWLASGSDDGTVR--------IWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVL  458 (733)
T ss_pred             eeEeccCCeE-EEEEec----CCcceeeecCCCCcEE--------EEEeecceEEEEEeec--ceeEEEEecCCCCceeE
Confidence            5788999999 999999    8999999999765544        6999999999988753  356999999   33344


Q ss_pred             EeeCCCcEEEEECCCCcEE--------EEEe----eCCCcEEEEeCCCC----eEEEEeeCCCcceEEEEe--cCCEEEE
Q psy18018         96 SGSDDNTLKVWSATTGKCL--------LVSG----SRDATLRVWHIESG----ECLHVLVGHLAAVRCVQY--DGKLVVS  157 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~l--------l~~~----~~dg~i~vwd~~~~----~~~~~l~~h~~~v~~l~~--~~~~l~s  157 (635)
                      .+.....+.|-+..-|..+        ++++    ..++.+..|.-...    +-++..-.|..+|..+.|  .|.+|++
T Consensus       459 AvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat  538 (733)
T KOG0650|consen  459 AVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT  538 (733)
T ss_pred             EEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence            4444444777777666443        4444    44678889976522    224455579999999999  8999999


Q ss_pred             EeCC---CeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeC
Q psy18018        158 GAYD---YMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAG  233 (635)
Q Consensus       158 ~~~d---g~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  233 (635)
                      ...+   ..|.|.++........+..... +....+.+...++++++. ..|++||+...+.++.+......|.+     
T Consensus       539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~-----  612 (733)
T KOG0650|consen  539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISS-----  612 (733)
T ss_pred             eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeee-----
Confidence            8764   5789999988877766644444 444444455567776665 47899998776666655432222222     


Q ss_pred             CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccc
Q psy18018        234 NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR  313 (635)
Q Consensus       234 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (635)
                                                                                                      
T Consensus       613 --------------------------------------------------------------------------------  612 (733)
T KOG0650|consen  613 --------------------------------------------------------------------------------  612 (733)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC-ceEEeeeCCCcceeEEEEe
Q psy18018        314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELR  392 (635)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~~v~~l~~~  392 (635)
                                                       ++++|.|..|+.|+.|+.+..||++-. ++.+.++.|...+.+++++
T Consensus       613 ---------------------------------msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H  659 (733)
T KOG0650|consen  613 ---------------------------------MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH  659 (733)
T ss_pred             ---------------------------------eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc
Confidence                                             347888889999999999999998854 5677889999999999998


Q ss_pred             CC--EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEE-eCCCC---ceeeeeccCCcc----EEEE
Q psy18018        393 NN--ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW-EAESG---NLRHTLMGHQSL----TSGM  462 (635)
Q Consensus       393 ~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~-d~~~~---~~~~~~~~~~~~----v~~~  462 (635)
                      +.  ++++++.||++.++.-.                            +| |+-..   -++..+.+|...    |...
T Consensus       660 ~ryPLfas~sdDgtv~Vfhg~----------------------------VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~  711 (733)
T KOG0650|consen  660 KRYPLFASGSDDGTVIVFHGM----------------------------VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT  711 (733)
T ss_pred             cccceeeeecCCCcEEEEeee----------------------------eehhhhcCCceEeeeeccCceeecccceEee
Confidence            54  68888888887776321                            11 11111   245677888765    7777


Q ss_pred             EecCC--EEEEEeCCCcEEEE
Q psy18018        463 ELRNN--ILVSGNADSTVKVW  481 (635)
Q Consensus       463 ~~~~~--~l~s~~~dg~i~iw  481 (635)
                      .|++.  +|++++.||+|++|
T Consensus       712 ~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  712 IWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccCCCceEEecCCCceEEee
Confidence            78765  99999999999998

>KOG4378|consensus

Probab=99.88  E-value=8.6e-21  Score=169.15  Aligned_cols=209  Identities=14%  Similarity=0.260  Sum_probs=159.6

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      ......++++|+..+.|.+||++...+.+.++.|...|+++.++  +.++++++..                        
T Consensus        87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g------------------------  142 (673)
T KOG4378|consen   87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG------------------------  142 (673)
T ss_pred             hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccC------------------------
Confidence            33345789999999999999999888888999999999999987  4455555544                        


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCc-cEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                               |.|.+..+.++....++....+ .|.-+.++   ..+|.+++++|.|.+||+....++..+..  .|..+.
T Consensus       143 ---------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~  211 (673)
T KOG4378|consen  143 ---------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPC  211 (673)
T ss_pred             ---------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCc
Confidence                     4455555555544444443323 23344443   34788999999999999987776665543  477777


Q ss_pred             EEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        503 TCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       503 ~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      ..++|   +..+|++.+.|..|.+||+........+            .+..+.+.++|+++|.+|+.|...|.|..||+
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeeccccccccee------------eecCCcceeeecCCceEEEeecCCceEEEEec
Confidence            77777   5789999999999999999976654443            35788999999999999999999999999999


Q ss_pred             CCCc-eEEeeeeccCCCCCceEEEEEeCCCC
Q psy18018        580 KTGE-FIRNLVSLDSGGSGGVVWRIRASETK  609 (635)
Q Consensus       580 ~~~~-~~~~~~~~~~~~~~~~i~~l~~s~d~  609 (635)
                      ...+ .+..+     ..|...|++++|-|..
T Consensus       280 R~~k~Pv~v~-----sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  280 RSTKAPVAVR-----SAHDASVTRVAFQPSP  305 (673)
T ss_pred             ccCCCCceEe-----eecccceeEEEeeecc
Confidence            8654 45555     5788899999998765

>KOG1273|consensus

Probab=99.88  E-value=2.9e-20  Score=156.21  Aligned_cols=275  Identities=13%  Similarity=0.212  Sum_probs=198.3

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ..++.|++.|.+||+|+.+|.|.+||+.+...-+.+.+|..+|.+++|+  +..|++++.|..+.+||+..+.....+++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            6778899999999999999999999999999889999999999999998  78999999999999999999988777765


Q ss_pred             Eee---------CCcEEEEEeCCCcEEEEeCCCCceeeeec----cCCccEEE---EEecCCEEEEEeCCCcEEEEECCC
Q psy18018        422 CLF---------DGVHVVSGSLDTSIRVWEAESGNLRHTLM----GHQSLTSG---MELRNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       422 ~~~---------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~---~~~~~~~l~s~~~dg~i~iwd~~~  485 (635)
                      -+|         +.+..++.-.+..-.+.++..++.. .+.    +..+.+.+   +...|+++++|...|.+.++|..+
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            333         3344444444555566666542211 111    11111111   333688999999999999999999


Q ss_pred             CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      .+++..++...  ...|..+.+  .|++|+.-+.|..||.|+++.--....-........+...-....-.+++||.||.
T Consensus       185 ~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  185 LECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             heeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            99998887521  245666666  79999999999999999987321110000000000000001123456789999999


Q ss_pred             EEEEecC-CCeEEEEeCCCCceEEeeeeccCCCCC-ceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        564 FVITSSD-DGTVKLWDVKTGEFIRNLVSLDSGGSG-GVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       564 ~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      |++.++. ...++||.-..|.+++.+     .+.. .....+.|.|-...+++- ..|.  +.+|...
T Consensus       263 Yv~a~s~~aHaLYIWE~~~GsLVKIL-----hG~kgE~l~DV~whp~rp~i~si-~sg~--v~iw~~~  322 (405)
T KOG1273|consen  263 YVCAGSARAHALYIWEKSIGSLVKIL-----HGTKGEELLDVNWHPVRPIIASI-ASGV--VYIWAVV  322 (405)
T ss_pred             EEEeccccceeEEEEecCCcceeeee-----cCCchhheeecccccceeeeeec-cCCc--eEEEEee
Confidence            9988763 457999999999999988     3444 677889999999888888 5566  5666553

>KOG2445|consensus

Probab=99.88  E-value=4.2e-20  Score=154.81  Aligned_cols=270  Identities=19%  Similarity=0.377  Sum_probs=181.6

Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR  217 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  217 (635)
                      +|..-|.++.|  .|+++|+|+.|++|+|||.....                                     .+..+..
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------------------------------~~W~~Ts   53 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------------------------------GTWSCTS   53 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------------------------------CceEEee
Confidence            78899999999  79999999999999999964322                                     2344556


Q ss_pred             EEeCCCCCeEEEEee----CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccccee
Q psy18018        218 TLIGHTGGVWSSQMA----GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELA  293 (635)
Q Consensus       218 ~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (635)
                      ..+.|.+.|+.+.|.    |+.+++++.|+++.+|.-....                                       
T Consensus        54 ~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~---------------------------------------   94 (361)
T KOG2445|consen   54 SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS---------------------------------------   94 (361)
T ss_pred             eEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc---------------------------------------
Confidence            678999999999993    8899999999999999732110                                       


Q ss_pred             eEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC
Q psy18018        294 LYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG  373 (635)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  373 (635)
                                                                                         .+..-+-|.    
T Consensus        95 -------------------------------------------------------------------~~~~~~~Wv----  103 (361)
T KOG2445|consen   95 -------------------------------------------------------------------EEAHGRRWV----  103 (361)
T ss_pred             -------------------------------------------------------------------cccccceeE----
Confidence                                                                               000111121    


Q ss_pred             ceEEeeeCCCcceeEEEEe----CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC--c
Q psy18018        374 NLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG--N  447 (635)
Q Consensus       374 ~~~~~~~~~~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~  447 (635)
                       ...++....+.|+.+.|.    +-.|++++.||.+|||+....                      ..+.-|.+...  .
T Consensus       104 -~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp----------------------~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen  104 -RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP----------------------MNLSQWTLQHEIQN  160 (361)
T ss_pred             -EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc----------------------cccccchhhhhhhh
Confidence             233455566788888886    446788888888888776432                      12333333211  0


Q ss_pred             eeeeeccCCccEEEEEec-----CCEEEEEeCC-----CcEEEEECCCCc-eeEEecCCCcccccEEEEEec------CC
Q psy18018        448 LRHTLMGHQSLTSGMELR-----NNILVSGNAD-----STVKVWDIVSGQ-CLQTLSGRNKHQSAVTCLQFN------SR  510 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~~-----~~~l~s~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~------~~  510 (635)
                      .+.....+..+..|++|+     ..++++|+.+     +.++||....+. ..........|..+|+.++|.      -.
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence            111222456677788885     3478888776     579999876543 333333333499999999993      35


Q ss_pred             EEEEEeCCCcEEEEECCCCc-------eee-eeccceecCc-eeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        511 FVITSSDDGTVKLWDVKTGE-------FST-PLMSSFILNP-FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       511 ~l~~~~~d~~i~vwd~~~~~-------~~~-~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +||+++.|| |+||.++...       ... .......... ..+-.|...|..+.|.-.|..|++.+.||+||+|...
T Consensus       241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            799999999 9999998421       000 0011111111 1244588999999999999999999999999999754

>KOG0321|consensus

Probab=99.87  E-value=1.4e-20  Score=173.08  Aligned_cols=255  Identities=19%  Similarity=0.255  Sum_probs=162.4

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEe--eeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHT--LMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      ....|++++.|.++++||+.+.++...  +.+|...+.+++|.   +..|++|+.||.+.|||+...........    .
T Consensus       111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~----~  186 (720)
T KOG0321|consen  111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF----D  186 (720)
T ss_pred             CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH----h
Confidence            344567777777777777777776655  88999999999986   67999999999999999875431111000    0


Q ss_pred             cEEEEEeCCCcEEEEeCCC---CceeeeeccCCc----cEEEEEe-cCCEEEEEeC-CCcEEEEECCCCceeEEec----
Q psy18018        427 VHVVSGSLDTSIRVWEAES---GNLRHTLMGHQS----LTSGMEL-RNNILVSGNA-DSTVKVWDIVSGQCLQTLS----  493 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~----~v~~~~~-~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~----  493 (635)
                      + -+++...+. .   ...   .+.+.....+..    .|+.+.| |...||+++. |+.|++||++.........    
T Consensus       187 ~-~~~~~~n~~-p---tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~  261 (720)
T KOG0321|consen  187 N-RIYGRHNTA-P---TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS  261 (720)
T ss_pred             h-hhhccccCC-C---CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence            0 111111110 0   000   011222233333    3555666 6779999888 9999999998654332221    


Q ss_pred             ----CCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        494 ----GRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       494 ----~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                          .+......++++..|  |.+|++.+.|+.|++|++.+....-............+       ..-..+||+.++++
T Consensus       262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~-------vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  262 DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY-------VKSELSPDDCSLLS  334 (720)
T ss_pred             cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee-------eeeecCCCCceEec
Confidence                111123456777775  68888888899999999986542211111101111111       12247899999999


Q ss_pred             ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEE
Q psy18018        568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       568 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~  628 (635)
                      |+.|...++|.+.+.+.--.+.    .+|.-.|++++|.|... -++++++|-+  +++|.+
T Consensus       335 gSsd~~ayiw~vs~~e~~~~~l----~Ght~eVt~V~w~pS~~t~v~TcSdD~~--~kiW~l  390 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPEAPPALL----LGHTREVTTVRWLPSATTPVATCSDDFR--VKIWRL  390 (720)
T ss_pred             cCCCcceeeeeecCccCChhhh----hCcceEEEEEeeccccCCCceeeccCcc--eEEEec
Confidence            9999999999999877644433    58999999999987432 4555688877  666665

>KOG1273|consensus

Probab=99.86  E-value=1.9e-19  Score=151.38  Aligned_cols=265  Identities=17%  Similarity=0.259  Sum_probs=191.0

Q ss_pred             EEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC
Q psy18018         85 TCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY  160 (635)
Q Consensus        85 ~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~  160 (635)
                      .|+.|+  |.+||.|..||.|.+||..                     |...-+.+.+|..+|++++|  ||+.|+|+|.
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~---------------------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~   85 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFD---------------------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSR   85 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEcc---------------------ccchhhhhhccccceeEEEecCCCCEeeeecC
Confidence            799999  9999999988888887765                     45566788899999999999  9999999999


Q ss_pred             CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEe-CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEe
Q psy18018        161 DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGS-DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISG  239 (635)
Q Consensus       161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~  239 (635)
                      |..|.+||+..|.+++++....++..+...+.....+.++ -+..-.+.++..            ++.       .++.-
T Consensus        86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~------------~~h-------~~Lp~  146 (405)
T KOG1273|consen   86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD------------PKH-------SVLPK  146 (405)
T ss_pred             CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC------------Cce-------eeccC
Confidence            9999999999999888887777776666655443332221 111111111111            000       01111


Q ss_pred             eCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEee
Q psy18018        240 STDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA  319 (635)
Q Consensus       240 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (635)
                      +.||.+.                                                                         
T Consensus       147 d~d~dln-------------------------------------------------------------------------  153 (405)
T KOG1273|consen  147 DDDGDLN-------------------------------------------------------------------------  153 (405)
T ss_pred             CCccccc-------------------------------------------------------------------------
Confidence            1111100                                                                         


Q ss_pred             cCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEe--CCEE
Q psy18018        320 EDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELR--NNIL  396 (635)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~--~~~l  396 (635)
                                            .......|.+.|+++++|+..|.+.+++..+.+++..++-.. ..|..+.++  ++.|
T Consensus       154 ----------------------~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l  211 (405)
T KOG1273|consen  154 ----------------------SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL  211 (405)
T ss_pred             ----------------------cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence                                  011111378889999999999999999999999998887766 677887776  8899


Q ss_pred             EEEeCCCcEEEEEccCC-------c-------------ceeEEEEEeeCCcEEEEEe-CCCcEEEEeCCCCceeeeeccC
Q psy18018        397 VSGNADSTVKVWDIVSG-------T-------------KKLMFRICLFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMGH  455 (635)
Q Consensus       397 ~s~~~dg~i~iwd~~~~-------~-------------~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~  455 (635)
                      +.-+.|..|+.|++..-       +             .......++.+|.|+.+++ ....+++|.-..|.+++.+.|.
T Consensus       212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~  291 (405)
T KOG1273|consen  212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT  291 (405)
T ss_pred             EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence            99999999999987621       1             1122335788999988876 3468999999999999999988


Q ss_pred             Cc-cEEEEEecCC--EEEEEeCCCcEEEEECCC
Q psy18018        456 QS-LTSGMELRNN--ILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       456 ~~-~v~~~~~~~~--~l~s~~~dg~i~iwd~~~  485 (635)
                      .+ ....+.|++-  .+++- ..|.+++|....
T Consensus       292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             chhheeecccccceeeeeec-cCCceEEEEeec
Confidence            74 5667777754  34444 779999998654

>KOG4378|consensus

Probab=99.86  E-value=5.2e-20  Score=164.25  Aligned_cols=251  Identities=15%  Similarity=0.230  Sum_probs=192.0

Q ss_pred             cCCCeEEEEEccCCceEEeeeCCCc--ceeEEEEe-CCEEEEE--eCCCcEEEEEccCCcce--eEEE---------EEe
Q psy18018        360 SLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR-NNILVSG--NADSTVKVWDIVSGTKK--LMFR---------ICL  423 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~-~~~l~s~--~~dg~i~iwd~~~~~~~--~~~~---------~~~  423 (635)
                      +....+++||....+....+..|+.  .+.++.|+ .+.|+++  +.|..+++|.-......  ..-.         .+.
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~   88 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA   88 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence            3334699999987666555555443  47888887 3435544  56778889875544111  1111         122


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      ....++++|+..+.+++||++...+.+.+++|.+.|+++.++  ..++|+++..|.|.|..+.++....++...  ....
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~--sgqs  166 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID--SGQS  166 (673)
T ss_pred             hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC--CCCe
Confidence            345789999999999999999777788899999999999985  559999999999999999998877777642  2234


Q ss_pred             EEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCCeEEEE
Q psy18018        502 VTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDGTVKLW  577 (635)
Q Consensus       502 v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~v~iw  577 (635)
                      |.-+.++   ..+|.+++.+|.|.+||+.....+.....          .|+.+...+||+|.. .+|++.+.|..|.+|
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~----------~HsAP~~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE----------AHSAPCRGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh----------hccCCcCcceecCCccceEEEecccceEEEe
Confidence            4566663   45788999999999999987664443332          489999999999965 578889999999999


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |+.+.+....+.      ...+..+++|+++|.+|++|...|.    |+.||...
T Consensus       237 D~~s~~s~~~l~------y~~Plstvaf~~~G~~L~aG~s~G~----~i~YD~R~  281 (673)
T KOG4378|consen  237 DIRSQASTDRLT------YSHPLSTVAFSECGTYLCAGNSKGE----LIAYDMRS  281 (673)
T ss_pred             ecccccccceee------ecCCcceeeecCCceEEEeecCCce----EEEEeccc
Confidence            999887777773      4568999999999999999999997    88888764

>KOG0650|consensus

Probab=99.86  E-value=2.6e-19  Score=163.64  Aligned_cols=202  Identities=15%  Similarity=0.184  Sum_probs=152.7

Q ss_pred             EEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec
Q psy18018        376 RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  453 (635)
Q Consensus       376 ~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  453 (635)
                      ++..-.|...|..+.|+  |++|++...++                              ....|.++++...+....|.
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~------------------------------~~~~VliHQLSK~~sQ~PF~  563 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDS------------------------------GNKSVLIHQLSKRKSQSPFR  563 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCC------------------------------CcceEEEEecccccccCchh
Confidence            34555678889999997  77888776553                              34567778887776666676


Q ss_pred             cCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018        454 GHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG  529 (635)
Q Consensus       454 ~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~  529 (635)
                      -..+.+.++.|++.  +|++++. ..|+|||+...+.++.+..   ....|..++.  +|..|+.++.|+.+..||+.-.
T Consensus       564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            66778888888754  6666654 5699999999888887776   5666777777  5799999999999999999865


Q ss_pred             c-eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe------CCCCceEEeeeeccCCCCC----c
Q psy18018        530 E-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD------VKTGEFIRNLVSLDSGGSG----G  598 (635)
Q Consensus       530 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd------~~~~~~~~~~~~~~~~~~~----~  598 (635)
                      . ..+.++           .|...+++++|++.-.++++|+.||++.|+-      +-...++-.+..+  .+|.    .
T Consensus       640 skPyk~lr-----------~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L--~gH~~~~~~  706 (733)
T KOG0650|consen  640 SKPYKTLR-----------LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL--RGHEKTNDL  706 (733)
T ss_pred             cchhHHhh-----------hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec--cCceeeccc
Confidence            3 233333           2788999999999999999999999999984      3333333333322  3444    3


Q ss_pred             eEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        599 VVWRIRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      .|....|+|...+|.+++.||+  ++||
T Consensus       707 gVLd~~wHP~qpWLfsAGAd~t--irlf  732 (733)
T KOG0650|consen  707 GVLDTIWHPRQPWLFSAGADGT--IRLF  732 (733)
T ss_pred             ceEeecccCCCceEEecCCCce--EEee
Confidence            4889999999999999999999  6665

>KOG1034|consensus

Probab=99.85  E-value=1e-19  Score=153.98  Aligned_cols=241  Identities=17%  Similarity=0.285  Sum_probs=168.5

Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      .-++++|+.-|.|++.|+.+++....+.+|...|+.+.+.   ++++++++.|..                         
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-------------------------  159 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-------------------------  159 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-------------------------
Confidence            3468888899999999999999999999999999999986   345555555554                         


Q ss_pred             EEEeCCCcEEEEeCCCCceeeee---ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCcee---------------
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCL---------------  489 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~---------------  489 (635)
                              |++|++++..++..+   .+|...|.++.++  ++++++++.|.++++|++...+..               
T Consensus       160 --------vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~  231 (385)
T KOG1034|consen  160 --------VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT  231 (385)
T ss_pred             --------EEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence                    555555555554443   4699999999984  679999999999999999732111               


Q ss_pred             ----------EEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEEC-CCCceeeeeccceecCce-eEE-eccCceecc
Q psy18018        490 ----------QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV-KTGEFSTPLMSSFILNPF-YFL-IYSQPLLCP  556 (635)
Q Consensus       490 ----------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~  556 (635)
                                ..+....-|...|-|+.|=|+++++=|-++.|..|.. +-.+.+...........+ ... .....|.-+
T Consensus       232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi  311 (385)
T KOG1034|consen  232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI  311 (385)
T ss_pred             CcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence                      0111122366677777777899999999999999987 322222222111111110 001 112234444


Q ss_pred             --cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        557 --HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       557 --~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                        +|.|-+++||.|...|.|.+||++..+....- .+........|...+||.||..|+..++|++    +|.||.-
T Consensus       312 rf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t-tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~----Vwrwdrv  383 (385)
T KOG1034|consen  312 RFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT-TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT----VWRWDRV  383 (385)
T ss_pred             EEeecHHHHHHhhccCCCcEEEEECCCCCCccCc-eEEeccccceeeeeeecccCcEEEEEeCCCc----EEEEEee
Confidence              45566899999999999999999987764222 2222345678999999999999999999998    8988853

>KOG0269|consensus

Probab=99.85  E-value=1.3e-20  Score=177.37  Aligned_cols=188  Identities=22%  Similarity=0.355  Sum_probs=153.7

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCC---CceeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAES---GNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      .+.++|++++..|.|.+||+..   .+++..+..|+..+.++.|+   +++|++|+.||.|++||++..+....+.+   
T Consensus        98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---  174 (839)
T KOG0269|consen   98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---  174 (839)
T ss_pred             chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---
Confidence            4678899999999999999987   66777899999999999994   77999999999999999999888888877   


Q ss_pred             ccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        498 HQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       498 ~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                      ....|..+.|   .+..++++.+.|.+++||++....-.          ....+|.++|.|+.|+|++.+|||||.|++|
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~----------~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE----------KKLTAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH----------HHhhcccCceEEEeecCCCceeeecCCCccE
Confidence            7788999999   48899999999999999998654211          1233589999999999999999999999999


Q ss_pred             EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEEee
Q psy18018        575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +|||..+.+.-....    -....++.+|+|-|+.+ .||+++.-+.  ..|.+||+
T Consensus       245 kiWd~t~~~~~~~~t----InTiapv~rVkWRP~~~~hLAtcsmv~d--tsV~VWDv  295 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHT----INTIAPVGRVKWRPARSYHLATCSMVVD--TSVHVWDV  295 (839)
T ss_pred             EEEeccCCCccceeE----EeecceeeeeeeccCccchhhhhhcccc--ceEEEEee
Confidence            999998755432221    13457899999999987 5666665554  44555554

>KOG1034|consensus

Probab=99.85  E-value=8.1e-20  Score=154.52  Aligned_cols=305  Identities=15%  Similarity=0.240  Sum_probs=199.3

Q ss_pred             eeCCCcceEEEEe------c-CCEEEEEeCCCeEEEEeCCCcc---ceeeccc--cceeEEeeec----c-CCCEEEEEe
Q psy18018        138 LVGHLAAVRCVQY------D-GKLVVSGAYDYMVKIWNPDTEE---CLHAELQ--ETEVELSHGY----A-LRSRIVSGS  200 (635)
Q Consensus       138 l~~h~~~v~~l~~------~-~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~--~~~~~~~~~~----~-~~~~l~~~~  200 (635)
                      ...|..+|..++|      + .+.+|+++ ...+.+|.....-   .++....  +.+....+.+    . .+..+++++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            3478899999999      2 34455554 4667777654332   2222221  1222222221    1 245788889


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccc
Q psy18018        201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF  280 (635)
Q Consensus       201 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (635)
                      .-|.|++.|+.++++...+.+|...|..+.+.                                                
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~------------------------------------------------  144 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFH------------------------------------------------  144 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcC------------------------------------------------
Confidence            99999999999999999999999988877752                                                


Q ss_pred             ccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEe
Q psy18018        281 QRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSG  359 (635)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~  359 (635)
                                                                                            | +.++++++
T Consensus       145 ----------------------------------------------------------------------p~~~qlvls~  154 (385)
T KOG1034|consen  145 ----------------------------------------------------------------------PDRPQLVLSA  154 (385)
T ss_pred             ----------------------------------------------------------------------CCCCcEEEEe
Confidence                                                                                  2 12345555


Q ss_pred             cCCCeEEEEEccCCceEEee---eCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE---EEeeCCcEEEE
Q psy18018        360 SLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR---ICLFDGVHVVS  431 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~l~~  431 (635)
                      +.|..|++|++++..++..+   .+|...|.++.|+  ++++++++.|-++++|++...+......   .+++++...-.
T Consensus       155 SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf  234 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF  234 (385)
T ss_pred             cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence            55555556666555555443   5799999999997  7899999999999999998654322222   12232221000


Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEEC-CCCce-------------eEEecCCCc
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI-VSGQC-------------LQTLSGRNK  497 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~-------------~~~~~~~~~  497 (635)
                      -  .-...+.+..      +-.-|...|-|+.|-++++++-+-++.|..|.. +-.+.             +.++..   
T Consensus       235 p--t~~~~fp~fs------t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~---  303 (385)
T KOG1034|consen  235 P--TPKTHFPDFS------TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY---  303 (385)
T ss_pred             C--cccccccccc------ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc---
Confidence            0  0001111111      334588899999999999999999999999987 22222             122222   


Q ss_pred             ccccEEEEEe--c--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe
Q psy18018        498 HQSAVTCLQF--N--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT  573 (635)
Q Consensus       498 ~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  573 (635)
                      ....|.-+.|  |  ++.||.|...|.+.+||++..+....- .      .....-...|...+||.|+.+|+...+|++
T Consensus       304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t-t------l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT-T------LTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc-e------EEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            3344555555  4  789999999999999999987643111 0      111112457899999999999999999999


Q ss_pred             EEEEeC
Q psy18018        574 VKLWDV  579 (635)
Q Consensus       574 v~iwd~  579 (635)
                      |.-||-
T Consensus       377 Vwrwdr  382 (385)
T KOG1034|consen  377 VWRWDR  382 (385)
T ss_pred             EEEEEe
Confidence            999984

>KOG0270|consensus

Probab=99.85  E-value=6.2e-20  Score=161.63  Aligned_cols=207  Identities=20%  Similarity=0.333  Sum_probs=153.9

Q ss_pred             CCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceE----EEEEEc---------CCEEEEeeCCCcEEEE
Q psy18018         40 PCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVI----TCLQFS---------GSRIVSGSDDNTLKVW  106 (635)
Q Consensus        40 ~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi----~~~~~s---------~~~l~s~~~d~~v~vW  106 (635)
                      |+-.+|+++....-+..   --+.||+-..    .-|--|++-++    .|++|-         |+|+|.|.-|..|.||
T Consensus       135 psDnlIl~ar~eddvs~---LEvYVyn~~e----~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  135 PSDNLILCARNEDDVSY---LEVYVYNEEE----ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cCCcEEEEeeccCCceE---EEEEEEcCCC----cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            66677777665543321   1223344222    22334444332    355552         7899999999999999


Q ss_pred             ECCCCcE-------------------------------------------EEEEeeCCCcEEEEeCCCCeEEEEeeCCCc
Q psy18018        107 SATTGKC-------------------------------------------LLVSGSRDATLRVWHIESGECLHVLVGHLA  143 (635)
Q Consensus       107 d~~~~~~-------------------------------------------ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~  143 (635)
                      |+.--..                                           +||+|+.|.+|++||+.++++..++..|.+
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k  287 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK  287 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence            9752111                                           299999999999999999999999999999


Q ss_pred             ceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceee-ccccceeEEeee-ccCCCEEEEEeCCCcEEEEECCC-CeEEE
Q psy18018        144 AVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHA-ELQETEVELSHG-YALRSRIVSGSDDNTLKVWSATT-GKCLR  217 (635)
Q Consensus       144 ~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~-~~~~~  217 (635)
                      .|.++.|   .+..|++|+.|++|.+.|.+....... ......+..... ......+++++.||.++-+|++. ++++.
T Consensus       288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw  367 (463)
T KOG0270|consen  288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW  367 (463)
T ss_pred             ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee
Confidence            9999999   788999999999999999985322221 111222222222 22346788899999999999987 59999


Q ss_pred             EEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccce
Q psy18018        218 TLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       218 ~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~  253 (635)
                      ++++|.++|.+++++   .++++|++.|+.+++|++...
T Consensus       368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            999999999999995   779999999999999997653

>KOG4328|consensus

Probab=99.85  E-value=4.9e-19  Score=156.58  Aligned_cols=301  Identities=16%  Similarity=0.185  Sum_probs=203.9

Q ss_pred             eecCCCCCCceeeccCcceEEEEEEc----CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeC
Q psy18018         65 WRTRPIKDPKVLKGHDDHVITCLQFS----GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVG  140 (635)
Q Consensus        65 wd~~~~~~~~~l~~h~~~vi~~~~~s----~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~  140 (635)
                      .|..........+-|.+++ +|++|.    -+++|+|..-|.|-+||+.+.+                 ....-+..+..
T Consensus       171 l~l~~~~~~~v~kv~~~Ri-t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-----------------~d~d~v~~f~~  232 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRI-TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-----------------KDKDGVYLFTP  232 (498)
T ss_pred             cccccceecceeEecccce-EEEEecccCcceEEEEccCCCcEEEEecCCCC-----------------CccCceEEecc
Confidence            3444445556667788887 899998    3677777777888888875322                 12234566779


Q ss_pred             CCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCcccee--eccccceeEEeeec-cCCCEEEEEeCCCcEEEEECCCCe
Q psy18018        141 HLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLH--AELQETEVELSHGY-ALRSRIVSGSDDNTLKVWSATTGK  214 (635)
Q Consensus       141 h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~  214 (635)
                      |.++|.+|.|   +...+++.|.||+|++=|+++...-.  .............+ .....++.+..-|...+||++++.
T Consensus       233 hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~  312 (498)
T KOG4328|consen  233 HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG  312 (498)
T ss_pred             CCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC
Confidence            9999999999   78899999999999999998875332  22223333333333 345667777777899999998855


Q ss_pred             E-EEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        215 C-LRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       215 ~-~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                      . ...+.-|...|.+++++   ..+|+|++.|++.++||++.-....                                 
T Consensus       313 s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~---------------------------------  359 (498)
T KOG4328|consen  313 SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA---------------------------------  359 (498)
T ss_pred             ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC---------------------------------
Confidence            4 66677899999999996   6799999999999999987521100                                 


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA  370 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~  370 (635)
                                                               ...+....+.+......|||.+..|++.+.|..|++||.
T Consensus       360 -----------------------------------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  360 -----------------------------------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             -----------------------------------------CcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence                                                     001122334455666789998888999999999999997


Q ss_pred             c----CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE-EEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        371 E----SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF-RICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       371 ~----~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                      .    .-.+..++. |.                          -.+++....+ ..+.|+..++++|..-..|-++|...
T Consensus       399 s~~sa~~~p~~~I~-Hn--------------------------~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~  451 (498)
T KOG4328|consen  399 SCISAKDEPLGTIP-HN--------------------------NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG  451 (498)
T ss_pred             ccccccCCccceee-cc--------------------------CcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence            4    111222221 11                          1111222222 23567888899999999999999988


Q ss_pred             CceeeeeccCCc-cEE---EEEecCC-EEEEEeCCCcEEEEECC
Q psy18018        446 GNLRHTLMGHQS-LTS---GMELRNN-ILVSGNADSTVKVWDIV  484 (635)
Q Consensus       446 ~~~~~~~~~~~~-~v~---~~~~~~~-~l~s~~~dg~i~iwd~~  484 (635)
                      ++.+..+..... .|.   .+.+-+. +++-++..|.|+||.-+
T Consensus       452 ~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  452 GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             CEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            887777655433 333   3334445 55555667888888644

>KOG0269|consensus

Probab=99.85  E-value=6.7e-21  Score=179.27  Aligned_cols=222  Identities=19%  Similarity=0.324  Sum_probs=164.7

Q ss_pred             EEEeeCCCcEEEEeCCC---CeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEee
Q psy18018        115 LVSGSRDATLRVWHIES---GECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH  188 (635)
Q Consensus       115 l~~~~~dg~i~vwd~~~---~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  188 (635)
                      ||+++..|.|.+||+..   .+.+..|..|...++++.|   ...+|++||.||+|++||++..+....+....+.+..+
T Consensus       103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV  182 (839)
T KOG0269|consen  103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV  182 (839)
T ss_pred             heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence            44444444444444444   4667788999999999999   78899999999999999999888777777665544444


Q ss_pred             ecc--CCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccc
Q psy18018        189 GYA--LRSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDS  263 (635)
Q Consensus       189 ~~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~  263 (635)
                      .|.  .++.++++.+.|.+++||++. .++...+.+|.++|.++.|+  +.+|+|||.|+.|++|++.+......     
T Consensus       183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-----  257 (839)
T KOG0269|consen  183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-----  257 (839)
T ss_pred             eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-----
Confidence            443  367899999999999999986 46677889999999999995  77999999999999999876422110     


Q ss_pred             cCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCC
Q psy18018        264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV  343 (635)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (635)
                                                                                              +.......
T Consensus       258 ------------------------------------------------------------------------~tInTiap  265 (839)
T KOG0269|consen  258 ------------------------------------------------------------------------HTINTIAP  265 (839)
T ss_pred             ------------------------------------------------------------------------eEEeecce
Confidence                                                                                    00111122


Q ss_pred             CceEEEEecCc-EEEEec--CCCeEEEEEccCCc-eEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCC
Q psy18018        344 PDLFGFQFDGV-HVVSGS--LDTSIRVWEAESGN-LRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSG  413 (635)
Q Consensus       344 ~~~~~~s~~~~-~l~~~~--~dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~  413 (635)
                      ...+.|.|... +|++++  .|-.|+|||+...- +..++..|+..++.++|.   ...+.+++.||.+..-.+++.
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            33455666443 455544  37789999997543 457889999999999997   358999999998876655443

>KOG0649|consensus

Probab=99.84  E-value=9.2e-18  Score=136.03  Aligned_cols=251  Identities=14%  Similarity=0.197  Sum_probs=185.3

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccC----------CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcc--
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAES----------GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK--  415 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~----------~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~--  415 (635)
                      +++|.+++|++|..+|.|.++.+.+          ...+...++|+++++.++|..++|++++. |.|+-|.-+....  
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~   95 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESL   95 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhc
Confidence            4889999999999999999998763          12455668999999999999998888876 9999886433211  


Q ss_pred             --------------------eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe
Q psy18018        416 --------------------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN  473 (635)
Q Consensus       416 --------------------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  473 (635)
                                          ........|..+.++.++.|+.++.||+++|+...++++|+..+.++..  ....+++|+
T Consensus        96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~  175 (325)
T KOG0649|consen   96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA  175 (325)
T ss_pred             cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence                                0111124566677777779999999999999999999999999999987  355899999


Q ss_pred             CCCcEEEEECCCCceeEEecCCC------cc-cccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeE
Q psy18018        474 ADSTVKVWDIVSGQCLQTLSGRN------KH-QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       474 ~dg~i~iwd~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  546 (635)
                      +||++++||.++++.+..+....      +| ...|-+++.+..+|++|+. ..+.+|.+++.+....+..         
T Consensus       176 EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpi---------  245 (325)
T KOG0649|consen  176 EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPI---------  245 (325)
T ss_pred             CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEec---------
Confidence            99999999999999988776421      12 2347788889999998874 5699999999887776653         


Q ss_pred             EeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC-CeEEEEccCCCe
Q psy18018        547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET-KLVCAVGSRNGT  620 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d-~~~l~~~~~dg~  620 (635)
                         ..++..+.|  +.+.+++++..+.|.-|.+. |..-....     ......++..++.. -+.|..++....
T Consensus       246 ---pa~v~~v~F--~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip-----~~s~~c~s~s~~~~p~k~~s~ag~s~~  309 (325)
T KOG0649|consen  246 ---PARVHLVDF--VDDCVLIGGEGNHVQSYTLN-GVLQANIP-----VESTACYSASWQTSPIKFISIAGFSNK  309 (325)
T ss_pred             ---ccceeEeee--ecceEEEeccccceeeeeec-cEEEEecc-----CCccceeeecccCCceEEEEeccccee
Confidence               445555566  55677888888899999875 55444442     22223344444322 445555555544

>KOG0649|consensus

Probab=99.84  E-value=9.9e-18  Score=135.86  Aligned_cols=282  Identities=16%  Similarity=0.251  Sum_probs=190.5

Q ss_pred             eccCCCEEEEEeCCCcEEEEECCC----------CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecc
Q psy18018        189 GYALRSRIVSGSDDNTLKVWSATT----------GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIG  258 (635)
Q Consensus       189 ~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~  258 (635)
                      ..+...+|++|..+|.|.+..+.+          ..++...++|.++++.++|...+|++++. |.|+-|...+......
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLA   96 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhcc
Confidence            345678899999999999998753          23445568999999999999999998886 9999997655321000


Q ss_pred             ccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccc
Q psy18018        259 QLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRN  338 (635)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (635)
                                                                          .          ..+|.....   .....
T Consensus        97 ----------------------------------------------------~----------K~lwe~~~P---~~~~~  111 (325)
T KOG0649|consen   97 ----------------------------------------------------T----------KRLWEVKIP---MQVDA  111 (325)
T ss_pred             ----------------------------------------------------c----------hhhhhhcCc---cccCc
Confidence                                                                0          000100000   00001


Q ss_pred             cccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcce
Q psy18018        339 KKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       339 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      ..-..+..+-+.|..+-++.++.|+.++-||+++|+...++++|+..+.++.-.  ...+++|+.||++++||.++.+..
T Consensus       112 ~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v  191 (325)
T KOG0649|consen  112 VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV  191 (325)
T ss_pred             ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee
Confidence            112334455677777777777799999999999999999999999999999873  456777777777777777766554


Q ss_pred             eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC-ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018        417 LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  495 (635)
                      ..+..                   |     +....++.|. ..|.+++.+.+++++|+.- .+.+|.+++.++...+.  
T Consensus       192 ~~ie~-------------------y-----k~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse~t~vfp--  244 (325)
T KOG0649|consen  192 SMIEP-------------------Y-----KNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP--  244 (325)
T ss_pred             EEecc-------------------c-----cChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCCceEEEe--
Confidence            33221                   1     1111233343 4688899999999888754 59999999999988887  


Q ss_pred             CcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecCCCeE
Q psy18018        496 NKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDDGTV  574 (635)
Q Consensus       496 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~v  574 (635)
                        ...++..+.|..+.+++++..+.+.-|.+. |.+....+..           +...++..++.. -++|-.++..+.+
T Consensus       245 --ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-----------s~~c~s~s~~~~p~k~~s~ag~s~~~  310 (325)
T KOG0649|consen  245 --IPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVE-----------STACYSASWQTSPIKFISIAGFSNKL  310 (325)
T ss_pred             --cccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCC-----------ccceeeecccCCceEEEEecccceee
Confidence              567788899999999999988899999876 4443333322           222333333322 3455556666666


Q ss_pred             EEE
Q psy18018        575 KLW  577 (635)
Q Consensus       575 ~iw  577 (635)
                      .|+
T Consensus       311 ~i~  313 (325)
T KOG0649|consen  311 HIL  313 (325)
T ss_pred             eee
Confidence            665

>KOG0267|consensus

Probab=99.84  E-value=3.6e-21  Score=179.60  Aligned_cols=186  Identities=26%  Similarity=0.527  Sum_probs=162.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                      .++.++.|+.|..+-+|.+.....+..+.+|+++|.++.++  ..++++|+.+|+|++||+..++.++.+.+   |...+
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg---h~~~~  115 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG---HLLNI  115 (825)
T ss_pred             cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc---cccCc
Confidence            34556777777777777777666666799999999999986  45899999999999999999999999988   99999


Q ss_pred             EEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        503 TCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       503 ~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      .++.|+  +.|.+.|+.|+.+++||++...+...+..           |...+.++.|+|+|++++.+++|.+++|||+.
T Consensus       116 ~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-----------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  116 TSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-----------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             ceeeeccceEEeccccccccceehhhhccCceeeecC-----------CcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            999995  78899999999999999997666655554           67889999999999999999999999999999


Q ss_pred             CCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe-ee
Q psy18018        581 TGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD-FD  631 (635)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d-~~  631 (635)
                      .|+.+..|     ..|...+.++.|.|..-+|+.|+.|++  +++|.++ |+
T Consensus       185 agk~~~ef-----~~~e~~v~sle~hp~e~Lla~Gs~d~t--v~f~dletfe  229 (825)
T KOG0267|consen  185 AGKLSKEF-----KSHEGKVQSLEFHPLEVLLAPGSSDRT--VRFWDLETFE  229 (825)
T ss_pred             cccccccc-----ccccccccccccCchhhhhccCCCCce--eeeeccceeE
Confidence            99999999     578999999999999999999999999  7777776 44

>KOG0302|consensus

Probab=99.84  E-value=5.1e-19  Score=152.55  Aligned_cols=188  Identities=21%  Similarity=0.475  Sum_probs=131.2

Q ss_pred             EEEecCCCeEEEEEccCCceE---EeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        356 VVSGSLDTSIRVWEAESGNLR---HTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       356 l~~~~~dg~i~v~~~~~~~~~---~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      |++|...+.|++|...++.-.   ..+.+|+..|-.++|+   ...|++|+-||+|+|||++.+...             
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-------------  293 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-------------  293 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-------------
Confidence            556666666777776665432   3566799999999997   446666666666666665543211             


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCCCcEEEEECCC---CceeEEecCCCcccccEEE
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVS---GQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~  504 (635)
                                       ..+ ..+.|.+.|+.++|+.+  +|++|++||+++|||++.   +++++.++.   |..+|++
T Consensus       294 -----------------~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---Hk~pIts  352 (440)
T KOG0302|consen  294 -----------------AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---HKAPITS  352 (440)
T ss_pred             -----------------cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---ccCCeeE
Confidence                             122 23789999999999754  899999999999999975   567778877   9999999


Q ss_pred             EEec---CCEEEEEeCCCcEEEEECCCCceeeee-----ccceecCceeEEec--cCceecccccCCC-eEEEEecCCCe
Q psy18018        505 LQFN---SRFVITSSDDGTVKLWDVKTGEFSTPL-----MSSFILNPFYFLIY--SQPLLCPHLQFNS-RFVITSSDDGT  573 (635)
Q Consensus       505 ~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~v~~~~~s~~~-~~l~~~~~d~~  573 (635)
                      +.|+   ...+++++.|.+|.+||+....-....     ..-....|...+.|  ...+.-+.|++.- .+|++.+.|| 
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-  431 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-  431 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence            9995   778999999999999998753321110     01011223333444  4468889999864 5888888888 


Q ss_pred             EEEEe
Q psy18018        574 VKLWD  578 (635)
Q Consensus       574 v~iwd  578 (635)
                      +.||.
T Consensus       432 fnVfk  436 (440)
T KOG0302|consen  432 FNVFK  436 (440)
T ss_pred             eeEEE
Confidence            55554

>KOG2110|consensus

Probab=99.84  E-value=5.2e-18  Score=146.27  Aligned_cols=236  Identities=15%  Similarity=0.200  Sum_probs=181.2

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      +.|..+...|..|+.+| .++|+................|..+-|+..+++..+.+.                       
T Consensus        11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~q-----------------------   66 (391)
T KOG2110|consen   11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQ-----------------------   66 (391)
T ss_pred             eeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCC-----------------------
Confidence            44667788888999888 677877655443333333445666667777766655532                       


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  506 (635)
                              .+.+++++++.+..+..+. ....|.++.++-++|++.=.+. |+|||+++.+.+.++....++...+.+++
T Consensus        67 --------pr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS  136 (391)
T KOG2110|consen   67 --------PRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALS  136 (391)
T ss_pred             --------CceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeec
Confidence                    2446666666665555544 4567888999888887776665 99999999999999887656777788888


Q ss_pred             ec--CCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe-EEEEeCCC
Q psy18018        507 FN--SRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT-VKLWDVKT  581 (635)
Q Consensus       507 ~~--~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-v~iwd~~~  581 (635)
                      ++  +.+++.-+  ..|.|.+||+.+.+....+..           |.+++.+++|+|+|.+|||+++.|+ |||+.+++
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a-----------H~~~lAalafs~~G~llATASeKGTVIRVf~v~~  205 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA-----------HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE  205 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccceeeeEEEe-----------cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC
Confidence            85  45777544  458899999998887666654           8999999999999999999999997 68999999


Q ss_pred             CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        582 GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |+.+.+|+.   +-....|.+++|+||+++|++.+..++  |++|.++-..
T Consensus       206 G~kl~eFRR---G~~~~~IySL~Fs~ds~~L~~sS~TeT--VHiFKL~~~~  251 (391)
T KOG2110|consen  206 GQKLYEFRR---GTYPVSIYSLSFSPDSQFLAASSNTET--VHIFKLEKVS  251 (391)
T ss_pred             ccEeeeeeC---CceeeEEEEEEECCCCCeEEEecCCCe--EEEEEecccc
Confidence            999999974   334568999999999999999999999  7888877543

>KOG4328|consensus

Probab=99.83  E-value=1.2e-18  Score=154.09  Aligned_cols=275  Identities=13%  Similarity=0.184  Sum_probs=198.4

Q ss_pred             cCCCceEEEEecC--cEEEEecCCCeEEEEEccCC----ceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEcc
Q psy18018        341 THVPDLFGFQFDG--VHVVSGSLDTSIRVWEAESG----NLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       341 ~~~~~~~~~s~~~--~~l~~~~~dg~i~v~~~~~~----~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~  411 (635)
                      ...+.+++|+|..  +.+++|...|+|-+||+.+.    .-+..+..|..+|.++.|+   .+.+++.+.||+|++-|++
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~  265 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE  265 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence            3456678899943  57899999999999999532    3456788999999999997   5689999999999999998


Q ss_pred             CCcceeEEE-----------EEeeCCcEEEEEeCCCcEEEEeCCCCce-eeeeccCCccEEEEEec---CCEEEEEeCCC
Q psy18018        412 SGTKKLMFR-----------ICLFDGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMELR---NNILVSGNADS  476 (635)
Q Consensus       412 ~~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~---~~~l~s~~~dg  476 (635)
                      .........           -++.+...++.++.=|...+||++++.. ...+.-|...|..++++   +.++++++.|+
T Consensus       266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence            763222211           1445666777777777999999998654 66777898999999986   56999999999


Q ss_pred             cEEEEECCCCceeEE-ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC----CCceeeeeccceecCceeEEec
Q psy18018        477 TVKVWDIVSGQCLQT-LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK----TGEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       477 ~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~  549 (635)
                      +.+|||++.-...+. +-....|...|.+..|  ++..|++.+.|..|+|||..    ..+....+......     ..|
T Consensus       346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t-----~Rw  420 (498)
T KOG4328|consen  346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT-----GRW  420 (498)
T ss_pred             ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc-----ccc
Confidence            999999986543332 2223348889999888  34459999999999999984    22222222110000     001


Q ss_pred             cCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEE-EEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWR-IRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~-l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                       -.....+|.||..++++|-.-..|-|+|-+.++++..+.    .+....|.+ ..|+|-+..+++|+..+-   ++|+|
T Consensus       421 -lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~----~P~~~tI~~vn~~HP~~~~~~aG~~s~G---ki~vf  492 (498)
T KOG4328|consen  421 -LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH----DPESSTIPSVNEFHPMRDTLAAGGNSSG---KIYVF  492 (498)
T ss_pred             -ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc----CccccccccceeecccccceeccCCccc---eEEEE
Confidence             134556899999999999999999999999888787763    222323443 468998886666655542   46665

>KOG0270|consensus

Probab=99.82  E-value=3.6e-19  Score=156.87  Aligned_cols=219  Identities=21%  Similarity=0.332  Sum_probs=156.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcccee---ecc------------------ccceeEEeeec--cCCCEEEEEeCCCcEEEE
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLH---AEL------------------QETEVELSHGY--ALRSRIVSGSDDNTLKVW  208 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~---~~~------------------~~~~~~~~~~~--~~~~~l~~~~~dg~i~vw  208 (635)
                      |+++|.|+.|..|.|||++-...+.   .+.                  ++...+..+.+  ...+.|++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            6799999999999999987432111   000                  11111111222  225789999999999999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018        209 SATTGKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI  285 (635)
Q Consensus       209 d~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (635)
                      |+.++++..++..|.+.|.++.|.   +..|++|+.|+++.+.|.+....                              
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------------------------------  321 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------------------------------  321 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------------------------------
Confidence            999999999999999999999994   78999999999999999764110                              


Q ss_pred             eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCe
Q psy18018        286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTS  364 (635)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~  364 (635)
                                               ....|++.                       .....++|.| ....+++++.||.
T Consensus       322 -------------------------s~~~wk~~-----------------------g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  322 -------------------------SGKEWKFD-----------------------GEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             -------------------------cCceEEec-----------------------cceEEEEecCCCceeEEEecCCce
Confidence                                     01111111                       2223345666 4456888999999


Q ss_pred             EEEEEccCC-ceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeE---------EEE--Eee-CCcE
Q psy18018        365 IRVWEAESG-NLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLM---------FRI--CLF-DGVH  428 (635)
Q Consensus       365 i~v~~~~~~-~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~--~~~-~~~~  428 (635)
                      ++-+|++.. +++.+++.|.++|.+++++   +.++++++.|+.+++|++........         ...  +.| ....
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~  433 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT  433 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence            999999865 8999999999999999997   77999999999999999875543211         111  112 2335


Q ss_pred             EEEEeCCCcEEEEeCCCCce
Q psy18018        429 VVSGSLDTSIRVWEAESGNL  448 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~  448 (635)
                      ++.|+..+.+++||+.+...
T Consensus       434 la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  434 LAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             EEecCccceEEEeecccChh
Confidence            66666666777777766543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=2.1e-15  Score=151.46  Aligned_cols=347  Identities=33%  Similarity=0.566  Sum_probs=247.1

Q ss_pred             EeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc-ceeeccccc--eeEEeee-ccCCC-EEEEEeC-CCcEEEE
Q psy18018        137 VLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE-CLHAELQET--EVELSHG-YALRS-RIVSGSD-DNTLKVW  208 (635)
Q Consensus       137 ~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~--~~~~~~~-~~~~~-~l~~~~~-dg~i~vw  208 (635)
                      .+..|...+.++.+  .+..++.++.|+.+.+|+...+. ....+....  ....... ..... .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            45689999999999  78889999999999999999886 444444422  1222221 33333 3444344 7888888


Q ss_pred             ECCC-CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        209 SATT-GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       209 d~~~-~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      +... ......+..|...|..+.                                                         
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~---------------------------------------------------------  162 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLA---------------------------------------------------------  162 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEE---------------------------------------------------------
Confidence            8877 666667777777666554                                                         


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC-CCeEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL-DTSIR  366 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~  366 (635)
                                                                                   ++|++..++.++. ++.++
T Consensus       163 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~  181 (466)
T COG2319         163 -------------------------------------------------------------FSPDGKLLASGSSLDGTIK  181 (466)
T ss_pred             -------------------------------------------------------------ECCCCCEEEecCCCCCceE
Confidence                                                                         5555555666654 77788


Q ss_pred             EEEccCCceEEeeeCCCcceeEEEEeC--C-EEEEEeCCCcEEEEEccCCcceeE---------EEEEeeCCcEEEEEeC
Q psy18018        367 VWEAESGNLRHTLMGHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGTKKLM---------FRICLFDGVHVVSGSL  434 (635)
Q Consensus       367 v~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~l~~~~~  434 (635)
                      +|+...+..+..+.+|...+.++++.+  . .+++++.|+.+++||...+.....         ...+++++..+++++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (466)
T COG2319         182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS  261 (466)
T ss_pred             EEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecC
Confidence            888777777777777888888888873  2 444448889999997764433321         1257788888889999


Q ss_pred             CCcEEEEeCCCCce-eeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec--C
Q psy18018        435 DTSIRVWEAESGNL-RHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--S  509 (635)
Q Consensus       435 d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~  509 (635)
                      |+.+++|+...... ...+.+|...+.++.+.+  ..+++++.|+.+.+|+........... ...|...+..+.+.  +
T Consensus       262 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  340 (466)
T COG2319         262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDG  340 (466)
T ss_pred             CCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCC
Confidence            99999999987664 444567888999888865  677778889999999998877666665 12255567777772  1


Q ss_pred             CEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE-ecCCCeEEEEeCCCCceEEe
Q psy18018        510 RFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT-SSDDGTVKLWDVKTGEFIRN  587 (635)
Q Consensus       510 ~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~v~iwd~~~~~~~~~  587 (635)
                      ..++.+ ..|+.+.+|+............            ...+..+.+++ ...+.. +..++.+.+|+.........
T Consensus       341 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (466)
T COG2319         341 SLLVSGGSDDGTIRLWDLRTGKPLKTLEG------------HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRN  407 (466)
T ss_pred             CEEEEeecCCCcEEeeecCCCceeEEecC------------CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeee
Confidence            455555 6889999999988762221111            11277788888 443443 68899999999999888777


Q ss_pred             eeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        588 LVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       588 ~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ..     .+...+....+++++..++.++.++.
T Consensus       408 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
T COG2319         408 LD-----GHTSRVTSLDFSPDGKSLASGSSDNT  435 (466)
T ss_pred             cc-----CCCCcEEEEEECCCCcEEEEecCCCc
Confidence            63     22278999999999999999888887

>KOG1963|consensus

Probab=99.82  E-value=7.4e-17  Score=155.09  Aligned_cols=446  Identities=16%  Similarity=0.134  Sum_probs=260.2

Q ss_pred             eeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEE
Q psy18018          9 NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQ   88 (635)
Q Consensus         9 ~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~   88 (635)
                      .+.+.+....+.|.+|..++ +.+.+-|.. +.-.|+.+.+.+        ..+.+||...+++++++.-+-. + .++.
T Consensus        41 VyS~~Tg~~i~~l~~~~a~l-~s~~~~~~~-~~~~~~~~~sl~--------G~I~vwd~~~~~Llkt~~~~~~-v-~~~~  108 (792)
T KOG1963|consen   41 VYSTATGECITSLEDHTAPL-TSVIVLPSS-ENANYLIVCSLD--------GTIRVWDWSDGELLKTFDNNLP-V-HALV  108 (792)
T ss_pred             EEecchHhhhhhcccccCcc-ceeeecCCC-ccceEEEEEecC--------ccEEEecCCCcEEEEEEecCCc-e-eEEE
Confidence            34455555567999999999 899999653 212444455543        3444699999999999886644 3 3444


Q ss_pred             Ec-----CCEEEEeeCCCcEEEEECCCCcEEEEEe--eCCCcEEEEeCCC--CeEEEEeeCCCcceEEEEe-cCCEEEEE
Q psy18018         89 FS-----GSRIVSGSDDNTLKVWSATTGKCLLVSG--SRDATLRVWHIES--GECLHVLVGHLAAVRCVQY-DGKLVVSG  158 (635)
Q Consensus        89 ~s-----~~~l~s~~~d~~v~vWd~~~~~~ll~~~--~~dg~i~vwd~~~--~~~~~~l~~h~~~v~~l~~-~~~~l~s~  158 (635)
                      +.     ....+..+.+.          ...+.+.  ...+.++-+.+.+  ......+.+|.. -.+|.+ .+..+...
T Consensus       109 ~~~~~a~~s~~~~~s~~~----------~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen  109 YKPAQADISANVYVSVED----------YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI  177 (792)
T ss_pred             echhHhCccceeEeeccc----------ceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence            42     11122111111          0111111  1112222222221  122223334433 245555 44445555


Q ss_pred             eCCCeEEEEeCCCcccee---e--ccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC----CeEEEEEeCCCCCeEEE
Q psy18018        159 AYDYMVKIWNPDTEECLH---A--ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT----GKCLRTLIGHTGGVWSS  229 (635)
Q Consensus       159 ~~dg~v~iwd~~~~~~~~---~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~  229 (635)
                      .-+..+.+|+...+....   .  ..+.....+....+.+++++++..||.|.+|.-..    ....+.+.-|...|.++
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence            556678888887754111   1  11112234455667788999999999999997433    12335677899999999


Q ss_pred             Ee--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHh
Q psy18018        230 QM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR  307 (635)
Q Consensus       230 ~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (635)
                      +|  +|.+|++||..|.+.+|.+.++....                                                  
T Consensus       258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--------------------------------------------------  287 (792)
T KOG1963|consen  258 SFSSDGAYLLSGGREGVLVLWQLETGKKQF--------------------------------------------------  287 (792)
T ss_pred             EEecCCceEeecccceEEEEEeecCCCccc--------------------------------------------------
Confidence            99  59999999999999999988754211                                                  


Q ss_pred             hcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCC-----
Q psy18018        308 AAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-----  382 (635)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-----  382 (635)
                                                   .+..+....-+.++||+...+....|..|.+....+.+....+.+-     
T Consensus       288 -----------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~  338 (792)
T KOG1963|consen  288 -----------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP  338 (792)
T ss_pred             -----------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence                                         1122334445678999999999999999999988766544443322     


Q ss_pred             ------CcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc
Q psy18018        383 ------QSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  454 (635)
Q Consensus       383 ------~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  454 (635)
                            .+-.+.++++  .+.++..+..|.|.+||+.+.+....+.++..+..     ..|+.+.               
T Consensus       339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~-----~~~~n~~---------------  398 (792)
T KOG1963|consen  339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS-----DGDVNIQ---------------  398 (792)
T ss_pred             cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeeccc-----CCcceeE---------------
Confidence                  2334445555  34666667777777777766655544443321100     0000011               


Q ss_pred             CCccEEEEEe--cCCEEEEEe--------CC--CcEEEEECCCCc----eeEEecCCCcccccEEEEEe----cCCEEEE
Q psy18018        455 HQSLTSGMEL--RNNILVSGN--------AD--STVKVWDIVSGQ----CLQTLSGRNKHQSAVTCLQF----NSRFVIT  514 (635)
Q Consensus       455 ~~~~v~~~~~--~~~~l~s~~--------~d--g~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~----~~~~l~~  514 (635)
                        -.++++..  .+.++++.-        .|  -.+++|-.....    ....+..  +|.....+.++    ....+++
T Consensus       399 --v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~--PH~~~~vat~~~~~~rs~~~vt  474 (792)
T KOG1963|consen  399 --VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN--PHGNAFVATIFLNPTRSVRCVT  474 (792)
T ss_pred             --EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec--CCCceeEEEEEecCcccceeEE
Confidence              11222211  244444432        22  347788665433    2233332  36555555555    2348999


Q ss_pred             EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       515 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                      ++.||.+++|-+...+.+.+......... ....|..++++++|+.||.+|+ .+.|++|.+||..+.
T Consensus       475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTK  540 (792)
T ss_pred             eccCCeEEEEEEecccccCcCccceEEee-eeccccCcccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence            99999999999966554433322211111 1223788999999999998776 556889999999883

>KOG0322|consensus

Probab=99.82  E-value=5.5e-19  Score=144.85  Aligned_cols=283  Identities=15%  Similarity=0.206  Sum_probs=191.2

Q ss_pred             eEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeecc-ccceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018        133 ECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  210 (635)
                      .+...|++|.+.|+++.| ...+|.+|..-|.|++|++++.+....+. .+.......-.-+++.+.+-+.|+.+.+|++
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            456778899999999999 66679999999999999999988777666 3444444444556689999999999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCce-eEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccc
Q psy18018        211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDR-TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP  289 (635)
Q Consensus       211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (635)
                      .-+..+.   .|+-.+.++.|...-+...+... ..-.++-+.....  ...+.                         +
T Consensus        85 a~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~--h~~D~-------------------------g  134 (323)
T KOG0322|consen   85 AYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET--HKQDG-------------------------G  134 (323)
T ss_pred             cCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchh--hhhcc-------------------------C
Confidence            8755443   35555666666544444433322 1111111110000  00000                         0


Q ss_pred             cceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe---cC--cEEEEecCCCe
Q psy18018        290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF---DG--VHVVSGSLDTS  364 (635)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~--~~l~~~~~dg~  364 (635)
                      ....   +...+                                   .........++++..   ++  -++++|.++|.
T Consensus       135 ~~tq---v~i~d-----------------------------------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsgh  176 (323)
T KOG0322|consen  135 DTTQ---VQIAD-----------------------------------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGH  176 (323)
T ss_pred             ccce---eEccC-----------------------------------chhccccCceeeeeccccccceEEEEEeccCCe
Confidence            0000   00000                                   011112222333331   22  24678889999


Q ss_pred             EEEEEccCCce----------EEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee----EE---------
Q psy18018        365 IRVWEAESGNL----------RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL----MF---------  419 (635)
Q Consensus       365 i~v~~~~~~~~----------~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~---------  419 (635)
                      +.+||+.++..          ......|..+|.++.+.  -+.=++++.+..+..|.++......    ..         
T Consensus       177 vv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g  256 (323)
T KOG0322|consen  177 VVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG  256 (323)
T ss_pred             EEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc
Confidence            99999998743          33445788999999986  3455677888888899876542111    11         


Q ss_pred             EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEEC
Q psy18018        420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDI  483 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~  483 (635)
                      ...-||++.++++++|+.|++|..++..++..++-|...|++++|++  +++|+++.|++|.+|++
T Consensus       257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            12568999999999999999999999999999999999999999965  59999999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.8e-15  Score=151.93  Aligned_cols=363  Identities=36%  Similarity=0.608  Sum_probs=242.1

Q ss_pred             cccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC-CCceeeccCc-ceEEEEEE-c--CC-E
Q psy18018         20 VLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK-DPKVLKGHDD-HVITCLQF-S--GS-R   93 (635)
Q Consensus        20 ~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~-~~~~l~~h~~-~vi~~~~~-s--~~-~   93 (635)
                      .+.+|...+ .++.|.    +.+..++.++.+        ..+.+|+..... ....+.++.. .+ ..+.+ +  +. +
T Consensus        60 ~~~~~~~~i-~~~~~~----~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  125 (466)
T COG2319          60 LLRGHEDSI-TSIAFS----PDGELLLSGSSD--------GTIKLWDLDNGEKLIKSLEGLHDSSV-SKLALSSPDGNSI  125 (466)
T ss_pred             eeeeccceE-EEEEEC----CCCcEEEEecCC--------CcEEEEEcCCCceeEEEEeccCCCce-eeEEEECCCcceE
Confidence            577999998 999999    899999988743        344469988876 6666776443 33 44444 3  43 3


Q ss_pred             EEEeeC-CCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC-CCeEEEEeC
Q psy18018         94 IVSGSD-DNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY-DYMVKIWNP  169 (635)
Q Consensus        94 l~s~~~-d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~-dg~v~iwd~  169 (635)
                      ++..+. |+.+.+||...                    .......+..|...|..++|  ++..+++++. |+.+++|+.
T Consensus       126 ~~~~~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (466)
T COG2319         126 LLASSSLDGTVKLWDLST--------------------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL  185 (466)
T ss_pred             EeccCCCCccEEEEEecC--------------------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEc
Confidence            333333 56666665542                    15677888899999999999  7778888885 999999999


Q ss_pred             CCccceeeccccceeEEeeeccC-CC-EEEEEeCCCcEEEEECCCCeEEE-EEeCCCCCeEEEEeeCCEEEEeeCceeEE
Q psy18018        170 DTEECLHAELQETEVELSHGYAL-RS-RIVSGSDDNTLKVWSATTGKCLR-TLIGHTGGVWSSQMAGNIIISGSTDRTLK  246 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~~~dg~i~  246 (635)
                      ..+..+..+..+........+.+ +. .+++++.|+.+++||...+..+. .+.+|.... ..                 
T Consensus       186 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-----------------  247 (466)
T COG2319         186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-----------------  247 (466)
T ss_pred             CCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-----------------
Confidence            98777776666544444444433 33 34444888888888877666665 455554432 11                 


Q ss_pred             EecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchh
Q psy18018        247 GWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR  326 (635)
Q Consensus       247 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (635)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (466)
T COG2319         248 --------------------------------------------------------------------------------  247 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce-EEeeeCCCcceeEEEEeCCEEEEEeCCCcE
Q psy18018        327 EKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMELRNNILVSGNADSTV  405 (635)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i  405 (635)
                                           .|++++..+++++.++.+++|+...... ...+..|...+.++.+.+            
T Consensus       248 ---------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------  294 (466)
T COG2319         248 ---------------------SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP------------  294 (466)
T ss_pred             ---------------------eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC------------
Confidence                                 2556666667777788888888775554 333356666777776653            


Q ss_pred             EEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec--cCCccEEEEEecC--CEEEEE-eCCCcEEE
Q psy18018        406 KVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELRN--NILVSG-NADSTVKV  480 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~--~~l~s~-~~dg~i~i  480 (635)
                                         ++..+++++.|+.+.+|+..+........  .|...+..+.+.+  ..++.+ ..|+.+.+
T Consensus       295 -------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  355 (466)
T COG2319         295 -------------------DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL  355 (466)
T ss_pred             -------------------CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence                               23334444445555666555555444443  6666677777621  345555 68899999


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEecC-CEEEE-EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNS-RFVIT-SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      |+............   . ..+..+.+.. ..... +..++.+.+|+..............           ..+....+
T Consensus       356 ~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  420 (466)
T COG2319         356 WDLRTGKPLKTLEG---H-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-----------SRVTSLDF  420 (466)
T ss_pred             eecCCCceeEEecC---C-ceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccCCC-----------CcEEEEEE
Confidence            99988773333332   1 1155565532 23333 6889999999999887666554321           67888889


Q ss_pred             cCCCeEEEEecCCCeEEEEeCCC
Q psy18018        559 QFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       559 s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ++++.+++.++.++.+++|+..+
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         421 SPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEeccC
Confidence            99999999999999999999988

>KOG2919|consensus

Probab=99.82  E-value=5.6e-18  Score=143.18  Aligned_cols=258  Identities=20%  Similarity=0.315  Sum_probs=191.3

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCc------------eEEeee-CCCcceeEEEEe---------CCEEEEEeCC
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGN------------LRHTLM-GHQSLTSGMELR---------NNILVSGNAD  402 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~------------~~~~~~-~~~~~v~~l~~~---------~~~l~s~~~d  402 (635)
                      ....|+|||..|++-+.|..+.+|++...-            ....++ .....|..-+|-         ..++++.+.+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            345699999999999999999999975211            011111 122345555552         4588999999


Q ss_pred             CcEEEEEccCCcceeEEE--------------EEeeCCcEEEEEeCCCcEEEEeC-CCCcee--eee-----ccCCccEE
Q psy18018        403 STVKVWDIVSGTKKLMFR--------------ICLFDGVHVVSGSLDTSIRVWEA-ESGNLR--HTL-----MGHQSLTS  460 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~--------------~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~--~~~-----~~~~~~v~  460 (635)
                      .-|.+||.-+++....+.              .|+|||..|++| ..+.|++||+ +.|...  ...     .+..+.+.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            999999999987655444              489999999887 5678999999 444321  111     23356777


Q ss_pred             EEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCc-eee
Q psy18018        461 GMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVKTGE-FST  533 (635)
Q Consensus       461 ~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~~~~-~~~  533 (635)
                      +++++   ...++.++....+-||.-...+++..+.+   |.+.|+.+.|  +|+.|++|+. |-.|..||++.-. .+.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            88875   45899999999999999888999998887   9999999999  7889998884 6789999998643 233


Q ss_pred             eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEE
Q psy18018        534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVC  612 (635)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  612 (635)
                      .+..+....       ++. .-....|++++|++|+.||.|++||+++ |+....+     ..+...+..+++.|--.++
T Consensus       289 ~L~rhv~~T-------NQR-I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-----~~~sd~vNgvslnP~mpil  355 (406)
T KOG2919|consen  289 ALERHVGDT-------NQR-ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-----GNYSDTVNGVSLNPIMPIL  355 (406)
T ss_pred             hhhhhccCc-------cce-EEEecCCCCceeeccCCCccEEEEecCCCCCccccc-----ccccccccceecCccccee
Confidence            333321100       111 1234568999999999999999999998 7766666     5788899999999998899


Q ss_pred             EEccCCC
Q psy18018        613 AVGSRNG  619 (635)
Q Consensus       613 ~~~~~dg  619 (635)
                      |+++...
T Consensus       356 atssGqr  362 (406)
T KOG2919|consen  356 ATSSGQR  362 (406)
T ss_pred             eeccCce
Confidence            8887754

>KOG1517|consensus

Probab=99.81  E-value=4.1e-18  Score=166.25  Aligned_cols=276  Identities=20%  Similarity=0.305  Sum_probs=198.4

Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC---cceeEEEEe----CCEEEEEeCCCcEEEEEccCC--
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ---SLTSGMELR----NNILVSGNADSTVKVWDIVSG--  413 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~---~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~--  413 (635)
                      .+..+.|+|-...++++...-.|++||.+.++.+..+..+.   ..|+.+.+-    ..++++++.||.|++|+-...  
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            46677889988899999988899999999999887776554   477788773    458999999999999975433  


Q ss_pred             cceeEEEEE-------------------eeCCcEEEEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEe---cCCEEE
Q psy18018        414 TKKLMFRIC-------------------LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMEL---RNNILV  470 (635)
Q Consensus       414 ~~~~~~~~~-------------------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~---~~~~l~  470 (635)
                      +.......+                   .....+|++++.-..|++||.........+.. ....+++++.   .++.++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence            222222211                   11334566666689999999998777766654 4457778776   478999


Q ss_pred             EEeCCCcEEEEECCCCceeEEecCCCccccc--EEEEEec--CC-EEEEEeCCCcEEEEECCCCceeeeeccceecCcee
Q psy18018        471 SGNADSTVKVWDIVSGQCLQTLSGRNKHQSA--VTCLQFN--SR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY  545 (635)
Q Consensus       471 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  545 (635)
                      +|..||.|++||.+...+-..+.....|...  |..+.+.  |- -|++|+.||.|++||++.......+...      .
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv------~ 1299 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV------A 1299 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee------e
Confidence            9999999999998865442222222225555  8778773  33 5999999999999999975322222111      0


Q ss_pred             EEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC--CCCCceEEEEEeCCCCeEEEEccCCCeeEe
Q psy18018        546 FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS--GGSGGVVWRIRASETKLVCAVGSRNGTEET  623 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~  623 (635)
                      .-.+.+..+++..+++...+|+|+. +.|+||++. |+.+..++..+.  ....+.+.+|+|+|-..+||+|+.|.+  |
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~--V 1375 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST--V 1375 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce--E
Confidence            0112346899999999999999998 999999976 666666553321  233467899999999999999999998  5


Q ss_pred             EEEEE
Q psy18018        624 KLLVL  628 (635)
Q Consensus       624 ~l~~~  628 (635)
                      .||.-
T Consensus      1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred             EEeec
Confidence            55543

>KOG0302|consensus

Probab=99.81  E-value=1.2e-18  Score=150.21  Aligned_cols=220  Identities=18%  Similarity=0.284  Sum_probs=162.7

Q ss_pred             CCCcceeEEEEe----CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018        381 GHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  456 (635)
Q Consensus       381 ~~~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  456 (635)
                      +|.+.++.+...    ..+.++-+..|.|.+|++...-.               +-+..+.. +-+ ...+++.++.+|.
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------------~l~~~~~~-~~~-s~~~Pl~t~~ghk  211 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------------ALSEPGLE-VKD-SEFRPLFTFNGHK  211 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------------hhcCcccc-ccc-cccCceEEecccC
Confidence            455555544443    34666667788888888764211               11111111 111 3467888999999


Q ss_pred             ccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        457 SLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       457 ~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      ..-.++.|++   ..|++|.--+.|++|...++.-...-.....|...|-.++|   ....|+++|-||+|+|||++.+.
T Consensus       212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~  291 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP  291 (440)
T ss_pred             ccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence            9889999976   36888888899999999987644333333349999999999   47899999999999999999885


Q ss_pred             eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC---CceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT---GEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      ....         +...+|...|+.+.|+.+-.+||+|+.||+++|||++.   ++.+..+     ..|..+|+++.|+|
T Consensus       292 ~~~~---------~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-----k~Hk~pItsieW~p  357 (440)
T KOG0302|consen  292 KKAA---------VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-----KYHKAPITSIEWHP  357 (440)
T ss_pred             ccce---------eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-----EeccCCeeEEEecc
Confidence            3222         22356899999999999988999999999999999975   5667777     57999999999998


Q ss_pred             C-CeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        608 T-KLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       608 d-~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      . ...+++++.|..  +.||-+-.+.|
T Consensus       358 ~e~s~iaasg~D~Q--itiWDlsvE~D  382 (440)
T KOG0302|consen  358 HEDSVIAASGEDNQ--ITIWDLSVEAD  382 (440)
T ss_pred             ccCceEEeccCCCc--EEEEEeeccCC
Confidence            5 457788888877  66777666665

>KOG0322|consensus

Probab=99.81  E-value=7.6e-19  Score=144.05  Aligned_cols=284  Identities=18%  Similarity=0.207  Sum_probs=183.0

Q ss_pred             CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc-CCE
Q psy18018         15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS-GSR   93 (635)
Q Consensus        15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s-~~~   93 (635)
                      ..++..|++|...| +|+.|-    .+++ |.++...        ..+++|+.++.+.+..+++|....|+.+.-- +..
T Consensus         4 PdP~fvLRp~~~~v-~s~~fq----a~~r-L~sg~~~--------G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~   69 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSV-TSVLFQ----ANER-LMSGLSV--------GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS   69 (323)
T ss_pred             CCCeeEeccccchh-eehhhc----cchh-hhccccc--------ceEEEEEeecCccchhhhhhccceeeceeecCCcc
Confidence            34557899999999 999999    7777 5566543        3445699999999999996655555777666 788


Q ss_pred             EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCC-eEEEEe----
Q psy18018         94 IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDY-MVKIWN----  168 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg-~v~iwd----  168 (635)
                      |.+-+.|..+.+|++.-+..+                        .-|.-.++++.|-..-+...+... ..-.++    
T Consensus        70 l~tqgRd~~L~lw~ia~s~~i------------------------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs  125 (323)
T KOG0322|consen   70 LDTQGRDPLLILWTIAYSAFI------------------------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS  125 (323)
T ss_pred             hhhcCCCceEEEEEccCcceE------------------------EEeeeeccccccccceeccCCCcchhheecCCccc
Confidence            999999999999998753322                        112222333333111111111000 000010    


Q ss_pred             -----CCCccceee--c----cccceeEEeee--cc--CCCEEEEEeCCCcEEEEECCCCeE----------EEEEeCCC
Q psy18018        169 -----PDTEECLHA--E----LQETEVELSHG--YA--LRSRIVSGSDDNTLKVWSATTGKC----------LRTLIGHT  223 (635)
Q Consensus       169 -----~~~~~~~~~--~----~~~~~~~~~~~--~~--~~~~l~~~~~dg~i~vwd~~~~~~----------~~~~~~h~  223 (635)
                           .+.+.....  .    ........+..  +.  ..-.+++|.++|.+.+||+.++..          ......|.
T Consensus       126 de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~  205 (323)
T KOG0322|consen  126 DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK  205 (323)
T ss_pred             chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc
Confidence                 011111100  0    00011111111  11  123678899999999999998733          33445799


Q ss_pred             CCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        224 GGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       224 ~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      .+|.++.++  -+.=++|+.+..+..|++........          .+.                              
T Consensus       206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq----------~~~------------------------------  245 (323)
T KOG0322|consen  206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ----------IRK------------------------------  245 (323)
T ss_pred             CcceeeeechhhcCCcCCCccccceeeeeccccCccc----------ccc------------------------------
Confidence            999999996  34556778888888888765321100          000                              


Q ss_pred             chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC
Q psy18018        302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  381 (635)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  381 (635)
                                                        ..........-+.+.||++.+|+++.|+.||+|+.++.+++..++-
T Consensus       246 ----------------------------------e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky  291 (323)
T KOG0322|consen  246 ----------------------------------EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY  291 (323)
T ss_pred             ----------------------------------eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh
Confidence                                              0011122333456899999999999999999999999999999999


Q ss_pred             CCcceeEEEEeC--CEEEEEeCCCcEEEEEc
Q psy18018        382 HQSLTSGMELRN--NILVSGNADSTVKVWDI  410 (635)
Q Consensus       382 ~~~~v~~l~~~~--~~l~s~~~dg~i~iwd~  410 (635)
                      |...|++++|++  +.+++++.|+.|.+|++
T Consensus       292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999984  58889999999999975

>KOG1188|consensus

Probab=99.80  E-value=2.3e-18  Score=146.72  Aligned_cols=271  Identities=17%  Similarity=0.251  Sum_probs=187.1

Q ss_pred             cEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe----CCEEEEEeCCCcEEEEEccCCcceeEEEE--------
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGTKKLMFRI--------  421 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------  421 (635)
                      ..++++...|.|++||..+++.+..++++...++.+.|.    +..+.+++.||+|++||++.......+..        
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            568899999999999999999999999999999988885    56999999999999999987654433332        


Q ss_pred             --Eee--CCcEEEEEe----CCCcEEEEeCCCCce-eeee-ccCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCce
Q psy18018        422 --CLF--DGVHVVSGS----LDTSIRVWEAESGNL-RHTL-MGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQC  488 (635)
Q Consensus       422 --~~~--~~~~l~~~~----~d~~i~~~d~~~~~~-~~~~-~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~  488 (635)
                        +..  +++.+++|+    .+-.+.+||++..+. +..+ ..|...|+++.|+   +++|++|+.||.|.+||++....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence              222  445566654    355799999998655 4444 4699999999994   67999999999999999975432


Q ss_pred             eEEecCCCcccccEEEEEec-C--CEEEEEeCCCcEEEEECCCCceeeeeccceec-CceeEEeccCceecccccCCCeE
Q psy18018        489 LQTLSGRNKHQSAVTCLQFN-S--RFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL-NPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       489 ~~~~~~~~~~~~~v~~~~~~-~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                      -..+...-.+...|.++.|. .  +.+.+-+...+..+|+++.+.....+...... ..........-+.......+...
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~  280 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT  280 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence            22222111267789999993 2  36889999999999999988755544332110 00000000001111111125556


Q ss_pred             EEEecC-CCeEEEEeC---CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        565 VITSSD-DGTVKLWDV---KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       565 l~~~~~-d~~v~iwd~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      .++++. .+...++-+   .++..+..... ..++|...|.++.|.-.+.+|.+|++||.  +.+|.
T Consensus       281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~-l~g~~~eiVR~i~~~~~~~~l~TGGEDG~--l~~Wk  344 (376)
T KOG1188|consen  281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAI-LQGGHEEIVRDILFDVKNDVLYTGGEDGL--LQAWK  344 (376)
T ss_pred             EEEeccccCceeEEEeeecccccccCcccc-ccCCcHHHHHHHhhhcccceeeccCCCce--EEEEe
Confidence            666655 566666644   34444333322 22467888999999999999999999998  66665

>KOG1009|consensus

Probab=99.80  E-value=3.8e-17  Score=142.66  Aligned_cols=297  Identities=21%  Similarity=0.313  Sum_probs=177.7

Q ss_pred             ccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cC
Q psy18018         78 GHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DG  152 (635)
Q Consensus        78 ~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~  152 (635)
                      -|....+..+.|.   .+.||||+.|..|++|.+..++.    +..+.        +-+....|..|...|+++.|  +|
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~----~~~~~--------~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP----GGGDM--------KVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCC----CCCce--------eEEEeecccCCcceeEEEEEcCCc
Confidence            3444445788887   44899999999999999876542    11111        11456678899999999999  78


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA  232 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  232 (635)
                      ..||||+.+|.|.+|-...-...                        ..|.... -+-+.....+.+.+|...|+.++| 
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~------------------------~~d~e~~-~~ke~w~v~k~lr~h~~diydL~W-  131 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIF------------------------DADTEAD-LNKEKWVVKKVLRGHRDDIYDLAW-  131 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCc------------------------cccchhh-hCccceEEEEEecccccchhhhhc-
Confidence            89999999999999976541100                        0000000 001123344566778877777765 


Q ss_pred             CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccc
Q psy18018        233 GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTC  312 (635)
Q Consensus       233 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (635)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (434)
T KOG1009|consen  132 --------------------------------------------------------------------------------  131 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe
Q psy18018        313 RSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  392 (635)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~  392 (635)
                                                           +|+++++++++.|..+++||+..|+....+..|...+..++|+
T Consensus       132 -------------------------------------s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen  132 -------------------------------------SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             -------------------------------------cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecc
Confidence                                                 4444444444444444445544444444444455445555444


Q ss_pred             --CCEEEEEeCCCcEEEE--------------------------------EccCCcceeEEEEEeeCCcEEEEEeC----
Q psy18018        393 --NNILVSGNADSTVKVW--------------------------------DIVSGTKKLMFRICLFDGVHVVSGSL----  434 (635)
Q Consensus       393 --~~~l~s~~~dg~i~iw--------------------------------d~~~~~~~~~~~~~~~~~~~l~~~~~----  434 (635)
                        .+++++-+.|...+.+                                .-++.+.-.....++|+|..+++...    
T Consensus       175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~  254 (434)
T KOG1009|consen  175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV  254 (434)
T ss_pred             hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence              3344444444333333                                22222222223347789988887531    


Q ss_pred             C-----CcEEEEeCCC-CceeeeeccCCccEEEEEec-------------------CC-EEEEEeCCCcEEEEECCCCce
Q psy18018        435 D-----TSIRVWEAES-GNLRHTLMGHQSLTSGMELR-------------------NN-ILVSGNADSTVKVWDIVSGQC  488 (635)
Q Consensus       435 d-----~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~-------------------~~-~l~s~~~dg~i~iwd~~~~~~  488 (635)
                      .     +..++|+-.. .++...+.....++.++.+.                   -+ .++.++. +.+++||.++..+
T Consensus       255 g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P  333 (434)
T KOG1009|consen  255 GGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP  333 (434)
T ss_pred             CCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc
Confidence            1     2234444332 12333444444444333321                   12 3445544 5699999998888


Q ss_pred             eEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        489 LQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFS  532 (635)
Q Consensus       489 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~  532 (635)
                      +.....  -|-..++.++|  ||..|+..|.||...+-.++..++-
T Consensus       334 ~~~v~n--ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  334 LAVVDN--IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             eEEEee--eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            877654  38889999999  6889999999999999888877654

>KOG1538|consensus

Probab=99.80  E-value=4e-17  Score=151.48  Aligned_cols=225  Identities=18%  Similarity=0.303  Sum_probs=171.1

Q ss_pred             eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceee-ccCcceEE
Q psy18018          7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLK-GHDDHVIT   85 (635)
Q Consensus         7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~-~h~~~vi~   85 (635)
                      .+.|++....+.++|+||.+.| .|||+|    .||+..|+|+.++.        +++|..+   ..-.|+ .|.+.+ .
T Consensus        35 lliyD~ndG~llqtLKgHKDtV-ycVAys----~dGkrFASG~aDK~--------VI~W~~k---lEG~LkYSH~D~I-Q   97 (1081)
T KOG1538|consen   35 LLVYDTSDGTLLQPLKGHKDTV-YCVAYA----KDGKRFASGSADKS--------VIIWTSK---LEGILKYSHNDAI-Q   97 (1081)
T ss_pred             EEEEeCCCcccccccccccceE-EEEEEc----cCCceeccCCCcee--------EEEeccc---ccceeeeccCCee-e
Confidence            5788888899999999999999 999999    99999999998654        4469854   344455 566655 9


Q ss_pred             EEEEc--CCEEEEeeCCCcEEEEECCC-------------------CcEEEEEeeCCCcEEEEeCCCCeEEEEe---eCC
Q psy18018         86 CLQFS--GSRIVSGSDDNTLKVWSATT-------------------GKCLLVSGSRDATLRVWHIESGECLHVL---VGH  141 (635)
Q Consensus        86 ~~~~s--~~~l~s~~~d~~v~vWd~~~-------------------~~~ll~~~~~dg~i~vwd~~~~~~~~~l---~~h  141 (635)
                      |+.|+  ...|+|++-. ..-+|....                   ....++.|-.+|+|.+-+- ++++...+   .|.
T Consensus        98 CMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~  175 (1081)
T KOG1538|consen   98 CMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGS  175 (1081)
T ss_pred             EeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCC
Confidence            99999  7888888743 245665432                   2334899999999999874 34443333   357


Q ss_pred             CcceEEEEe-------cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCe
Q psy18018        142 LAAVRCVQY-------DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGK  214 (635)
Q Consensus       142 ~~~v~~l~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  214 (635)
                      .++|.+++|       ....++......++.++.+.....-......-...+...++.+.+++.|+.|+.+.++- +.|-
T Consensus       176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~Gv  254 (1081)
T KOG1538|consen  176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGV  254 (1081)
T ss_pred             CCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCe
Confidence            889999999       23578888888999999887544333333344455667788899999999999999996 5688


Q ss_pred             EEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEeccc
Q psy18018        215 CLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNA  251 (635)
Q Consensus       215 ~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~  251 (635)
                      .+.++......|+.+..  +++.++.|+.||+|..|++.
T Consensus       255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            88888777788888877  57788888888888888754

>KOG2919|consensus

Probab=99.78  E-value=4.4e-17  Score=137.86  Aligned_cols=183  Identities=22%  Similarity=0.354  Sum_probs=134.1

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEc-cCCceEE--ee-----eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcce
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEA-ESGNLRH--TL-----MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~-~~~~~~~--~~-----~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      .+++|+|||.+|++|.. ..|++||+ +.|+...  ..     .+..+.+.++++++                       
T Consensus       162 hsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP-----------------------  217 (406)
T KOG2919|consen  162 HSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSP-----------------------  217 (406)
T ss_pred             eeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccC-----------------------
Confidence            35679999999998875 58999998 4443211  11     12234455555542                       


Q ss_pred             eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeC-CCcEEEEECCC-CceeEEe
Q psy18018        417 LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNA-DSTVKVWDIVS-GQCLQTL  492 (635)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-dg~i~iwd~~~-~~~~~~~  492 (635)
                             .+.+.++.|+....+-+|.-..+.+++.+.+|.+.|+.+.|  +|+.|.+|.. |-.|..||++. ..++..+
T Consensus       218 -------~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  218 -------MDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             -------CCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence                   13446777888888888888889999999999999999998  6778888875 77899999985 4455566


Q ss_pred             cCCCcccc-cEEEEEe----cCCEEEEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEE
Q psy18018        493 SGRNKHQS-AVTCLQF----NSRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI  566 (635)
Q Consensus       493 ~~~~~~~~-~v~~~~~----~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  566 (635)
                      ..   |.. .-..|.|    .+++|++|+.||.|++||+++ +.....+           ..++..++.++++|--.++|
T Consensus       291 ~r---hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-----------~~~sd~vNgvslnP~mpila  356 (406)
T KOG2919|consen  291 ER---HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-----------GNYSDTVNGVSLNPIMPILA  356 (406)
T ss_pred             hh---hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-----------ccccccccceecCcccceee
Confidence            55   433 3344555    599999999999999999998 4433332           34788999999999999999


Q ss_pred             EecCCC
Q psy18018        567 TSSDDG  572 (635)
Q Consensus       567 ~~~~d~  572 (635)
                      |++...
T Consensus       357 tssGqr  362 (406)
T KOG2919|consen  357 TSSGQR  362 (406)
T ss_pred             eccCce
Confidence            887543

>KOG1310|consensus

Probab=99.78  E-value=1.3e-17  Score=151.07  Aligned_cols=161  Identities=22%  Similarity=0.332  Sum_probs=115.2

Q ss_pred             CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEe-eCCCcceE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL-VGHLAAVR  146 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l-~~h~~~v~  146 (635)
                      ..+.++|.||++.| +|++|+  |.+|++||+|-.+.|||+-.                     .++++.+ .||.+.|.
T Consensus        40 L~lE~eL~GH~GCV-N~LeWn~dG~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIF   97 (758)
T KOG1310|consen   40 LDLEAELTGHTGCV-NCLEWNADGELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIF   97 (758)
T ss_pred             cchhhhhcccccee-cceeecCCCCEEeecCCcceEEeecchh---------------------cceeeeeeccccccee
Confidence            35567899999999 999999  99999999999999998763                     3444444 39999999


Q ss_pred             EEEe----cCCEEEEEeCCCeEEEEeCCCccce----------eeccccc-eeEEeeeccCC-CEEEEEeCCCcEEEEEC
Q psy18018        147 CVQY----DGKLVVSGAYDYMVKIWNPDTEECL----------HAELQET-EVELSHGYALR-SRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       147 ~l~~----~~~~l~s~~~dg~v~iwd~~~~~~~----------~~~~~~~-~~~~~~~~~~~-~~l~~~~~dg~i~vwd~  210 (635)
                      ++.|    +...+++|+.|..|+++|+...+.-          .....+. .+...+..+.+ +.+.++++||+|+-+|+
T Consensus        98 svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi  177 (758)
T KOG1310|consen   98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI  177 (758)
T ss_pred             EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence            9999    6789999999999999999853221          1111111 12222233333 68999999999999999


Q ss_pred             CCCeEE-------E---EEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccc
Q psy18018        211 TTGKCL-------R---TLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       211 ~~~~~~-------~---~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~  252 (635)
                      +....-       .   .+...--...++..+   ..+|+.|+.|-..++||.+.
T Consensus       178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            762111       1   111111233555553   67999999999999999643

>KOG1188|consensus

Probab=99.78  E-value=3.9e-18  Score=145.34  Aligned_cols=273  Identities=16%  Similarity=0.262  Sum_probs=165.7

Q ss_pred             EEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe----cCCEEEEEeCCCeEEEEeCCCccceeeccc--cc-eeE
Q psy18018        113 CLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY----DGKLVVSGAYDYMVKIWNPDTEECLHAELQ--ET-EVE  185 (635)
Q Consensus       113 ~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~-~~~  185 (635)
                      ..++++.++|.|++||..+++.+..+++|...++.+.|    .+..+.+|+.||+|++||++......++..  +. ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            45777788888888888889999999999999999999    357899999999999999998765543322  22 122


Q ss_pred             Eeeecc-CCCEEEEEe----CCCcEEEEECCCCeE-EEEE-eCCCCCeEEEEe---eCCEEEEeeCceeEEEecccceee
Q psy18018        186 LSHGYA-LRSRIVSGS----DDNTLKVWSATTGKC-LRTL-IGHTGGVWSSQM---AGNIIISGSTDRTLKGWSNAERIL  255 (635)
Q Consensus       186 ~~~~~~-~~~~l~~~~----~dg~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~---~~~~l~s~~~dg~i~~w~~~~~~~  255 (635)
                      .+.... .++.+++|+    .+-.+.+||++..+. ++.+ ..|.+.|+.+.|   +++.|++|+.||.+.++|......
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            222222 345556554    366899999998766 5554 679999999999   488999999999999999876411


Q ss_pred             eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch--hhHhhc--ccccceeEeecCCcchhhhhhh
Q psy18018        256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE--DLLRAA--QTCRSWRFLAEDNLLWREKCLE  331 (635)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  331 (635)
                      . ..+.                        ........+..+.|..+.  ++....  ..-..|.+...+...|.+....
T Consensus       201 e-DaL~------------------------~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~  255 (376)
T KOG1188|consen  201 E-DALL------------------------HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV  255 (376)
T ss_pred             h-hhHH------------------------HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence            0 0111                        111122222233333222  111111  1122233333333333332222


Q ss_pred             hhhhccccccCCCceEEEEe-cCcEEEEecC-CCeEEEEEcc---CC---ceEEeeeC-CCcceeEEEEe--CCEEEEEe
Q psy18018        332 AATLHRNKKTHVPDLFGFQF-DGVHVVSGSL-DTSIRVWEAE---SG---NLRHTLMG-HQSLTSGMELR--NNILVSGN  400 (635)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~-dg~i~v~~~~---~~---~~~~~~~~-~~~~v~~l~~~--~~~l~s~~  400 (635)
                      .....+.......-+-+.+| +...+++++. -+...++-+.   ++   +.+..+.+ |...|.++.|+  ++++.+|+
T Consensus       256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG  335 (376)
T KOG1188|consen  256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG  335 (376)
T ss_pred             hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence            22222222222223333445 4444444443 4555555433   22   33445555 66677888886  78999999


Q ss_pred             CCCcEEEEEc
Q psy18018        401 ADSTVKVWDI  410 (635)
Q Consensus       401 ~dg~i~iwd~  410 (635)
                      .||.+.+|..
T Consensus       336 EDG~l~~Wk~  345 (376)
T KOG1188|consen  336 EDGLLQAWKV  345 (376)
T ss_pred             CCceEEEEec
Confidence            9999999985

>KOG4227|consensus

Probab=99.77  E-value=4.7e-17  Score=141.25  Aligned_cols=314  Identities=14%  Similarity=0.165  Sum_probs=205.9

Q ss_pred             ceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee-CCCcceEEEEe
Q psy18018         74 KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV-GHLAAVRCVQY  150 (635)
Q Consensus        74 ~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~-~h~~~v~~l~~  150 (635)
                      +-+.+|.+.| +++.||  +++||+|++|..+++|++...-               --++.+++.... .|...|.|++|
T Consensus        50 KD~~~H~GCi-NAlqFS~N~~~L~SGGDD~~~~~W~~de~~---------------~~k~~KPI~~~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   50 KDVREHTGCI-NALQFSHNDRFLASGGDDMHGRVWNVDELM---------------VRKTPKPIGVMEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhhhhcccc-ceeeeccCCeEEeecCCcceeeeechHHHH---------------hhcCCCCceeccCccccceEEEEE
Confidence            4567999998 999999  9999999999999999986311               012446666665 45689999999


Q ss_pred             --cCCEEEEEeCCCeEEEEeCCCccceeeccccc---eeEEeeeccCCCEEEEEeCCCcEEEEECCCCe-EEE--EEeCC
Q psy18018        151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQET---EVELSHGYALRSRIVSGSDDNTLKVWSATTGK-CLR--TLIGH  222 (635)
Q Consensus       151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~--~~~~h  222 (635)
                        ....+.+|..+++|..-|+++.+.+..+....   .+.-.-..+.++.+++.+.++.|.+||.+..+ ...  .+...
T Consensus       114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence              56789999999999999999999888766554   44445556678999999999999999988654 221  12223


Q ss_pred             CCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        223 TGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       223 ~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      .....++.|+   +.+|++.+..+-+-+||.+.......+                      ......+           
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~----------------------~~~~~~L-----------  240 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ----------------------RSMFKGL-----------  240 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHh----------------------hhccccC-----------
Confidence            4455666774   678999999999999997653211100                      0000000           


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                            ......-...-|+|+|+++++--....-.+||+-+.++...-
T Consensus       241 --------------------------------------~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k  282 (609)
T KOG4227|consen  241 --------------------------------------PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK  282 (609)
T ss_pred             --------------------------------------cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence                                                  000001112348888888887766666677887764443222


Q ss_pred             eCCC-------cceeEEEEeC-CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee
Q psy18018        380 MGHQ-------SLTSGMELRN-NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT  451 (635)
Q Consensus       380 ~~~~-------~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  451 (635)
                      ..|.       ..+.+++|-+ ..+++|+.+=.|.+|.+.......-+.         -. +.|..-.--.+--.+....
T Consensus       283 ~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~---------~I-G~~~~~~~~~~~i~~~~~V  352 (609)
T KOG4227|consen  283 SDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFT---------QI-GHDEEEMPSEIFIEKELTV  352 (609)
T ss_pred             ccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCcc---------cc-CcchhhCchhheecceeEE
Confidence            2222       2455666654 357788888889999876432211100         00 1110000000001245667


Q ss_pred             eccCCccEEEEEec--CCEEEEEeCCCcEEEEECC
Q psy18018        452 LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  484 (635)
Q Consensus       452 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  484 (635)
                      +++|.+.++.+.|+  ..+|++.+-.+.++||...
T Consensus       353 LrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  353 LRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             EecccccccceeecCCcceEeccchhhheeccccc
Confidence            89999999999986  4588888899999999753

>KOG1517|consensus

Probab=99.76  E-value=1.3e-16  Score=155.92  Aligned_cols=293  Identities=17%  Similarity=0.272  Sum_probs=187.2

Q ss_pred             eccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC---CCeEEEEe----eCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018        189 GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT---GGVWSSQM----AGNIIISGSTDRTLKGWSNAERILAIGQLI  261 (635)
Q Consensus       189 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~----~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  261 (635)
                      ..+-...++++...-.|++||.+.++.+..|..+.   ..|..+.+    +..++++++.||.||+|+--.....     
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----- 1146 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----- 1146 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC-----
Confidence            33446778888888899999999999988776543   46777777    4668999999999999973221100     


Q ss_pred             cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018        262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT  341 (635)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (635)
                                                    ....+-++.+-.+.+                               ....
T Consensus      1147 ------------------------------~~eLVTaw~~Ls~~~-------------------------------~~~r 1165 (1387)
T KOG1517|consen 1147 ------------------------------KPELVTAWSSLSDQL-------------------------------PGAR 1165 (1387)
T ss_pred             ------------------------------CceeEEeeccccccC-------------------------------ccCC
Confidence                                          000011111111100                               0011


Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCC-CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      ....++.|.....+|++++.-..|++||.........+... ...++++..+                            
T Consensus      1166 ~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~---------------------------- 1217 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD---------------------------- 1217 (1387)
T ss_pred             CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc----------------------------
Confidence            11234556666666777776889999999877766655433 2345555443                            


Q ss_pred             EEeeCCcEEEEEeCCCcEEEEeCCCC---ceeeeeccCCcc--EEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        421 ICLFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGHQSL--TSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~--v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                        ...|+.+++|..||.+++||.+..   ..+...+.|+..  |..+++..  - .|++|+.||.|++||++.......+
T Consensus      1218 --~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1218 --LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             --ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence              123444555555555555555432   345566777776  88888743  2 6999999999999999874222222


Q ss_pred             c--CCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        493 S--GRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       493 ~--~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      .  .+....+..+++..  +...+|+|+. +.|+||++...+ +..++.    .+.+.......+.|++|+|..-++|+|
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~----n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKY----NPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hccccc----CcccccCcCCCcceeeecchhHhhhhc
Confidence            1  11112235888888  5789999998 999999988443 333331    122222345677999999999999999


Q ss_pred             cCCCeEEEEeCCCCc
Q psy18018        569 SDDGTVKLWDVKTGE  583 (635)
Q Consensus       569 ~~d~~v~iwd~~~~~  583 (635)
                      ..|.+|.||.....+
T Consensus      1370 ~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCCceEEEeecCCcC
Confidence            999999999876544

>KOG0307|consensus

Probab=99.76  E-value=9.2e-18  Score=165.90  Aligned_cols=236  Identities=20%  Similarity=0.351  Sum_probs=177.6

Q ss_pred             CCCceEEEEecCcE----EEEecCCCeEEEEEccCC------ceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEE
Q psy18018        342 HVPDLFGFQFDGVH----VVSGSLDTSIRVWEAESG------NLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVW  408 (635)
Q Consensus       342 ~~~~~~~~s~~~~~----l~~~~~dg~i~v~~~~~~------~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iw  408 (635)
                      ....-++|.+.+..    ++.|.+||.|.+||...-      ..+.....|.+.|..+.|+   ++.|++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            34445667775554    888999999999998652      2456678899999999997   4577777777776666


Q ss_pred             EccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee--ccCCccEEEEEecC---CEEEEEeCCCcEEEEEC
Q psy18018        409 DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL--MGHQSLTSGMELRN---NILVSGNADSTVKVWDI  483 (635)
Q Consensus       409 d~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~  483 (635)
                      |+++.+.                                 ....  ......|.+++|+.   +.|++++.+|.+.|||+
T Consensus       145 Dlnn~~t---------------------------------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl  191 (1049)
T KOG0307|consen  145 DLNKPET---------------------------------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL  191 (1049)
T ss_pred             ccCCcCC---------------------------------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence            6654322                                 1111  12456788999964   58999999999999999


Q ss_pred             CCCceeEEecCCCcccccEEEEEec---CCEEEEEeCCC---cEEEEECCCCceeeeeccceecCceeEEeccCceeccc
Q psy18018        484 VSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDG---TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH  557 (635)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  557 (635)
                      +..+++-.+.... ....+..++|+   ...+++++.|.   .|.+||++.........          ..|...|.++.
T Consensus       192 r~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~----------~~H~~Gilsls  260 (1049)
T KOG0307|consen  192 RKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL----------EGHQRGILSLS  260 (1049)
T ss_pred             cCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh----------cccccceeeec
Confidence            9988887777522 22457788894   45677776654   59999988654222211          24899999999


Q ss_pred             ccCCC-eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEE
Q psy18018        558 LQFNS-RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       558 ~s~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~  628 (635)
                      |++.+ ++|++++.|+.|.+|+.+++|.+..+     ....+.+..+.|+|... ++++++-||.  +.||.+
T Consensus       261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~-----p~~~nW~fdv~w~pr~P~~~A~asfdgk--I~I~sl  326 (1049)
T KOG0307|consen  261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL-----PAQGNWCFDVQWCPRNPSVMAAASFDGK--ISIYSL  326 (1049)
T ss_pred             cCCCCchhhhcccCCCCeeEecCCCceEeeec-----CCCCcceeeeeecCCCcchhhhheeccc--eeeeee
Confidence            99966 89999999999999999999999999     56778999999999877 9999999998  444443

>KOG0642|consensus

Probab=99.76  E-value=2.7e-17  Score=149.83  Aligned_cols=267  Identities=21%  Similarity=0.300  Sum_probs=167.1

Q ss_pred             CceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         73 PKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      ..++..|.+.+ ++++|.  ...|++++.||.+++|+++....     +.        -..-+++.+|.+|.++|.|++.
T Consensus       287 k~tl~s~~d~i-r~l~~~~sep~lit~sed~~lk~WnLqk~~~-----s~--------~~~~epi~tfraH~gPVl~v~v  352 (577)
T KOG0642|consen  287 KFTLRSHDDCI-RALAFHPSEPVLITASEDGTLKLWNLQKAKK-----SA--------EKDVEPILTFRAHEGPVLCVVV  352 (577)
T ss_pred             eeeeecchhhh-hhhhcCCCCCeEEEeccccchhhhhhcccCC-----cc--------ccceeeeEEEecccCceEEEEe
Confidence            34778898888 999998  78899999999999999953110     00        0123788999999999999999


Q ss_pred             --cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018        151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  228 (635)
                        +++.+.+|+.||+|+.|++....-.                         .|    .+|  .......+.||.+.|+.
T Consensus       353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp-------------------------~d----s~d--p~vl~~~l~Ghtdavw~  401 (577)
T KOG0642|consen  353 PSNGEHCYSGGIDGTIRCWNLPPNQDP-------------------------DD----SYD--PSVLSGTLLGHTDAVWL  401 (577)
T ss_pred             cCCceEEEeeccCceeeeeccCCCCCc-------------------------cc----ccC--cchhccceeccccceee
Confidence              8999999999999999987522100                         00    011  11233567899999999


Q ss_pred             EEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch-hh
Q psy18018        229 SQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE-DL  305 (635)
Q Consensus       229 ~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  305 (635)
                      ++++  ...|++++.||+++.|+.............                           .......+.+.... ..
T Consensus       402 l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~---------------------------e~g~Plsvd~~ss~~a~  454 (577)
T KOG0642|consen  402 LALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK---------------------------EHGYPLSVDRTSSRPAH  454 (577)
T ss_pred             eeecccccceeeecCCceEEeeccCCcCccccCCcc---------------------------ccCCcceEeeccchhHh
Confidence            9995  678999999999999997765431100000                           00001111111111 00


Q ss_pred             HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc
Q psy18018        306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL  385 (635)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~  385 (635)
                      .......+...+...+.. -.....................+...|.+.+.+++..++.|+++|..++.++.....|...
T Consensus       455 ~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s  533 (577)
T KOG0642|consen  455 SLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS  533 (577)
T ss_pred             hhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccce
Confidence            000000000000000000 0000000001111111223334556778889999999999999999999999999999999


Q ss_pred             eeEEEEe--CCEEEEEeCCCcEEEEEccC
Q psy18018        386 TSGMELR--NNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       386 v~~l~~~--~~~l~s~~~dg~i~iwd~~~  412 (635)
                      ++++++.  +-+|++++.|+.+++|.+..
T Consensus       534 vtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  534 VTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ecceeecCCCceEEeecCCceeehhhccc
Confidence            9999987  44666666666666666543

>KOG1524|consensus

Probab=99.75  E-value=1.2e-14  Score=131.90  Aligned_cols=436  Identities=17%  Similarity=0.192  Sum_probs=251.9

Q ss_pred             ccCcceEEEEEEc-CCEEEEeeCCCcEEEE-ECCCCc----------------------------EEEEEeeCCCcEEEE
Q psy18018         78 GHDDHVITCLQFS-GSRIVSGSDDNTLKVW-SATTGK----------------------------CLLVSGSRDATLRVW  127 (635)
Q Consensus        78 ~h~~~vi~~~~~s-~~~l~s~~~d~~v~vW-d~~~~~----------------------------~ll~~~~~dg~i~vw  127 (635)
                      -|...+ +|+.|+ ..-+..+++|..+.+| |+.+..                            ..++..+.||.+.+-
T Consensus        12 r~~e~v-c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKV-CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeE-EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            455555 789998 4444555555555555 443211                            128899999999998


Q ss_pred             eCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcE
Q psy18018        128 HIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTL  205 (635)
Q Consensus       128 d~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  205 (635)
                      + +.++..+...+|.++|.|-.|  ||.-|+++++||.|++|.-. |............+.+..+.++..-+.-+..+.+
T Consensus        91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~  168 (737)
T KOG1524|consen   91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI  168 (737)
T ss_pred             c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence            7 457777888999999999999  99999999999999999854 3333344444455555555554433344455677


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccc
Q psy18018        206 KVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD  283 (635)
Q Consensus       206 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (635)
                      .+=.+.....+-..++|.+-|.++.|+  .+.+++|++|-..++||.....+                            
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L----------------------------  220 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL----------------------------  220 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc----------------------------
Confidence            777777777777889999999999996  78999999999999999655322                            


Q ss_pred             eeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC
Q psy18018        284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT  363 (635)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  363 (635)
                       ....+.+.++..++|.|+.. ++..+-.. .+                   ...+.......++||+||.++++|+..|
T Consensus       221 -f~S~~~ey~ITSva~npd~~-~~v~S~nt-~R-------------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  221 -FTSAAEEYAITSVAFNPEKD-YLLWSYNT-AR-------------------FSSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             -ccCChhccceeeeeeccccc-eeeeeeee-ee-------------------ecCCCccceEEEEEcCCCceeeccccCc
Confidence             33445666777788887733 22221100 00                   0122223344577999999999999999


Q ss_pred             eEEEEEccCCc-------e----EEeee------------CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        364 SIRVWEAESGN-------L----RHTLM------------GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       364 ~i~v~~~~~~~-------~----~~~~~------------~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      .+.+-..-..+       .    ...+.            .....+...+..-..|+++.. ..+.+|.-..-.....+.
T Consensus       279 ~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~sL~Y~hLvvaTs-~qvyiys~knwntpiiid  357 (737)
T KOG1524|consen  279 QLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFSLGYGHLVVATS-LQVYIYSEKNWNTPIIID  357 (737)
T ss_pred             eEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeeeeceeEEEEEec-cEEEEEecCCccCcEEEe
Confidence            87654322111       0    00110            122344444444334444332 235554433222211111


Q ss_pred             EE------eeCCcEEEEEeCCCcEEEEeCCCCceeee--eccCCc---cEEEEEecCCEEEEEe--CCCcEEEEEC-CCC
Q psy18018        421 IC------LFDGVHVVSGSLDTSIRVWEAESGNLRHT--LMGHQS---LTSGMELRNNILVSGN--ADSTVKVWDI-VSG  486 (635)
Q Consensus       421 ~~------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~---~v~~~~~~~~~l~s~~--~dg~i~iwd~-~~~  486 (635)
                      .-      -..++.........+|.+|..+. +....  +.+...   .-..++...+.|+.-.  +...+.+||. .++
T Consensus       358 gre~tr~lieq~ek~fli~dgsSi~lytyeg-R~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istg  436 (737)
T KOG1524|consen  358 GREDTRNLIEQGEKYFLILDGSSIWLYTYEG-RLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTG  436 (737)
T ss_pred             ccccchhHhhhhhhheEEecCcEEEEEEecC-ceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCC
Confidence            00      00111111122233344444331 11111  111100   0113444455555432  3345778888 666


Q ss_pred             ceeEEecCCCcccccEEEEEe------cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF------NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                      +....-.. -.|...|..++.      +++.++.-...+.+.|-.+++......+..           -...|..++|+.
T Consensus       437 k~qgDgk~-L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K-----------iGTmVhtLawnd  504 (737)
T KOG1524|consen  437 KRQGDGKS-LRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK-----------IGTMVHTLAWND  504 (737)
T ss_pred             cccCCccc-cchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhh-----------hhhhhhhhhhcc
Confidence            65432211 125555655655      367777777788888877665432222211           244677888985


Q ss_pred             CCeEEEEecCCCeEEEEeCCC
Q psy18018        561 NSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       561 ~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      .-+. ++|-.|+.+.||-.+.
T Consensus       505 ttNi-LcglqDt~fsVWy~pn  524 (737)
T KOG1524|consen  505 TTNI-LCGLQDTCFSVWYYPN  524 (737)
T ss_pred             ccce-eeeeccceEEEEEcCC
Confidence            5554 5688899999997654

>KOG1912|consensus

Probab=99.74  E-value=1.8e-14  Score=136.68  Aligned_cols=425  Identities=15%  Similarity=0.132  Sum_probs=245.2

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--------C------CEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--------G------SRIV   95 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--------~------~~l~   95 (635)
                      .++.++    | +-++|.|+         +..+.+-|..+.+.++.++-|...| +.+.|.        +      -+||
T Consensus        19 ~A~Dw~----~-~GLiAygs---------hslV~VVDs~s~q~iqsie~h~s~V-~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   19 NAADWS----P-SGLIAYGS---------HSLVSVVDSRSLQLIQSIELHQSAV-TSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccccC----c-cceEEEec---------CceEEEEehhhhhhhhccccCccce-eEEEeccCCCchhccCccccceeEE
Confidence            567788    4 34666665         5667778999999999999999887 899997        1      2567


Q ss_pred             EeeCCCcEEEEECCCCcEE-------------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         96 SGSDDNTLKVWSATTGKCL-------------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~l-------------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      ++...|.|.+||...+..+                         |++-....++.+|+..+|+.......-.....|+.+
T Consensus        84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~  163 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV  163 (1062)
T ss_pred             eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence            7777888888887654332                         666666778888888888887776665666666776


Q ss_pred             ---cCCEEEEEeCCCeEEEEeCCCc-------cceeeccccce-----------e-----EEe----------eeccCCC
Q psy18018        151 ---DGKLVVSGAYDYMVKIWNPDTE-------ECLHAELQETE-----------V-----ELS----------HGYALRS  194 (635)
Q Consensus       151 ---~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~-----------~-----~~~----------~~~~~~~  194 (635)
                         |.+.+..-+..|.+.+-+.-..       +..+....+..           .     ...          .+.+.-.
T Consensus       164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r  243 (1062)
T KOG1912|consen  164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR  243 (1062)
T ss_pred             CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence               5666666666666665543221       11110000000           0     000          0011122


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe----eCCEEEEeeCceeEEEecccceeeeccccccccCcccee
Q psy18018        195 RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM----AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR  270 (635)
Q Consensus       195 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~----~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  270 (635)
                      .++.......+.++|++-..++....-..+.+.-+.+    ..+.|+..-.||.+.+|--+...................
T Consensus       244 n~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~  323 (1062)
T KOG1912|consen  244 NILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE  323 (1062)
T ss_pred             ceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence            3444445667889998888888777655555544444    366899999999999996544211111000000000000


Q ss_pred             eeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE
Q psy18018        271 HMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ  350 (635)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  350 (635)
                      +.                                                             ...+......+.+....
T Consensus       324 Q~-------------------------------------------------------------~~vr~m~~~rp~~~~~c  342 (1062)
T KOG1912|consen  324 QV-------------------------------------------------------------HVVRPMEEFRPVIGASC  342 (1062)
T ss_pred             ce-------------------------------------------------------------EEEeechhcccceeecC
Confidence            00                                                             00000011111112222


Q ss_pred             ec-CcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEe-------CCEEEEEeCCCcE----EEEEccCCccee
Q psy18018        351 FD-GVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR-------NNILVSGNADSTV----KVWDIVSGTKKL  417 (635)
Q Consensus       351 ~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~-------~~~l~s~~~dg~i----~iwd~~~~~~~~  417 (635)
                      |. ...++.--.+|.+.+|.+.+++.-..... -...+..+.|+       ...|..-+.||..    .+-... .....
T Consensus       343 Ps~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~-p~p~~  421 (1062)
T KOG1912|consen  343 PSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMR-PMPEL  421 (1062)
T ss_pred             CCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecc-cCccc
Confidence            32 33344444566777777776543222211 11122222222       2234444444410    000000 00111


Q ss_pred             EEEEEeeCC-------cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEe----------CCCcEE
Q psy18018        418 MFRICLFDG-------VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGN----------ADSTVK  479 (635)
Q Consensus       418 ~~~~~~~~~-------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~----------~dg~i~  479 (635)
                      ......|.+       ..++.|+..|+|.++|+.++.....+..|.+.|.++.|-|+ .+++.+          --+.+.
T Consensus       422 t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~  501 (1062)
T KOG1912|consen  422 TKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLV  501 (1062)
T ss_pred             ceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEE
Confidence            111122222       25888999999999999999999999999999999999765 444433          234577


Q ss_pred             EEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce
Q psy18018        480 VWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEF  531 (635)
Q Consensus       480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~  531 (635)
                      +-|+++|....--........+|..+..  .++||+....|.-+.+||+++...
T Consensus       502 vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~  555 (1062)
T KOG1912|consen  502 VTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM  555 (1062)
T ss_pred             EEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence            8899988654433223345677877777  599999999999999999976443

>KOG1009|consensus

Probab=99.74  E-value=1.3e-15  Score=133.16  Aligned_cols=170  Identities=19%  Similarity=0.278  Sum_probs=122.5

Q ss_pred             ccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeecCCCCC---------CceeeccCcceEEEEEEc--CC
Q psy18018         25 DDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRTRPIKD---------PKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        25 ~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~~~~~~---------~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      ..+| ..+.|.    ++.. .+|+|+.++-        +++|-+...+.         +..|..|+..| +++.|+  |.
T Consensus        13 ~~pv-~s~dfq----~n~~~~laT~G~D~~--------iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV-N~vRf~p~ge   78 (434)
T KOG1009|consen   13 HEPV-YSVDFQ----KNSLNKLATAGGDKD--------IRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV-NVVRFSPDGE   78 (434)
T ss_pred             CCce-EEEEec----cCcccceecccCccc--------eeeeeeeecCCCCCceeEEEeecccCCccee-EEEEEcCCcC
Confidence            3455 899999    5555 9999986544        44697664433         34577898887 999999  89


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD  170 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~  170 (635)
                      +||||+++|.|.+|....-...    ..|.... -+-+.......+.+|...|..++|  |+.++++++.|.++++||+.
T Consensus        79 lLASg~D~g~v~lWk~~~~~~~----~~d~e~~-~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   79 LLASGGDGGEVFLWKQGDVRIF----DADTEAD-LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             eeeecCCCceEEEEEecCcCCc----cccchhh-hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            9999999999999987631100    1111000 011123455678899999999999  99999999999999999999


Q ss_pred             CccceeeccccceeEEeeeccC-CCEEEEEeCCCcEEEEECCCC
Q psy18018        171 TEECLHAELQETEVELSHGYAL-RSRIVSGSDDNTLKVWSATTG  213 (635)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~  213 (635)
                      .|.....+..+........+.+ +.++++-+.|...+.+.+...
T Consensus       154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence            9999888877766655555544 567777777776666665443

>KOG0642|consensus

Probab=99.74  E-value=2.3e-17  Score=150.28  Aligned_cols=252  Identities=18%  Similarity=0.250  Sum_probs=179.4

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccC--------CceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEcc
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAES--------GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~--------~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~  411 (635)
                      ...+..+|.|....|++++.+|.+.+|+++.        -+++.++++|.++|.|++..  +..+++|+.||+|+.|++.
T Consensus       295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence            3445566788888899999999999999932        24678999999999999986  6788888888888888775


Q ss_pred             CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCcee
Q psy18018        412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                      ....        |++             .+|  ...+...+.||...+..+.++  .+.|++++.||++++|+.....+ 
T Consensus       375 ~n~d--------p~d-------------s~d--p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  375 PNQD--------PDD-------------SYD--PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             CCCC--------ccc-------------ccC--cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-
Confidence            2111        110             011  123456788999999888885  55899999999999999887665 


Q ss_pred             EEecCCCcccccEEEEEecCC---EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEE
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSR---FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI  566 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  566 (635)
                      ..+.....+. .-+++.+-..   ..++...-+.--+++.+.......+.......+    .....+..+...|.+.+.+
T Consensus       431 ~~f~~~~e~g-~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~----~~~~~in~vVs~~~~~~~~  505 (577)
T KOG0642|consen  431 CTFGEPKEHG-YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP----RRYPQINKVVSHPTADITF  505 (577)
T ss_pred             cccCCccccC-CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc----cccCccceEEecCCCCeeE
Confidence            4444433333 3345666322   223332333333444444443333332211111    1234567778889999999


Q ss_pred             EecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        567 TSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       567 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ++..|+.|+++|..+++.+...     ..|...++++++.|+|.+|++++.|+.  +++|.+|
T Consensus       506 ~~hed~~Ir~~dn~~~~~l~s~-----~a~~~svtslai~~ng~~l~s~s~d~s--v~l~kld  561 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKILHSM-----VAHKDSVTSLAIDPNGPYLMSGSHDGS--VRLWKLD  561 (577)
T ss_pred             ecccCCceecccccccccchhe-----eeccceecceeecCCCceEEeecCCce--eehhhcc
Confidence            9999999999999999999988     578999999999999999999999998  6777665

>KOG0644|consensus

Probab=99.74  E-value=2.8e-18  Score=163.09  Aligned_cols=274  Identities=23%  Similarity=0.324  Sum_probs=193.9

Q ss_pred             CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018         16 KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        16 ~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      +..+.|.||...| .|++|-    ..|+|+.+++++..+-        ||...++.++..++||.+.+ +.++.+  ..+
T Consensus       181 k~ikrLlgH~naV-yca~fD----rtg~~Iitgsdd~lvK--------iwS~et~~~lAs~rGhs~di-tdlavs~~n~~  246 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAV-YCAIFD----RTGRYIITGSDDRLVK--------IWSMETARCLASCRGHSGDI-TDLAVSSNNTM  246 (1113)
T ss_pred             HHHHHHHhhhhhe-eeeeec----cccceEeecCccceee--------eeeccchhhhccCCCCcccc-chhccchhhhh
Confidence            3357899999999 899999    8999999999866554        69999999999999999998 899998  556


Q ss_pred             EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCcc
Q psy18018         94 IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEE  173 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~  173 (635)
                      +|+++.|..|++|-+.                     .+.++..+.+|++.|++|+|....  +.+.||++++||.+-.-
T Consensus       247 iaaaS~D~vIrvWrl~---------------------~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~  303 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLP---------------------DGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEP  303 (1113)
T ss_pred             hhhcccCceEEEEecC---------------------CCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccc
Confidence            6777777777777655                     567788999999999999995543  88899999999987111


Q ss_pred             ceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEeccc
Q psy18018        174 CLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNA  251 (635)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~  251 (635)
                      .... ..+             .-             ..++          ..+-++.+  .+..++|++.|+.-..|.+.
T Consensus       304 ~~y~-prp-------------~~-------------~~~~----------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~  346 (1113)
T KOG0644|consen  304 RIYV-PRP-------------LK-------------FTEK----------DLVDSILFENNGDRFLTGSRDGEARNHEFE  346 (1113)
T ss_pred             cccC-CCC-------------CC-------------cccc----------cceeeeeccccccccccccCCcccccchhh
Confidence            1110 000             00             0000          11112222  24556666666666666543


Q ss_pred             ceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhh
Q psy18018        252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE  331 (635)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (635)
                      .......                                  .+..                                   
T Consensus       347 ~l~~~~~----------------------------------~lif-----------------------------------  357 (1113)
T KOG0644|consen  347 QLAWRSN----------------------------------LLIF-----------------------------------  357 (1113)
T ss_pred             Hhhhhcc----------------------------------ceEE-----------------------------------
Confidence            2100000                                  0000                                   


Q ss_pred             hhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEE
Q psy18018        332 AATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKV  407 (635)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~i  407 (635)
                                     ...+. -..+.+++-.+-.+.+|++.+|...+.+.+|...+..+.++   +....+++.||...+
T Consensus       358 ---------------~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~i  422 (1113)
T KOG0644|consen  358 ---------------VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTII  422 (1113)
T ss_pred             ---------------EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEe
Confidence                           00000 11345566667789999999999999999999999999886   567889999999999


Q ss_pred             EEccCCcceeEEE---------EEeeCCcEEEEEeCCCcEEEEeCCCCc
Q psy18018        408 WDIVSGTKKLMFR---------ICLFDGVHVVSGSLDTSIRVWEAESGN  447 (635)
Q Consensus       408 wd~~~~~~~~~~~---------~~~~~~~~l~~~~~d~~i~~~d~~~~~  447 (635)
                      ||+-.+.++....         .|++||..++....-|.+++...-.++
T Consensus       423 wdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  423 WDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             eecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            9998876655443         388899999999888999998765543

>KOG0307|consensus

Probab=99.74  E-value=3.7e-17  Score=161.69  Aligned_cols=228  Identities=18%  Similarity=0.297  Sum_probs=172.8

Q ss_pred             CEEEEEeCCCcEEEEECCC---C---eEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeecccccccc
Q psy18018        194 SRIVSGSDDNTLKVWSATT---G---KCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSC  264 (635)
Q Consensus       194 ~~l~~~~~dg~i~vwd~~~---~---~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~  264 (635)
                      +.++.|.+||.|.+||...   +   ..+.+...|.+.|..+.|+   ++.|++|+.||.|.+||+..-......     
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~-----  155 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP-----  155 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC-----
Confidence            5688999999999999765   2   3446678899999999995   779999999999999998763211000     


Q ss_pred             CccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCC
Q psy18018        265 EPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP  344 (635)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (635)
                                                                                             ........+
T Consensus       156 -----------------------------------------------------------------------~~~~~~~eI  164 (1049)
T KOG0307|consen  156 -----------------------------------------------------------------------GSQAPPSEI  164 (1049)
T ss_pred             -----------------------------------------------------------------------CCCCCcccc
Confidence                                                                                   001112233


Q ss_pred             ceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCc--ceeEEEEeCC---EEEEEeCCCcEEEEEccCCcceeE
Q psy18018        345 DLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNN---ILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       345 ~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      .+++|.. ....|++++.+|.+.+||++..+.+-.+..+..  .+..++|+++   .+++++.|.               
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd---------------  229 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD---------------  229 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC---------------
Confidence            3444444 345688999999999999998877766665544  4667788732   444444442               


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCC-CceeeeeccCCccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                                     ..-.|.+||++. ...++++.+|+..|.+++|   +++++++++.|+.|.+|+..+++.+.++..
T Consensus       230 ---------------~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  230 ---------------SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             ---------------CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence                           123577888765 4567788999999999999   457999999999999999999999999986


Q ss_pred             CCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        495 RNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       495 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                         ....+..+.|   +...++.++-||.|.|+.+....
T Consensus       295 ---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 ---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence               6677888888   56789999999999999998765

>KOG2111|consensus

Probab=99.74  E-value=2.5e-15  Score=127.30  Aligned_cols=242  Identities=17%  Similarity=0.223  Sum_probs=171.8

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC--cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ--SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF  424 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  424 (635)
                      ++|..|...+++|..+| .++|+.+.-+.....+.+.  -.+..+-+..++++..+..+.=        +          
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~p--------k----------   71 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRP--------K----------   71 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCC--------C----------
Confidence            67888999999999887 8999987533322222222  2333444445555544422210        0          


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECC-CCceeEEecCCCcccccEE
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~  503 (635)
                              .....+.+||-...+++.++. ..++|.++.+..+.+++.-. +.|++|... +.+.+..+.... ......
T Consensus        72 --------y~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~-NPkGlC  140 (346)
T KOG2111|consen   72 --------YPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRS-NPKGLC  140 (346)
T ss_pred             --------CCCceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeeccc-CCCceE
Confidence                    023467888866666666665 57789999999998888754 579999988 556666665422 223355


Q ss_pred             EEEe--cCCEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe-EEEEeC
Q psy18018        504 CLQF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT-VKLWDV  579 (635)
Q Consensus       504 ~~~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-v~iwd~  579 (635)
                      +++.  +..+||.- -.-|.|+|-|+...+.-         .|....+|...|.|++++-+|.++||++..|+ |||||.
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~---------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN---------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT  211 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCcC---------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence            6666  34455543 35689999998866532         34556679999999999999999999999997 799999


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      .+|+.+.+++.   +.....|.+|+||||+.+||++++-|+  +++|.+.-..
T Consensus       212 ~~g~~l~E~RR---G~d~A~iy~iaFSp~~s~LavsSdKgT--lHiF~l~~~~  259 (346)
T KOG2111|consen  212 EDGTLLQELRR---GVDRADIYCIAFSPNSSWLAVSSDKGT--LHIFSLRDTE  259 (346)
T ss_pred             CCCcEeeeeec---CCchheEEEEEeCCCccEEEEEcCCCe--EEEEEeecCC
Confidence            99999999975   455678999999999999999999999  6677665433

>KOG1240|consensus

Probab=99.74  E-value=9.3e-16  Score=152.54  Aligned_cols=378  Identities=16%  Similarity=0.171  Sum_probs=201.8

Q ss_pred             eecCCCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCC
Q psy18018         65 WRTRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH  141 (635)
Q Consensus        65 wd~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h  141 (635)
                      |++ .|..+..|..|...+ ..++.+   +.+++|||.||+||+||...-..              +..+.+...++..-
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v-~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~--------------~~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAV-IKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG--------------EGGSARSELTYSPE 1097 (1431)
T ss_pred             CCc-cceEeehhhhccccc-cceeecCCCCceEEEecCCceEEEeeehhhhc--------------CcceeeeeEEEecc
Confidence            553 457788899999998 577777   68999999999999999874221              00112333334334


Q ss_pred             CcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        142 LAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       142 ~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      ..++.++..  .++.+|.++.||.|++.+++.......                  .+.     .+++-|....-.+-.+
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~------------------~~~-----~~ri~n~~~~g~vv~m 1154 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKR------------------VAT-----QVRIPNLKKDGVVVSM 1154 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccc------------------eee-----eeecccccCCCceEEe
Confidence            567777776  899999999999999999876311100                  000     0111111111111111


Q ss_pred             eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      .+......     ...++.+...+.|..||......                                            
T Consensus      1155 ~a~~~~~~-----S~~lvy~T~~~~iv~~D~r~~~~-------------------------------------------- 1185 (1431)
T KOG1240|consen 1155 HAFTAIVQ-----SHVLVYATDLSRIVSWDTRMRHD-------------------------------------------- 1185 (1431)
T ss_pred             eccccccc-----ceeEEEEEeccceEEecchhhhh--------------------------------------------
Confidence            11111110     02344455555666666543211                                            


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                      .............+.++.+|.+.++++|+..|.+.+||++-+.++..+
T Consensus      1186 --------------------------------~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1186 --------------------------------AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred             --------------------------------HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence                                            111112223344556678888899999999999999999988877665


Q ss_pred             e-CCCcceeEEEEe---C--CEEEEEe--CCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee
Q psy18018        380 M-GHQSLTSGMELR---N--NILVSGN--ADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT  451 (635)
Q Consensus       380 ~-~~~~~v~~l~~~---~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  451 (635)
                      . ++..++.-+..+   +  ...++++  ..+.+.+|++.++.....+..           +.+-...-|-+...  ...
T Consensus      1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~-----------s~~~p~ls~~~Ps~--~~~ 1300 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA-----------SDGAPILSYALPSN--DAR 1300 (1431)
T ss_pred             cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc-----------CCCCcchhhhcccc--cCC
Confidence            4 344566666654   3  4444444  467899999988754433221           11111111111111  000


Q ss_pred             eccCC-ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeE-EecCCCcccccEEEEEe-cCCEEEEEeCCCcEEE-EECC
Q psy18018        452 LMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ-TLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKL-WDVK  527 (635)
Q Consensus       452 ~~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~v-wd~~  527 (635)
                      -.+.. +...++.-.+..+.+|+.|..|+.||....+... ...+   .......... .+..++.++.--.-.+ ....
T Consensus      1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~---~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~t 1377 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPG---PSTSYSTNSESYDLSTIPGSQFIDEFIIYQQT 1377 (1431)
T ss_pred             CCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccC---ccccccccchhccccccCCCccchhhhhhhhh
Confidence            01111 1222333345689999999999999988765442 2222   1111111111 1223333322111100 0001


Q ss_pred             CC--ceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecCCCeEEEEe
Q psy18018        528 TG--EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDDGTVKLWD  578 (635)
Q Consensus       528 ~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~v~iwd  578 (635)
                      .+  +...+..............|..+|+.+++... ..+|++++.||.|+||.
T Consensus      1378 v~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1378 VGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            00  00001111111122233458889999998764 46899999999999994

>KOG1334|consensus

Probab=99.72  E-value=7.9e-17  Score=144.03  Aligned_cols=306  Identities=17%  Similarity=0.230  Sum_probs=207.6

Q ss_pred             CCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcce
Q psy18018         68 RPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAV  145 (635)
Q Consensus        68 ~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v  145 (635)
                      +...+...|..|.+.| ..|.|+  |..|+|||+|..|.+||+..++..                    +.-..||...|
T Consensus       130 qr~~l~~kL~~H~GcV-ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------l~f~SGH~~Nv  188 (559)
T KOG1334|consen  130 QRLRLQKKLNKHKGCV-NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------LSFESGHCNNV  188 (559)
T ss_pred             HHhhhhhcccCCCCcc-ceeeecccCceeeccCccceEEeehhhccCcc--------------------cccccccccch
Confidence            3345567789999999 999999  999999999999999998865432                    22234888888


Q ss_pred             EEEEe----cCCEEEEEeCCCeEEEEeCCCcccee---eccccc-eeEEeeecc-CCCEEEEEeCCCcEEEEECCCCeEE
Q psy18018        146 RCVQY----DGKLVVSGAYDYMVKIWNPDTEECLH---AELQET-EVELSHGYA-LRSRIVSGSDDNTLKVWSATTGKCL  216 (635)
Q Consensus       146 ~~l~~----~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~-~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~  216 (635)
                      ..-.|    +...+++++.||.|++=.+.......   .+..+. .+...+.-+ ....+.+++.|+.+.-+|++.+.+.
T Consensus       189 fQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa  268 (559)
T KOG1334|consen  189 FQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA  268 (559)
T ss_pred             hhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc
Confidence            88778    77899999999999988765433222   222222 222222222 2357889999999999999886554


Q ss_pred             EEE---eCCCC---CeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        217 RTL---IGHTG---GVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       217 ~~~---~~h~~---~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      ..+   ..+..   ...+++.+   .+.+++++.|..+++||.+.-......     .         .            
T Consensus       269 ~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n-----~---------~------------  322 (559)
T KOG1334|consen  269 EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN-----G---------V------------  322 (559)
T ss_pred             ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc-----c---------h------------
Confidence            433   23333   34566664   568999999999999996542110000     0         0            


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                              .-.|.|                               ..+ .......+++++++.++.-+++...|-.|++
T Consensus       323 --------~~~f~p-------------------------------~hl-~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  323 --------LDKFCP-------------------------------HHL-VEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             --------hhhcCC-------------------------------ccc-cccCcccceeEEecCCccceeeeecccceEE
Confidence                    000000                               000 0122344567788888888888888889999


Q ss_pred             EEccCCc------------eEE-eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeC
Q psy18018        368 WEAESGN------------LRH-TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSL  434 (635)
Q Consensus       368 ~~~~~~~------------~~~-~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~  434 (635)
                      |.-.-+.            .+. .+++|...                            +.+.-..++-|...++++|+.
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~----------------------------~TVKgVNFfGPrsEyVvSGSD  414 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNS----------------------------RTVKGVNFFGPRSEYVVSGSD  414 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccc----------------------------cccceeeeccCccceEEecCc
Confidence            9543221            111 24555431                            112222334577888999999


Q ss_pred             CCcEEEEeCCCCceeeeeccCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCce
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQC  488 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~  488 (635)
                      -|.|.+|+-.+++.++-+.+....|+|+.+++.  .||+.+-|..|+||...+.+.
T Consensus       415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence            999999999999999999987779999999876  899999999999999855443

>KOG0974|consensus

Probab=99.71  E-value=2.5e-14  Score=140.59  Aligned_cols=162  Identities=25%  Similarity=0.419  Sum_probs=135.6

Q ss_pred             CCEEEEeeCCCcEEEEECCCCcEE-------------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcce
Q psy18018         91 GSRIVSGSDDNTLKVWSATTGKCL-------------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAV  145 (635)
Q Consensus        91 ~~~l~s~~~d~~v~vWd~~~~~~l-------------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v  145 (635)
                      .+.++.+..++.+-+||...+..+                         +++|+.-+.|.+|++...+....+.||.+.|
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            567888889999999998765543                         8999999999999988555445788999999


Q ss_pred             EEEEe--cCCEEEEEeCCCeEEEEeCCCcccee-eccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy18018        146 RCVQY--DGKLVVSGAYDYMVKIWNPDTEECLH-AELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGH  222 (635)
Q Consensus       146 ~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  222 (635)
                      .++.+  ||+++++.|+|+++|+|++++.+... ...++...+....+.+. ++++++.|-+.++|+.+ +..+..+.+|
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h  256 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEH  256 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhh
Confidence            99999  99999999999999999999998877 56666666666666666 99999999999999754 5555688888


Q ss_pred             CC-CeEEEEee--CCEEEEeeCceeEEEeccccee
Q psy18018        223 TG-GVWSSQMA--GNIIISGSTDRTLKGWSNAERI  254 (635)
Q Consensus       223 ~~-~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~  254 (635)
                      .+ .++.+...  ....+|++.|+.+++|++....
T Consensus       257 ~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  257 SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             hhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            65 68888884  5689999999999999987653

>KOG0644|consensus

Probab=99.71  E-value=6.5e-17  Score=153.99  Aligned_cols=282  Identities=25%  Similarity=0.399  Sum_probs=201.7

Q ss_pred             eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee-ccCCCEEEEEeCCCcEEEEE
Q psy18018        133 ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG-YALRSRIVSGSDDNTLKVWS  209 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd  209 (635)
                      +.+..|.+|..+|.|..|  .|.++++|+.|..++||..+++.++....++..-..... ...+-++++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            344566799999999999  799999999999999999999999998888866554444 44456788899999999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccc
Q psy18018        210 ATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP  289 (635)
Q Consensus       210 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (635)
                      +.++.++..+.+|++.|++++|++..  +.+.||++++||.+-......     ..+                       
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~-----prp-----------------------  310 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYV-----PRP-----------------------  310 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccC-----CCC-----------------------
Confidence            99999999999999999999998655  888999999999762110000     000                       


Q ss_pred             cceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEE
Q psy18018        290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWE  369 (635)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~  369 (635)
                                                                    ...........+-+...+..+++|+.++.-..|.
T Consensus       311 ----------------------------------------------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e  344 (1113)
T KOG0644|consen  311 ----------------------------------------------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE  344 (1113)
T ss_pred             ----------------------------------------------CCcccccceeeeeccccccccccccCCcccccch
Confidence                                                          0000001111222444566677777777665554


Q ss_pred             ccCCceEEeeeCCCcceeEEEEeCC--EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc
Q psy18018        370 AESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN  447 (635)
Q Consensus       370 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  447 (635)
                      ...                +++...  .+++...|-                      ..+.+++-.+-.+.+|++.+|.
T Consensus       345 ~~~----------------l~~~~~~lif~t~ssd~----------------------~~~~~~ar~~~~~~vwnl~~g~  386 (1113)
T KOG0644|consen  345 FEQ----------------LAWRSNLLIFVTRSSDL----------------------SSIVVTARNDHRLCVWNLYTGQ  386 (1113)
T ss_pred             hhH----------------hhhhccceEEEeccccc----------------------cccceeeeeeeEeeeeecccch
Confidence            331                122211  111111111                      1345566677789999999999


Q ss_pred             eeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEE
Q psy18018        448 LRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVK  522 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~  522 (635)
                      +.+.+.+|...+..+.++   +....+++.||...|||+..+.+++....   ....+..-+|  +|..++....-|.++
T Consensus       387 l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl~d~kFSqdgts~~lsd~hgql~  463 (1113)
T KOG0644|consen  387 LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKLVDGKFSQDGTSIALSDDHGQLY  463 (1113)
T ss_pred             hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---ccceeeccccCCCCceEecCCCCCceE
Confidence            999999999988888874   56888999999999999999988887663   2334444556  678888888888888


Q ss_pred             EEECCCCce
Q psy18018        523 LWDVKTGEF  531 (635)
Q Consensus       523 vwd~~~~~~  531 (635)
                      |.....++.
T Consensus       464 i~g~gqs~s  472 (1113)
T KOG0644|consen  464 ILGTGQSKS  472 (1113)
T ss_pred             EeccCCCcc
Confidence            887665543

>KOG0303|consensus

Probab=99.70  E-value=3.3e-15  Score=130.14  Aligned_cols=163  Identities=23%  Similarity=0.327  Sum_probs=132.8

Q ss_pred             ceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         74 KVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        74 ~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      ..+.||+++| ..++|+   .+.+||||+|.+|.||++..+...              ..-.+++..|.||+..|--++|
T Consensus        75 P~v~GHt~~v-LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------~~ltepvv~L~gH~rrVg~V~w  139 (472)
T KOG0303|consen   75 PLVCGHTAPV-LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------RDLTEPVVELYGHQRRVGLVQW  139 (472)
T ss_pred             CCccCccccc-cccccCccCCceeecCCCCceEEEEECCCcccc--------------cCcccceEEEeecceeEEEEee
Confidence            3467999999 899999   889999999999999999754321              1123778899999999999999


Q ss_pred             ---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC--
Q psy18018        151 ---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG--  225 (635)
Q Consensus       151 ---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--  225 (635)
                         ..+.|++++.|.+|.+||+.+++.+..+.+...+....+..+++++++++.|..|+|||.++++.+..-.+|.+.  
T Consensus       140 HPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~  219 (472)
T KOG0303|consen  140 HPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP  219 (472)
T ss_pred             cccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc
Confidence               678999999999999999999999888886666666666678899999999999999999999999988888874  


Q ss_pred             eEEEEe-eCCEEEEee----CceeEEEecccc
Q psy18018        226 VWSSQM-AGNIIISGS----TDRTLKGWSNAE  252 (635)
Q Consensus       226 v~~~~~-~~~~l~s~~----~dg~i~~w~~~~  252 (635)
                      ...+-. ++. ++|.+    .+..+-+||...
T Consensus       220 ~Raifl~~g~-i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  220 ARAIFLASGK-IFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             ceeEEeccCc-eeeeccccccccceeccCccc
Confidence            333333 455 55444    478889998654

>KOG1310|consensus

Probab=99.69  E-value=1.8e-15  Score=137.54  Aligned_cols=119  Identities=26%  Similarity=0.389  Sum_probs=96.9

Q ss_pred             EEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc-cceeEEeeecc---CCCEEEEEeCCCcEEE
Q psy18018        134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ-ETEVELSHGYA---LRSRIVSGSDDNTLKV  207 (635)
Q Consensus       134 ~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~~~~~dg~i~v  207 (635)
                      ..+.|.||++.|+|+.|  +|.+|++|+.|-.+.|||.-..+.++.+.. +...+++..|-   .+..+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34578899999999999  999999999999999999998888776644 34445554443   3568889999999999


Q ss_pred             EECCC----------CeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccc
Q psy18018        208 WSATT----------GKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       208 wd~~~----------~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~  252 (635)
                      +|+..          .+....+..|...|..++..   ++.+.++++||+|+-+|+++
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            99974          23345567899999888873   57999999999999999876

>KOG0771|consensus

Probab=99.68  E-value=9.2e-16  Score=135.17  Aligned_cols=190  Identities=19%  Similarity=0.250  Sum_probs=143.6

Q ss_pred             EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        421 ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                      .+..+|..+++++.||++|+|+.++...+.....|...|.++.|  +++.|++.+.| ..+||+..++..++.... ...
T Consensus       151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-~~k  228 (398)
T KOG0771|consen  151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-FSK  228 (398)
T ss_pred             EEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-ccc
Confidence            45678889999999999999998888888888889999999888  56799999999 899999999977776653 223


Q ss_pred             cccEEEEEe--cC-----CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        499 QSAVTCLQF--NS-----RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       499 ~~~v~~~~~--~~-----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      ......+.|  |+     ..++....-+.|+.||+.....-..++..      ....-...|++++.|+||+++|.|+.|
T Consensus       229 ~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~------~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  229 DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR------KKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh------hhhhccCcceeEEEcCCCcEEEEeccC
Confidence            444555666  33     22233334466777776543321111110      001123479999999999999999999


Q ss_pred             CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeE
Q psy18018        572 GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEE  622 (635)
Q Consensus       572 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~  622 (635)
                      |.|-|++..+.+.+.-.+    ..|...|+.+.|+||.++++..+.+....
T Consensus       303 GsVai~~~~~lq~~~~vk----~aH~~~VT~ltF~Pdsr~~~svSs~~~~~  349 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVK----EAHLGFVTGLTFSPDSRYLASVSSDNEAA  349 (398)
T ss_pred             CcEEEEEeceeeeeEeeh----hhheeeeeeEEEcCCcCcccccccCCcee
Confidence            999999999888777665    68999999999999999999988888733

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.67  E-value=5.4e-13  Score=128.97  Aligned_cols=291  Identities=17%  Similarity=0.145  Sum_probs=183.5

Q ss_pred             EcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEe
Q psy18018         89 FSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWN  168 (635)
Q Consensus        89 ~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd  168 (635)
                      ..+.+++.++.++.|..+|..+|+.            +|..+.+.         ........++..++.++.+|.+..+|
T Consensus        63 v~~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~---------~~~~~p~v~~~~v~v~~~~g~l~ald  121 (377)
T TIGR03300        63 VAGGKVYAADADGTVVALDAETGKR------------LWRVDLDE---------RLSGGVGADGGLVFVGTEKGEVIALD  121 (377)
T ss_pred             EECCEEEEECCCCeEEEEEccCCcE------------eeeecCCC---------CcccceEEcCCEEEEEcCCCEEEEEE
Confidence            3367777777777777777776653            34433222         11123344788888999999999999


Q ss_pred             CCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeE-----EEEeeCCEEEEeeCce
Q psy18018        169 PDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW-----SSQMAGNIIISGSTDR  243 (635)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~l~s~~~dg  243 (635)
                      ..+|+.+.+............ ..++.++.++.++.+..||..+|+.+..+........     +....+          
T Consensus       122 ~~tG~~~W~~~~~~~~~~~p~-v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~----------  190 (377)
T TIGR03300       122 AEDGKELWRAKLSSEVLSPPL-VANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD----------  190 (377)
T ss_pred             CCCCcEeeeeccCceeecCCE-EECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC----------
Confidence            999998876655443322222 2356778888888899999888887766543221110     000111          


Q ss_pred             eEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCc
Q psy18018        244 TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL  323 (635)
Q Consensus       244 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (635)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (377)
T TIGR03300       191 --------------------------------------------------------------------------------  190 (377)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc-----------ceeEEEEe
Q psy18018        324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-----------LTSGMELR  392 (635)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-----------~v~~l~~~  392 (635)
                                                    ..++.+..+|.+..+|..+|+.+........           ........
T Consensus       191 ------------------------------~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~  240 (377)
T TIGR03300       191 ------------------------------GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD  240 (377)
T ss_pred             ------------------------------CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence                                          2344445555555566555554433221000           00112234


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEEEE-----EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-CccEEEEEecC
Q psy18018        393 NNILVSGNADSTVKVWDIVSGTKKLMFRI-----CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-QSLTSGMELRN  466 (635)
Q Consensus       393 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~  466 (635)
                      ++.++.++.+|.+..+|..+++.......     ....+..++.++.+|.+..+|..+++.+...... ..........+
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g  320 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVG  320 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEEC
Confidence            66777777888888888877765443331     2235677888889999999999999887665322 22233334467


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEecCCCccccc-EEEEEecCCEEEEEeCCCcEEEE
Q psy18018        467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA-VTCLQFNSRFVITSSDDGTVKLW  524 (635)
Q Consensus       467 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~d~~i~vw  524 (635)
                      +.+++++.+|.++++|..+++.+..++.   +... .....+.++.|+.++.||.|+.|
T Consensus       321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~~---~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       321 GYLVVGDFEGYLHWLSREDGSFVARLKT---DGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCccccCCEEECCEEEEEeCCceEEEe
Confidence            8999999999999999999999988875   3322 22333445668899999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1007|consensus

Probab=99.67  E-value=7.3e-15  Score=122.60  Aligned_cols=227  Identities=18%  Similarity=0.213  Sum_probs=172.4

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCC---------CCCCceee-ccCcceEEEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP---------IKDPKVLK-GHDDHVITCL   87 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~---------~~~~~~l~-~h~~~vi~~~   87 (635)
                      .++|..|.+.| -.++-+|   .|.+.||+...+..-. +.-...-||..+.         .+++..|. .|.+.+ .|+
T Consensus        56 skvf~h~agEv-w~las~P---~d~~ilaT~yn~~s~s-~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i-~cv  129 (370)
T KOG1007|consen   56 SKVFFHHAGEV-WDLASSP---FDQRILATVYNDTSDS-GVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKI-NCV  129 (370)
T ss_pred             hhhhhcCCcce-ehhhcCC---CCCceEEEEEeccCCC-cceeeEEEEecccccCccccchhhHhhcCCHHHhCce-eeE
Confidence            37888999998 7999997   5778888865532111 1123455687643         34556666 666777 999


Q ss_pred             EEc--CCEEEEeeCCCcEEEEECCCCcEE----------------------------EEEeeCCCcEEEEeCCCCeEEEE
Q psy18018         88 QFS--GSRIVSGSDDNTLKVWSATTGKCL----------------------------LVSGSRDATLRVWHIESGECLHV  137 (635)
Q Consensus        88 ~~s--~~~l~s~~~d~~v~vWd~~~~~~l----------------------------l~~~~~dg~i~vwd~~~~~~~~~  137 (635)
                      .|.  +..||+.. |+.|.+|+.+.+..+                            .+....|+++..||+++.++...
T Consensus       130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~s  208 (370)
T KOG1007|consen  130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNS  208 (370)
T ss_pred             EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcc
Confidence            999  77888776 888999999877663                            55667789999999999887766


Q ss_pred             ee-CCCcceEEEEec---CCEEEEEeCCCeEEEEeCCCc-cceeeccccceeEEeeeccC--CCEEEEEeCCCcEEEEEC
Q psy18018        138 LV-GHLAAVRCVQYD---GKLVVSGAYDYMVKIWNPDTE-ECLHAELQETEVELSHGYAL--RSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       138 l~-~h~~~v~~l~~~---~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~  210 (635)
                      +. +|...|..+.|+   ...|++|+.||.|++||.+.- .++..+..+..-+....+.+  +.++++++.|..|.+|..
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            65 799999999993   457999999999999999865 45667777777666666654  578999999999999975


Q ss_pred             CCC-----------------------------eEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEeccc
Q psy18018        211 TTG-----------------------------KCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNA  251 (635)
Q Consensus       211 ~~~-----------------------------~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~  251 (635)
                      ..-                             -.+.++..|.+.|++++|+   +-.|++-+.||.+.+=++.
T Consensus       289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            321                             1234567799999999995   5689999999999886643

>KOG1587|consensus

Probab=99.67  E-value=1.8e-14  Score=138.79  Aligned_cols=249  Identities=15%  Similarity=0.234  Sum_probs=156.5

Q ss_pred             eeeeeecCCC-CCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEE
Q psy18018         61 VEINWRTRPI-KDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLH  136 (635)
Q Consensus        61 ~~~iwd~~~~-~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~  136 (635)
                      ...+|+.... .+...+... .. |+|+.|+   ..+||.|..+|.|.+||+..+...+              . .....
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~-s~-v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------~-s~ls~  285 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESP-SE-VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------P-SGLSA  285 (555)
T ss_pred             eEEEEecCCCCCceEEEecC-Cc-eeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------------C-ccccc
Confidence            6778999876 333344433 33 4899999   8899999999999999998765321              0 01112


Q ss_pred             EeeCCCcceEEEEe----cCCEEEEEeCCCeEEEEeCCCccceee------cc------ccceeEEeeecc--CCCEEEE
Q psy18018        137 VLVGHLAAVRCVQY----DGKLVVSGAYDYMVKIWNPDTEECLHA------EL------QETEVELSHGYA--LRSRIVS  198 (635)
Q Consensus       137 ~l~~h~~~v~~l~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~------~~~~~~~~~~~~--~~~~l~~  198 (635)
                      ....|..+++.+.|    .+.-+++++.||.|+.|+++.-.....      ..      ..........|.  ....+++
T Consensus       286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV  365 (555)
T KOG1587|consen  286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV  365 (555)
T ss_pred             ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence            23378999999999    335699999999999998775432111      11      111112222222  2356777


Q ss_pred             EeCCCcEEEEECCCC--------eEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCcccee
Q psy18018        199 GSDDNTLKVWSATTG--------KCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR  270 (635)
Q Consensus       199 ~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  270 (635)
                      |+++|.|..-+....        +.+..+..|.++|.++.+                                       
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~---------------------------------------  406 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR---------------------------------------  406 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeec---------------------------------------
Confidence            777777665332211        111223344444544443                                       


Q ss_pred             eeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE
Q psy18018        271 HMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ  350 (635)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  350 (635)
                                                                                                     +
T Consensus       407 -------------------------------------------------------------------------------n  407 (555)
T KOG1587|consen  407 -------------------------------------------------------------------------------N  407 (555)
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           3


Q ss_pred             ecCc-EEEEecCCCeEEEEEcc-CCceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeE-------
Q psy18018        351 FDGV-HVVSGSLDTSIRVWEAE-SGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLM-------  418 (635)
Q Consensus       351 ~~~~-~l~~~~~dg~i~v~~~~-~~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~-------  418 (635)
                      |-+. .+++++ |..+++|... ...++..+..+...+++++|+   +..++++..||.+.+||+........       
T Consensus       408 PF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~  486 (555)
T KOG1587|consen  408 PFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCS  486 (555)
T ss_pred             CCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccc
Confidence            3222 233333 6677777766 555666666777779999998   56899999999999999875533222       


Q ss_pred             ----EEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        419 ----FRICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       419 ----~~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                          ...++++|+.|++|...|++.+|++..
T Consensus       487 ~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  487 PALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                223556688888888888888888853

>KOG0290|consensus

Probab=99.66  E-value=3e-14  Score=119.12  Aligned_cols=255  Identities=16%  Similarity=0.246  Sum_probs=177.2

Q ss_pred             CcEEEEecC----CCeEEEEEcc--CCceEEee-eCCCcceeEEEEeC-------CEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        353 GVHVVSGSL----DTSIRVWEAE--SGNLRHTL-MGHQSLTSGMELRN-------NILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       353 ~~~l~~~~~----dg~i~v~~~~--~~~~~~~~-~~~~~~v~~l~~~~-------~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ..+|+.|+-    .+.|.+..+.  +++.+..- ..|.-+++.+.|.+       ++|++.  +..+++|.+...+....
T Consensus        59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~  136 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE  136 (364)
T ss_pred             ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee
Confidence            345777663    3456665543  34433221 35777889998853       345544  44799999875322211


Q ss_pred             EE-------------------EEeeCCcEEEEEeCCCcEEEEeCCCCc---eeeeeccCCccEEEEEecC---CEEEEEe
Q psy18018        419 FR-------------------ICLFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMGHQSLTSGMELRN---NILVSGN  473 (635)
Q Consensus       419 ~~-------------------~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~---~~l~s~~  473 (635)
                      ..                   ...-+.+++.+.+-|-+..+||++++.   ....+-+|...|..++|..   +.+++.+
T Consensus       137 ~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg  216 (364)
T KOG0290|consen  137 LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG  216 (364)
T ss_pred             hhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec
Confidence            11                   122367899999999999999999863   4677889999999999953   5999999


Q ss_pred             CCCcEEEEECCCCceeEEecCCCcccccEEEEEe---cCCEEEEEeCC-CcEEEEECCCCc-eeeeeccceecCceeEEe
Q psy18018        474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDD-GTVKLWDVKTGE-FSTPLMSSFILNPFYFLI  548 (635)
Q Consensus       474 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d-~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~  548 (635)
                      .||.+++||++..+.-..+........+...++|   |.+++|+-..| ..|.+.|++... .+..+.           .
T Consensus       217 aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-----------~  285 (364)
T KOG0290|consen  217 ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-----------N  285 (364)
T ss_pred             CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-----------c
Confidence            9999999999987655444432223567788888   47888887765 458899988654 333333           3


Q ss_pred             ccCceecccccCC-CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEccCCCe
Q psy18018        549 YSQPLLCPHLQFN-SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGSRNGT  620 (635)
Q Consensus       549 ~~~~v~~~~~s~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~~dg~  620 (635)
                      |...|+.++|.|. ...|+++++|..+.|||+...-.-......-.....+.|..+.|++ ...+++.+.....
T Consensus       286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkl  359 (364)
T KOG0290|consen  286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKL  359 (364)
T ss_pred             CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCee
Confidence            8999999999996 4689999999999999997643201110000123567899999995 5668888887664

>KOG1524|consensus

Probab=99.66  E-value=8.1e-15  Score=132.90  Aligned_cols=169  Identities=20%  Similarity=0.274  Sum_probs=118.2

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      |+|||.-|+++++||.|++|.- +|-...++.....+|.|++|.++                               .+.
T Consensus       112 W~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~-------------------------------S~~  159 (737)
T KOG1524|consen  112 WSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN-------------------------------SNS  159 (737)
T ss_pred             cCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC-------------------------------CCc
Confidence            6777777888888888888873 45555556566778888888631                               111


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  506 (635)
                      ++.+ ..+.+.+=.+.....+-..++|.+-|.+++|+  .+++++|++|-..++||-. |..+..-.   .|..+|++++
T Consensus       160 vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~---~~ey~ITSva  234 (737)
T KOG1524|consen  160 IVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA---AEEYAITSVA  234 (737)
T ss_pred             eEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC---hhccceeeee
Confidence            1111 23344555555555666788999999999996  5699999999999999965 55444443   3899999999


Q ss_pred             ecC-CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        507 FNS-RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       507 ~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      |+. +.++.+| -+++|+   +.                   ...+.|..++|||||..+++|...|.+.+=
T Consensus       235 ~npd~~~~v~S-~nt~R~---~~-------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  235 FNPEKDYLLWS-YNTARF---SS-------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eccccceeeee-eeeeee---cC-------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            964 4444444 344552   11                   125678999999999999999998876543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.66  E-value=6e-13  Score=128.63  Aligned_cols=289  Identities=16%  Similarity=0.169  Sum_probs=196.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeee
Q psy18018        193 RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHM  272 (635)
Q Consensus       193 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  272 (635)
                      ++++++++.+|.+..+|..+|+.+...............+++.++.++.+|.+..+|..++..........         
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---------  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---------
Confidence            77899999999999999999999887665444334455678889999999999999987654322110000         


Q ss_pred             eeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec
Q psy18018        273 MQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD  352 (635)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  352 (635)
                                                                                        .. ...    ....
T Consensus       136 ------------------------------------------------------------------~~-~~~----p~v~  144 (377)
T TIGR03300       136 ------------------------------------------------------------------EV-LSP----PLVA  144 (377)
T ss_pred             ------------------------------------------------------------------ee-ecC----CEEE
Confidence                                                                              00 000    0013


Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCCcce-----eEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE------
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-----SGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI------  421 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------  421 (635)
                      +..++.++.+|.+..+|..+|+.+..........     ......++.++.+..++.+..+|..+++.......      
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            4567778889999999999999887765433221     11223356788888889999999988865543221      


Q ss_pred             ------------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        422 ------------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       422 ------------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                                  ....+..+++++.++.++.+|..+++.+......  ........++.++.++.||.+..+|..+++.+
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEE
Confidence                        1124567888889999999999999887766521  22334457788888899999999999999887


Q ss_pred             EEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      ......  ......+....+..+++++.+|.++++|..+++.+......           ...+..--...+++ |+.++
T Consensus       303 W~~~~~--~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~-----------~~~~~~sp~~~~~~-l~v~~  368 (377)
T TIGR03300       303 WKNDEL--KYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTD-----------GSGIASPPVVVGDG-LLVQT  368 (377)
T ss_pred             Eccccc--cCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-----------CCccccCCEEECCE-EEEEe
Confidence            665321  11122333346788999999999999999999988766532           11111111122444 66788


Q ss_pred             CCCeEEEE
Q psy18018        570 DDGTVKLW  577 (635)
Q Consensus       570 ~d~~v~iw  577 (635)
                      .||.|..+
T Consensus       369 ~dG~l~~~  376 (377)
T TIGR03300       369 RDGDLYAF  376 (377)
T ss_pred             CCceEEEe
Confidence            89988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0303|consensus

Probab=99.66  E-value=8.5e-15  Score=127.61  Aligned_cols=210  Identities=20%  Similarity=0.320  Sum_probs=152.7

Q ss_pred             EeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec
Q psy18018        377 HTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  453 (635)
Q Consensus       377 ~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  453 (635)
                      -.+.+|+++|..++|+   ...+++|+.|.+|.+|++..+....                          .-.+++..+.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--------------------------~ltepvv~L~  128 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--------------------------DLTEPVVELY  128 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--------------------------CcccceEEEe
Confidence            3467899999999996   5577777777777777765321110                          1126778899


Q ss_pred             cCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCC
Q psy18018        454 GHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       454 ~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      +|...|--+.|++   +.|++++.|.+|.+|++.+++.+-.+.    |...|.+++|  ||.+|++.+.|..|||||.++
T Consensus       129 gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  129 GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            9999999999964   699999999999999999999888876    8999999999  699999999999999999999


Q ss_pred             CceeeeeccceecCceeEEeccCceecccccCCCeEEEEec---CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018        529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS---DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                      ++.+..-..+....+          ..+.|-.++.++-||-   .+..+-+||...-+.-..+..+   ...+.|.-=-|
T Consensus       205 ~~~v~e~~~heG~k~----------~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---DtSnGvl~PFy  271 (472)
T KOG0303|consen  205 GTVVSEGVAHEGAKP----------ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL---DTSNGVLLPFY  271 (472)
T ss_pred             CcEeeecccccCCCc----------ceeEEeccCceeeeccccccccceeccCcccccCcceeEEe---ccCCceEEeee
Confidence            998887755433222          2334555788555542   4578999998765544344333   23445655567


Q ss_pred             CCCCeEEEE-ccCCCeeEeEEEEEeee
Q psy18018        606 SETKLVCAV-GSRNGTEETKLLVLDFD  631 (635)
Q Consensus       606 s~d~~~l~~-~~~dg~~~~~l~~~d~~  631 (635)
                      .+|..++.. |-.|+.  +|-|.+.-|
T Consensus       272 D~dt~ivYl~GKGD~~--IRYyEit~d  296 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSS--IRYFEITNE  296 (472)
T ss_pred             cCCCCEEEEEecCCcc--eEEEEecCC
Confidence            888776654 445665  555555443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=3.4e-13  Score=126.65  Aligned_cols=301  Identities=16%  Similarity=0.113  Sum_probs=191.0

Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeee
Q psy18018        197 VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQ  274 (635)
Q Consensus       197 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (635)
                      ++-..++.|.+.|..+.+.+.++......-..+.+  +++++++++.||.|.++|+.+.+...                 
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~-----------------   72 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA-----------------   72 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE-----------------
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE-----------------
Confidence            45567899999999999999999865544334455  58899999999999999988754311                 


Q ss_pred             eeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc
Q psy18018        275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV  354 (635)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  354 (635)
                                                                                    ....+.....+++++||+
T Consensus        73 --------------------------------------------------------------~i~~G~~~~~i~~s~DG~   90 (369)
T PF02239_consen   73 --------------------------------------------------------------TIKVGGNPRGIAVSPDGK   90 (369)
T ss_dssp             --------------------------------------------------------------EEE-SSEEEEEEE--TTT
T ss_pred             --------------------------------------------------------------EEecCCCcceEEEcCCCC
Confidence                                                                          111223345577999999


Q ss_pred             EEEEec-CCCeEEEEEccCCceEEeeeCC-------CcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcceeEEE---
Q psy18018        355 HVVSGS-LDTSIRVWEAESGNLRHTLMGH-------QSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKLMFR---  420 (635)
Q Consensus       355 ~l~~~~-~dg~i~v~~~~~~~~~~~~~~~-------~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---  420 (635)
                      ++++++ ..+.+.++|..+.+.++.+...       ...+.++..+  .. ++++.-..+.+.+.|....+......   
T Consensus        91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence            998776 5799999999999988877543       3356666554  33 45555555888888876654333222   


Q ss_pred             -------EEeeCCcEEEEE-eCCCcEEEEeCCCCceeeeec----cCCccEEEEE-----------ecCCEEEEEeCCCc
Q psy18018        421 -------ICLFDGVHVVSG-SLDTSIRVWEAESGNLRHTLM----GHQSLTSGME-----------LRNNILVSGNADST  477 (635)
Q Consensus       421 -------~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~-----------~~~~~l~s~~~dg~  477 (635)
                             .++|++++++++ ..++.+.++|..+++....+.    .|..+...+-           -.+...++.-....
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence                   378899987665 567789999999988776553    2333443332           12222222222335


Q ss_pred             EEEEECCCCceeEEecCCCcccccEE-EEEecCCEEEEE----eCCCcEEEEECCCCceeeeeccceecCceeEEeccCc
Q psy18018        478 VKVWDIVSGQCLQTLSGRNKHQSAVT-CLQFNSRFVITS----SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       478 i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      +.+||..+.+.++++..   ...++. ....+++++++.    ...++|.++|.++.+....+...          ....
T Consensus       251 v~v~d~~~wkvv~~I~~---~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~----------~~~~  317 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPT---QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG----------PGKR  317 (369)
T ss_dssp             TT-STTTBTSEEEEEE----SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH----------HT--
T ss_pred             cccchhhcCeEEEEEEC---CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc----------CCCc
Confidence            66789899999999986   334432 223378898887    45689999999999776666431          1224


Q ss_pred             eecccccCCCeEEEEec--CCCeEEEEeCCCCceEEeee
Q psy18018        553 LLCPHLQFNSRFVITSS--DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~  589 (635)
                      +..+.|++||+++..+.  .++.|.|||.++.+.+..+.
T Consensus       318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  318 VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            88899999999766554  33479999999999998884

...

>KOG1587|consensus

Probab=99.65  E-value=2.7e-14  Score=137.60  Aligned_cols=227  Identities=16%  Similarity=0.218  Sum_probs=166.3

Q ss_pred             CCCceEEEEe-cCcEEEEecCCCeEEEEEccCCce--E----EeeeCCCcceeEEEEe----CCEEEEEeCCCcEEEEEc
Q psy18018        342 HVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL--R----HTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDI  410 (635)
Q Consensus       342 ~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~--~----~~~~~~~~~v~~l~~~----~~~l~s~~~dg~i~iwd~  410 (635)
                      ....++.|+| +...++.|+.+|.|.+||+..+..  .    .....|..+++++.|.    +.-+++++.||.|..|++
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~  322 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT  322 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence            3455667887 778899999999999999987654  2    2234688899999985    346999999999999987


Q ss_pred             cCCcce----------------------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCC--------ceeeeeccCCccEE
Q psy18018        411 VSGTKK----------------------LMFRICLFDGVHVVSGSLDTSIRVWEAESG--------NLRHTLMGHQSLTS  460 (635)
Q Consensus       411 ~~~~~~----------------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~v~  460 (635)
                      +.-...                      ....+...+...+++|+.+|.|.--+....        +....+..|.++|.
T Consensus       323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~  402 (555)
T KOG1587|consen  323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY  402 (555)
T ss_pred             cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence            543221                      111123346778999999999887443322        22335566888999


Q ss_pred             EEEec---CCEEEEEeCCCcEEEEECC-CCceeEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceee
Q psy18018        461 GMELR---NNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFST  533 (635)
Q Consensus       461 ~~~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~  533 (635)
                      ++.++   ...+++++ |.+++||... ...++..+..   +...+++++|+   ...++++..||.|.+||+.......
T Consensus       403 ~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  403 AVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             eeecCCCccceeeeec-cceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence            99875   34666666 9999999987 6666666665   66679999995   6789999999999999998654322


Q ss_pred             eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      .....         ......+.+.|+++|+.|++|...|++.+|++..
T Consensus       479 v~s~~---------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  479 VLSQK---------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccc---------ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            22111         1244567778888999999999999999999964

>KOG4227|consensus

Probab=99.64  E-value=5.2e-14  Score=122.61  Aligned_cols=272  Identities=15%  Similarity=0.200  Sum_probs=177.3

Q ss_pred             EEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc------cceeeccccc-eeEEeeecc-CCCEEEEEeCCCcE
Q psy18018        136 HVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE------ECLHAELQET-EVELSHGYA-LRSRIVSGSDDNTL  205 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~dg~i  205 (635)
                      ..+.+|.+.|++|.|  ++++|++|+.|..+++|+++..      +++.....++ ..+++..|. .+..+++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            345689999999999  8999999999999999998642      4444333332 445555554 45678899999999


Q ss_pred             EEEECCCCeEEEEEeC--CCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018        206 KVWSATTGKCLRTLIG--HTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ  281 (635)
Q Consensus       206 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (635)
                      ..-|+.+.+.+..+..  ..+.|+.+..+  .+.|++.+.+|.|.+||.+.....                         
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~-------------------------  184 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP-------------------------  184 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC-------------------------
Confidence            9999999888877632  23467666653  456666666666666665432100                         


Q ss_pred             cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC
Q psy18018        282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL  361 (635)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  361 (635)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (609)
T KOG4227|consen  185 --------------------------------------------------------------------------------  184 (609)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCeEEEEEccCCceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcce----------------eEEEEE
Q psy18018        362 DTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKK----------------LMFRIC  422 (635)
Q Consensus       362 dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~----------------~~~~~~  422 (635)
                                 +.+ ............+.|+   +.+|++.+..+.+-+||.......                ..-..+
T Consensus       185 -----------~~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~  252 (609)
T KOG4227|consen  185 -----------ISL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW  252 (609)
T ss_pred             -----------Cce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheee
Confidence                       000 0000111122233333   456777777777888887654321                122347


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc-------cEEEEEecC-CEEEEEeCCCcEEEEECCCC--------
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-------LTSGMELRN-NILVSGNADSTVKVWDIVSG--------  486 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~--------  486 (635)
                      +|+|..+++--....-.+||+.+..+..-...|..       .+.+++|-+ ..+++|+.+-.|++|.+...        
T Consensus       253 ~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~  332 (609)
T KOG4227|consen  253 SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQ  332 (609)
T ss_pred             CCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccc
Confidence            88888888877777777888876544322222322       455666644 46899999999999988531        


Q ss_pred             ---------------ceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECC
Q psy18018        487 ---------------QCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       487 ---------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~  527 (635)
                                     +.+..+++   |...+..+.|+  ..+|++.+-.+.+++|.-.
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrG---HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRG---HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             cCcchhhCchhheecceeEEEec---ccccccceeecCCcceEeccchhhheeccccc
Confidence                           12233444   88888899994  6788888889999999754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.64  E-value=4.8e-13  Score=126.80  Aligned_cols=260  Identities=13%  Similarity=0.183  Sum_probs=156.0

Q ss_pred             EEEecCCCeEEEEEccC-Cc--eEEeeeCCCcceeEEEEe--CCEEEEE-eCCCcEEEEEccC-Ccce----------eE
Q psy18018        356 VVSGSLDTSIRVWEAES-GN--LRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWDIVS-GTKK----------LM  418 (635)
Q Consensus       356 l~~~~~dg~i~v~~~~~-~~--~~~~~~~~~~~v~~l~~~--~~~l~s~-~~dg~i~iwd~~~-~~~~----------~~  418 (635)
                      +++...++.|.+|++.+ ++  .+..+. +.+....++++  +++|+++ ..++.|.+|++.. +...          ..
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            34446689999999964 33  334443 23456667776  5666655 4578999999863 2211          11


Q ss_pred             EEEEeeCCcEEEEEeC-CCcEEEEeCCC-Cc---eeeeeccCCccEEE--EEecCCEEE-EEeCCCcEEEEECCCCceeE
Q psy18018        419 FRICLFDGVHVVSGSL-DTSIRVWEAES-GN---LRHTLMGHQSLTSG--MELRNNILV-SGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~---~~~~~~~~~~~v~~--~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~  490 (635)
                      ...++|+++++++++. ++.+.+|++.+ +.   ....+.+.. ...+  +.+++++++ +...++.|.+||+.+...+.
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            2346789998888764 88999999974 32   223332222 2233  444566664 55567999999997633221


Q ss_pred             E-----ecCCCcccccEEEEEe--cCCEEEEEeC-CCcEEEEECCC--Cce--eeeeccceecCceeEEeccCceecccc
Q psy18018        491 T-----LSGRNKHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVKT--GEF--STPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       491 ~-----~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      .     ....  .......+.+  ++++++++.. ++.|.+|++..  ++.  ...+..    .+.. .........+.|
T Consensus       163 ~~~~~~~~~~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~----~p~~-~~~~~~~~~i~~  235 (330)
T PRK11028        163 AQEPAEVTTV--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM----MPAD-FSDTRWAADIHI  235 (330)
T ss_pred             ccCCCceecC--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec----CCCc-CCCCccceeEEE
Confidence            1     1110  1122344555  7888888876 89999999974  332  111110    0000 001112335889


Q ss_pred             cCCCeEEEEecC-CCeEEEEeCCCCc-eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC-CCeeEeEEEEEe
Q psy18018        559 QFNSRFVITSSD-DGTVKLWDVKTGE-FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR-NGTEETKLLVLD  629 (635)
Q Consensus       559 s~~~~~l~~~~~-d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~-dg~~~~~l~~~d  629 (635)
                      +||+++|+++.. ++.|.+|++.... .+.......   .......++|+|||++|+++.. +++  +.+|.+|
T Consensus       236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~---~~~~p~~~~~~~dg~~l~va~~~~~~--v~v~~~~  304 (330)
T PRK11028        236 TPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP---TETQPRGFNIDHSGKYLIAAGQKSHH--ISVYEID  304 (330)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe---ccccCCceEECCCCCEEEEEEccCCc--EEEEEEc
Confidence            999999998864 7899999996543 222221111   1134557899999999998876 665  5666555

>KOG2111|consensus

Probab=99.63  E-value=1.3e-12  Score=111.04  Aligned_cols=221  Identities=19%  Similarity=0.301  Sum_probs=145.2

Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEe
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE  442 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  442 (635)
                      ..+.+||-....++.++. ...+|.++.+..+.+++.-.. .|.+|....                              
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl~~-~I~VytF~~------------------------------  122 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVLEN-KIYVYTFPD------------------------------  122 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEecC-eEEEEEcCC------------------------------
Confidence            579999966666666654 356888888887776665332 344444431                              


Q ss_pred             CCCCceeeeeccC--CccEEEEEecC--CEEEE-EeCCCcEEEEECCCCce--eEEecCCCcccccEEEEEe--cCCEEE
Q psy18018        443 AESGNLRHTLMGH--QSLTSGMELRN--NILVS-GNADSTVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQF--NSRFVI  513 (635)
Q Consensus       443 ~~~~~~~~~~~~~--~~~v~~~~~~~--~~l~s-~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~  513 (635)
                        +.+.+..+...  .....++....  .+||. |-.-|.|+|-|+...+.  ...+..   |.+.|.|++.  +|.++|
T Consensus       123 --n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A---H~s~Iacv~Ln~~Gt~vA  197 (346)
T KOG2111|consen  123 --NPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA---HDSDIACVALNLQGTLVA  197 (346)
T ss_pred             --ChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc---ccCceeEEEEcCCccEEE
Confidence              22333333221  22244444422  23332 34558999999986654  345555   9999999999  599999


Q ss_pred             EEeCCCc-EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe-----
Q psy18018        514 TSSDDGT-VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN-----  587 (635)
Q Consensus       514 ~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~-----  587 (635)
                      |+|..|+ |||||..+|+.+.+++...         ....|.+++||||..+||++++-|++.|+.+...+.-..     
T Consensus       198 TaStkGTLIRIFdt~~g~~l~E~RRG~---------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl  268 (346)
T KOG2111|consen  198 TASTKGTLIRIFDTEDGTLLQELRRGV---------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSL  268 (346)
T ss_pred             EeccCcEEEEEEEcCCCcEeeeeecCC---------chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccc
Confidence            9999998 7999999999999887642         356799999999999999999999999998865331111     


Q ss_pred             ------ee-eccC-------CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        588 ------LV-SLDS-------GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       588 ------~~-~~~~-------~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                            +. .+..       .-..+....++|-.+...++..+.||+    .|.+.|+++
T Consensus       269 ~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgs----y~k~~f~~~  324 (346)
T KOG2111|consen  269 SFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGS----YYKFKFDPK  324 (346)
T ss_pred             cccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCc----EEEEEeccc
Confidence                  00 0000       112345566777777566666777787    555555443

>KOG1334|consensus

Probab=99.62  E-value=7e-15  Score=131.80  Aligned_cols=302  Identities=18%  Similarity=0.241  Sum_probs=201.9

Q ss_pred             EEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEE---eeeccCCCEEEEEeCCCcEEE
Q psy18018        134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VEL---SHGYALRSRIVSGSDDNTLKV  207 (635)
Q Consensus       134 ~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~~~dg~i~v  207 (635)
                      ....|..|.+.|..+.|  .|..|++++.|..|.+||...+.....+...+. .++   .+.+.....+++.+.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            44567899999999999  899999999999999999999988777665432 222   223345678999999999998


Q ss_pred             EECCC-CeE--EEEEeCCCCCeEEEEe---eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018        208 WSATT-GKC--LRTLIGHTGGVWSSQM---AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ  281 (635)
Q Consensus       208 wd~~~-~~~--~~~~~~h~~~v~~~~~---~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (635)
                      =.+.. +.+  ...+..|.++|..++.   +...|.+++.|+.+.-.|++.........   +.                
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr----------------  274 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CR----------------  274 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee---ee----------------
Confidence            77643 333  3455679999998888   47789999999999999877653211100   00                


Q ss_pred             cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEec
Q psy18018        282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGS  360 (635)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~  360 (635)
                                       ..                                    .....-....++..| +...+++|+
T Consensus       275 -----------------~~------------------------------------~~~~~v~L~~Ia~~P~nt~~faVgG  301 (559)
T KOG1334|consen  275 -----------------EA------------------------------------DEKERVGLYTIAVDPRNTNEFAVGG  301 (559)
T ss_pred             -----------------cc------------------------------------CCccceeeeeEecCCCCccccccCC
Confidence                             00                                    000000112234556 345799999


Q ss_pred             CCCeEEEEEccCCce------EEeeeC------CCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        361 LDTSIRVWEAESGNL------RHTLMG------HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       361 ~dg~i~v~~~~~~~~------~~~~~~------~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      .|..+++||...-..      +..+..      ....|++++++  +.-|.+...|-.|++++-.-+...          
T Consensus       302 ~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~----------  371 (559)
T KOG1334|consen  302 SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS----------  371 (559)
T ss_pred             hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC----------
Confidence            999999999764221      122222      22367788876  445555556666666532211100          


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCc--cEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                       -....    .+     +.....+.+++|.+  .|.++.|-   ..++++|++-|.|.||+-.+++.++.+.+   ....
T Consensus       372 -~p~~~----s~-----~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg---Dr~V  438 (559)
T KOG1334|consen  372 -EPDPS----SP-----REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG---DRHV  438 (559)
T ss_pred             -CCCCC----cc-----hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc---ccce
Confidence             00000    00     01122334788865  56677763   46999999999999999999999988887   4448


Q ss_pred             EEEEEec--CCEEEEEeCCCcEEEEECCCCc
Q psy18018        502 VTCLQFN--SRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       502 v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      |.|+...  -..||+.+-|..|+||.-.+.+
T Consensus       439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  439 VNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             EeccCCCCCCchhhccCCccceeeecCCccc
Confidence            9999985  5789999999999999875444

>KOG1272|consensus

Probab=99.62  E-value=2.8e-15  Score=133.39  Aligned_cols=258  Identities=18%  Similarity=0.240  Sum_probs=195.5

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      ..+.-+.++.+|++++.|+..|.+..+|..++++..++... ..|.++.|- ...+++..+...+.+||-...+.-..-.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~  208 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR  208 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence            33445667889999999999999999999999988877653 456677763 5555666677889999876543322211


Q ss_pred             -------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        421 -------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       421 -------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                             -|.|.--.|++++..|.++--|+.+|+++..+....+.+..|.-+  +..+-+|...|+|.+|.....+++..
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence                   266777789999999999999999999999998888877777765  45888999999999999999999988


Q ss_pred             ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      +..   |.++|.++++  +|+|++|.+.|..++|||++....+.....            ..+...++||..| +|| .+
T Consensus       289 iLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------------p~~a~~ls~Sqkg-lLA-~~  351 (545)
T KOG1272|consen  289 ILC---HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------------PHPASNLSLSQKG-LLA-LS  351 (545)
T ss_pred             HHh---cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------------CCCcccccccccc-cee-ee
Confidence            887   9999999999  599999999999999999998764443332            2355667777544 344 44


Q ss_pred             CCCeEEEEe-CCCCc--eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        570 DDGTVKLWD-VKTGE--FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       570 ~d~~v~iwd-~~~~~--~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ....|.||. .-.+.  .-..+..   ....++|..|.|.|-...|-+|..-|.
T Consensus       352 ~G~~v~iw~d~~~~s~~~~~pYm~---H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSGHGETPYMN---HRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             cCCeeeeehhhhcCCCCCCcchhh---hccCcccccceeccHHHeeeccccCCc
Confidence            455799994 32221  1111111   234569999999999999999888885

>KOG1007|consensus

Probab=99.61  E-value=1.5e-13  Score=114.88  Aligned_cols=232  Identities=17%  Similarity=0.225  Sum_probs=159.8

Q ss_pred             ceEEEEe-cCcEEEEecCC-------CeEEEEEccCC---------ceEEeee-CCCcceeEEEEe--CCEEEEEeCCCc
Q psy18018        345 DLFGFQF-DGVHVVSGSLD-------TSIRVWEAESG---------NLRHTLM-GHQSLTSGMELR--NNILVSGNADST  404 (635)
Q Consensus       345 ~~~~~s~-~~~~l~~~~~d-------g~i~v~~~~~~---------~~~~~~~-~~~~~v~~l~~~--~~~l~s~~~dg~  404 (635)
                      .-++-+| +.+.|++...+       -.+.+|.+...         +++..+. .+-+.+.|+.|.  ++.+++.. |..
T Consensus        67 w~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~  145 (370)
T KOG1007|consen   67 WDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNN  145 (370)
T ss_pred             ehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCc
Confidence            3344555 45556655442       24678987532         2223333 345588999997  34565554 889


Q ss_pred             EEEEEccCCcceeEEE---------------EEee--CCcEEEEEeCCCcEEEEeCCCCceeeeec-cCCccEEEEEecC
Q psy18018        405 VKVWDIVSGTKKLMFR---------------ICLF--DGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRN  466 (635)
Q Consensus       405 i~iwd~~~~~~~~~~~---------------~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~  466 (635)
                      |.+|++..+..+....               .++|  +++.+++ ..|+++..||+++.+....+. +|...|..+.+++
T Consensus       146 i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp  224 (370)
T KOG1007|consen  146 IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP  224 (370)
T ss_pred             eEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence            9999998776531111               1344  5555554 468999999999987766654 5888999999987


Q ss_pred             C---EEEEEeCCCcEEEEECCCC-ceeEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018        467 N---ILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSF  539 (635)
Q Consensus       467 ~---~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  539 (635)
                      +   +|+++++||.|+|||.+.. .++.++.+   |...|.++.|+   .+++++++.|..|.+|...+-.....+....
T Consensus       225 nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~  301 (370)
T KOG1007|consen  225 NKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED  301 (370)
T ss_pred             CceEEEEEcCCCccEEEEeccCCCccccccCC---CceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc
Confidence            6   8999999999999999754 46667776   99999999995   7899999999999999875422111110000


Q ss_pred             ------------ec------CceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCC
Q psy18018        540 ------------IL------NPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       540 ------------~~------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~  581 (635)
                                  ..      .-..+-.|...|.+++||. |.-++|+-+.||.+.|=.++.
T Consensus       302 dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  302 DESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                        00      0113456888999999987 556778889999998876653

>KOG2110|consensus

Probab=99.61  E-value=2.6e-12  Score=111.62  Aligned_cols=182  Identities=14%  Similarity=0.203  Sum_probs=142.2

Q ss_pred             eEEEEecCcEEEEecCC--CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE--
Q psy18018        346 LFGFQFDGVHVVSGSLD--TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI--  421 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--  421 (635)
                      ++..-....++|..+.+  ..+++++...+..+..+.- ...|.++.++.+.|+++-.+. |.+||+++-+.......  
T Consensus        49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~  126 (391)
T KOG2110|consen   49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTP  126 (391)
T ss_pred             EEEeecccceeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccC
Confidence            33334445555555443  4588999888887776643 468999999988888887776 99999987765544433  


Q ss_pred             --------Eee--CCcEEEEE--eCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCc-EEEEECCCC
Q psy18018        422 --------CLF--DGVHVVSG--SLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADST-VKVWDIVSG  486 (635)
Q Consensus       422 --------~~~--~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~-i~iwd~~~~  486 (635)
                              +++  .+.+++.-  ...|.|.+||..+-+....+..|++.+.++++  +|.+||++++.|+ ||++.+.+|
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence                    333  33356553  34689999999999999999999999999998  5779999999998 789999999


Q ss_pred             ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      +.+.+++... ....|.+++|  ++++|++.+..++|++|.++...
T Consensus       207 ~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  207 QKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             cEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            9999998633 2567889999  68999999999999999998755

>KOG0290|consensus

Probab=99.61  E-value=4.8e-14  Score=117.92  Aligned_cols=200  Identities=18%  Similarity=0.173  Sum_probs=144.2

Q ss_pred             cccccceEEEEEecCCCCCCC---ceeecCCcchheeeccceeeeeeecCCCC----CCceee-----ccCcceEEEEEE
Q psy18018         22 KGHDDHVITCLQFSGKSFPCE---SFIRSSSPWKALFMSHRSVEINWRTRPIK----DPKVLK-----GHDDHVITCLQF   89 (635)
Q Consensus        22 ~gh~~~vi~~~~~s~~~~~~~---~~la~~~~~~~~~~~~~~~~~iwd~~~~~----~~~~l~-----~h~~~vi~~~~~   89 (635)
                      ..|.-++ +.+.|.|++  .|   .+||+.++          .+++|.+...+    +...|.     .+..+ ++++.|
T Consensus        93 fd~~YP~-tK~~wiPd~--~g~~pdlLATs~D----------~LRlWri~~ee~~~~~~~~L~~~kns~~~aP-lTSFDW  158 (364)
T KOG0290|consen   93 FDHPYPV-TKLMWIPDS--KGVYPDLLATSSD----------FLRLWRIGDEESRVELQSVLNNNKNSEFCAP-LTSFDW  158 (364)
T ss_pred             CCCCCCc-cceEecCCc--cccCcchhhcccC----------eEEEEeccCcCCceehhhhhccCcccccCCc-cccccc
Confidence            5899999 999999662  22   46777653          34469877422    222232     23334 489999


Q ss_pred             c---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCe
Q psy18018         90 S---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYM  163 (635)
Q Consensus        90 s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~  163 (635)
                      +   .+++.+.|-|-+..|||+++|.                  .+.....|-+|..+|..++|   .-+.+|+.+.||+
T Consensus       159 ne~dp~~igtSSiDTTCTiWdie~~~------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS  220 (364)
T KOG0290|consen  159 NEVDPNLIGTSSIDTTCTIWDIETGV------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS  220 (364)
T ss_pred             ccCCcceeEeecccCeEEEEEEeecc------------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCc
Confidence            8   8899999999999999988762                  23345567799999999999   3568999999999


Q ss_pred             EEEEeCCCccce---eeccccceeEEeeecc--CCCEEEEEeC-CCcEEEEECCC-CeEEEEEeCCCCCeEEEEe---eC
Q psy18018        164 VKIWNPDTEECL---HAELQETEVELSHGYA--LRSRIVSGSD-DNTLKVWSATT-GKCLRTLIGHTGGVWSSQM---AG  233 (635)
Q Consensus       164 v~iwd~~~~~~~---~~~~~~~~~~~~~~~~--~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~---~~  233 (635)
                      ||++|++..+..   .+-...........+.  +-+++++-.. ...|.+.|++. ..++..+++|.+.|..++|   +.
T Consensus       221 vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~  300 (364)
T KOG0290|consen  221 VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS  300 (364)
T ss_pred             EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC
Confidence            999999876532   2222212222222222  2345555444 45799999986 5778899999999999999   47


Q ss_pred             CEEEEeeCceeEEEecccce
Q psy18018        234 NIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       234 ~~l~s~~~dg~i~~w~~~~~  253 (635)
                      ..+.|+|.|..+.+||+..-
T Consensus       301 ~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  301 SHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             ceeeecCCcceEEEEecccc
Confidence            89999999999999998763

>KOG2321|consensus

Probab=99.60  E-value=2.6e-13  Score=124.42  Aligned_cols=267  Identities=15%  Similarity=0.176  Sum_probs=185.8

Q ss_pred             ccccccCCCceEEEEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC--EEEEEeCCCcEEEEEccC
Q psy18018        336 HRNKKTHVPDLFGFQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       336 ~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~  412 (635)
                      +..........+.++|||+++ ++|...-.|++||+.+-.+...-......|.....+.+  .++.-..|..|.+.....
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            344455566678899999985 67778899999999866554333222334444444432  344445566665543222


Q ss_pred             CcceeEE-------EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEEC
Q psy18018        413 GTKKLMF-------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI  483 (635)
Q Consensus       413 ~~~~~~~-------~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~  483 (635)
                      ......+       ..-.|.- -|..++....|+-++++.|..+..+....+.++++..+  ..+|++|+.+|.|..||.
T Consensus       126 ~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             eeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            1111111       1111222 25666667789999999999999998888888888875  468999999999999999


Q ss_pred             CCCceeEEecCCCc---cc-----ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCce
Q psy18018        484 VSGQCLQTLSGRNK---HQ-----SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL  553 (635)
Q Consensus       484 ~~~~~~~~~~~~~~---~~-----~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v  553 (635)
                      ++...+..+.....   +.     ..|+++.|  +|-.+++|..+|.+.+||+++.+.+..-..          ...-+|
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh----------~~e~pi  274 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH----------GYELPI  274 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc----------CCccce
Confidence            98777666653211   22     34999999  378899999999999999998875543322          245678


Q ss_pred             ecccccCC--CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        554 LCPHLQFN--SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       554 ~~~~~s~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ..+.|-+.  +..+++. ....++|||-.+|+....+.      ....+..+++-|++-++.++-+++.
T Consensus       275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE------pt~~lND~C~~p~sGm~f~Ane~~~  336 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE------PTSDLNDFCFVPGSGMFFTANESSK  336 (703)
T ss_pred             eeecccccCCCceEEec-chHHhhhcccccCCceeecc------ccCCcCceeeecCCceEEEecCCCc
Confidence            88888765  4455544 45689999999999988883      2344889999999999999998876

>KOG1240|consensus

Probab=99.59  E-value=3.3e-13  Score=134.85  Aligned_cols=333  Identities=17%  Similarity=0.172  Sum_probs=200.6

Q ss_pred             EECCCCeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccce
Q psy18018        208 WSATTGKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF  284 (635)
Q Consensus       208 wd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (635)
                      |+. .|..+..+..|...+..++..   +.+++|||.||+|++|+...-.....                          
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------------------------- 1086 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------------------------- 1086 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------------------
Confidence            554 478888898999999888873   57999999999999999765211000                          


Q ss_pred             eeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCe
Q psy18018        285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTS  364 (635)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  364 (635)
                             .....+.+                                      ...+.....+...+.+..+|+++.||.
T Consensus      1087 -------s~rS~lty--------------------------------------s~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1087 -------SARSELTY--------------------------------------SPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             -------eeeeeEEE--------------------------------------eccCCceEEEEeccCCCeEEEEcCCCe
Confidence                   00000000                                      012233345567778999999999999


Q ss_pred             EEEEEccCCc-------eEEeeeCC-CcceeEE-EEe---CC-EEEEEeCCCcEEEEEccCCcc-----------eeEEE
Q psy18018        365 IRVWEAESGN-------LRHTLMGH-QSLTSGM-ELR---NN-ILVSGNADSTVKVWDIVSGTK-----------KLMFR  420 (635)
Q Consensus       365 i~v~~~~~~~-------~~~~~~~~-~~~v~~l-~~~---~~-~l~s~~~dg~i~iwd~~~~~~-----------~~~~~  420 (635)
                      |++.+++..+       +.+....+ .+.+..+ ++.   .. .++.+..-+.+..||+.....           .....
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            9999987521       11112222 2233333 332   44 788888999999999876532           23344


Q ss_pred             EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEec---C--CEEEEEe--CCCcEEEEECCCCceeEEe
Q psy18018        421 ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR---N--NILVSGN--ADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~---~--~~l~s~~--~dg~i~iwd~~~~~~~~~~  492 (635)
                      +.+|.+.+++.|+..|.+.+||++-+.++....- +..++.-+..+   +  ...++++  ..+.|.+|++.+|.+...+
T Consensus      1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            5788999999999999999999998877766542 34566655542   3  3444444  5788999999988766555


Q ss_pred             cCCC----------------ccccc-EE-EEEecCCEEEEEeCCCcEEEEECCCCceee-eeccceecCceeEEeccCce
Q psy18018        493 SGRN----------------KHQSA-VT-CLQFNSRFVITSSDDGTVKLWDVKTGEFST-PLMSSFILNPFYFLIYSQPL  553 (635)
Q Consensus       493 ~~~~----------------~~~~~-v~-~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v  553 (635)
                      ....                ++... +. +++--+..+.+|+.|..|+.||....+... ...+.           +...
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~-----------s~~~ 1350 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGP-----------STSY 1350 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCc-----------cccc
Confidence            4320                01111 11 122236789999999999999998765431 11110           0111


Q ss_pred             ecccccCCCeEEEEecCCCeE------EEEeCC---CCceEEeeeeccCCCCCceEEEEEeCCCC-eEEEEccCCCeeEe
Q psy18018        554 LCPHLQFNSRFVITSSDDGTV------KLWDVK---TGEFIRNLVSLDSGGSGGVVWRIRASETK-LVCAVGSRNGTEET  623 (635)
Q Consensus       554 ~~~~~s~~~~~l~~~~~d~~v------~iwd~~---~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~l~~~~~dg~~~~  623 (635)
                      .....+. +.-++.++.--..      .+=+..   ..+.+......+...|..+|+.|++-.+. .+|++++.||.  +
T Consensus      1351 ~~~~~s~-~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~--I 1427 (1431)
T KOG1240|consen 1351 STNSESY-DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGV--I 1427 (1431)
T ss_pred             cccchhc-cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCe--e
Confidence            1111111 1112222111000      000111   11122222233345788899999987655 59999999998  7


Q ss_pred             EEE
Q psy18018        624 KLL  626 (635)
Q Consensus       624 ~l~  626 (635)
                      +||
T Consensus      1428 kiW 1430 (1431)
T KOG1240|consen 1428 KIW 1430 (1431)
T ss_pred             eec
Confidence            777

>KOG4497|consensus

Probab=99.58  E-value=2.6e-13  Score=115.67  Aligned_cols=362  Identities=14%  Similarity=0.155  Sum_probs=230.4

Q ss_pred             EEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCC-EEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018        146 RCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRS-RIVSGSDDNTLKVWSATTGKCLRTLIGHTG  224 (635)
Q Consensus       146 ~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  224 (635)
                      -+++.+|+++|+++.- .+.|-|..+-+..+-+..-..+.......+.- .|.....++.|.+|++...+--..+.....
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            3444499999999876 78888988877655444433333333333333 345567888999999998888888888888


Q ss_pred             CeEEEEee--C-CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        225 GVWSSQMA--G-NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       225 ~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      ++.++.|+  | ..|.+..-|-.|.+|++.+......                                           
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-------------------------------------------  129 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-------------------------------------------  129 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-------------------------------------------
Confidence            99999995  5 4666777899999999877543211                                           


Q ss_pred             chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCe---EEEEEccCCceEEe
Q psy18018        302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTS---IRVWEAESGNLRHT  378 (635)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---i~v~~~~~~~~~~~  378 (635)
                                                          ....+....++|+|||++.+..+....   +.+..-..-..++.
T Consensus       130 ------------------------------------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~  173 (447)
T KOG4497|consen  130 ------------------------------------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE  173 (447)
T ss_pred             ------------------------------------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence                                                112233456789999999888775422   22222222334555


Q ss_pred             eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCc--------ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018        379 LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGT--------KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH  450 (635)
Q Consensus       379 ~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  450 (635)
                      +...+...+.+.|+++       +..+.+||.--..        .......++|.+++|++|+.|+.+++.|--+.+...
T Consensus       174 f~~dT~DltgieWsPd-------g~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  174 FKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             cCCCcccccCceECCC-------CcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence            6666667778888732       2233444432221        122334578999999999999999998765554443


Q ss_pred             eeccCCcc--------------------EEEEEecCCEEEEEeCCCcEEEEECCC--------CceeEEecCCC---ccc
Q psy18018        451 TLMGHQSL--------------------TSGMELRNNILVSGNADSTVKVWDIVS--------GQCLQTLSGRN---KHQ  499 (635)
Q Consensus       451 ~~~~~~~~--------------------v~~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~---~~~  499 (635)
                      ++- |-..                    ..++++.+.       |-...+|....        ...+..++.+.   ...
T Consensus       247 efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~-------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk  318 (447)
T KOG4497|consen  247 EFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT-------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK  318 (447)
T ss_pred             hhc-cchhccCchhhhhhhhhcchhhhcccccccCCC-------ccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence            331 1111                    112333221       22222332221        11112222111   123


Q ss_pred             ccEEEEEe--cCCEEEEEeCC--CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEE
Q psy18018        500 SAVTCLQF--NSRFVITSSDD--GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVK  575 (635)
Q Consensus       500 ~~v~~~~~--~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~  575 (635)
                      ..+.-++|  |..++++-.+.  +.+-+||++..++...+..            ..+|....|.|....|+.+.....++
T Consensus       319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ------------k~piraf~WdP~~prL~vctg~srLY  386 (447)
T KOG4497|consen  319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ------------KHPIRAFEWDPGRPRLVVCTGKSRLY  386 (447)
T ss_pred             cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh------------ccceeEEEeCCCCceEEEEcCCceEE
Confidence            44566777  57777776533  5689999998876666554            56889999999988888887788899


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      +|.......+...      ..+-.|..+.|.-+|+.++..+.|..
T Consensus       387 ~W~psg~~~V~vP------~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  387 FWAPSGPRVVGVP------KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEcCCCceEEecC------CCCceeeeEEecCCCcEEEEEcCCce
Confidence            9998764444333      34468999999999999999999974

>KOG2394|consensus

Probab=99.58  E-value=4.5e-14  Score=128.29  Aligned_cols=168  Identities=15%  Similarity=0.324  Sum_probs=125.2

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeec----cCCccEEEEEe---cCCEEEEEeCCCcEEEEECCC-----------
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----------  485 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~-----------  485 (635)
                      +++--++.|-.-|.+.+.|....+....+.    -.+..|+++.|   +...++.+-.+|.+++||..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455567778888888888776532222121    12467888888   456888888999999997531           


Q ss_pred             ---CceeEEecCCC-----------cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEec
Q psy18018        486 ---GQCLQTLSGRN-----------KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       486 ---~~~~~~~~~~~-----------~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  549 (635)
                         +..........           .....|..++|  ||++||+.+.||.+||||..+.+++..++.           +
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-----------Y  331 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-----------Y  331 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-----------h
Confidence               11111111000           02345666777  799999999999999999999887776654           4


Q ss_pred             cCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      -+...|++|||||+||++|++|--|.||.+..++.+..=     .+|.+.|..|+|.|
T Consensus       332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-----qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-----QGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-----cccccceeeEeecc
Confidence            678999999999999999999999999999999988877     69999999999984

>KOG0771|consensus

Probab=99.58  E-value=3.3e-14  Score=125.53  Aligned_cols=193  Identities=19%  Similarity=0.283  Sum_probs=132.2

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      .+++++++|..+++|+.||.+|+|+..+...+.....|...|.++.|+  +.+|++.+.| ..++|+.            
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~------------  214 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSV------------  214 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEe------------
Confidence            789999999999999999999999988888888888999999999987  3355555555 4555554            


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc--cEEEEEe--cC---C--EEEEEeCCCcEEEEECCCCceeE--E
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMEL--RN---N--ILVSGNADSTVKVWDIVSGQCLQ--T  491 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~--~~---~--~l~s~~~dg~i~iwd~~~~~~~~--~  491 (635)
                                           .++..++.......  ....+.|  ++   .  +++....-+.|+.||+.....-.  .
T Consensus       215 ---------------------~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~  273 (398)
T KOG0771|consen  215 ---------------------NTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR  273 (398)
T ss_pred             ---------------------ccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence                                 44433333221110  1111122  12   1  12222333455555543221101  1


Q ss_pred             ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      ..........|++++.  +|++++.|+.||.|.|++..+.+.+.-.+.          .|...|+.++|+||.+++++.+
T Consensus       274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~----------aH~~~VT~ltF~Pdsr~~~svS  343 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE----------AHLGFVTGLTFSPDSRYLASVS  343 (398)
T ss_pred             hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh----------hheeeeeeEEEcCCcCcccccc
Confidence            1111113446888887  799999999999999999998887766654          4888999999999999999999


Q ss_pred             CCCeEEEEeCCC
Q psy18018        570 DDGTVKLWDVKT  581 (635)
Q Consensus       570 ~d~~v~iwd~~~  581 (635)
                      .|....|..+.-
T Consensus       344 s~~~~~v~~l~v  355 (398)
T KOG0771|consen  344 SDNEAAVTKLAV  355 (398)
T ss_pred             cCCceeEEEEee
Confidence            999999888764

>KOG3881|consensus

Probab=99.58  E-value=2.3e-13  Score=118.94  Aligned_cols=236  Identities=13%  Similarity=0.182  Sum_probs=171.3

Q ss_pred             EEEEecCCCeEEEEEccCCceEE------eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCc-----ce-------
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRH------TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGT-----KK-------  416 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~------~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~-----~~-------  416 (635)
                      .+...+.+..+..+.........      ........|..++.....|++|-.+|.+.+|....+.     ..       
T Consensus        71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g  150 (412)
T KOG3881|consen   71 VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPG  150 (412)
T ss_pred             EeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCc
Confidence            34433356666666665544433      3345567888888888999999999999999988443     11       


Q ss_pred             -eEEEEEeeCCcEEEEEeCC--CcEEEEeCCCCceeeeeccCCc---------cEEEEEe-c---CCEEEEEeCCCcEEE
Q psy18018        417 -LMFRICLFDGVHVVSGSLD--TSIRVWEAESGNLRHTLMGHQS---------LTSGMEL-R---NNILVSGNADSTVKV  480 (635)
Q Consensus       417 -~~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~---------~v~~~~~-~---~~~l~s~~~dg~i~i  480 (635)
                       ........+...+++|+..  ..+.+||+++.+.+..-+.-..         +++++.| .   +..+++++.-+.+++
T Consensus       151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~  230 (412)
T KOG3881|consen  151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRL  230 (412)
T ss_pred             eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEE
Confidence             1111122345567778988  8899999998855544332221         3445555 2   458999999999999


Q ss_pred             EECCCC-ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccc
Q psy18018        481 WDIVSG-QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH  557 (635)
Q Consensus       481 wd~~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  557 (635)
                      ||.+.+ +++..+..   ...+++++..  +++++++|..-+.+..||++.++.......          ...+.|+++.
T Consensus       231 YDt~~qRRPV~~fd~---~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k----------g~tGsirsih  297 (412)
T KOG3881|consen  231 YDTRHQRRPVAQFDF---LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK----------GITGSIRSIH  297 (412)
T ss_pred             ecCcccCcceeEecc---ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC----------CccCCcceEE
Confidence            999865 45666665   5667777776  799999999999999999999987765222          2578899999


Q ss_pred             ccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCC
Q psy18018        558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETK  609 (635)
Q Consensus       558 ~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  609 (635)
                      .+|..++||+++-|..|||+|+++.+++...+      ....++++.+.++-
T Consensus       298 ~hp~~~~las~GLDRyvRIhD~ktrkll~kvY------vKs~lt~il~~~~~  343 (412)
T KOG3881|consen  298 CHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY------VKSRLTFILLRDDV  343 (412)
T ss_pred             EcCCCceEEeeccceeEEEeecccchhhhhhh------hhccccEEEecCCc
Confidence            99999999999999999999999988777663      34567777776653

>KOG1912|consensus

Probab=99.58  E-value=1.2e-12  Score=124.45  Aligned_cols=437  Identities=13%  Similarity=0.094  Sum_probs=263.6

Q ss_pred             EEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--------cC---
Q psy18018         85 TCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--------DG---  152 (635)
Q Consensus        85 ~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--------~~---  152 (635)
                      .++.|+ +.++|-|+..                      .|.+-|..+-+.++.+..|+..|+.+.|        .+   
T Consensus        19 ~A~Dw~~~GLiAygshs----------------------lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~   76 (1062)
T KOG1912|consen   19 NAADWSPSGLIAYGSHS----------------------LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPS   76 (1062)
T ss_pred             cccccCccceEEEecCc----------------------eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCcc
Confidence            578888 6666666532                      3444555677888999999999999999        11   


Q ss_pred             ---CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc----CC-CEEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018        153 ---KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA----LR-SRIVSGSDDNTLKVWSATTGKCLRTLIGHTG  224 (635)
Q Consensus       153 ---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  224 (635)
                         -.||++...|.|.+||...+..+..+.++.......++-    +. ..|++-.....+.+|+..+|+..........
T Consensus        77 ~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~  156 (1062)
T KOG1912|consen   77 SSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE  156 (1062)
T ss_pred             ccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence               268888889999999999988777766664443333332    22 5677778888999999999999988776666


Q ss_pred             CeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        225 GVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       225 ~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      ...++.++   ...+..-+..|.+.+-+.-...          ++.......++..+                    ++.
T Consensus       157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s----------ep~~pgk~~qI~sd--------------------~Sd  206 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS----------EPDVPGKEFQITSD--------------------HSD  206 (1062)
T ss_pred             ceeeeeeCCCCcceEEEEccCceEEEEeccCCC----------CCCCCceeEEEecC--------------------ccc
Confidence            66667774   5566666666766665532211          11111111111000                    000


Q ss_pred             chhh-HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee
Q psy18018        302 PEDL-LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  380 (635)
Q Consensus       302 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~  380 (635)
                      ...+ ...+..    ...+..+.             .........-++|+|.-+.++-......+.++|++-..++....
T Consensus       207 l~~lere~at~----ns~ts~~~-------------sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp  269 (1062)
T KOG1912|consen  207 LAHLERETATG----NSTTSTPA-------------SAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP  269 (1062)
T ss_pred             hhhhhhhhhcc----ccccCCCc-------------chhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence            0000 000000    00000000             00000001113467744444444445668999998777777766


Q ss_pred             CCCcceeEEEE--e--CCEEEEEeCCCcEEEEEccCCc----------------ceeEEE----------EEee-CCcEE
Q psy18018        381 GHQSLTSGMEL--R--NNILVSGNADSTVKVWDIVSGT----------------KKLMFR----------ICLF-DGVHV  429 (635)
Q Consensus       381 ~~~~~v~~l~~--~--~~~l~s~~~dg~i~iwd~~~~~----------------~~~~~~----------~~~~-~~~~l  429 (635)
                      -..+.+..+.+  +  .+.|+....||.+.+|-.+...                +....+          ...| +...+
T Consensus       270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~  349 (1062)
T KOG1912|consen  270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSAL  349 (1062)
T ss_pred             eccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhh
Confidence            65555545544  2  5689999999999999765421                111111          1112 13333


Q ss_pred             EEEeCCCcEEEEeCCCCceee-------------------------------eeccCCccEEEEEec-------------
Q psy18018        430 VSGSLDTSIRVWEAESGNLRH-------------------------------TLMGHQSLTSGMELR-------------  465 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~-------------------------------~~~~~~~~v~~~~~~-------------  465 (635)
                      +.--.+|...+|.+.+++...                               .-.+|.+..++...+             
T Consensus       350 avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~  429 (1062)
T KOG1912|consen  350 AVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG  429 (1062)
T ss_pred             hhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC
Confidence            344456666677666443110                               001344444433221             


Q ss_pred             C-------CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecC-CEEEEEeC----------CCcEEEEECC
Q psy18018        466 N-------NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS-RFVITSSD----------DGTVKLWDVK  527 (635)
Q Consensus       466 ~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~----------d~~i~vwd~~  527 (635)
                      +       .+++.|...|+|.++|+.++..-+.+..   |...|.++.|-| ..|++.+.          -+.+.+-|++
T Consensus       430 ~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv---ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLr  506 (1062)
T KOG1912|consen  430 GNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV---HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLR  506 (1062)
T ss_pred             CCccceeeeeEEeecCCceEEEEEecchhhhhhhcc---cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcc
Confidence            1       2789999999999999999988888887   999999999943 33444332          2457788999


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      +|.... ++..  .     .....+|..+..|..++||+..-.|.-+.+||+++..+++.+.     ..-.-|+.|.|+
T Consensus       507 tGlsk~-fR~l--~-----~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS-----~a~P~it~leWs  572 (1062)
T KOG1912|consen  507 TGLSKR-FRGL--Q-----KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMS-----LALPLITVLEWS  572 (1062)
T ss_pred             cccccc-cccC--C-----CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHh-----hcCCcEEEEeec
Confidence            886432 2211  0     1135689999999999999999999999999998877765552     111237777777

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=1.3e-11  Score=116.03  Aligned_cols=305  Identities=12%  Similarity=0.043  Sum_probs=185.5

Q ss_pred             cEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee
Q psy18018        112 KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG  189 (635)
Q Consensus       112 ~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  189 (635)
                      ...+++-..+|.|.+.|.++.+.+..+......-..+.|  ||+++++++.||.|.++|+.+++.+.+............
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            334556667788888888899999999865554344666  899999999999999999999999998888877777777


Q ss_pred             ccCCCEEEEEe-CCCcEEEEECCCCeEEEEEeCC-------CCCeEEEEe--eCC-EEEEeeCceeEEEecccceeeecc
Q psy18018        190 YALRSRIVSGS-DDNTLKVWSATTGKCLRTLIGH-------TGGVWSSQM--AGN-IIISGSTDRTLKGWSNAERILAIG  258 (635)
Q Consensus       190 ~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~--~~~-~l~s~~~dg~i~~w~~~~~~~~~~  258 (635)
                      .+++.+++++. ..+.+.++|.++.++++.+...       ...+.++..  ... ++++.-.-+.|.+-|.........
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            78888888775 6899999999999999887543       234555544  234 444545557776666544211000


Q ss_pred             ccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccc
Q psy18018        259 QLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRN  338 (635)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (635)
                      ..                                                                             .
T Consensus       166 ~~-----------------------------------------------------------------------------i  168 (369)
T PF02239_consen  166 TT-----------------------------------------------------------------------------I  168 (369)
T ss_dssp             EE-----------------------------------------------------------------------------E
T ss_pred             ee-----------------------------------------------------------------------------e
Confidence            00                                                                             0


Q ss_pred             cccCCCceEEEEecCcEEEEe-cCCCeEEEEEccCCceEEeee----CCCcceeEEE-------E----eCCEEEEEeCC
Q psy18018        339 KKTHVPDLFGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLM----GHQSLTSGME-------L----RNNILVSGNAD  402 (635)
Q Consensus       339 ~~~~~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~----~~~~~v~~l~-------~----~~~~l~s~~~d  402 (635)
                      .......-..++|++++++++ ..+..|.++|..+++.+..+.    .|..+...+-       |    .+...++.-..
T Consensus       169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~  248 (369)
T PF02239_consen  169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT  248 (369)
T ss_dssp             E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-
T ss_pred             cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccC
Confidence            000111123588999887664 556789999999887766543    2333333222       1    12222222222


Q ss_pred             CcEEEEEccCCcceeEEE--------EEeeCCcEEEEE----eCCCcEEEEeCCCCceeeeeccCCc-cEEEEEec--CC
Q psy18018        403 STVKVWDIVSGTKKLMFR--------ICLFDGVHVVSG----SLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELR--NN  467 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~--------~~~~~~~~l~~~----~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~  467 (635)
                      ..+.+|+...-+......        ..+|+++++.+.    ...++|.++|.++.+...++....+ .+..+.|+  |+
T Consensus       249 ~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~  328 (369)
T PF02239_consen  249 DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK  328 (369)
T ss_dssp             -TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS
T ss_pred             CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC
Confidence            344456655544444433        358999999998    4558999999999988777754332 47777774  55


Q ss_pred             EEE-EE-eCCCcEEEEECCCCceeEEec
Q psy18018        468 ILV-SG-NADSTVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       468 ~l~-s~-~~dg~i~iwd~~~~~~~~~~~  493 (635)
                      .+. |. ..++.|.+||..+.+.+..+.
T Consensus       329 ~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  329 EVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            433 33 334479999999999988886

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.55  E-value=1.4e-11  Score=116.74  Aligned_cols=227  Identities=12%  Similarity=0.137  Sum_probs=139.6

Q ss_pred             CceEEEEecCcEEEEec-CCCeEEEEEcc-CCce--EEeeeCCCcceeEEEEe--CCEEEEEe-CCCcEEEEEccCCc--
Q psy18018        344 PDLFGFQFDGVHVVSGS-LDTSIRVWEAE-SGNL--RHTLMGHQSLTSGMELR--NNILVSGN-ADSTVKVWDIVSGT--  414 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~-~dg~i~v~~~~-~~~~--~~~~~~~~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~~--  414 (635)
                      ...++++|++++|++++ .++.|.+|++. ++..  +.... .......++++  ++.+++++ .++.+.+|++++..  
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~  115 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP  115 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC
Confidence            34567999999987764 47889999986 3332  22221 22345677776  55666665 58899999986421  


Q ss_pred             --cee--------EEEEEeeCCcEEEEEe-CCCcEEEEeCCCCceee-------eeccCCccEEEEE--ecCCEEEEEeC
Q psy18018        415 --KKL--------MFRICLFDGVHVVSGS-LDTSIRVWEAESGNLRH-------TLMGHQSLTSGME--LRNNILVSGNA  474 (635)
Q Consensus       415 --~~~--------~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-------~~~~~~~~v~~~~--~~~~~l~s~~~  474 (635)
                        ...        ....++|+++++++++ .++.|.+||+.+...+.       ..... .....+.  .+++++++++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        116 VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEec
Confidence              111        1123788998886555 56999999997633221       11111 2233444  46678877776


Q ss_pred             -CCcEEEEECCC--C--ceeEEecCCC---cccccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCceeeeeccceecCc
Q psy18018        475 -DSTVKVWDIVS--G--QCLQTLSGRN---KHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSFILNP  543 (635)
Q Consensus       475 -dg~i~iwd~~~--~--~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~  543 (635)
                       +++|.+|++..  +  +.+..+....   .+......+.+  ++++++++.. ++.|.+|++........+.....   
T Consensus       195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~---  271 (330)
T PRK11028        195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP---  271 (330)
T ss_pred             CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe---
Confidence             89999999973  2  2233332210   01111223444  7888888854 78999999965432222222111   


Q ss_pred             eeEEeccCceecccccCCCeEEEEecC-CCeEEEEeCC
Q psy18018        544 FYFLIYSQPLLCPHLQFNSRFVITSSD-DGTVKLWDVK  580 (635)
Q Consensus       544 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iwd~~  580 (635)
                           -......++|+|||++|+++.. +++|.+|++.
T Consensus       272 -----~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        272 -----TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             -----ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence                 0123456899999999998775 8999999874

>KOG0974|consensus

Probab=99.55  E-value=7.1e-12  Score=123.68  Aligned_cols=386  Identities=16%  Similarity=0.155  Sum_probs=222.7

Q ss_pred             CcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceE--EEEe----cCCEEEEEeCCCeEEEEeCCCccceeecccccee
Q psy18018        111 GKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVR--CVQY----DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEV  184 (635)
Q Consensus       111 ~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~--~l~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  184 (635)
                      .+..++.+..++.+.+||...+.....+..-.....  ++-+    +.-++++|+.-+.|.+|+.........+.++...
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            334588999999999999987776665543222211  1111    4558999999999999998844444456666665


Q ss_pred             EEeeec-cCCCEEEEEeCCCcEEEEECCCCeEEE-EEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecccccc
Q psy18018        185 ELSHGY-ALRSRIVSGSDDNTLKVWSATTGKCLR-TLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLID  262 (635)
Q Consensus       185 ~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~  262 (635)
                      .+...+ .++.++++.++|.++++|++++.+... +.-+|+..|+.+.+..+.++|++.|-+.++|+.....+.      
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~------  251 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLE------  251 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccceeh------
Confidence            555544 578899999999999999999988776 667999999999998889999999999999976553321      


Q ss_pred             ccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccC
Q psy18018        263 SCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH  342 (635)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (635)
                                                                                              ....+...
T Consensus       252 ------------------------------------------------------------------------~y~~h~g~  259 (967)
T KOG0974|consen  252 ------------------------------------------------------------------------VYDEHSGK  259 (967)
T ss_pred             ------------------------------------------------------------------------hhhhhhhc
Confidence                                                                                    11222334


Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEE------eeeCCC----------cceeEEEEeCCEEEEEeC--CCc
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH------TLMGHQ----------SLTSGMELRNNILVSGNA--DST  404 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~------~~~~~~----------~~v~~l~~~~~~l~s~~~--dg~  404 (635)
                      ....++..++...+++++.|+.+++|++.......      .+..-.          ..+...+..+..+...+.  ++.
T Consensus       260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~~~~~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~  339 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKLSILGNKGEKE  339 (967)
T ss_pred             ceeEEEEcCCceEEEeeccCcchhhhhhhccccccceeeeeeecchhhhcceeeeehHHHHHHHhcCCeEeecccccccc
Confidence            44556677788889999999999999986432110      000000          001111112222333333  333


Q ss_pred             EEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc----cEEEEEecCCEEEEEeCCCcEEE
Q psy18018        405 VKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----LTSGMELRNNILVSGNADSTVKV  480 (635)
Q Consensus       405 i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~~~dg~i~i  480 (635)
                      +...+..+.-....   ...+...++.++..+.+.+.-......+....-|..    +...+. .-.+..+-..++..+.
T Consensus       340 l~~~~~~s~~~i~~---~~~~~~~v~~~~~k~~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~-~~~~~~~~~~~g~~~~  415 (967)
T KOG0974|consen  340 LITFESDSMLRIIF---SCTNDDWVAHMSNKGDIYVAWHQNTIVITTSSLHRKLSANPISQVC-EASYVASKLIDGSIQV  415 (967)
T ss_pred             eeeeeeccCcccee---hccccceeeeccCCCcEEEEEeecccCccchhHHHHHhhCccccee-eeeeehhhccCCcchh
Confidence            33333222211111   112344566666666666654433222221111220    000000 0112222233455555


Q ss_pred             EECC-------CCc---eeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEe
Q psy18018        481 WDIV-------SGQ---CLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI  548 (635)
Q Consensus       481 wd~~-------~~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  548 (635)
                      |...       +.-   ..+.+..  .....+.++.-  ....++.|+.-+.+.++++..+...-.....    +.....
T Consensus       416 r~~~~~~~~~ad~~~i~~~~~f~~--~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~~~~~~~~----~~~~~~  489 (967)
T KOG0974|consen  416 RNLSGSLESFADVLNIRSLKEFRL--PFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLS----RSHELD  489 (967)
T ss_pred             hhhhcccccccceeEEeeeeeecc--ccCCCCcceecccCcceEEEccCcCcEEEecCCCCCccceeecc----Cccccc
Confidence            5421       111   1122221  13334555555  3568889999999999999876543333221    111111


Q ss_pred             ccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        549 YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       549 ~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      -...+....--++.-++.+.+.||...+..+..++.
T Consensus       490 ~~~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~  525 (967)
T KOG0974|consen  490 TGSSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGT  525 (967)
T ss_pred             ccccEEEEecCCCcEEEEEecCCcEEEEEEEecCcc
Confidence            223444455455666788889999999888876544

>KOG3881|consensus

Probab=99.54  E-value=2.2e-12  Score=112.86  Aligned_cols=226  Identities=12%  Similarity=0.146  Sum_probs=150.7

Q ss_pred             eeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCcc----ceeeccccceeEEeeeccC-CCEEEEEeCC--CcEEEEEC
Q psy18018        138 LVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEE----CLHAELQETEVELSHGYAL-RSRIVSGSDD--NTLKVWSA  210 (635)
Q Consensus       138 l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d--g~i~vwd~  210 (635)
                      .....++|..++.....|++|-.+|.+.+|....+.    .+..+..+.+.......+. ...+++|+..  ..+.+||+
T Consensus       101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence            345677888888866778888999999999988443    2222222222222222222 3445557777  77888888


Q ss_pred             CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                      +..+.+.+-+.-...-.              +=.+.+|+..-                                      
T Consensus       181 e~~~qiw~aKNvpnD~L--------------~LrVPvW~tdi--------------------------------------  208 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRL--------------GLRVPVWITDI--------------------------------------  208 (412)
T ss_pred             ccceeeeeccCCCCccc--------------cceeeeeeccc--------------------------------------
Confidence            77655444332211111              12345554321                                      


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec--CcEEEEecCCCeEEEE
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD--GVHVVSGSLDTSIRVW  368 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~v~  368 (635)
                                                                               .|-+.  ...|++++.-+.+++|
T Consensus       209 ---------------------------------------------------------~Fl~g~~~~~fat~T~~hqvR~Y  231 (412)
T KOG3881|consen  209 ---------------------------------------------------------RFLEGSPNYKFATITRYHQVRLY  231 (412)
T ss_pred             ---------------------------------------------------------eecCCCCCceEEEEecceeEEEe
Confidence                                                                     13333  5779999999999999


Q ss_pred             EccCCc-eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc
Q psy18018        369 EAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN  447 (635)
Q Consensus       369 ~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  447 (635)
                      |.+.++ ++..+.....++.++..                               .|+++++++|..-+.+..||++.++
T Consensus       232 Dt~~qRRPV~~fd~~E~~is~~~l-------------------------------~p~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  232 DTRHQRRPVAQFDFLENPISSTGL-------------------------------TPSGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             cCcccCcceeEeccccCcceeeee-------------------------------cCCCcEEEEecccchhheecccCce
Confidence            988553 34444444444444443                               3678888899999999999999998


Q ss_pred             eeee-eccCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        448 LRHT-LMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       448 ~~~~-~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      .... +.+-.+.+.++..++.  ++++++-|..++|+|+++.+++....    -...++++-+
T Consensus       281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY----vKs~lt~il~  339 (412)
T KOG3881|consen  281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY----VKSRLTFILL  339 (412)
T ss_pred             eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh----hhccccEEEe
Confidence            8777 8888999999998766  99999999999999999977666554    3344555554

>KOG2041|consensus

Probab=99.54  E-value=8e-12  Score=117.97  Aligned_cols=466  Identities=12%  Similarity=0.152  Sum_probs=266.9

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeec-------------CCCCCCceeeccCcceEEEEEEc--CCEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRT-------------RPIKDPKVLKGHDDHVITCLQFS--GSRI   94 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~-------------~~~~~~~~l~~h~~~vi~~~~~s--~~~l   94 (635)
                      .|++|+    ...-|||.|+.++.+-+     +. -+.             .+...-++|.||.+.| .-+.|+  .+.|
T Consensus        18 ~c~~WN----ke~gyIAcgG~dGlLKV-----lK-l~t~t~d~~~~glaa~snLsmNQtLeGH~~sV-~vvTWNe~~QKL   86 (1189)
T KOG2041|consen   18 HCAEWN----KESGYIACGGADGLLKV-----LK-LGTDTTDLNKSGLAAASNLSMNQTLEGHNASV-MVVTWNENNQKL   86 (1189)
T ss_pred             EEEEEc----ccCCeEEeccccceeEE-----EE-ccccCCcccccccccccccchhhhhccCcceE-EEEEeccccccc
Confidence            899999    88999999998876543     11 111             1122235788999988 889999  7778


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      -|...+|.|.||-+-.|.-.                   ....-....+.|.+++|  ||..++..-.||.|.+=.++..
T Consensus        87 TtSDt~GlIiVWmlykgsW~-------------------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN  147 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWC-------------------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN  147 (1189)
T ss_pred             cccCCCceEEEEeeecccHH-------------------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence            88888898888876654311                   00011123556788888  8888888888888887776665


Q ss_pred             cceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCC-------eEEEE----EeCCCCCeEEEEe----------
Q psy18018        173 ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG-------KCLRT----LIGHTGGVWSSQM----------  231 (635)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~----~~~h~~~v~~~~~----------  231 (635)
                      +............-....++...++.+-.+|.+.++|.+..       .+.-.    +......|..+.|          
T Consensus       148 RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p  227 (1189)
T KOG2041|consen  148 RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP  227 (1189)
T ss_pred             eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC
Confidence            54333322222233344455566777778899999986532       11111    1111223444444          


Q ss_pred             eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccc
Q psy18018        232 AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT  311 (635)
Q Consensus       232 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (635)
                      +...|+.+-.+|.+.+-.-.....          +...                                          
T Consensus       228 drP~lavcy~nGr~QiMR~eND~~----------Pvv~------------------------------------------  255 (1189)
T KOG2041|consen  228 DRPRLAVCYANGRMQIMRSENDPE----------PVVV------------------------------------------  255 (1189)
T ss_pred             CCCEEEEEEcCceehhhhhcCCCC----------CeEE------------------------------------------
Confidence            234677777777666554222100          0000                                          


Q ss_pred             ccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC---------CeEEEEEccCCceEEeeeCC
Q psy18018        312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD---------TSIRVWEAESGNLRHTLMGH  382 (635)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~v~~~~~~~~~~~~~~~  382 (635)
                                                 ..+-...-..|+++|..|++++.+         +.|++|.. -|..+.+++..
T Consensus       256 ---------------------------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp  307 (1189)
T KOG2041|consen  256 ---------------------------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP  307 (1189)
T ss_pred             ---------------------------ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC
Confidence                                       000111123478888888887654         35666654 37778888888


Q ss_pred             CcceeEEEEeCC-EEEEEeCCCcEEE--------------------------------EEccCCcceeEE-----EE-Ee
Q psy18018        383 QSLTSGMELRNN-ILVSGNADSTVKV--------------------------------WDIVSGTKKLMF-----RI-CL  423 (635)
Q Consensus       383 ~~~v~~l~~~~~-~l~s~~~dg~i~i--------------------------------wd~~~~~~~~~~-----~~-~~  423 (635)
                      ...|++++|.+. +-+....|+.|.+                                ||..+.+.....     .. +.
T Consensus       308 g~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~  387 (1189)
T KOG2041|consen  308 GSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFY  387 (1189)
T ss_pred             CceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehhee
Confidence            888999998733 3233334444444                                333332111000     00 00


Q ss_pred             eCCcEEEEEeCCCcEEEEeC-CC-------------CceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCc--
Q psy18018        424 FDGVHVVSGSLDTSIRVWEA-ES-------------GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQ--  487 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~-~~-------------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~--  487 (635)
                      .+--.|+.-..++.+.-++. ++             |..+ ..+-..-...-+..++..++.++.+. +.+|.....+  
T Consensus       388 ~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~l-D~kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~  465 (1189)
T KOG2041|consen  388 REHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSL-DYKYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFN  465 (1189)
T ss_pred             cccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcC-CCCcceeeeeEEEecceEEEEecccc-EEEEEEeccchh
Confidence            01111222222333322210 00             0000 00011111112334455555555543 5556432111  


Q ss_pred             -----------------------e-------eEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018        488 -----------------------C-------LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       488 -----------------------~-------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                                             .       ..++.+   ...+|.+++.+.++|..+-..|.|.-|.+.+..+......
T Consensus       466 s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G---~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~n~y~~  542 (1189)
T KOG2041|consen  466 SVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLG---SKDPICALCISDKFLMVARESGGIYRYSLNNVVLTNSYPV  542 (1189)
T ss_pred             hhhhhhhhcccccccCCCCccchhhceeeccceeecc---CCCcceeeeecceEEEEEeccCceEEEEecceeeeecccc
Confidence                                   0       012222   5678999999999999999999999999998765554432


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC---CCceEEeeeeccCCCCCceEEEEEeCCCCeEEEE
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK---TGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV  614 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~---~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~  614 (635)
                                  +..+.++++.-+...+|.-..-|.+.+.|+.   +|..+.-+.    ......||.+.|..|...|.+
T Consensus       543 ------------n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~----~~errDVWd~~Wa~dNp~llA  606 (1189)
T KOG2041|consen  543 ------------NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY----TSERRDVWDYEWAQDNPNLLA  606 (1189)
T ss_pred             ------------CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee----hhhhhhhhhhhhccCCchHHh
Confidence                        5577888888888889988888999999886   466665443    234567999999998876654


Q ss_pred             ccCCCeeEeEEEEEee
Q psy18018        615 GSRNGTEETKLLVLDF  630 (635)
Q Consensus       615 ~~~dg~~~~~l~~~d~  630 (635)
                      --+-.    ++|+++-
T Consensus       607 lmeKt----rmyifrg  618 (1189)
T KOG2041|consen  607 LMEKT----RMYIFRG  618 (1189)
T ss_pred             hhhhc----eEEEecC
Confidence            44332    4666654

>KOG4497|consensus

Probab=99.51  E-value=1.7e-12  Score=110.75  Aligned_cols=364  Identities=15%  Similarity=0.194  Sum_probs=207.5

Q ss_pred             EEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCC
Q psy18018         32 LQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATT  110 (635)
Q Consensus        32 ~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~  110 (635)
                      -.||    |+|+|+|+....+.         +|-|..+.+..+.+.- -+.+ .-+.|. .+                  
T Consensus        14 c~fS----p~g~yiAs~~~yrl---------viRd~~tlq~~qlf~c-ldki-~yieW~ads------------------   60 (447)
T KOG4497|consen   14 CSFS----PCGNYIASLSRYRL---------VIRDSETLQLHQLFLC-LDKI-VYIEWKADS------------------   60 (447)
T ss_pred             eeEC----CCCCeeeeeeeeEE---------EEeccchhhHHHHHHH-HHHh-hheeeeccc------------------
Confidence            4689    99999999986533         3578888776655443 2334 456665 11                  


Q ss_pred             CcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cC-CEEEEEeCCCeEEEEeCCCccceeeccccceeEEe
Q psy18018        111 GKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DG-KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELS  187 (635)
Q Consensus       111 ~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  187 (635)
                       ..++.....++.|.+|++...+-...+...+.++.+++|  || ..|.+...|-.|.+|.+.+.+............-.
T Consensus        61 -~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~  139 (447)
T KOG4497|consen   61 -CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGY  139 (447)
T ss_pred             -eeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeE
Confidence             112233334445555555566666777788889999999  88 46667778999999999988765544443444333


Q ss_pred             eeccCCCEEEEEeCCCc---EEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecccccccc
Q psy18018        188 HGYALRSRIVSGSDDNT---LKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSC  264 (635)
Q Consensus       188 ~~~~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~  264 (635)
                      .+.+++...+..+....   +.+..-...+.++.+...+-..+.+.|++       .+..+.+||..-+-.         
T Consensus       140 ~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-------dg~~laVwd~~Leyk---------  203 (447)
T KOG4497|consen  140 AFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-------DGNWLAVWDNVLEYK---------  203 (447)
T ss_pred             EECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-------CCcEEEEecchhhhe---------
Confidence            33444444444433211   11111222344455555555566666642       133455666221100         


Q ss_pred             CccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCC
Q psy18018        265 EPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP  344 (635)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (635)
                                                                                            ......+-..
T Consensus       204 ----------------------------------------------------------------------v~aYe~~lG~  213 (447)
T KOG4497|consen  204 ----------------------------------------------------------------------VYAYERGLGL  213 (447)
T ss_pred             ----------------------------------------------------------------------eeeeeeccce
Confidence                                                                                  0000111233


Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC----CC---------------cceeEEEEeCCEEEEE-eCCC-
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG----HQ---------------SLTSGMELRNNILVSG-NADS-  403 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~----~~---------------~~v~~l~~~~~~l~s~-~~dg-  403 (635)
                      ..++++|.++++++|+.|+.+++.+--+-+...++..    |.               -...++.|.+..+-.+ .... 
T Consensus       214 k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se  293 (447)
T KOG4497|consen  214 KFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE  293 (447)
T ss_pred             eEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence            4467999999999999999999877554433322210    00               0112233321111000 0000 


Q ss_pred             --------cEEEE------EccCCcceeEEEEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEecCC
Q psy18018        404 --------TVKVW------DIVSGTKKLMFRICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN  467 (635)
Q Consensus       404 --------~i~iw------d~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  467 (635)
                              .+.+-      |..+.+...-...+++|..++++-..  -+.+.+||++..++...+. ...+|.++.|++.
T Consensus       294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~  372 (447)
T KOG4497|consen  294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPG  372 (447)
T ss_pred             hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCC
Confidence                    01111      11112222333457888888877643  3579999998776654443 5678899999864


Q ss_pred             --EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCc
Q psy18018        468 --ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT  520 (635)
Q Consensus       468 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~  520 (635)
                        .|+.+.....+++|.......+..-.    ..-.|..+.|  +|..++..+.|..
T Consensus       373 ~prL~vctg~srLY~W~psg~~~V~vP~----~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  373 RPRLVVCTGKSRLYFWAPSGPRVVGVPK----KGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             CceEEEEcCCceEEEEcCCCceEEecCC----CCceeeeEEecCCCcEEEEEcCCce
Confidence              56666666679999987644444322    3467889999  6899999988863

>KOG2394|consensus

Probab=99.51  E-value=1.3e-12  Score=119.08  Aligned_cols=92  Identities=22%  Similarity=0.260  Sum_probs=83.3

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      +.-++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+                               
T Consensus       293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS-------------------------------  341 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS-------------------------------  341 (636)
T ss_pred             ccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc-------------------------------
Confidence            3446799999999999999999999999988888777777777888775                               


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN  466 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  466 (635)
                      |||+++++|++|.-+.||.+...+.+..-++|.++|..++||+
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            8999999999999999999999999999999999999999997

>KOG1409|consensus

Probab=99.49  E-value=4.9e-12  Score=108.78  Aligned_cols=179  Identities=20%  Similarity=0.266  Sum_probs=119.2

Q ss_pred             CCCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCC-CcE----------------------EEEEeeCCCcEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATT-GKC----------------------LLVSGSRDATLR  125 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~-~~~----------------------ll~~~~~dg~i~  125 (635)
                      ..+++.++||.+.+-.++-.. ..-+.+.+.|.++|||--.+ ++.                      .|+.|-.+|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            345678899999884344444 78899999999999996433 221                      288899999888


Q ss_pred             EEeC----CCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE
Q psy18018        126 VWHI----ESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG  199 (635)
Q Consensus       126 vwd~----~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (635)
                      -+.+    +....++....|..+|..+-|  ...++++.+.|..+.---.+.+..+.............+..  ...+.|
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~--~~~fvG  171 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA--LYAFVG  171 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee--EEEEec
Confidence            7754    344556666789999999999  67899999999988766566655444322211111000000  156667


Q ss_pred             eCCCcEEEEECC--CCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecc
Q psy18018        200 SDDNTLKVWSAT--TGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSN  250 (635)
Q Consensus       200 ~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~  250 (635)
                      ...|.|....+.  .-.++.++.+|.+.+.++.|+  ...++++..|..+.+||+
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence            777777665543  456677888898888888875  345555555555555554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=4.7e-12  Score=123.73  Aligned_cols=222  Identities=17%  Similarity=0.163  Sum_probs=148.2

Q ss_pred             CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC---CcEEEEEccCCcceeE--------EEEEeeCCcE
Q psy18018        362 DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD---STVKVWDIVSGTKKLM--------FRICLFDGVH  428 (635)
Q Consensus       362 dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~--------~~~~~~~~~~  428 (635)
                      +..|.+||..... ...+..|...+....|+  ++.++..+.+   ..|.+||+.+++....        ...++|||+.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4689999987544 45667778889999997  5677766543   3699999987653222        2348899999


Q ss_pred             EEEEe-CCCcEEE--EeCCCCceeeeeccCCccEEEEEe--cCCEEEE-EeCCCcEEEEECCCC-ceeEEecCCCccccc
Q psy18018        429 VVSGS-LDTSIRV--WEAESGNLRHTLMGHQSLTSGMEL--RNNILVS-GNADSTVKVWDIVSG-QCLQTLSGRNKHQSA  501 (635)
Q Consensus       429 l~~~~-~d~~i~~--~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s-~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~  501 (635)
                      |+.+. .+|.+.+  ||+.+++. ..+..+...+....|  +++.++. +..++...||++... .....+ .   +...
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~---~~~~  336 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G---GRGY  336 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c---CCCC
Confidence            88865 5776555  56665554 455556655655665  5665554 446788888876432 222223 2   2221


Q ss_pred             EEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC--
Q psy18018        502 VTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV--  579 (635)
Q Consensus       502 v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~--  579 (635)
                      ...+..||++++..+.++ +.+||+.+++.......             .....+.|+|||++|+.++.++...+|++  
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-------------~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-------------FLDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-------------CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            123444899998887765 66699988864321111             12245789999999999999998888876  


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      .+|+.+..+     ..+.+.+...+|+|-
T Consensus       403 ~~G~~~~~l-----~~~~g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARL-----PGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceEEc-----cCCCCCCCCcccCCC
Confidence            357777777     456677888999884

>KOG1523|consensus

Probab=99.47  E-value=1.1e-11  Score=105.52  Aligned_cols=241  Identities=13%  Similarity=0.140  Sum_probs=164.4

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCc---eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcce
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      ..+.+.++++|...++++.+...|.||......   ...++..|...|+++.|.  .+.+++++.|..            
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn------------   78 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN------------   78 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC------------
Confidence            566788999999999999999999999987654   568889999999999987  334555555544            


Q ss_pred             eEEEEEeeCCcEEEEEeCCCcEEEEeC-CC--CceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        417 LMFRICLFDGVHVVSGSLDTSIRVWEA-ES--GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~d~~i~~~d~-~~--~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                                           -++|.. ..  .++...+..++...+++.|.  ++.+++|+.-..|.+|-++..+.-..
T Consensus        79 ---------------------ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   79 ---------------------AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             ---------------------ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence                                 445544 22  23444556688888999885  56999999999999998765433211


Q ss_pred             ec-CCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeec-----cceecCc--eeEEeccCceecccccCC
Q psy18018        492 LS-GRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLM-----SSFILNP--FYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       492 ~~-~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~v~~~~~s~~  561 (635)
                      -+ ...++.+.|+++.|  ++-+|++|+.|+..|||..--.....+..     ...+...  .......+-+..+.|+|+
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence            11 12237788999999  67889999999999999743111110000     0000000  001123557889999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCce-EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        562 SRFVITSSDDGTVKLWDVKTGEF-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       562 ~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      |..|+-.+.|.++.+=|...... +....     ...-+..++.|-.+...+++|-.-+-
T Consensus       218 G~~lawv~Hds~v~~~da~~p~~~v~~~~-----~~~lP~ls~~~ise~~vv~ag~~c~P  272 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFVDAAGPSERVQSVA-----TAQLPLLSVSWISENSVVAAGYDCGP  272 (361)
T ss_pred             CCEeeEecCCCceEEeecCCCchhccchh-----hccCCceeeEeecCCceeecCCCCCc
Confidence            99999999999999999876652 33331     22367778888776666555554343

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.47  E-value=1.7e-10  Score=111.81  Aligned_cols=299  Identities=12%  Similarity=0.065  Sum_probs=194.2

Q ss_pred             ecCCEEEEEeCCCeEEEEeCCCccceeecccccee----------EEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        150 YDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEV----------ELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       150 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      +.+..++.++.+|.+.-+|..+|+.+.+.......          ...-....++.++.++.+|.+..+|..+|+.+.+.
T Consensus        67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            35778888888899999999999888765433210          00001123678889999999999999999998877


Q ss_pred             eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      ........+....++.++.+..+|.+..+|..+++..........                                   
T Consensus       147 ~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----------------------------------  191 (394)
T PRK11138        147 KVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-----------------------------------  191 (394)
T ss_pred             cCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-----------------------------------
Confidence            544332223334567788888899999999877654321110000                                   


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                        ..  ........+  +  .+..++.++.+|.+..+|..+|+.+...
T Consensus       192 ----------------------------------~~--~~~~~~sP~--v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        192 ----------------------------------SL--TLRGESAPA--T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             ----------------------------------cc--cccCCCCCE--E--ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence                                              00  000000001  1  2335667778889999999988876554


Q ss_pred             eCCCc-----------ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE-----EeeCCcEEEEEeCCCcEEEEeC
Q psy18018        380 MGHQS-----------LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI-----CLFDGVHVVSGSLDTSIRVWEA  443 (635)
Q Consensus       380 ~~~~~-----------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~l~~~~~d~~i~~~d~  443 (635)
                      .....           ........++.++.++.+|.+..+|..+++.......     ....+..++.++.++.+..+|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        232 RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             ccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEEC
Confidence            32110           0112223467788888899999999998876554332     1235677888889999999999


Q ss_pred             CCCceeeeeccCC-ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEE-EEEecCCEEEEEeCCCcE
Q psy18018        444 ESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT-CLQFNSRFVITSSDDGTV  521 (635)
Q Consensus       444 ~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~d~~i  521 (635)
                      .+++.+.....-. ....+....++.++.++.||.++..|..+|+.+...+.   ....+. .....+..|+.++.||.|
T Consensus       312 ~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---~~~~~~s~P~~~~~~l~v~t~~G~l  388 (394)
T PRK11138        312 RGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV---DSSGFLSEPVVADDKLLIQARDGTV  388 (394)
T ss_pred             CCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCcceeCCEEECCEEEEEeCCceE
Confidence            9998776543211 12233334678888999999999999999998887754   222222 223356688888999999


Q ss_pred             EEEEC
Q psy18018        522 KLWDV  526 (635)
Q Consensus       522 ~vwd~  526 (635)
                      +.++.
T Consensus       389 ~~~~~  393 (394)
T PRK11138        389 YAITR  393 (394)
T ss_pred             EEEeC
Confidence            88764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.2e-11  Score=118.96  Aligned_cols=230  Identities=13%  Similarity=0.119  Sum_probs=135.5

Q ss_pred             CCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEEeeeccCCCE
Q psy18018        121 DATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVELSHGYALRSR  195 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (635)
                      +..|.+||..... .+.+..|...+...+|  ||++|+.++.+   ..|.+||+.+++...............+.++++.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            3689999987655 5567788889999999  99999988754   4799999988753221111111122334455566


Q ss_pred             EEEEe-CCCcEEEE--ECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeee
Q psy18018        196 IVSGS-DDNTLKVW--SATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHM  272 (635)
Q Consensus       196 l~~~~-~dg~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  272 (635)
                      |+.+. .+|.+.+|  |+.+++. ..+..+...                                               
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~-----------------------------------------------  293 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP-SQLTSGAGN-----------------------------------------------  293 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe-EeeccCCCC-----------------------------------------------
Confidence            66553 46654444  4433322 122211111                                               


Q ss_pred             eeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec
Q psy18018        273 MQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD  352 (635)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  352 (635)
                                                                                             .....|+||
T Consensus       294 -----------------------------------------------------------------------~~~~~wSpD  302 (429)
T PRK01742        294 -----------------------------------------------------------------------NTEPSWSPD  302 (429)
T ss_pred             -----------------------------------------------------------------------cCCEEECCC
Confidence                                                                                   112348888


Q ss_pred             CcEEEEec-CCCeEEEEEccCCc-eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        353 GVHVVSGS-LDTSIRVWEAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       353 ~~~l~~~~-~dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      |+.++..+ .+|...+|++.... ....+ .+..  ..                               ..++|+|++++
T Consensus       303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~-------------------------------~~~SpDG~~ia  348 (429)
T PRK01742        303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YS-------------------------------AQISADGKTLV  348 (429)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CC-------------------------------ccCCCCCCEEE
Confidence            88766544 56777777764321 11111 1110  00                               12467888877


Q ss_pred             EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEEC--CCCceeEEecCCCcccccEEEEEec
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI--VSGQCLQTLSGRNKHQSAVTCLQFN  508 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~  508 (635)
                      ..+.++ +..||+.+++.......+...-.++++++++++.++.++...+|.+  .+++..+.+..   +...+...+|+
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~---~~g~~~~p~ws  424 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG---SDGQVKFPAWS  424 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC---CCCCCCCcccC
Confidence            776654 5558888776543322222222345667889999999998888875  35777777765   55566666664

>KOG1523|consensus

Probab=99.46  E-value=3.5e-12  Score=108.59  Aligned_cols=194  Identities=16%  Similarity=0.196  Sum_probs=144.7

Q ss_pred             EEeeCCcEEEEEeCCCcEEEEeCCCC---ceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCC-Cc--eeEEe
Q psy18018        421 ICLFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS-GQ--CLQTL  492 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~--~~~~~  492 (635)
                      .+.+|+..++.+..+..+.+|.....   +...++..|...|+++.|.  .+.+++++.|..-++|...+ ++  +.-.+
T Consensus        17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL   96 (361)
T KOG1523|consen   17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL   96 (361)
T ss_pred             eecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE
Confidence            34456667777777778888877654   4678899999999999986  45899999999999999843 32  22333


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      ..   ++...+++.|  .++.+|+|+....|.||-++....=-.       .......+...|+++.|+|++-+|++|+.
T Consensus        97 lR---iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV-------sKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   97 LR---INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV-------SKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             EE---eccceeeEeecCcCceEEeccCccEEEEEEEecccceeh-------hhhhCCccccceeeeeccCCcceeccccc
Confidence            33   7888999999  588999999999999998875432110       01111235778999999999999999999


Q ss_pred             CCeEEEEeC-----CC-------------CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        571 DGTVKLWDV-----KT-------------GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       571 d~~v~iwd~-----~~-------------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |+..+|+..     +.             |+++.++     ....+.+..+.|+|+|..|+-.+.|.+    +...|...
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-----~~~ggwvh~v~fs~sG~~lawv~Hds~----v~~~da~~  237 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-----SSSGGWVHGVLFSPSGNRLAWVGHDST----VSFVDAAG  237 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-----ccCCCceeeeEeCCCCCEeeEecCCCc----eEEeecCC
Confidence            999999963     11             2333333     356788999999999999999999998    55555443


Q ss_pred             C
Q psy18018        633 D  633 (635)
Q Consensus       633 ~  633 (635)
                      +
T Consensus       238 p  238 (361)
T KOG1523|consen  238 P  238 (361)
T ss_pred             C
Confidence            3

>KOG1272|consensus

Probab=99.46  E-value=3.8e-13  Score=120.09  Aligned_cols=170  Identities=19%  Similarity=0.256  Sum_probs=135.1

Q ss_pred             CcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEE-------------------EEEeeCCCcEEEEeCCCCeEEEEe
Q psy18018         80 DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL-------------------LVSGSRDATLRVWHIESGECLHVL  138 (635)
Q Consensus        80 ~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l-------------------l~~~~~dg~i~vwd~~~~~~~~~l  138 (635)
                      .... ..+.|+  |++|+.|+..|.|..+|+.+++..                   +++......++|||- .|..++.+
T Consensus       129 eFGP-Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  129 EFGP-YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             ccCC-eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeeh
Confidence            3344 578888  999999999999999999998875                   566677788999995 57777777


Q ss_pred             eCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECCCCeE
Q psy18018        139 VGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSATTGKC  215 (635)
Q Consensus       139 ~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~  215 (635)
                      +.| ..|..+.|  .--+|++++..|.++.-|+.+|+.+..+......... ...|.+..+-+|...|+|.+|.....++
T Consensus       207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            665 46788999  6778899999999999999999998887666544443 3445567788899999999999999999


Q ss_pred             EEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccc
Q psy18018        216 LRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       216 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~  252 (635)
                      +..+..|.++|.+++++  |.+++|.|.|..+++||++.
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence            99999999999999863  55666666666666666543

>KOG4547|consensus

Probab=99.45  E-value=1.4e-11  Score=114.22  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=121.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCce
Q psy18018        467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF  544 (635)
Q Consensus       467 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  544 (635)
                      ..++-|...|.|.+|+...++....+.. ..|.+.|.++.+  +-..|.+++.|+.+..|+.+....++.....      
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st-~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~------  143 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLST-DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ------  143 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEec-CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC------
Confidence            4788899999999999999998888874 348899999988  3568999999999999999999887776653      


Q ss_pred             eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC-----CeEEEEccCCC
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET-----KLVCAVGSRNG  619 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d-----~~~l~~~~~dg  619 (635)
                           ...+.+++.+||++.|++|+  +.|++||+++++.+..|     .+|.++|.+++|..+     |.++.+...-.
T Consensus       144 -----~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f-----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~  211 (541)
T KOG4547|consen  144 -----KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF-----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE  211 (541)
T ss_pred             -----CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe-----cCCCcceEEEEEEEeccccccceeeeccccc
Confidence                 56788999999999999997  57999999999999999     699999999999887     66655443332


Q ss_pred             eeEeEEEEEeeecC
Q psy18018        620 TEETKLLVLDFDVD  633 (635)
Q Consensus       620 ~~~~~l~~~d~~~~  633 (635)
                      + .+.+|..+.+.+
T Consensus       212 r-~i~~w~v~~~~k  224 (541)
T KOG4547|consen  212 R-GITVWVVEKEDK  224 (541)
T ss_pred             c-ceeEEEEEcccc
Confidence            2 366788877554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.44  E-value=7.7e-10  Score=107.33  Aligned_cols=310  Identities=14%  Similarity=0.065  Sum_probs=192.8

Q ss_pred             cCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCC-Ccce-EEEEecCCEEEEEeCCCeEEEE
Q psy18018         90 SGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH-LAAV-RCVQYDGKLVVSGAYDYMVKIW  167 (635)
Q Consensus        90 s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h-~~~v-~~l~~~~~~l~s~~~dg~v~iw  167 (635)
                      .+..++.++.++.+.-+|.++|+.            +|..+.......+... ...+ ..+..++..++.++.+|.+.-+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~al  135 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYAL  135 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEE
Confidence            466777777778787778777663            3554332211111000 0111 1234467788888899999999


Q ss_pred             eCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe-----EEEEeeCCEEEEeeCc
Q psy18018        168 NPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV-----WSSQMAGNIIISGSTD  242 (635)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~l~s~~~d  242 (635)
                      |.++|+.+.+............ ..++++++++.++.+..+|..+|+.+..........     .+....++.++.++.+
T Consensus       136 d~~tG~~~W~~~~~~~~~ssP~-v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~  214 (394)
T PRK11138        136 NAEDGEVAWQTKVAGEALSRPV-VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN  214 (394)
T ss_pred             ECCCCCCcccccCCCceecCCE-EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence            9999999887765544322222 236788889999999999999999998775432111     1112235567778888


Q ss_pred             eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCC
Q psy18018        243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN  322 (635)
Q Consensus       243 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (635)
                      |.+...|..++.............                                                        
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~--------------------------------------------------------  238 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTG--------------------------------------------------------  238 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCC--------------------------------------------------------
Confidence            888888876654322110000000                                                        


Q ss_pred             cchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCC
Q psy18018        323 LLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD  402 (635)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~d  402 (635)
                               ..............   . ..+..+++++.+|.+..+|..+|+.+.....  .....+...++.++.++.+
T Consensus       239 ---------~~~~~~~~~~~~sP---~-v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~  303 (394)
T PRK11138        239 ---------ATEIDRLVDVDTTP---V-VVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQN  303 (394)
T ss_pred             ---------ccchhcccccCCCc---E-EECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCC
Confidence                     00000000000000   0 1345667777889999999999988765432  1222345567888888999


Q ss_pred             CcEEEEEccCCcceeEEEE------Ee--eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE-EEEecCCEEEEEe
Q psy18018        403 STVKVWDIVSGTKKLMFRI------CL--FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGN  473 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~~------~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~~  473 (635)
                      |.+..+|..+++.......      .+  ..+.+++.++.+|.+.++|..+|+.+...+-....+. ...+.++.|+.++
T Consensus       304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t  383 (394)
T PRK11138        304 DRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQA  383 (394)
T ss_pred             CeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEe
Confidence            9999999988765432221      11  2466788899999999999999999887764433222 2334577899999


Q ss_pred             CCCcEEEEEC
Q psy18018        474 ADSTVKVWDI  483 (635)
Q Consensus       474 ~dg~i~iwd~  483 (635)
                      .||.++.+++
T Consensus       384 ~~G~l~~~~~  393 (394)
T PRK11138        384 RDGTVYAITR  393 (394)
T ss_pred             CCceEEEEeC
Confidence            9999988764

>KOG1409|consensus

Probab=99.40  E-value=4.9e-11  Score=102.78  Aligned_cols=236  Identities=19%  Similarity=0.305  Sum_probs=168.2

Q ss_pred             eEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccc
Q psy18018        214 KCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE  291 (635)
Q Consensus       214 ~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (635)
                      ..++.++||.+.+++...  ..+.+++.+.|.++++|--.+...                                    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------------------------------   58 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------------------------------   58 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc------------------------------------
Confidence            345667888888877665  367899999999999996433211                                    


Q ss_pred             eeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEcc
Q psy18018        292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE  371 (635)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~  371 (635)
                                                      .|.        ..........+++.+.++...|++|-..|.+.-+.+.
T Consensus        59 --------------------------------~wp--------sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   59 --------------------------------YWP--------SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             --------------------------------cCc--------hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence                                            000        0012233445566778888999999999999988764


Q ss_pred             ----CCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEee------CCcEEEEEeCCCcEE
Q psy18018        372 ----SGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLF------DGVHVVSGSLDTSIR  439 (635)
Q Consensus       372 ----~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~l~~~~~d~~i~  439 (635)
                          .....+....|...+..+.|+  ...+++.+.|..+.---.+.+....-+....+      |-.+...|...|.+.
T Consensus        99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt  178 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQIT  178 (404)
T ss_pred             hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceE
Confidence                344566777899999999997  67888888888766544444443333222111      111455666667766


Q ss_pred             EEeCC--CCceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCce-eEEecCCCcccccEEEEEe--cCCEE
Q psy18018        440 VWEAE--SGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQF--NSRFV  512 (635)
Q Consensus       440 ~~d~~--~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~l  512 (635)
                      ...+.  .-.++.++.+|...+.+++|++  .+|.+|..|..+.+||+.-.+- ..++.+   |...|..+..  .-+.+
T Consensus       179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---h~~kV~~l~~~~~t~~l  255 (404)
T KOG1409|consen  179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---HNDKVQALSYAQHTRQL  255 (404)
T ss_pred             EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---chhhhhhhhhhhhheee
Confidence            65543  3567889999999999999974  5999999999999999975443 334444   8888888877  47889


Q ss_pred             EEEeCCCcEEEEECCC
Q psy18018        513 ITSSDDGTVKLWDVKT  528 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~  528 (635)
                      ++++.||.|.+|+.+.
T Consensus       256 ~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  256 ISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeccCCCeEEEEeccc
Confidence            9999999999999874

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=2.5e-09  Score=98.03  Aligned_cols=267  Identities=12%  Similarity=0.009  Sum_probs=162.0

Q ss_pred             cCcEEEEecCC-----CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeC----------CCcEEEEEccCCcce
Q psy18018        352 DGVHVVSGSLD-----TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA----------DSTVKVWDIVSGTKK  416 (635)
Q Consensus       352 ~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~----------dg~i~iwd~~~~~~~  416 (635)
                      ++.++++....     +.|.+.|..+++.+..+..-..+-..++.+++.++++..          +..|.+||..+.+..
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            34444444433     899999999999888877544433334445666665544          789999999998766


Q ss_pred             eEEE----------------EEeeCCcEEEEEe-C-CCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcE
Q psy18018        417 LMFR----------------ICLFDGVHVVSGS-L-DTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTV  478 (635)
Q Consensus       417 ~~~~----------------~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i  478 (635)
                      ....                .+++||+++++.. . +..+.+.|+.+++.+.++.-... ..-+...+....+-+.||..
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCccEEEeecCce
Confidence            4433                4789999998776 4 68999999999999888765321 11122222222233445554


Q ss_pred             EEEECCCCceeEE-----ecCC--CcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeecccee-cCceeEEec
Q psy18018        479 KVWDIVSGQCLQT-----LSGR--NKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI-LNPFYFLIY  549 (635)
Q Consensus       479 ~iwd~~~~~~~~~-----~~~~--~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~  549 (635)
                      ....+.+......     +...  .-...+  .+.. ++++++...+ |+|.+.|+...+.......... .......-.
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence            4433322111111     1100  000112  1233 7888877776 9999999765432221110000 000000011


Q ss_pred             cCceecccccCCCeEEEEec----------CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc-C
Q psy18018        550 SQPLLCPHLQFNSRFVITSS----------DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS-R  617 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~-~  617 (635)
                      ...+.-++++|+++.+.+..          ..+.|.++|..+++.+..+.      ....+++++|+|||+ +|++.. .
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~------vG~~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE------LGHEIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe------CCCceeeEEECCCCCeEEEEeCCC
Confidence            23344489999999888743          22579999999999999883      355899999999999 888666 4


Q ss_pred             CCeeEeEEEEEeeec
Q psy18018        618 NGTEETKLLVLDFDV  632 (635)
Q Consensus       618 dg~~~~~l~~~d~~~  632 (635)
                      ++.    |.++|...
T Consensus       321 s~~----VsViD~~t  331 (352)
T TIGR02658       321 DKT----LYIFDAET  331 (352)
T ss_pred             CCc----EEEEECcC
Confidence            665    66676543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=1.4e-08  Score=93.20  Aligned_cols=201  Identities=10%  Similarity=0.098  Sum_probs=120.2

Q ss_pred             ceEEEEecCcEEEEec-C-CCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        345 DLFGFQFDGVHVVSGS-L-DTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~-~-dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      ..++++|||+++++.. . +..|.+.|+.+++.+.++.-.. ...-...++....+.+.||......+.           
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d-----------  175 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYG-----------  175 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEec-----------
Confidence            3456999999998776 3 6899999999999988876532 112222222222233344433332222           


Q ss_pred             eeCCcEEEEEeCCCcEE-----EEeCCCCceeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCC-----ceeEE
Q psy18018        423 LFDGVHVVSGSLDTSIR-----VWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSG-----QCLQT  491 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~-----~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~-----~~~~~  491 (635)
                                 .+|+..     +++.+. .+   +  ...+  .+.. ++.++.+..+ |+|.+.|+...     +....
T Consensus       176 -----------~~g~~~~~~~~vf~~~~-~~---v--~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       176 -----------TKGNPKIKPTEVFHPED-EY---L--INHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             -----------CCCceEEeeeeeecCCc-cc---c--ccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence                       222211     111100 00   0  0111  2233 5666666666 99999996432     22222


Q ss_pred             ecCCC----cccccEEEEEe--cCCEEEEEe----------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceec
Q psy18018        492 LSGRN----KHQSAVTCLQF--NSRFVITSS----------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC  555 (635)
Q Consensus       492 ~~~~~----~~~~~v~~~~~--~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  555 (635)
                      +....    -....+.-+++  +++.++...          ..+.|.++|..+++.+..+..            ...+..
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------------G~~~~~  303 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL------------GHEIDS  303 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC------------CCceee
Confidence            21110    02223333555  677777642          225799999999998887764            457888


Q ss_pred             ccccCCCe-EEEEec-CCCeEEEEeCCCCceEEeee
Q psy18018        556 PHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       556 ~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ++++||++ +|++.. .++.|.+.|..+++.++.+.
T Consensus       304 iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       304 INVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            99999999 777666 67889999999999999884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2139|consensus

Probab=99.38  E-value=4.4e-11  Score=103.74  Aligned_cols=180  Identities=17%  Similarity=0.249  Sum_probs=123.9

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEec---CCEEEEEeCCCcEEEEECCCC----cee--------EEe
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR---NNILVSGNADSTVKVWDIVSG----QCL--------QTL  492 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~----~~~--------~~~  492 (635)
                      ++++..|..|++||-.. +....++. .+..|++++|.   ...++.|+..| |.+|.....    +.+        ..+
T Consensus       113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl  190 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVL  190 (445)
T ss_pred             hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhe
Confidence            56677778888888766 44444443 45689999985   45888888876 999986531    111        112


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      +. . ...+|++++|  ||..+++++ .|..|+|||..++..+.-...           -.+.++-+.||||+.+|+.+.
T Consensus       191 ~~-p-gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-----------glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  191 QD-P-GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-----------GLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             eC-C-CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-----------CCCceeeEEEcCCCCEEEEec
Confidence            21 1 2378999999  688888887 467899999999886543322           245677899999999999999


Q ss_pred             CCCeEEEEeC-CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        570 DDGTVKLWDV-KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       570 ~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      -|+..++|.. ++....+..      -..+.|+...|+|+|+.|........   +||.+-|+.
T Consensus       258 ~davfrlw~e~q~wt~erw~------lgsgrvqtacWspcGsfLLf~~sgsp---~lysl~f~~  312 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWI------LGSGRVQTACWSPCGSFLLFACSGSP---RLYSLTFDG  312 (445)
T ss_pred             ccceeeeehhcccceeccee------ccCCceeeeeecCCCCEEEEEEcCCc---eEEEEeecC
Confidence            9999999954 333333333      12348999999999996554443332   377666543

>KOG2321|consensus

Probab=99.36  E-value=7.6e-10  Score=102.25  Aligned_cols=191  Identities=14%  Similarity=0.221  Sum_probs=132.7

Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      ..+++. +....|+-+++..|+.+..+....+.++++..+  ..+|+.|+.+|.+.+||..........           
T Consensus       146 cDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l-----------  213 (703)
T KOG2321|consen  146 CDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL-----------  213 (703)
T ss_pred             ccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee-----------
Confidence            344444 444568889999999999888888888888887  456666677777777776644332211           


Q ss_pred             EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-  507 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-  507 (635)
                                 ++.+.-...........|+++.|++  -.+++|..+|.+.|||+++.+++..-..  ....+|..+.| 
T Consensus       214 -----------~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~  280 (703)
T KOG2321|consen  214 -----------DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQ  280 (703)
T ss_pred             -----------ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeeccc
Confidence                       1111100000111223589999964  4899999999999999999887665432  24567888888 


Q ss_pred             --c-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        508 --N-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       508 --~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                        + ++.+++. ....++|||-.+|+....+..            ...++.+|+-|++.++++|-+++.+..|=+..
T Consensus       281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp------------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEP------------TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ccCCCceEEec-chHHhhhcccccCCceeeccc------------cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence              2 3556555 456799999999987665543            55689999999999999999998887776554

>KOG2041|consensus

Probab=99.36  E-value=4.3e-09  Score=100.04  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEE-EeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEE
Q psy18018         84 ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRV-WHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG  158 (635)
Q Consensus        84 i~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~v-wd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~  158 (635)
                      ..|++|+  ..++|.||.||.++|-.+.+...       |+..+= =...+-..-+++.||.+.|.-+.|  ..+.|-|.
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-------d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTT-------DLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCC-------cccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            3899999  88999999999999998875421       111100 000111223578899999999999  56789999


Q ss_pred             eCCCeEEEEeCCCccceeecccc---ceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018        159 AYDYMVKIWNPDTEECLHAELQE---TEVELSHGYALRSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       159 ~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  210 (635)
                      ..+|.|.+|-+-.+.........   ..+.......++.++.....||.|.+=.+
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            99999999998887655433222   22333333445666666666666655443

>KOG4547|consensus

Probab=99.33  E-value=1.4e-10  Score=107.63  Aligned_cols=204  Identities=15%  Similarity=0.224  Sum_probs=149.4

Q ss_pred             ecCcEEEEecCCCeEEEEEccCCceEEeeeCC---CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018        351 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH---QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV  427 (635)
Q Consensus       351 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  427 (635)
                      |...++|..+.||.+++|+...++....+...   .+...+..|.   |.....-  .+ |     .........+.+-.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~--~k-~-----~~~~~~~~~s~~t~   71 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSP--MK-W-----LSLEKAKKASLDTS   71 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccch--HH-H-----HhHHHHhhccCCce
Confidence            34578899999999999999988887766542   2233333333   1111000  00 0     00001111344666


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeec--cCCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEE
Q psy18018        428 HVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       428 ~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  503 (635)
                      .++.|...|.|.+|+...++....+.  .|.+.|.++....+  .+.+++.|+.+..|+..+.+.++....   ....+.
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~  148 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVS  148 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccc
Confidence            78999999999999999999988887  48999999987654  899999999999999999999998887   555566


Q ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-----CeEEEE-ecCCCeEE
Q psy18018        504 CLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-----SRFVIT-SSDDGTVK  575 (635)
Q Consensus       504 ~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~-~~~d~~v~  575 (635)
                      ++++  |+..+++++  +.|++||+++++.+..+.+           |.++|.+++|--+     |.++++ +..+.-+.
T Consensus       149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-----------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~  215 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-----------HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT  215 (541)
T ss_pred             eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-----------CCcceEEEEEEEeccccccceeeecccccccee
Confidence            6666  788999887  6899999999999988887           6889999998877     666555 44556677


Q ss_pred             EEeCCC
Q psy18018        576 LWDVKT  581 (635)
Q Consensus       576 iwd~~~  581 (635)
                      +|-+..
T Consensus       216 ~w~v~~  221 (541)
T KOG4547|consen  216 VWVVEK  221 (541)
T ss_pred             EEEEEc
Confidence            886544

>KOG2139|consensus

Probab=99.32  E-value=3e-09  Score=92.61  Aligned_cols=191  Identities=17%  Similarity=0.279  Sum_probs=124.2

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVW  106 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vW  106 (635)
                      +-+|++    +-=-.+|++.        .+.++.+||-.. +....|+.-..+-|+|++|-   ++-|+.|...| |++|
T Consensus       102 r~~aWh----qH~~~fava~--------nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW  167 (445)
T KOG2139|consen  102 RGVAWH----QHIIAFAVAT--------NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIW  167 (445)
T ss_pred             eeEeec----hhhhhhhhhc--------cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEE
Confidence            677888    4222333333        356666799777 77777887766667999998   77788777665 8999


Q ss_pred             ECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC-CCeEEEEeCCCccceeec-cccc
Q psy18018        107 SATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY-DYMVKIWNPDTEECLHAE-LQET  182 (635)
Q Consensus       107 d~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~-dg~v~iwd~~~~~~~~~~-~~~~  182 (635)
                      .....-..      ...++.-... .-.+..-.+| .+|+++.|  ||..+++++. |..|+|||.+++..+.-. ....
T Consensus       168 ~~s~tln~------~r~~~~~s~~-~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  168 SDSRTLNA------NRNIRMMSTH-HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             EcCccccc------cccccccccc-chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence            87532111      1111100000 0112223356 79999999  8999999985 678999999999876554 4445


Q ss_pred             eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEE-EEeeCc
Q psy18018        183 EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNII-ISGSTD  242 (635)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~d  242 (635)
                      ........++++.+++++-|+..++|+.....-......-.+.|....|+  |.+| ++.+..
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence            56677778889999999999999999644322222222344588888885  5544 444433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.3e-09  Score=107.09  Aligned_cols=214  Identities=12%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeC---CCcEE
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSL---DTSIR  439 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~  439 (635)
                      ..|.++|... .....+..|...+....|+                               |||+.|+..+.   +..|+
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wS-------------------------------pDG~~lay~s~~~g~~~i~  229 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFS-------------------------------PNRQEITYMSYANGRPRVY  229 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEEC-------------------------------CCCCEEEEEEecCCCCEEE
Confidence            3688888753 3344555566666666654                               55555555432   35788


Q ss_pred             EEeCCCCceeeeeccCCccEEEEEe--cCCEE-EEEeCCCc--EEEEECCCCceeEEecCCCcccccEEEEEe--cCCEE
Q psy18018        440 VWEAESGNLRHTLMGHQSLTSGMEL--RNNIL-VSGNADST--VKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV  512 (635)
Q Consensus       440 ~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  512 (635)
                      +||+.+++.. .+..+.+.+.+..|  +++.+ ++.+.++.  |++||+.+++.. .+..   +........|  ||+.+
T Consensus       230 ~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~---~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        230 LLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD---SPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             EEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccC---CCCccCceeEcCCCCEE
Confidence            8888777553 33444444444444  66655 45565655  777798877653 3443   3333444555  78888


Q ss_pred             EEEeC-CC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC---CeEEEEeCCCCceEE
Q psy18018        513 ITSSD-DG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD---GTVKLWDVKTGEFIR  586 (635)
Q Consensus       513 ~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~v~iwd~~~~~~~~  586 (635)
                      +..+. +|  .|+++|+..++... +..           ....+....|||||++|+....+   ..|.+||+.++.. .
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~~~~-lt~-----------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~  371 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSNPRR-ISF-----------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-R  371 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCCeEE-eec-----------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-E
Confidence            87764 33  68888887655322 211           13345667899999999876543   3688899866543 3


Q ss_pred             eeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee--EeEEEEEeeec
Q psy18018        587 NLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE--ETKLLVLDFDV  632 (635)
Q Consensus       587 ~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~--~~~l~~~d~~~  632 (635)
                      .+.    .  ...+....|+|||++|+..+.++.-  ...||.+|++.
T Consensus       372 ~lt----~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        372 ILT----S--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             ecc----C--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            332    1  1246788999999988876654321  13688888754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.30  E-value=2.7e-10  Score=96.99  Aligned_cols=130  Identities=15%  Similarity=0.211  Sum_probs=89.6

Q ss_pred             cEEEEECCC-CceeEEecCCCcccccEEEEEe--cCCEEEE--EeCCCcEEEEECCCCceeeeeccceecCceeEEeccC
Q psy18018        477 TVKVWDIVS-GQCLQTLSGRNKHQSAVTCLQF--NSRFVIT--SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ  551 (635)
Q Consensus       477 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (635)
                      ...+|.++. ......+...  ..++|.+++|  +++.+++  |..++.|.+||++ ++.+..+.             ..
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~--~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-------------~~  101 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELK--KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-------------TQ  101 (194)
T ss_pred             eEEEEEEecCCCccceeecc--CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-------------CC
Confidence            344555422 2334444321  3456999999  4666544  4467799999997 44443332             45


Q ss_pred             ceecccccCCCeEEEEecCC---CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee----EeE
Q psy18018        552 PLLCPHLQFNSRFVITSSDD---GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE----ETK  624 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~----~~~  624 (635)
                      .++.+.|||+|++|++++.+   |.+.+||+++.+.+....      |. .++.++|||||++|+++......    .++
T Consensus       102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~  174 (194)
T PF08662_consen  102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFK  174 (194)
T ss_pred             CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc------cC-cEEEEEEcCCCCEEEEEEeccceeccccEE
Confidence            67889999999999998754   679999999988887762      33 47899999999999999864221    256


Q ss_pred             EEEEe
Q psy18018        625 LLVLD  629 (635)
Q Consensus       625 l~~~d  629 (635)
                      ||.+.
T Consensus       175 Iw~~~  179 (194)
T PF08662_consen  175 IWSFQ  179 (194)
T ss_pred             EEEec
Confidence            77664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.4e-09  Score=106.02  Aligned_cols=203  Identities=17%  Similarity=0.163  Sum_probs=127.0

Q ss_pred             cEEEEEccCCcc--------eeEEEEEeeCCcEEEEEeC---CCcEEEEeCCCCceee--eeccCCccEEEEEecCCEEE
Q psy18018        404 TVKVWDIVSGTK--------KLMFRICLFDGVHVVSGSL---DTSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILV  470 (635)
Q Consensus       404 ~i~iwd~~~~~~--------~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~  470 (635)
                      .|.++|......        ......++|||+.|+..+.   +..+.+|++.+++...  .+.++... ..++++++.|+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEE
Confidence            577777655432        2234568999999887643   3579999998875433  23333322 34555777666


Q ss_pred             EE-eCCC--cEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCC-Cc--EEEEECCCCceeeeeccceecC
Q psy18018        471 SG-NADS--TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDD-GT--VKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       471 s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-~~--i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                      .. +.+|  .|++||+.+++......    +...+....|  ||+.|+..+.+ +.  |+++|+.+++.. .+..     
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-----  328 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-----  328 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEccC----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----
Confidence            54 4455  48899998876544332    2234455666  78888777654 44  555566665432 2111     


Q ss_pred             ceeEEeccCceecccccCCCeEEEEecCC---CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        543 PFYFLIYSQPLLCPHLQFNSRFVITSSDD---GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                            ........+|||||++|+..+.+   ..|.+||+.+++.. .+..    .  .......|+|||++|+.++.++
T Consensus       329 ------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~----~--~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        329 ------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD----T--FLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             ------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC----C--CCCCCceECCCCCEEEEEEcCC
Confidence                  12334568899999999876543   35889999888743 3421    1  1234678999999999999887


Q ss_pred             eeEeEEEEEeee
Q psy18018        620 TEETKLLVLDFD  631 (635)
Q Consensus       620 ~~~~~l~~~d~~  631 (635)
                      .. -.++.++.+
T Consensus       396 ~~-~~l~~~~~~  406 (429)
T PRK03629        396 MG-SVLNLVSTD  406 (429)
T ss_pred             Cc-eEEEEEECC
Confidence            52 356666654

>KOG2315|consensus

Probab=99.29  E-value=2.3e-08  Score=92.59  Aligned_cols=242  Identities=12%  Similarity=0.133  Sum_probs=147.7

Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEE--------EEEeeC--CcEEEE
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMF--------RICLFD--GVHVVS  431 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~--~~~l~~  431 (635)
                      -.+.+|+..++.....+......-.+..|+ .+.++.--..+.+.+|++.+.+.....        -.++|.  ..++++
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv  184 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV  184 (566)
T ss_pred             CceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence            357888888755544444333332466665 344555455667888887764322111        113333  223333


Q ss_pred             -----EeCCCcEEEEeCCCCceeeeecc---CCccEEEEEec--CC-EEE--EEeCC---------CcEEEEECCCCcee
Q psy18018        432 -----GSLDTSIRVWEAESGNLRHTLMG---HQSLTSGMELR--NN-ILV--SGNAD---------STVKVWDIVSGQCL  489 (635)
Q Consensus       432 -----~~~d~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~--~~-~l~--s~~~d---------g~i~iwd~~~~~~~  489 (635)
                           .+.-..+++|..........+..   ....-..+.|+  +. +|+  +..-|         .+++++++....+.
T Consensus       185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~  264 (566)
T KOG2315|consen  185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS  264 (566)
T ss_pred             EccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence                 24456788887663222111111   11222345564  22 333  33333         35888888744555


Q ss_pred             EEecCCCcccccEEEEEec--CCEE--EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        490 QTLSGRNKHQSAVTCLQFN--SRFV--ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~--~~~l--~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      -.+.    ..++|.++.|+  ++-+  +.|..-..+.+||++ +..+..+.             .++-+++-|+|.|+++
T Consensus       265 V~L~----k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-------------egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  265 VPLL----KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-------------EGPRNTAFFNPHGNII  326 (566)
T ss_pred             EecC----CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-------------CCCccceEECCCCCEE
Confidence            5554    57899999994  5444  445566789999987 33333332             4567888999999999


Q ss_pred             EEecCC---CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee----EeEEEEEe
Q psy18018        566 ITSSDD---GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE----ETKLLVLD  629 (635)
Q Consensus       566 ~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~----~~~l~~~d  629 (635)
                      +.+|-+   |.+.|||+.+.+++..+.     .  ..-+-..|+|||+++++++..-..    .++||-|.
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~-----a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFK-----A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccc-----c--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            998865   789999999999888883     2  234567899999999999887432    36777765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=4e-09  Score=102.90  Aligned_cols=220  Identities=18%  Similarity=0.153  Sum_probs=139.2

Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe---CCCcEEEEEccCCcceeE--------EEEEeeCCcEE
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN---ADSTVKVWDIVSGTKKLM--------FRICLFDGVHV  429 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~---~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~l  429 (635)
                      ..|.++|.+.... ..+..+...+...+|+  ++.|+..+   .+..+.+|++.+++....        ...++|||+.|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            4789999875544 3344566678888887  55666543   345789999987754332        23589999988


Q ss_pred             EEE-eCCC--cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCC-Cc--EEEEECCCCceeEEecCCCccccc
Q psy18018        430 VSG-SLDT--SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNAD-ST--VKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       430 ~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      +.. +.++  .|++||+.+++..+... +...+....|  +++.++..+.+ +.  |+++|+.+++.. .+..   ....
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~  332 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQ  332 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCC
Confidence            875 3344  58999998877654433 3334444555  66777666554 44  455577665543 3332   1222


Q ss_pred             EEE--EEecCCEEEEEeCC---CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe---
Q psy18018        502 VTC--LQFNSRFVITSSDD---GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT---  573 (635)
Q Consensus       502 v~~--~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---  573 (635)
                      ...  +..||++++..+.+   ..|.+||+.+++... +..            ........|+|||++|+.++.++.   
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~------------~~~~~~p~~SpDG~~i~~~s~~~~~~~  399 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD------------TFLDETPSIAPNGTMVIYSSSQGMGSV  399 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC------------CCCCCCceECCCCCEEEEEEcCCCceE
Confidence            223  44478888776543   358889998876332 211            112235789999999999887764   


Q ss_pred             EEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        574 VKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       574 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      +.++++ +|+....+     ..+.+.+...+|+|
T Consensus       400 l~~~~~-~G~~~~~l-----~~~~~~~~~p~Wsp  427 (429)
T PRK03629        400 LNLVST-DGRFKARL-----PATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEEC-CCCCeEEC-----ccCCCCcCCcccCC
Confidence            677787 45555666     35666788888887

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.8e-09  Score=106.00  Aligned_cols=184  Identities=16%  Similarity=0.168  Sum_probs=110.7

Q ss_pred             eCCcEEEEEeC---CCcEEEEeCCCCceeeeeccCCccEEE--EEecCCEEE-EEeCCC--cEEEEECCCCceeEEecCC
Q psy18018        424 FDGVHVVSGSL---DTSIRVWEAESGNLRHTLMGHQSLTSG--MELRNNILV-SGNADS--TVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       424 ~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~  495 (635)
                      |||+.|+..+.   +..|++||+.+++... +....+...+  ++++++.++ +.+.+|  .|++||+.+++.. .+.. 
T Consensus       213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-  289 (433)
T PRK04922        213 PDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-  289 (433)
T ss_pred             CCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-
Confidence            55555555542   2357788887665432 2222332333  444676554 555555  5999999887643 3433 


Q ss_pred             CcccccEEEEEe--cCCEEEEEeC-CCc--EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        496 NKHQSAVTCLQF--NSRFVITSSD-DGT--VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       496 ~~~~~~v~~~~~--~~~~l~~~~~-d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                        +.......+|  ||+.++..+. +|.  |+++++.+++... +..           ........+|||||++|+..+.
T Consensus       290 --~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-----------~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        290 --HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-----------QGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             --CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-----------CCCCccCEEECCCCCEEEEEEC
Confidence              3333344555  7888877664 444  6777777665322 111           1223346799999999987654


Q ss_pred             CC---eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        571 DG---TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       571 d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ++   .|.+||+.+++.. .+.      +........|+|||++|+..+.++- ..+||.+|.+.
T Consensus       356 ~~~~~~I~v~d~~~g~~~-~Lt------~~~~~~~p~~spdG~~i~~~s~~~g-~~~L~~~~~~g  412 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR-TLT------PGSLDESPSFAPNGSMVLYATREGG-RGVLAAVSTDG  412 (433)
T ss_pred             CCCceeEEEEECCCCCeE-ECC------CCCCCCCceECCCCCEEEEEEecCC-ceEEEEEECCC
Confidence            33   6999999888754 342      1123446789999998887776532 25688887754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.26  E-value=6e-10  Score=94.87  Aligned_cols=114  Identities=15%  Similarity=0.381  Sum_probs=84.9

Q ss_pred             CCccEEEEEecC--CEEE--EEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeC---CCcEEEEE
Q psy18018        455 HQSLTSGMELRN--NILV--SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSD---DGTVKLWD  525 (635)
Q Consensus       455 ~~~~v~~~~~~~--~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---d~~i~vwd  525 (635)
                      ..++|.+++|++  +.++  .|..++.|.+||++ ++.+..+.     ...+..+.|  +|+++++++.   .|.|.+||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            345799999864  4543  34467899999997 66666664     345566777  6999999874   36799999


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC------CCeEEEEeCCCCceEEee
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD------DGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~  588 (635)
                      +++.+.+....             ...++.++|||||++++++..      |+.++||+.. |+++...
T Consensus       132 ~~~~~~i~~~~-------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  132 VRKKKKISTFE-------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CCCCEEeeccc-------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            99777665543             234788999999999999874      7889999985 7766554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.26  E-value=3.8e-08  Score=90.03  Aligned_cols=142  Identities=16%  Similarity=0.210  Sum_probs=99.7

Q ss_pred             cceeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcce
Q psy18018          4 RSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV   83 (635)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~v   83 (635)
                      ..|..+|..+...+...+..-.-++ ..+.+|    |.|+||++....+         +.+|+.+.+..+..+. |. .|
T Consensus        11 ~~i~~f~~~~s~~~~~~~~~~~~p~-~~~~~S----P~G~~l~~~~~~~---------V~~~~g~~~~~l~~~~-~~-~V   74 (561)
T COG5354          11 AVISVFWNSQSEVIHTRFESENWPV-AYVSES----PLGTYLFSEHAAG---------VECWGGPSKAKLVRFR-HP-DV   74 (561)
T ss_pred             ceEEEeecCccccccccccccCcch-hheeec----Ccchheehhhccc---------eEEccccchhheeeee-cC-Cc
Confidence            4678899988888777777778888 899999    9999999987543         3349988887555554 33 35


Q ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcc--eE-EEEe--cCCEEE
Q psy18018         84 ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAA--VR-CVQY--DGKLVV  156 (635)
Q Consensus        84 i~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~--v~-~l~~--~~~~l~  156 (635)
                       .-+.||  ++||.|-+....+   +.+..   ..--..++.+.+||..++..+..+.+-..+  .. -+.|  +++++|
T Consensus        75 -~~~~fSP~~kYL~tw~~~pi~---~pe~e---~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A  147 (561)
T COG5354          75 -KYLDFSPNEKYLVTWSREPII---EPEIE---ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA  147 (561)
T ss_pred             -eecccCcccceeeeeccCCcc---Chhhc---cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence             889999  9999998876643   21100   011122346889999999999888876665  33 4555  666655


Q ss_pred             EEeCCCeEEEEeC
Q psy18018        157 SGAYDYMVKIWNP  169 (635)
Q Consensus       157 s~~~dg~v~iwd~  169 (635)
                      -. ....+.|+++
T Consensus       148 Rv-v~~sl~i~e~  159 (561)
T COG5354         148 RV-VGSSLYIHEI  159 (561)
T ss_pred             hh-ccCeEEEEec
Confidence            54 4456888886

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.25  E-value=1.4e-06  Score=91.95  Aligned_cols=395  Identities=14%  Similarity=0.134  Sum_probs=215.3

Q ss_pred             CCcceEEEEe--cCCEEEEEeCCCeEEEE----eCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCe
Q psy18018        141 HLAAVRCVQY--DGKLVVSGAYDYMVKIW----NPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGK  214 (635)
Q Consensus       141 h~~~v~~l~~--~~~~l~s~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  214 (635)
                      ..+.|.++.+  +...++.+..+|.|.+.    +..+.+.-..-....++......|++..|+..+.++++.+.+- +.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd  152 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFD  152 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cce
Confidence            4567888888  88889999999999999    5555443333344456777777788899999999998887652 222


Q ss_pred             EE------------------------EEEeC------------------------CCCCeEEEEe--eCCEEEEeeC---
Q psy18018        215 CL------------------------RTLIG------------------------HTGGVWSSQM--AGNIIISGST---  241 (635)
Q Consensus       215 ~~------------------------~~~~~------------------------h~~~v~~~~~--~~~~l~s~~~---  241 (635)
                      ++                        ..|.|                        +...-..++|  ||.++++.+.   
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence            22                        11211                        1112234555  4666666553   


Q ss_pred             ---ceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEe
Q psy18018        242 ---DRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFL  318 (635)
Q Consensus       242 ---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (635)
                         -..+|+|+-+.......                                                            
T Consensus       233 ~~~~R~iRVy~ReG~L~stS------------------------------------------------------------  252 (928)
T PF04762_consen  233 TGSRRVIRVYSREGELQSTS------------------------------------------------------------  252 (928)
T ss_pred             CCceeEEEEECCCceEEecc------------------------------------------------------------
Confidence               25677776543211110                                                            


Q ss_pred             ecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC---CCeEEEEEccCCceEEeee----CCCcceeEEEE
Q psy18018        319 AEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL---DTSIRVWEAESGNLRHTLM----GHQSLTSGMEL  391 (635)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~----~~~~~v~~l~~  391 (635)
                                         .........++|.|.|+++|+...   ...|.+|.- +|-....|.    .....|..+.|
T Consensus       253 -------------------E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W  312 (928)
T PF04762_consen  253 -------------------EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW  312 (928)
T ss_pred             -------------------ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE
Confidence                               112223445679999999888765   345667763 354443332    34568999999


Q ss_pred             e--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE--EEEe---
Q psy18018        392 R--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS--GMEL---  464 (635)
Q Consensus       392 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~--~~~~---  464 (635)
                      +  ++.|+....|. |.+|-..+-+.-.......+....+       ....|+.+....+..+.. .+.+.  .+.|   
T Consensus       313 n~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~-------~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~  383 (928)
T PF04762_consen  313 NSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV-------NFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVS  383 (928)
T ss_pred             CCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC-------CceEECCCCCCEEEEEec-CCcEEEEEEEEEEE
Confidence            7  66777766555 9999887766444443322221111       113344443333222221 01111  1111   


Q ss_pred             -------cCCEEEEEeCCCcEEEEECCCCceeEEecC-CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceee-
Q psy18018        465 -------RNNILVSGNADSTVKVWDIVSGQCLQTLSG-RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFST-  533 (635)
Q Consensus       465 -------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~-  533 (635)
                             ++.-.+..=+..++.+-.++.......+.. .-....+|.+++|  ++..+++-..||.|.+|......... 
T Consensus       384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~  463 (928)
T PF04762_consen  384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSV  463 (928)
T ss_pred             ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccc
Confidence                   011122222223455555554322111111 0014567889999  45558999999999999865543221 


Q ss_pred             ---eeccceecC---ceeEEeccCceecccccCCCeEEEEecCC---CeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018        534 ---PLMSSFILN---PFYFLIYSQPLLCPHLQFNSRFVITSSDD---GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       534 ---~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                         .+.......   ..........+..++|..+..+++....+   ..+.++++...+........  ....+.+..+.
T Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  541 (928)
T PF04762_consen  464 KPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS--TEVDGVVLIIS  541 (928)
T ss_pred             cCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE--eccCceEEEEe
Confidence               000000000   00011123456778888888777776654   67888888544322222111  23455666666


Q ss_pred             eCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        605 ASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       605 ~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ..++...++.-..+|.    ++.++.+
T Consensus       542 ~~~~~~~~~~q~~~G~----v~~~~~~  564 (928)
T PF04762_consen  542 SSPDSGSLYIQTNDGK----VFQLSSD  564 (928)
T ss_pred             eCCCCcEEEEEECCCE----EEEeecC
Confidence            6676665666777887    5554443

>KOG0280|consensus

Probab=99.24  E-value=1.9e-09  Score=91.22  Aligned_cols=243  Identities=14%  Similarity=0.125  Sum_probs=156.2

Q ss_pred             CCeEEEEEccCCceEE--e-eeCCCcceeEEEEe-----CC-EEEEEeCCCcEEEEEccCCcceeE--------------
Q psy18018        362 DTSIRVWEAESGNLRH--T-LMGHQSLTSGMELR-----NN-ILVSGNADSTVKVWDIVSGTKKLM--------------  418 (635)
Q Consensus       362 dg~i~v~~~~~~~~~~--~-~~~~~~~v~~l~~~-----~~-~l~s~~~dg~i~iwd~~~~~~~~~--------------  418 (635)
                      .|.+.+|++...+...  + .....+.+..+.|.     ++ .++-+..+|.|.++..........              
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678888877554332  1 11223445555553     34 567777888898887654322111              


Q ss_pred             -EEEEeeCCcEEEEEeCCCcEEEEeCCCCcee--eeeccCCccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        419 -FRICLFDGVHVVSGSLDTSIRVWEAESGNLR--HTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       419 -~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                       ..-+++.+..++++..+|.+.+-+.....+.  +.+++|+-......|   +++++.+|++|+.+..||++..+ ...+
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~  203 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIW  203 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceee
Confidence             1125667788999999999997666655544  478889887776666   57899999999999999998332 2233


Q ss_pred             cCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCC--CeEEE
Q psy18018        493 SGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN--SRFVI  566 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~  566 (635)
                      .....|...|.++.-+   +.++++|+.|-.|++||.++ ++.+..-            ...+.|..+..+|.  +++|+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~------------~v~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA------------KVGGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC------------ccccceEEEEecchhhhHHHH
Confidence            3333488888888874   66999999999999999984 3322221            12467777777774  45666


Q ss_pred             EecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018        567 TSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       567 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                      ++-.+| .+|-+.+.+..-..........|.+-...-.|......||+++.-
T Consensus       272 ~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY  322 (339)
T KOG0280|consen  272 ACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY  322 (339)
T ss_pred             HHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence            666666 777777664332111111113555656666664445678886643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=5.2e-09  Score=102.31  Aligned_cols=184  Identities=15%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             eeCCcEEEEEeCC---CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEE-EEeCCCcEEEEE--CCCCceeEEecC
Q psy18018        423 LFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILV-SGNADSTVKVWD--IVSGQCLQTLSG  494 (635)
Q Consensus       423 ~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~  494 (635)
                      +|||+.|+..+.+   ..|.+||+.+++... +....+...+..|  +++.++ +.+.+|...||.  +..+. ...+..
T Consensus       204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~  281 (427)
T PRK02889        204 SPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ  281 (427)
T ss_pred             cCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC
Confidence            4566666655432   358888888776533 2222233334444  666665 567788766665  44443 444443


Q ss_pred             CCcccccEEEEEe--cCCEEEEEeC-CCcEEEEEC--CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        495 RNKHQSAVTCLQF--NSRFVITSSD-DGTVKLWDV--KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       495 ~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                         +........|  ||+.++..+. +|...+|.+  .+++... +..           ........+|||||++|+..+
T Consensus       282 ---~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~-----------~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        282 ---SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF-----------TGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             ---CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec-----------CCCCcCceEECCCCCEEEEEE
Confidence               2333334455  7888776654 456666654  4443211 111           112234568999999998776


Q ss_pred             CCC---eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        570 DDG---TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       570 ~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      .++   .|.+||+.+++.. .+.    ..  .......|+|||++|+.++.++. ...++.++.+
T Consensus       347 ~~~g~~~I~v~d~~~g~~~-~lt----~~--~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~~  403 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVT-ALT----DT--TRDESPSFAPNGRYILYATQQGG-RSVLAAVSSD  403 (427)
T ss_pred             ccCCcEEEEEEECCCCCeE-Ecc----CC--CCccCceECCCCCEEEEEEecCC-CEEEEEEECC
Confidence            554   6999999988754 332    11  22357799999998888876664 2457777664

>KOG1354|consensus

Probab=99.21  E-value=2.9e-09  Score=92.05  Aligned_cols=279  Identities=15%  Similarity=0.204  Sum_probs=162.2

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCCc-----eEEeeeCCC------------cceeEEEEe----CCEEEEE
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-----LRHTLMGHQ------------SLTSGMELR----NNILVSG  399 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~~~~------------~~v~~l~~~----~~~l~s~  399 (635)
                      ......+.|...|.+|++|+.+|.|.+|.-....     ....++.|.            ..|..+.|-    ...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3455667788899999999999999999754322     223444453            356667774    3478888


Q ss_pred             eCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC------ceeeee-ccCCccEEEEEecCC--EEE
Q psy18018        400 NADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG------NLRHTL-MGHQSLTSGMELRNN--ILV  470 (635)
Q Consensus       400 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~-~~~~~~v~~~~~~~~--~l~  470 (635)
                      +.|.++++|.+........-......+    ..+.-..+++--+...      .+.+.+ .+|.-.+++++++.+  .++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~----~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEG----PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccC----CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            899999999886543332000000000    0000011111111111      112222 357788999998543  555


Q ss_pred             EEeCCCcEEEEECCCCceeE---EecCC--CcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeecc--cee
Q psy18018        471 SGNADSTVKVWDIVSGQCLQ---TLSGR--NKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMS--SFI  540 (635)
Q Consensus       471 s~~~dg~i~iwd~~~~~~~~---~~~~~--~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~  540 (635)
                      + .+|-.|.+|++.-...-.   .++..  ..-...|++..|+   .+.++..+..|+|++-|++...+-..-..  ..+
T Consensus       181 S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            4 467889999986432211   12210  0123456777773   67888888999999999995432111100  001


Q ss_pred             cCcee---EEeccCceecccccCCCeEEEEecCCCeEEEEeC-CCCceEEeeeeccC-------CCCCce---EEEEEeC
Q psy18018        541 LNPFY---FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGEFIRNLVSLDS-------GGSGGV---VWRIRAS  606 (635)
Q Consensus       541 ~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~-~~~~~~~~~~~~~~-------~~~~~~---i~~l~~s  606 (635)
                      ..|..   +..--..|..+.|+++|+|+++-+. -+|++||+ ...+.+.++..++.       --....   -..++|+
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence            11111   1111236778899999999997654 57999999 45555555543321       011222   3578999


Q ss_pred             CCCeEEEEccCCCeeEeEEEE
Q psy18018        607 ETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      .++.++++|+-+..  +++|.
T Consensus       339 g~~~~v~TGsy~n~--frvf~  357 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNV--FRVFN  357 (433)
T ss_pred             CCcceEecccccce--EEEec
Confidence            99999999999887  44443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.21  E-value=5.4e-08  Score=87.82  Aligned_cols=212  Identities=18%  Similarity=0.195  Sum_probs=146.7

Q ss_pred             CCeEEEEEccCCceEEeeeCC---CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE-------EeeCCcEEEE
Q psy18018        362 DTSIRVWEAESGNLRHTLMGH---QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI-------CLFDGVHVVS  431 (635)
Q Consensus       362 dg~i~v~~~~~~~~~~~~~~~---~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~l~~  431 (635)
                      +|.|..||..+|+.+......   ...+......++.+++++.++.+..||..+++.......       ...++..+++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v   81 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV   81 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence            688999999999998877542   222222233688888889999999999999987666654       2336677788


Q ss_pred             EeCCCcEEEEeCCCCceeeee-ccCC-----ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCccc-cc---
Q psy18018        432 GSLDTSIRVWEAESGNLRHTL-MGHQ-----SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ-SA---  501 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~-~~~~-----~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~---  501 (635)
                      +..++.++.+|..+|+.+... ....     .......+.++.++.+..++.|..+|+++|+.+.......... ..   
T Consensus        82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS  161 (238)
T ss_dssp             EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred             ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence            888899999999999998884 3321     1223445568899999999999999999999988876622111 11   


Q ss_pred             ----EEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        502 ----VTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       502 ----v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                          ...+.+++..++.++.++.+.-+|+++++.......             ..+.. ...+++..|++++.++.+..|
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~~-------------~~~~~-~~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKPI-------------SGIYS-LPSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEECS-------------S-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred             ecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEecC-------------CCccC-CceeeCCEEEEEeCCCEEEEE
Confidence                123333444777777788644449999985432111             01111 134567777777799999999


Q ss_pred             eCCCCceEEe
Q psy18018        578 DVKTGEFIRN  587 (635)
Q Consensus       578 d~~~~~~~~~  587 (635)
                      |+++|+.+.+
T Consensus       228 d~~tG~~~W~  237 (238)
T PF13360_consen  228 DLKTGKVVWQ  237 (238)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCCEEeE
Confidence            9999998764

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.5e-08  Score=99.43  Aligned_cols=91  Identities=11%  Similarity=0.039  Sum_probs=55.5

Q ss_pred             cEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEEeeeccCCCEEE
Q psy18018        123 TLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIV  197 (635)
Q Consensus       123 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (635)
                      .|.+||.... ..+.+..|...+.+.+|  ||+.|+..+.+   ..|.+||+.+++.................++++.++
T Consensus       185 ~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        185 ALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            5899998644 44556677788989898  89999988743   469999998876533221121122223334455554


Q ss_pred             -EEeCCC--cEEEEECCCCe
Q psy18018        198 -SGSDDN--TLKVWSATTGK  214 (635)
Q Consensus       198 -~~~~dg--~i~vwd~~~~~  214 (635)
                       +.+.+|  .|++||+.+++
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             EEEeCCCCceEEEEECCCCC
Confidence             334443  46666665544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1.9e-08  Score=98.44  Aligned_cols=87  Identities=9%  Similarity=0.080  Sum_probs=52.8

Q ss_pred             CcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEEeeeccCCCEE
Q psy18018        122 ATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVELSHGYALRSRI  196 (635)
Q Consensus       122 g~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (635)
                      ..|.++|.. ++..+.+..+...+.+.+|  ||+.|+..+.+   ..|.+||+.+++.................++++.|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            357777874 4444555677888999999  89999887643   45999999988654322122222233344455555


Q ss_pred             E-EEeCCCcEEEEE
Q psy18018        197 V-SGSDDNTLKVWS  209 (635)
Q Consensus       197 ~-~~~~dg~i~vwd  209 (635)
                      + +.+.+|...+|.
T Consensus       255 a~~~~~~g~~~Iy~  268 (427)
T PRK02889        255 AVALSRDGNSQIYT  268 (427)
T ss_pred             EEEEccCCCceEEE
Confidence            4 345555544443

>KOG2315|consensus

Probab=99.17  E-value=1.3e-07  Score=87.80  Aligned_cols=352  Identities=10%  Similarity=0.152  Sum_probs=198.6

Q ss_pred             eeeeecCCCCCCcccccc---ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcce
Q psy18018          7 EINWRTRPIKDPKVLKGH---DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV   83 (635)
Q Consensus         7 ~~~~~~~~~~~~~~l~gh---~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~v   83 (635)
                      .+.|+-.+........++   ..+. ...++|    ++|+++|.+..         ..+.|.+..+...+-+...-  .+
T Consensus        13 ~~l~~~~~~~~~~~~f~~~~~~~~~-~v~~~S----~~G~lfA~~~~---------~~v~i~~~~~~~~~lt~~~~--~~   76 (566)
T KOG2315|consen   13 FYLFNGPGSKDAVTVFEQNKTSRPC-NVFAYS----NNGRLFAYSDN---------QVVKVFEIATLKVVLCVELK--KT   76 (566)
T ss_pred             eEEeccCCccccccccccCCCCCcc-eeEEEc----CCCcEEEEEcC---------CeEEEEEccCCcEEEEeccc--ee
Confidence            567877765665555555   4555 678999    99999999874         34445777776533332222  45


Q ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeC
Q psy18018         84 ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAY  160 (635)
Q Consensus        84 i~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~  160 (635)
                       .++.||  |++|.|--   .-.+|+-.+..        ...+.+|+++++.....+......=++..| .+..|+.--.
T Consensus        77 -~~L~fSP~g~yL~T~e---~~~i~~~~~~~--------~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv  144 (566)
T KOG2315|consen   77 -YDLLFSPKGNYLLTWE---PWAIYGPKNAS--------NPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV  144 (566)
T ss_pred             -eeeeeccccccccccc---ccccccCCCCC--------CCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh
Confidence             799999  88887632   12233322221        345778888886555555433222257888 4555555555


Q ss_pred             CCeEEEEeCCCccceeeccccceeEEeeeccCC---CEEEE-----EeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee
Q psy18018        161 DYMVKIWNPDTEECLHAELQETEVELSHGYALR---SRIVS-----GSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA  232 (635)
Q Consensus       161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  232 (635)
                      .+.+.+|++.+.+......+...+... .++++   ..+++     .+.-+.+++|.......-..       +..=.| 
T Consensus       145 ~nev~f~~~~~f~~~~~kl~~~~i~~f-~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~-------~a~ksF-  215 (566)
T KOG2315|consen  145 SNEVQFYDLGSFKTIQHKLSVSGITML-SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP-------VANKSF-  215 (566)
T ss_pred             cceEEEEecCCccceeeeeeccceeeE-EecCCCCCceEEEEccCCCCCCcEEEEeccccccccch-------hhhccc-
Confidence            678999998875433322222222211 11111   12221     12223455554331110000       000000 


Q ss_pred             CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccc
Q psy18018        233 GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTC  312 (635)
Q Consensus       233 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (635)
                          +  -.|..-..|+-....+..                                       ++              
T Consensus       216 ----F--kadkvqm~WN~~gt~LLv---------------------------------------La--------------  236 (566)
T KOG2315|consen  216 ----F--KADKVQMKWNKLGTALLV---------------------------------------LA--------------  236 (566)
T ss_pred             ----c--ccceeEEEeccCCceEEE---------------------------------------EE--------------
Confidence                0  012333334322111000                                       00              


Q ss_pred             cceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe
Q psy18018        313 RSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  392 (635)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~  392 (635)
                                                       ...+...+   ++-..+..+++++++ |.....-....++|.++.|+
T Consensus       237 ---------------------------------stdVDktn---~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~  279 (566)
T KOG2315|consen  237 ---------------------------------STDVDKTN---ASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWS  279 (566)
T ss_pred             ---------------------------------EEeecCCC---ccccccceEEEEEec-CceEEEecCCCCCceEEEEC
Confidence                                             00000000   011124467777777 33333333347899999998


Q ss_pred             --CCEE--EEEeCCCcEEEEEccCC------cceeEEEEEeeCCcEEEEEeCC---CcEEEEeCCCCceeeeeccCCccE
Q psy18018        393 --NNIL--VSGNADSTVKVWDIVSG------TKKLMFRICLFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLT  459 (635)
Q Consensus       393 --~~~l--~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v  459 (635)
                        +..+  +-|-.-..+.++|++..      +.......++|.|++++.++-+   |.+-+||+.+.+++..+......+
T Consensus       280 ~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~  359 (566)
T KOG2315|consen  280 PSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV  359 (566)
T ss_pred             CCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence              3333  34456678888887643      3344455689999999988754   799999999999999999888888


Q ss_pred             EEEEecCCEEEEEeC------CCcEEEEECCCCceeEEe
Q psy18018        460 SGMELRNNILVSGNA------DSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~  492 (635)
                      ...+++|.+++++..      |+.++||+.. |..+...
T Consensus       360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~  397 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK  397 (566)
T ss_pred             EEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh
Confidence            888889999888874      6789999975 5555443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=3.2e-06  Score=77.13  Aligned_cols=187  Identities=13%  Similarity=0.164  Sum_probs=132.5

Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc---C---Cc--------cEEEEEe-cCCEEEEEeCCCcEEEEECCCC
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG---H---QS--------LTSGMEL-RNNILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~---~~--------~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~  486 (635)
                      ...||+.++.. ..|.|.+||..+.++...--+   .   ..        -...++. +|++++..+. |...+.+...+
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            45577777654 578899999887544321111   0   00        0111222 5778888775 56777776655


Q ss_pred             ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC-cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG-TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      -.++. .    +...|.-..+  +++-++.|..|| .+-|+|..+++.......            -+.|.++..+|||+
T Consensus       352 ~~iqv-~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~------------lg~I~av~vs~dGK  414 (668)
T COG4946         352 YSIQV-G----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD------------LGNIEAVKVSPDGK  414 (668)
T ss_pred             eeEEc-C----CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC------------ccceEEEEEcCCCc
Confidence            44332 2    4455655555  677899999999 899999998875544332            46788999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      +++.+.....+.+.|+.+|.... +.    ....+-|+..+|+|+++++|-+--+|.+.-.+-++|.+.
T Consensus       415 ~~vvaNdr~el~vididngnv~~-id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         415 KVVVANDRFELWVIDIDNGNVRL-ID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEEEcCceEEEEEEecCCCeeE-ec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            99999999999999999998543 32    355678999999999999999999998866666666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=9.4e-08  Score=94.09  Aligned_cols=91  Identities=11%  Similarity=0.033  Sum_probs=57.4

Q ss_pred             cEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC---CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEE
Q psy18018        123 TLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY---DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIV  197 (635)
Q Consensus       123 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (635)
                      .|.++|.+. .....+..|...+.+.+|  ||+.|+..+.   +..|.+||+.+++.................+++..|+
T Consensus       183 ~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            788999854 444566788889999999  8999888764   4689999998876533222222222233344555554


Q ss_pred             -EEeCCCc--EEEEECCCCe
Q psy18018        198 -SGSDDNT--LKVWSATTGK  214 (635)
Q Consensus       198 -~~~~dg~--i~vwd~~~~~  214 (635)
                       +.+.++.  |++||+.+++
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGT  281 (435)
T ss_pred             EEEecCCCceEEEEECCCCc
Confidence             3444443  5555665543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=3e-07  Score=87.27  Aligned_cols=248  Identities=14%  Similarity=0.190  Sum_probs=131.1

Q ss_pred             CCCceEEEEecCcEEEEecC----CCeEEEEEccCC--ce--EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCC
Q psy18018        342 HVPDLFGFQFDGVHVVSGSL----DTSIRVWEAESG--NL--RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG  413 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~----dg~i~v~~~~~~--~~--~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  413 (635)
                      ..+..++++|++++|.+...    ++.|..|++...  ++  +............++.+                     
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~---------------------   95 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD---------------------   95 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC---------------------
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe---------------------
Confidence            33445678899999988876    468888887653  22  22222112222334442                     


Q ss_pred             cceeEEEEEeeCCcEEEEEe-CCCcEEEEeCCC-Cceeee---e----------ccCCccEEEEEe--cCCEEEEEe-CC
Q psy18018        414 TKKLMFRICLFDGVHVVSGS-LDTSIRVWEAES-GNLRHT---L----------MGHQSLTSGMEL--RNNILVSGN-AD  475 (635)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~~---~----------~~~~~~v~~~~~--~~~~l~s~~-~d  475 (635)
                                +++++|+++. .+|.+.++++.. +.+...   +          ........++.+  +++++++.. ..
T Consensus        96 ----------~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   96 ----------PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             ----------TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             ----------cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence                      3444444433 244455555443 222111   1          001123344444  566666653 34


Q ss_pred             CcEEEEECCCCc--ee--EEecCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECC--CCceeeeeccceecCceeE
Q psy18018        476 STVKVWDIVSGQ--CL--QTLSGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVK--TGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       476 g~i~iwd~~~~~--~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~  546 (635)
                      ..|.+|++....  ..  ..+..  ........+.|  +++++++.. .++.|.++++.  ++.........  ..+. .
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~--~~~~-~  240 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS--TLPE-G  240 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE--SCET-T
T ss_pred             CEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee--eccc-c
Confidence            579999987654  22  22222  13344566777  677765554 57889999988  44322111110  0000 0


Q ss_pred             EeccCceecccccCCCeEEEEec-CCCeEEEEeCC--CCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEe
Q psy18018        547 LIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVK--TGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEET  623 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~  623 (635)
                      .........++++|||++|.++. .++.|.+|++.  +++ +..+....  ......+.++++|||++|+++..+.. .+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~~s~-~v  316 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQDSN-TV  316 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEE--ESSSSEEEEEE-TTSSEEEEEETTTT-EE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCC-eE
Confidence            00112567789999999888765 56789999993  343 33332221  12344789999999999998876653 14


Q ss_pred             EEEEEe
Q psy18018        624 KLLVLD  629 (635)
Q Consensus       624 ~l~~~d  629 (635)
                      .+|.+|
T Consensus       317 ~vf~~d  322 (345)
T PF10282_consen  317 SVFDID  322 (345)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.14  E-value=3.7e-08  Score=88.84  Aligned_cols=233  Identities=16%  Similarity=0.105  Sum_probs=139.3

Q ss_pred             CCCeEEEEeCCCccceeeccccc--eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEE
Q psy18018        160 YDYMVKIWNPDTEECLHAELQET--EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIII  237 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~  237 (635)
                      .+|+|..||..+|+.+.+.....  ..........++++++++.++.+..||..+|+.+................++.++
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~   80 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY   80 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence            36889999999998888765422  2222224446888999999999999999999999887652221122355788888


Q ss_pred             EeeCceeEEEecccceeeeccc-cccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccccee
Q psy18018        238 SGSTDRTLKGWSNAERILAIGQ-LIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWR  316 (635)
Q Consensus       238 s~~~dg~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (635)
                      .+..++.+..+|..++...... ...                                                      
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~------------------------------------------------------  106 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTS------------------------------------------------------  106 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-S------------------------------------------------------
T ss_pred             cccceeeeEecccCCcceeeeecccc------------------------------------------------------
Confidence            8888899999997776543210 000                                                      


Q ss_pred             EeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce-eEEEEeCCE
Q psy18018        317 FLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNI  395 (635)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-~~l~~~~~~  395 (635)
                                           ..............++..++++..++.|..+|..+|+.+.......... ..+......
T Consensus       107 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~  165 (238)
T PF13360_consen  107 ---------------------SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI  165 (238)
T ss_dssp             ---------------------SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred             ---------------------ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence                                 0000011112234458888888889999999999999988877644321 111000000


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCC
Q psy18018        396 LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD  475 (635)
Q Consensus       396 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d  475 (635)
                      .                      ......++ .+..+..++.+..+|+.+++.+.... .......+..+++.++.++.+
T Consensus       166 ~----------------------~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~  221 (238)
T PF13360_consen  166 N----------------------GSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSD  221 (238)
T ss_dssp             E----------------------EEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEETT
T ss_pred             c----------------------cceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEeCC
Confidence            0                      00000112 34444444433333666666544433 333444456677777777778


Q ss_pred             CcEEEEECCCCceeEE
Q psy18018        476 STVKVWDIVSGQCLQT  491 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~  491 (635)
                      +.+..||+++++.+..
T Consensus       222 ~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  222 GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCCEEeE
Confidence            8888888888776643

...

>KOG1354|consensus

Probab=99.12  E-value=3.8e-08  Score=85.37  Aligned_cols=358  Identities=14%  Similarity=0.177  Sum_probs=182.9

Q ss_pred             CcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCC------------Ccce
Q psy18018         80 DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH------------LAAV  145 (635)
Q Consensus        80 ~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h------------~~~v  145 (635)
                      +..++.++.|+  |.+||||..+|.|.++.-+....        |   -+..     ...++.|            ...|
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--------~---ey~~-----~t~fqshepEFDYLkSleieEKi   87 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--------G---EYNF-----QTEFQSHEPEFDYLKSLEIEEKI   87 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccc--------c---ceee-----eeeeeccCcccchhhhhhhhhhh
Confidence            34467999999  99999999999999987543221        1   1111     1122222            3467


Q ss_pred             EEEEe----cCCEEEEEeCCCeEEEEeCCCccceee-ccccceeEEeeeccCC-CEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        146 RCVQY----DGKLVVSGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       146 ~~l~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      ..+.|    ....+...+.|.+|++|.+........ .......  ....... ...+.+..+-.+      ...+.+.+
T Consensus        88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~--~~~~~~~lr~p~~~~~~~~v------ea~prRv~  159 (433)
T KOG1354|consen   88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG--PPGTITSLRLPVEGRHDLEV------EASPRRVY  159 (433)
T ss_pred             hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccC--CCCccceeeceeecccccee------eeeeeeec
Confidence            78888    456788888999999999876443220 0000000  0000000 000111111100      01222333


Q ss_pred             -eCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018        220 -IGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV  296 (635)
Q Consensus       220 -~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (635)
                       .+|+--|.++.++  ...+++ ..|-.|.+|+++-.....                                     -.
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sF-------------------------------------nI  201 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSF-------------------------------------NI  201 (433)
T ss_pred             cccceeEeeeeeecCccceEee-ccceeeeeccccccCCce-------------------------------------eE
Confidence             4788899999995  444544 467889999875321100                                     00


Q ss_pred             EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCce
Q psy18018        297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL  375 (635)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~  375 (635)
                      +...|..                                 .......++...|+| ..+.++-.+..|.|++-|++...+
T Consensus       202 VDIKP~n---------------------------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL  248 (433)
T KOG1354|consen  202 VDIKPAN---------------------------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL  248 (433)
T ss_pred             EEccccC---------------------------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence            0000000                                 000011122233677 456677778889999999875433


Q ss_pred             EEeeeCCCcc----ee--EEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC-CCCce
Q psy18018        376 RHTLMGHQSL----TS--GMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA-ESGNL  448 (635)
Q Consensus       376 ~~~~~~~~~~----v~--~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~  448 (635)
                      .   ..|...    ..  ...|-...+.+.                  .-.-|+.+|+++++-+ --++++||+ ...++
T Consensus       249 C---d~hsKlfEepedp~~rsffseiIsSI------------------SDvKFs~sGryilsRD-yltvk~wD~nme~~p  306 (433)
T KOG1354|consen  249 C---DAHSKLFEEPEDPSSRSFFSEIISSI------------------SDVKFSHSGRYILSRD-YLTVKLWDLNMEAKP  306 (433)
T ss_pred             h---cchhhhhccccCCcchhhHHHHhhhh------------------hceEEccCCcEEEEec-cceeEEEeccccCCc
Confidence            2   222210    00  000000000000                  0012556777776543 356888888 44566


Q ss_pred             eeeeccCCc------------cE---EEEEecCC--EEEEEeCCCcEEEEECCCCceeE-EecCCCcccc-cEEEEEecC
Q psy18018        449 RHTLMGHQS------------LT---SGMELRNN--ILVSGNADSTVKVWDIVSGQCLQ-TLSGRNKHQS-AVTCLQFNS  509 (635)
Q Consensus       449 ~~~~~~~~~------------~v---~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~-~v~~~~~~~  509 (635)
                      +.+++-|..            .|   ..++++|+  .+++|+.....++++...|.... .+..  .... ....+ ...
T Consensus       307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~a--sr~~~~~~~~-~k~  383 (433)
T KOG1354|consen  307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEA--SRKNMKPRKV-LKL  383 (433)
T ss_pred             ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccc--cccCCccccc-ccc
Confidence            666665542            11   13455555  99999999999999976654322 2211  0111 11110 123


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       510 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      +.+.+++......++                   .....+...+...+|+|..+.+|++..++ +.|+
T Consensus       384 ~~V~~~g~r~~~~~~-------------------vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  384 RLVSSSGKRKRDEIS-------------------VDALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             eeeecCCCccccccc-------------------cchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            344444443331111                   11112455677889999999999988765 5544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.11  E-value=6e-07  Score=82.46  Aligned_cols=361  Identities=12%  Similarity=0.113  Sum_probs=196.2

Q ss_pred             EEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCC-
Q psy18018        126 VWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDD-  202 (635)
Q Consensus       126 vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-  202 (635)
                      +|+..+...-..+..-.-++..+++  .|.+|++....| |.+|.-.....+.++. +..+....+.+.+.+|.+-... 
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~p   93 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSREP   93 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-cCCceecccCcccceeeeeccCC
Confidence            3444444444444445667778888  788888877655 8889887776444433 3344444455556666654432 


Q ss_pred             --------------CcEEEEECCCCeEEEEEeCCCCC--eE-EEEe--eCCEEEEeeCceeEEEecccceeeeccccccc
Q psy18018        203 --------------NTLKVWSATTGKCLRTLIGHTGG--VW-SSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDS  263 (635)
Q Consensus       203 --------------g~i~vwd~~~~~~~~~~~~h~~~--v~-~~~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~  263 (635)
                                    ..+.+||+.+|..+..+.+...+  .+ -+.|  +..+++-. ....+.++++..+....      
T Consensus        94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~------  166 (561)
T COG5354          94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEH------  166 (561)
T ss_pred             ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccC------
Confidence                          35999999999999998876665  34 3334  44444333 33456777652211000      


Q ss_pred             cCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCC
Q psy18018        264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV  343 (635)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (635)
                       +-                                                                      .......
T Consensus       167 -p~----------------------------------------------------------------------~~lr~~g  175 (561)
T COG5354         167 -PF----------------------------------------------------------------------KNLRPVG  175 (561)
T ss_pred             -ch----------------------------------------------------------------------hhccccc
Confidence             00                                                                      0000011


Q ss_pred             CceEEEEecC--cEEEE-----ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCc
Q psy18018        344 PDLFGFQFDG--VHVVS-----GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       344 ~~~~~~s~~~--~~l~~-----~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~  414 (635)
                      ..-..++|.+  ..|+.     ....+.+++|.+..+..+....-....-..+.|+  ++++..-.              
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~--------------  241 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV--------------  241 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE--------------
Confidence            1112233321  11221     3456778888877665554332222222333343  33322110              


Q ss_pred             ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCE--EEEEeCCCcEEEEECCCCceeE
Q psy18018        415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNI--LVSGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~--l~s~~~dg~i~iwd~~~~~~~~  490 (635)
                          ......+..++    .+..++++++......... .-.++|..+.|.  ++.  +++|-.+..+.++|++.. ...
T Consensus       242 ----~t~~ksnKsyf----gesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~  311 (561)
T COG5354         242 ----MTHTKSNKSYF----GESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF  311 (561)
T ss_pred             ----EEeeeccccee----ccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence                00011111111    2456778887744433333 567899999984  443  445567889999999865 333


Q ss_pred             EecCCCcccccEEEEEecCCEEEEEeCC---CcEEEEECCCCceee-eeccceecCceeEEeccCceecccccCCCeEEE
Q psy18018        491 TLSGRNKHQSAVTCLQFNSRFVITSSDD---GTVKLWDVKTGEFST-PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI  566 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  566 (635)
                      .+..  ..... ..+...+++++.++-|   |.+-+||........ .+.             ....+-+.|+||++++.
T Consensus       312 ~~Pe--~~rNT-~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------------~~n~s~~~wspd~qF~~  375 (561)
T COG5354         312 YFPE--QKRNT-IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------------GLNTSYCDWSPDGQFYD  375 (561)
T ss_pred             ecCC--ccccc-ccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------------cCCceEeeccCCceEEE
Confidence            3332  11111 1234468888887755   679999987654333 222             22344567999999988


Q ss_pred             Eec------CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        567 TSS------DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       567 ~~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      +..      .|..++|||+...+..             ..+.+.|.|.|++..+.+.+.
T Consensus       376 ~~~ts~k~~~Dn~i~l~~v~g~~~f-------------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         376 TDTTSEKLRVDNSIKLWDVYGAKVF-------------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ecCCCcccccCcceEEEEecCchhh-------------hhhhccccCCcccceeeccCC
Confidence            864      3678999998754432             234455566565555544443

>KOG2314|consensus

Probab=99.09  E-value=1.9e-07  Score=86.55  Aligned_cols=229  Identities=13%  Similarity=0.099  Sum_probs=122.8

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      +.+|.|++++|.-..+ .|.+|+..+..++..-.-.-..|....|++.       +..+..|-..+......        
T Consensus       311 frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~-------~~llAYwtpe~~~~par--------  374 (698)
T KOG2314|consen  311 FRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPT-------SNLLAYWTPETNNIPAR--------  374 (698)
T ss_pred             EEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCC-------cceEEEEcccccCCcce--------
Confidence            3478888888877764 5888887764444333333456666777643       22233343333222211        


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEE----------EeCCCcEEEEECCCCcee-EEec
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVS----------GNADSTVKVWDIVSGQCL-QTLS  493 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s----------~~~dg~i~iwd~~~~~~~-~~~~  493 (635)
                                 +.+..+.+++.+++..-+.-.-..+.|  +|++|+.          .+.-..+.|+.++..... ..+.
T Consensus       375 -----------vtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve  443 (698)
T KOG2314|consen  375 -----------VTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE  443 (698)
T ss_pred             -----------EEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence                       222233333333222222211122222  2333322          122234667776654432 2222


Q ss_pred             CCCcccccEEEEEe--cCCEEEEEeC---CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        494 GRNKHQSAVTCLQF--NSRFVITSSD---DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       494 ~~~~~~~~v~~~~~--~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                          ....|..++|  .|+.+++-+.   ..++.+|.+++....-.+..        . .-....+.+.|+|.|++++.+
T Consensus       444 ----lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--------~-~dk~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  444 ----LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--------E-LDKKFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             ----cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--------h-hcccccceEEEcCCCcEEEEE
Confidence                4567888888  4665554442   35688888874211111100        0 012356778999999999876


Q ss_pred             ---cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        569 ---SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       569 ---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                         +..|.+.++|+.-..+...-     .+.-...+.+.|.|.|+|+++++....
T Consensus       511 ~l~s~~g~l~F~D~~~a~~k~~~-----~~eh~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  511 ALVSRRGDLEFYDTDYADLKDTA-----SPEHFAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             EecccccceEEEecchhhhhhcc-----CccccccccceECCCCCEEEEeeehhh
Confidence               45789999998743322211     112234678899999999999987654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.09  E-value=5.9e-08  Score=95.82  Aligned_cols=184  Identities=16%  Similarity=0.174  Sum_probs=111.0

Q ss_pred             EeeCCcEEEEEeCC---CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEE-EEeCCC--cEEEEECCCCceeEEec
Q psy18018        422 CLFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILV-SGNADS--TVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       422 ~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~  493 (635)
                      ++|||++|+.+..+   ..|++||+.+++.... ..+...+.++.|  +++.|+ +.+.++  .|++||+.+++.. .+.
T Consensus       197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~  274 (417)
T TIGR02800       197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT  274 (417)
T ss_pred             CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC
Confidence            44666666665543   4688888887755332 233333444444  566554 444444  5888998876543 333


Q ss_pred             CCCcccccEEEEEe--cCCEEEEEeCC-C--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        494 GRNKHQSAVTCLQF--NSRFVITSSDD-G--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       494 ~~~~~~~~v~~~~~--~~~~l~~~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      .   +........|  |++.|+..+.. +  .|+++|+.+++... +..           +........|+||+++++.+
T Consensus       275 ~---~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~-----------~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       275 N---GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF-----------RGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             C---CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec-----------CCCCccCeEECCCCCEEEEE
Confidence            2   2222233344  78887766543 3  58888887665322 111           23445678899999999988


Q ss_pred             cCCC---eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        569 SDDG---TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       569 ~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +.++   .|.+||+.++.. ..+..      ........|+|||++|+..+.++.. -.++..+.
T Consensus       340 ~~~~~~~~i~~~d~~~~~~-~~l~~------~~~~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~  396 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGE-RVLTD------TGLDESPSFAPNGRMILYATTRGGR-GVLGLVST  396 (417)
T ss_pred             EccCCceEEEEEeCCCCCe-EEccC------CCCCCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence            8776   899999988654 23311      1123456899999988887776542 23555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190|consensus

Probab=99.08  E-value=1.3e-09  Score=100.38  Aligned_cols=294  Identities=15%  Similarity=0.200  Sum_probs=180.7

Q ss_pred             EEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC
Q psy18018        135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT  212 (635)
Q Consensus       135 ~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  212 (635)
                      ++.+.||+..|..++-  +.+.+++++.|++|++|.+...-                            |+      +.+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg----------------------------D~------~~t  773 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG----------------------------DE------IGT  773 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc----------------------------Cc------ccc
Confidence            4567799999998877  67789999999999999875421                            10      134


Q ss_pred             CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018        213 GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL  292 (635)
Q Consensus       213 ~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (635)
                      ..+..+++.|..+|.++.|-...-..++.||.|.+||.--+.+..                                   
T Consensus       774 saCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~La-----------------------------------  818 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLA-----------------------------------  818 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhH-----------------------------------
Confidence            556678889999999999954444455668999999953322100                                   


Q ss_pred             eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEe-cCCCeEEEEEc
Q psy18018        293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSG-SLDTSIRVWEA  370 (635)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~-~~dg~i~v~~~  370 (635)
                                                              ........+....+.++.. +...++.| +...+|+++|.
T Consensus       819 ----------------------------------------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da  858 (1034)
T KOG4190|consen  819 ----------------------------------------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA  858 (1034)
T ss_pred             ----------------------------------------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence                                                    0000111112222223322 34445555 67889999999


Q ss_pred             cCCceEEeeeCC-----CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        371 ESGNLRHTLMGH-----QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       371 ~~~~~~~~~~~~-----~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                      +..+...+++.-     ...+.+++                               ..+.|+.++++-.+|.|.+.|.++
T Consensus       859 Rsce~~~E~kVcna~~Pna~~R~ia-------------------------------Va~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  859 RSCEWTCELKVCNAPGPNALTRAIA-------------------------------VADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             ccccceeeEEeccCCCCchheeEEE-------------------------------eccCcchhhHHhcCCcEEEEecCC
Confidence            887766555422     22223332                               235677788888888899999999


Q ss_pred             CceeeeeccCCccEEEEE-ecCCEEEEEeCCCcEEE-EECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEE
Q psy18018        446 GNLRHTLMGHQSLTSGME-LRNNILVSGNADSTVKV-WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKL  523 (635)
Q Consensus       446 ~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v  523 (635)
                      |+.+..+...+-....++ ++.+.++....|.++.+ |-..++......+.   ...+..-+.--|..|+++.....+.+
T Consensus       908 G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kp---ppepahflqsvgpSLV~a~~Gn~lgV  984 (1034)
T KOG4190|consen  908 GKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKP---PPEPAHFLQSVGPSLVTAQNGNILGV  984 (1034)
T ss_pred             CceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCC---CCcchhhhhccCceeEEeccCcEEEE
Confidence            988877766554444443 35667777788888888 87776665544443   22222223334677777777677777


Q ss_pred             EECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        524 WDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       524 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      |.-.. +...    ......+....+.+..++++.-|-..-++.|.+.|.|.+
T Consensus       985 Yad~a-~~ha----~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  985 YADSA-ELHA----ESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             Eecch-hhhh----hhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            75321 1000    000111112235667778888887776667888888775

>KOG4532|consensus

Probab=99.07  E-value=8.7e-08  Score=80.24  Aligned_cols=221  Identities=11%  Similarity=0.056  Sum_probs=145.1

Q ss_pred             eCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC-----------CcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE
Q psy18018        392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD-----------GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS  460 (635)
Q Consensus       392 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~  460 (635)
                      ...+|+.++..|...+|...+.+......-.+.+           ...+..++.|.++++++++-+.....+....-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            3568999999999999998866544333322222           22466677888888888875544333222211244


Q ss_pred             EEE--ecCCEEEEEeCCCcEEEEECCCC-ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeee
Q psy18018        461 GME--LRNNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPL  535 (635)
Q Consensus       461 ~~~--~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~  535 (635)
                      .++  .++.++++.++...|..|.+... +.+..... ......-.+.+|  ....+|+++.||++.|||++........
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            444  46889999999999999998753 22222111 112233344555  5788999999999999999976533222


Q ss_pred             ccceecCceeEEeccCceecccccCCCe--EEEEecCCCeEEEEeCCCCceEEeeeeccC---CCCCceEEEEEeCCCCe
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSR--FVITSSDDGTVKLWDVKTGEFIRNLVSLDS---GGSGGVVWRIRASETKL  610 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---~~~~~~i~~l~~s~d~~  610 (635)
                      ...  ..|    .|.+.+..+.|+|-|.  +|+..-.-+.+.+-|+++++....+...+.   ......|..-.|+.++.
T Consensus       242 ~ss--trp----~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  242 ISS--TRP----HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             hcc--cCC----CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence            221  111    2788999999998663  566666678899999999877666543321   12223488889999998


Q ss_pred             EEEEccCCC
Q psy18018        611 VCAVGSRNG  619 (635)
Q Consensus       611 ~l~~~~~dg  619 (635)
                      -..+.+++-
T Consensus       316 s~~v~~e~~  324 (344)
T KOG4532|consen  316 SNDVKNELQ  324 (344)
T ss_pred             ccccccchh
Confidence            888777765

>KOG0280|consensus

Probab=99.07  E-value=1.8e-08  Score=85.37  Aligned_cols=174  Identities=17%  Similarity=0.270  Sum_probs=122.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeccCCc---cEE-EE--Ee--cCCEEEEEeCCCcEEEEECCCCceeE--EecCCCc
Q psy18018        428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTS-GM--EL--RNNILVSGNADSTVKVWDIVSGQCLQ--TLSGRNK  497 (635)
Q Consensus       428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~-~~--~~--~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~  497 (635)
                      .++-+...|.|.+|..........+.+-..   .+. ++  .+  .+..++++..+|.+.+-+........  .++.   
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~---  163 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV---  163 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc---
Confidence            466677889999998766555444544322   222 33  33  46689999999999966665544333  5555   


Q ss_pred             ccccEEEEEe---cCCEEEEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCC
Q psy18018        498 HQSAVTCLQF---NSRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDG  572 (635)
Q Consensus       498 ~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~  572 (635)
                      |.-......|   +.+.+.+|++|+.+..||++. ++.+..-          ...|...|.++.-+| .+.+++||+.|-
T Consensus       164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe  233 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDE  233 (339)
T ss_pred             cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----------ceeeecceEEEecCCCCCceEEEecccc
Confidence            8888888888   478999999999999999993 2222211          123677788887775 578999999999


Q ss_pred             eEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCC--CeEEEEccCCCe
Q psy18018        573 TVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASET--KLVCAVGSRNGT  620 (635)
Q Consensus       573 ~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d--~~~l~~~~~dg~  620 (635)
                      .|++||.+. ++.+..-      ...+.||++..+|.  +++|+++.-+|.
T Consensus       234 ~i~~~DtRnm~kPl~~~------~v~GGVWRi~~~p~~~~~lL~~CMh~G~  278 (339)
T KOG0280|consen  234 CIRVLDTRNMGKPLFKA------KVGGGVWRIKHHPEIFHRLLAACMHNGA  278 (339)
T ss_pred             ceeeeehhcccCccccC------ccccceEEEEecchhhhHHHHHHHhcCc
Confidence            999999884 4544333      45688999999995  457777777774

>KOG0309|consensus

Probab=99.04  E-value=3.9e-09  Score=100.70  Aligned_cols=196  Identities=20%  Similarity=0.259  Sum_probs=132.2

Q ss_pred             ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecC-CCCCCceeeccCcceEEEEEEc-----CCEEEEee
Q psy18018         25 DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTR-PIKDPKVLKGHDDHVITCLQFS-----GSRIVSGS   98 (635)
Q Consensus        25 ~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~-~~~~~~~l~~h~~~vi~~~~~s-----~~~l~s~~   98 (635)
                      .+++ .++.++    |-|+=+|.++..+.+         +-|.. ++.+.+-|..-+.+-+..+.|+     ...+++-+
T Consensus        24 ~~~~-~a~si~----p~grdi~lAsr~gl~---------i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts   89 (1081)
T KOG0309|consen   24 DGGF-NAVSIN----PSGRDIVLASRQGLY---------IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS   89 (1081)
T ss_pred             cCcc-cceeec----cccchhhhhhhcCeE---------EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC
Confidence            3445 788899    889999888754322         24443 5555555554444445667777     23333333


Q ss_pred             CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccce
Q psy18018         99 DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECL  175 (635)
Q Consensus        99 ~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~  175 (635)
                       ...-.+|++...                  ........+.+|..+|+.+.|   ....|++++.|..+..||+......
T Consensus        90 -~qkaiiwnlA~s------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p  150 (1081)
T KOG0309|consen   90 -NQKAIIWNLAKS------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP  150 (1081)
T ss_pred             -cchhhhhhhhcC------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence             333446665422                  123445567799999999999   5678999999999999999876432


Q ss_pred             -eecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEec
Q psy18018        176 -HAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWS  249 (635)
Q Consensus       176 -~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~  249 (635)
                       .....- ...........+..+++.+....|++||.+. +.++..+++|...|..+.|+   -..+.+.+.||++++||
T Consensus       151 ~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  151 FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD  230 (1081)
T ss_pred             eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence             221111 1112222223345666777888999999987 46778899999999999995   56899999999999999


Q ss_pred             ccce
Q psy18018        250 NAER  253 (635)
Q Consensus       250 ~~~~  253 (635)
                      .+..
T Consensus       231 y~kS  234 (1081)
T KOG0309|consen  231 YSKS  234 (1081)
T ss_pred             cccc
Confidence            7653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.04  E-value=9.9e-07  Score=87.73  Aligned_cols=132  Identities=14%  Similarity=0.187  Sum_probs=89.3

Q ss_pred             CeEEEEEccCCceEEeeeCCCc----------ce-eEEE-EeCC---EEEEEeCCCcEEEEEccCCcceeEEEEE----e
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQS----------LT-SGME-LRNN---ILVSGNADSTVKVWDIVSGTKKLMFRIC----L  423 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~----------~v-~~l~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~  423 (635)
                      +.|.-+|..+|+.+..++.-..          ++ ..+. .++.   .++.++.+|.+...|..+++........    .
T Consensus       256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~  335 (488)
T cd00216         256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMA  335 (488)
T ss_pred             eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccc
Confidence            3688888888888776542111          11 1111 2222   6778889999999999999887765431    1


Q ss_pred             eCCcEEEEEe------------------CCCcEEEEeCCCCceeeeeccCC--------cc--EEEEEecCCEEEEEeCC
Q psy18018        424 FDGVHVVSGS------------------LDTSIRVWEAESGNLRHTLMGHQ--------SL--TSGMELRNNILVSGNAD  475 (635)
Q Consensus       424 ~~~~~l~~~~------------------~d~~i~~~d~~~~~~~~~~~~~~--------~~--v~~~~~~~~~l~s~~~d  475 (635)
                      .+...+..+.                  .+|.+..+|+.+|+.+.+.....        .+  ...+...++.++.++.|
T Consensus       336 ~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~d  415 (488)
T cd00216         336 YDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAAD  415 (488)
T ss_pred             cCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCC
Confidence            1224444432                  36789999999999887765431        11  12345577899999999


Q ss_pred             CcEEEEECCCCceeEEecC
Q psy18018        476 STVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~  494 (635)
                      |.++.+|.++|+.+...+.
T Consensus       416 G~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         416 GYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CeEEEEECCCCceeeEEEC
Confidence            9999999999999988764

The alignment model contains an 8-bladed beta-propeller.

>KOG1275|consensus

Probab=99.03  E-value=5.7e-09  Score=102.10  Aligned_cols=185  Identities=17%  Similarity=0.198  Sum_probs=145.9

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEE
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  503 (635)
                      .++..++.|+....+..+|+.+.+..+...-..+.+.-|..+++.+.+|...|+|.+-|+.+.+.+.++..   |.+.|.
T Consensus       145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a---Hs~siS  221 (1118)
T KOG1275|consen  145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDA---HSGSIS  221 (1118)
T ss_pred             cCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeec---ccccee
Confidence            36778888888889999999999888877766667888999999999999999999999999999999998   999999


Q ss_pred             EEEecCCEEEEEeC---------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecCCCe
Q psy18018        504 CLQFNSRFVITSSD---------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDDGT  573 (635)
Q Consensus       504 ~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~  573 (635)
                      .+...|+.|++++.         |.-|+|||++.-+.+.++..+.            .-.-+.|.|. ...+++++..|.
T Consensus       222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------------~P~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------------GPQFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------------CchhhhhcccccceEEEEecccc
Confidence            99999999999985         4558999999887776665431            1133556664 456778888999


Q ss_pred             EEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        574 VKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       574 v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      ..+-|..+ ++.......+  ...++.+.++.+|+.|..||.|..+|.  +.+|.
T Consensus       290 ~q~vd~~~lsNP~~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~--v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMV--NPNGSGISAFDISSNGDALAFGDHEGH--VNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeEE--ccCCCcceeEEecCCCceEEEecccCc--Eeeec
Confidence            99999332 2221111111  234556999999999999999999998  77776

>KOG4190|consensus

Probab=99.01  E-value=1.4e-09  Score=100.07  Aligned_cols=219  Identities=16%  Similarity=0.202  Sum_probs=154.5

Q ss_pred             CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC-------CCCceeeccCcceEEEEEE
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI-------KDPKVLKGHDDHVITCLQF   89 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~-------~~~~~l~~h~~~vi~~~~~   89 (635)
                      .++.+.||.+.| ++++--    .+..-..+++.+        +.+.+|..++.       .+..+.+.|+.++ ..+.|
T Consensus       727 rL~nf~GH~~~i-Rai~Ai----dNENSFiSASkD--------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i-~~igf  792 (1034)
T KOG4190|consen  727 RLCNFTGHQEKI-RAIAAI----DNENSFISASKD--------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPI-HDIGF  792 (1034)
T ss_pred             eeecccCcHHHh-HHHHhc----ccccceeeccCC--------ceEEEEEeccccCccccceeeeEhhhccCcc-cceee
Confidence            457889999998 887665    455555666654        44556987653       2445667899888 89988


Q ss_pred             cCCEEEEeeCCCcEEEEECCCCcEE-------------------------EEEe-eCCCcEEEEeCCCCeEEEEee----
Q psy18018         90 SGSRIVSGSDDNTLKVWSATTGKCL-------------------------LVSG-SRDATLRVWHIESGECLHVLV----  139 (635)
Q Consensus        90 s~~~l~s~~~d~~v~vWd~~~~~~l-------------------------l~~~-~~dg~i~vwd~~~~~~~~~l~----  139 (635)
                      -...-..++-||-|.+||.--|+.+                         +++| +...+++++|.+.++-...++    
T Consensus       793 L~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  793 LADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             eeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence            7222233455899999998665554                         4444 788999999999887766665    


Q ss_pred             -CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEE-EECCCCeE
Q psy18018        140 -GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKV-WSATTGKC  215 (635)
Q Consensus       140 -~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~  215 (635)
                       +..+.+.+++.  .|++++.+-.+|.|.+.|.++|+.+.....-..-......+.+..|+....|.++.+ |-..++..
T Consensus       873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCee
Confidence             44567888888  799999999999999999999987765433332233334455667777778888888 88777766


Q ss_pred             EEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEec
Q psy18018        216 LRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWS  249 (635)
Q Consensus       216 ~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~  249 (635)
                      ..+.+....+..-+.--|.-++++.....+.+|.
T Consensus       953 h~q~kpppepahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  953 HLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             eeccCCCCcchhhhhccCceeEEeccCcEEEEEe
Confidence            6555544444333333477788888888888875

>KOG1064|consensus

Probab=99.01  E-value=3.7e-09  Score=110.76  Aligned_cols=181  Identities=17%  Similarity=0.374  Sum_probs=141.4

Q ss_pred             ceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEE----------EeeCCcEEEEEeCCCcEEEEeCCCCceeeee
Q psy18018        385 LTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRI----------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTL  452 (635)
Q Consensus       385 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  452 (635)
                      .|.++.-+  ..+.++|+.||.+++|.-..+......+.          ++..|+.+..+..||.+.+|.+. .++....
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence            44444433  45788999999999998877766665553          66789999999999999999987 6677777


Q ss_pred             ccCCccEEEEEecCCEEEEEe---CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018        453 MGHQSLTSGMELRNNILVSGN---ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       453 ~~~~~~v~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~  527 (635)
                      +.|......+.|-+..+++++   +++.+.+||.--.....-+.  ..|...++++++  ..+.|++|+.+|.|++||++
T Consensus      2289 qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence            889998889998778888775   56889999965332222221  348889999998  57899999999999999999


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ..++...++.                    +. ...++++|+..|.++||++..-..+..+.
T Consensus      2367 qrql~h~~~~--------------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2367 QRQLRHTFQA--------------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             HHHHHHHhhh--------------------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            8887665543                    22 56789999999999999999888887774

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=1.2e-05  Score=85.20  Aligned_cols=365  Identities=12%  Similarity=0.115  Sum_probs=194.8

Q ss_pred             ceeEEeeeccCCCEEEEEeCCCcEEEE----ECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceee
Q psy18018        182 TEVELSHGYALRSRIVSGSDDNTLKVW----SATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERIL  255 (635)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~dg~i~vw----d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~  255 (635)
                      ..+.....+++...++.+..+|.|.+.    +..+... .....-...|.+++|+  +..|+....++++.+.+..-...
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i  154 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI  154 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence            456666677778889999999999999    5443322 2222345689999995  77899898899888875433221


Q ss_pred             eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchh----hhhhh
Q psy18018        256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR----EKCLE  331 (635)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  331 (635)
                      .-..+ .......                       ..           .+..+...+.-++.......-.    .....
T Consensus       155 ~E~~l-~~~~~~~-----------------------~~-----------~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  155 SEVPL-DSDDFGE-----------------------SK-----------HVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             EEeec-CccccCC-----------------------Cc-----------eeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            11000 0000000                       00           1111111111111111111000    00000


Q ss_pred             -hhhhccccccCCCceEEEEecCcEEEEecC------CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC
Q psy18018        332 -AATLHRNKKTHVPDLFGFQFDGVHVVSGSL------DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD  402 (635)
Q Consensus       332 -~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d  402 (635)
                       ....... .......++|..||.++|+.+.      ...+++|+-+ |.....-..-.+--.+++|.  ++++++....
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~  277 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL  277 (928)
T ss_pred             ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence             0000001 2334556778889999998764      2578888855 65544444333444455554  4444443221


Q ss_pred             CcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee----eccCCccEEEEEec--CCEEEEEeCCC
Q psy18018        403 STVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT----LMGHQSLTSGMELR--NNILVSGNADS  476 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~v~~~~~~--~~~l~s~~~dg  476 (635)
                      .                              ....|.+|+-. |-....    +......|..+.|+  +..|+..-.|.
T Consensus       278 ~------------------------------~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~  326 (928)
T PF04762_consen  278 P------------------------------DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR  326 (928)
T ss_pred             C------------------------------CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence            0                              12345555432 322222    22345678889985  56888877665


Q ss_pred             cEEEEECCCCce--eEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECC----CCc--------e--------
Q psy18018        477 TVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVK----TGE--------F--------  531 (635)
Q Consensus       477 ~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~----~~~--------~--------  531 (635)
                       |.+|-..+..-  .+++..  .....+..+.|+   ...|...+.+|.+..++..    .+.        .        
T Consensus       327 -vqLWt~~NYHWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~  403 (928)
T PF04762_consen  327 -VQLWTRSNYHWYLKQEIRF--SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNK  403 (928)
T ss_pred             -ceEEEeeCCEEEEEEEEEc--cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCe
Confidence             99998876542  222221  122334447774   5567666666666554432    111        1        


Q ss_pred             --eeeeccceecCc--eeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceE--------Eeeee-----ccCC
Q psy18018        532 --STPLMSSFILNP--FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI--------RNLVS-----LDSG  594 (635)
Q Consensus       532 --~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~--------~~~~~-----~~~~  594 (635)
                        +.++.....+.|  ...+....+|.+++|++++..+|+-..||.+.+|........        ..+..     ....
T Consensus       404 lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (928)
T PF04762_consen  404 LLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSE  483 (928)
T ss_pred             EEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccc
Confidence              111211111222  234556778999999999988999999999999986543221        11110     0011


Q ss_pred             CCCceEEEEEeCCCCeEEEEccCC
Q psy18018        595 GSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       595 ~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                      .....+..++|..+..+++....+
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  484 LPLGSLRQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             cccccEEEEEEeCCCEEEEEEecC
Confidence            234568899999988887777775

>KOG4649|consensus

Probab=98.99  E-value=8.5e-06  Score=68.46  Aligned_cols=108  Identities=19%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             EEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEE-eeec
Q psy18018        113 CLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL-SHGY  190 (635)
Q Consensus       113 ~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~  190 (635)
                      .+++.|+-.+.+..-|..+|+.+.+-. -..+|.+-+. -|++++.|+..|.+.+.+..+|+....+.....+.. ....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            345556666666666666666554321 2334554444 688899999999999999999988877766555443 3444


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018        191 ALRSRIVSGSDDNTLKVWSATTGKCLRTLIG  221 (635)
Q Consensus       191 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  221 (635)
                      .+++.+..++.|++.+..|..+..++...+.
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEeccc
Confidence            5678999999999999999999888877654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.99  E-value=2e-06  Score=85.65  Aligned_cols=144  Identities=17%  Similarity=0.243  Sum_probs=88.7

Q ss_pred             cEEEEeCCCCceeeeecc--CCc--------cE-EEEE-ecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        437 SIRVWEAESGNLRHTLMG--HQS--------LT-SGME-LRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~--~~~--------~v-~~~~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      .+.-+|..+|+....++.  |..        ++ ..+. .++.   .++.++.+|.+...|.++|+.+......      
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------  330 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------  330 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------
Confidence            799999999999887652  211        11 1111 2333   6788889999999999999988876531      


Q ss_pred             EEEEEecCCEEEEE------------------eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        502 VTCLQFNSRFVITS------------------SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       502 v~~~~~~~~~l~~~------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      ...++.+...++.+                  ..+|.+.-.|+.+|+.+-...........   ....+...-.....+.
T Consensus       331 ~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~---~~g~~~~~~~~~~~g~  407 (488)
T cd00216         331 EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSW---NIGFPHWGGSLATAGN  407 (488)
T ss_pred             ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccc---ccCCcccCcceEecCC
Confidence            01122222333332                  24678888999999877665432100000   0000110001112567


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        564 FVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      +|++++.||.++.+|.++|+.+.+..
T Consensus       408 ~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         408 LVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             eEEEECCCCeEEEEECCCCceeeEEE
Confidence            88889999999999999999999874

The alignment model contains an 8-bladed beta-propeller.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.98  E-value=5.5e-07  Score=88.98  Aligned_cols=90  Identities=10%  Similarity=0.050  Sum_probs=53.1

Q ss_pred             cEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEEeeeccCCCEEE
Q psy18018        123 TLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIV  197 (635)
Q Consensus       123 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (635)
                      .|.++|....+ .+.+..+...+...+|  ||++|+.++.+   ..|.+||+.+++.................+++..|+
T Consensus       171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            58888876444 4445567777888888  89999887754   479999998875433222222222223334445554


Q ss_pred             EE-eCCC--cEEEEECCCC
Q psy18018        198 SG-SDDN--TLKVWSATTG  213 (635)
Q Consensus       198 ~~-~~dg--~i~vwd~~~~  213 (635)
                      .. ..++  .|++||+.++
T Consensus       250 ~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             EEECCCCCccEEEEECCCC
Confidence            33 3332  3555565544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=3.3e-07  Score=90.54  Aligned_cols=189  Identities=16%  Similarity=0.177  Sum_probs=114.5

Q ss_pred             EEEEeeCCcEEEEEeCC---CcEEEEeCCCCceeeeeccCCccEE--EEEecCCEEE-EEeCCC--cEEEEECCCCceeE
Q psy18018        419 FRICLFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLTS--GMELRNNILV-SGNADS--TVKVWDIVSGQCLQ  490 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~  490 (635)
                      ...++|||+.|+..+.+   ..|.+||+.+++... +....+...  .++++++.++ +.+.+|  .|++||+.+++.. 
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-  280 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-  280 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence            34578999998876644   368999998876543 222222233  3444667665 455555  5888899877644 


Q ss_pred             EecCCCcccccEEEEEe--cCCEEEEEeC-CC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVITSSD-DG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      .+..   +........|  |++.++..+. ++  .|+++++.+++.......            ........|+|||++|
T Consensus       281 ~lt~---~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~------------~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        281 RVTN---HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV------------GNYNARPRLSADGKTL  345 (430)
T ss_pred             Eccc---CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC------------CCCccceEECCCCCEE
Confidence            3433   2233334455  7777766553 33  577788877763321110            1122346799999999


Q ss_pred             EEecCC-C--eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        566 ITSSDD-G--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       566 ~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      +..+.+ +  .|.+||+.+++. ..+..   ..   ......|+|||++|+..+.++. ..+|+.++.+.
T Consensus       346 ~~~~~~~~~~~l~~~dl~tg~~-~~lt~---~~---~~~~p~~spdg~~i~~~~~~~g-~~~l~~~~~~g  407 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQRGSV-RILTD---TS---LDESPSVAPNGTMLIYATRQQG-RGVLMLVSING  407 (430)
T ss_pred             EEEEccCCceEEEEEECCCCCE-EEccC---CC---CCCCceECCCCCEEEEEEecCC-ceEEEEEECCC
Confidence            877643 3  588999998875 33321   11   1224589999998887765432 24577777653

>KOG0882|consensus

Probab=98.95  E-value=3.4e-08  Score=88.81  Aligned_cols=312  Identities=16%  Similarity=0.120  Sum_probs=189.6

Q ss_pred             ccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCE
Q psy18018         78 GHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKL  154 (635)
Q Consensus        78 ~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~  154 (635)
                      .|.+.+ +.+... .+++.+++-||.++.|.-..-.                  .-+.+..+..|.+.|.+++.  ++.+
T Consensus         7 mhrd~i-~hv~~tka~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg~L   67 (558)
T KOG0882|consen    7 MHRDVI-THVFPTKAKFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDGWL   67 (558)
T ss_pred             ccccee-eeEeeehhheEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhcccccee
Confidence            477755 777777 9999999999999999764211                  12455667789999988877  8999


Q ss_pred             EEEEeC-CCeEEEEeCCCccceeeccccc-eeEEeeeccCC----CEEEEEeCCCcEEEEECCCC--eEEEEEeCCCCCe
Q psy18018        155 VVSGAY-DYMVKIWNPDTEECLHAELQET-EVELSHGYALR----SRIVSGSDDNTLKVWSATTG--KCLRTLIGHTGGV  226 (635)
Q Consensus       155 l~s~~~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v  226 (635)
                      +.|.+. |..++++|+++-..+....... +........++    ..-+....++.+.++|-...  +....-.-|..+|
T Consensus        68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV  147 (558)
T KOG0882|consen   68 FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV  147 (558)
T ss_pred             EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence            999787 9999999998776553322221 12222223333    23334456789999996543  3334445699999


Q ss_pred             EEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        227 WSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       227 ~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      ..+.+.  ++.+++....|.|.-|..+.. +...+.                                            
T Consensus       148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-~qfPr~--------------------------------------------  182 (558)
T KOG0882|consen  148 KKIRYNQAGDSAVSIDISGMVEYWSAEGP-FQFPRT--------------------------------------------  182 (558)
T ss_pred             EEEEeeccccceeeccccceeEeecCCCc-ccCccc--------------------------------------------
Confidence            999985  788999999999999997641 100000                                            


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS  384 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~  384 (635)
                                       ...|... .+.........-..+..+.|+|++..+.+-..|..|++++..+++.++.+..-..
T Consensus       183 -----------------~l~~~~K-~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t  244 (558)
T KOG0882|consen  183 -----------------NLNFELK-HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT  244 (558)
T ss_pred             -----------------ccccccc-ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence                             0000000 0000011122234556788999999999999999999999999987766543211


Q ss_pred             ----------ceeEEEEeCCEEEEEeCCCcEEEEEcc-CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec
Q psy18018        385 ----------LTSGMELRNNILVSGNADSTVKVWDIV-SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  453 (635)
Q Consensus       385 ----------~v~~l~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  453 (635)
                                .+..+.+..+ +++-   .     +++ .+.......++...+++|+.++-=| |++.++.++...+.+-
T Consensus       245 ~~~~q~ks~y~l~~VelgRR-mave---r-----elek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  245 DAQYQPKSPYGLMHVELGRR-MAVE---R-----ELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhhccccccccceeehhhh-hhHH---h-----hHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                      1222222100 0000   0     000 1112233344666777777776666 7778887776655442


Q ss_pred             c---------------------------CCccEEEEEecCCEEEEEeCCCcEEEE
Q psy18018        454 G---------------------------HQSLTSGMELRNNILVSGNADSTVKVW  481 (635)
Q Consensus       454 ~---------------------------~~~~v~~~~~~~~~l~s~~~dg~i~iw  481 (635)
                      .                           ..++......++.+++++-....++++
T Consensus       315 k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  315 KDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             cchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence            1                           111222222355677777777778877

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=4.7e-07  Score=88.93  Aligned_cols=188  Identities=15%  Similarity=0.130  Sum_probs=111.1

Q ss_pred             EEEEeeCCcEEEEEeCC---CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEE-EEeCCCc--EEEEECCCCceeE
Q psy18018        419 FRICLFDGVHVVSGSLD---TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILV-SGNADST--VKVWDIVSGQCLQ  490 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~  490 (635)
                      ...++|||+.|+..+.+   ..|+++|+.+++....  +.++.. -..++++++.++ +.+.++.  |+++|+.+++.. 
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-  299 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-  299 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-
Confidence            34688999998877543   2688999988765322  222221 123455677665 4566665  777888877643 


Q ss_pred             EecCCCcccccEEEEEe--cCCEEEEEeC-CC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVITSSD-DG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      .+..   +.......+|  |++.++..+. ++  .|+++|+.+++..... .           ........+|+|||++|
T Consensus       300 ~lt~---~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~-----------~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        300 RITR---HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-F-----------EGEQNLGGSITPDGRSM  364 (448)
T ss_pred             ECcc---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-c-----------CCCCCcCeeECCCCCEE
Confidence            3332   2233344455  7887766553 33  4677777776643211 0           11122346899999988


Q ss_pred             EEecCC-C--eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        566 ITSSDD-G--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       566 ~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +..+.+ +  .|.++|+.+++.. .+..   ...   .....|+|||++|+....++. .-.+|.+|.+
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~-~lt~---~~~---d~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~  425 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQ-VLTS---TRL---DESPSVAPNGTMVIYSTTYQG-KQVLAAVSID  425 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeE-EccC---CCC---CCCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence            876543 3  4666788887643 3321   111   224479999998877665543 2457777764

>KOG4649|consensus

Probab=98.95  E-value=7.2e-06  Score=68.89  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC-Ce-EEE
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG-GV-WSS  229 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v-~~~  229 (635)
                      ..+++.|+-.+.+.--|..+|....+......+...... -++.++.|+..|.+++.+..+|.....+..-.. .+ ..+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            445666666677777777777666655544444433333 467788888899999888888877666542111 11 112


Q ss_pred             EeeCCEEEEeeCceeEEEecc
Q psy18018        230 QMAGNIIISGSTDRTLKGWSN  250 (635)
Q Consensus       230 ~~~~~~l~s~~~dg~i~~w~~  250 (635)
                      ++++..+..++.|++....|.
T Consensus       102 d~~~glIycgshd~~~yalD~  122 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDP  122 (354)
T ss_pred             cCCCceEEEecCCCcEEEecc
Confidence            334444444444444444443

>KOG1064|consensus

Probab=98.95  E-value=5.1e-09  Score=109.77  Aligned_cols=165  Identities=17%  Similarity=0.315  Sum_probs=124.7

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEe---CCCcEEEEEccCCcce-------
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN---ADSTVKVWDIVSGTKK-------  416 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~---~dg~i~iwd~~~~~~~-------  416 (635)
                      ..|+.+|+.+..+..||.+.+|... .++....+.|......+.|-+..+++++   .++.+.+||.......       
T Consensus      2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred             hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeec
Confidence            4588899999999999999999987 6667778889999999999888888775   4678999997544322       


Q ss_pred             ---eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEec
Q psy18018        417 ---LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       417 ---~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  493 (635)
                         .+...+.|..+.|++|+.+|.+++||++..+++++++.       +. ...++++|+..|.++||++.....+..+.
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence               22334678889999999999999999998888877765       22 46699999999999999999888777776


Q ss_pred             CCCccccc--EEEEEe---cCCEEEEEeCCCc
Q psy18018        494 GRNKHQSA--VTCLQF---NSRFVITSSDDGT  520 (635)
Q Consensus       494 ~~~~~~~~--v~~~~~---~~~~l~~~~~d~~  520 (635)
                      ....+.+-  ......   -.+.|.+++.||+
T Consensus      2408 ~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2408 SEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             hhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence            53322221  111111   1456777777763

>KOG2695|consensus

Probab=98.94  E-value=4.9e-09  Score=90.79  Aligned_cols=162  Identities=19%  Similarity=0.316  Sum_probs=114.8

Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCC-----ceeEEecCCCcccccE
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSG-----QCLQTLSGRNKHQSAV  502 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~v  502 (635)
                      ++.+.+..+-+-|+++|... .+. ..+.|.++.|  .++++..|+.+|.|..+|++..     .+...+.    |.+.|
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly----h~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY----HDSSV  301 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE----cCcch
Confidence            44455666777777766432 222 5566777776  4679999999999999999864     4455555    78888


Q ss_pred             EEEEe---cCCEEEEEeCCCcEEEEECCCCce---eeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        503 TCLQF---NSRFVITSSDDGTVKLWDVKTGEF---STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       503 ~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      +++..   ++++|++.+.+|+|++||.+.-+.   +....+|....         .-.-+.+.+....+++++.|...+|
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~---------a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS---------AYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc---------cccccccccccceEEEccCeeEEEE
Confidence            88776   789999999999999999987766   44444432111         1112234557788888999999999


Q ss_pred             EeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        577 WDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      |.+++|.++.++.... ......+++++|+.
T Consensus       373 Wsl~~ghLl~tipf~~-s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPFPY-SASEVDIPSVAFDS  402 (425)
T ss_pred             EecccCceeeccCCCC-ccccccccceehhc
Confidence            9999999998885322 23344677888754

>KOG0309|consensus

Probab=98.93  E-value=6e-09  Score=99.43  Aligned_cols=230  Identities=19%  Similarity=0.281  Sum_probs=154.5

Q ss_pred             CCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC---CCCceeeccCcceEEEEEE
Q psy18018         13 RPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI---KDPKVLKGHDDHVITCLQF   89 (635)
Q Consensus        13 ~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~---~~~~~l~~h~~~vi~~~~~   89 (635)
                      .|+.+++-|..-+-+-+.-+.+||+. .--.++++.+..        ..+ +|+....   +....+.||...+ +.+.|
T Consensus        54 ~p~~ppr~l~h~tpw~vad~qws~h~-a~~~wiVsts~q--------kai-iwnlA~ss~~aIef~lhghsrai-td~n~  122 (1081)
T KOG0309|consen   54 DPFTPPRWLHHITPWQVADVQWSPHP-AKPYWIVSTSNQ--------KAI-IWNLAKSSSNAIEFVLHGHSRAI-TDINF  122 (1081)
T ss_pred             CCCCCceeeeccCcchhcceecccCC-CCceeEEecCcc--------hhh-hhhhhcCCccceEEEEecCccce-ecccc
Confidence            46666666665555545678888662 222344444443        333 3886532   2234577998877 89999


Q ss_pred             c---CCEEEEeeCCCcEEEEECCCCcEE----------------------EEEeeCCCcEEEEeCCCC-eEEEEeeCCCc
Q psy18018         90 S---GSRIVSGSDDNTLKVWSATTGKCL----------------------LVSGSRDATLRVWHIESG-ECLHVLVGHLA  143 (635)
Q Consensus        90 s---~~~l~s~~~d~~v~vWd~~~~~~l----------------------l~~~~~dg~i~vwd~~~~-~~~~~l~~h~~  143 (635)
                      .   ...||+++.|-.|..||..+...-                      +.+.+....|.+||.+.+ .++..+++|..
T Consensus       123 ~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs  202 (1081)
T KOG0309|consen  123 NPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS  202 (1081)
T ss_pred             CCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce
Confidence            9   678999999999999998865442                      455566778999999876 67889999999


Q ss_pred             ceEEEEe---cCCEEEEEeCCCeEEEEeCCCccc--eeeccccceeEEeeeccCC-----------CEEEEEeCCCcEEE
Q psy18018        144 AVRCVQY---DGKLVVSGAYDYMVKIWNPDTEEC--LHAELQETEVELSHGYALR-----------SRIVSGSDDNTLKV  207 (635)
Q Consensus       144 ~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~dg~i~v  207 (635)
                      .|+.+.|   --..+.+++.||+|++||.+....  -+......++......+-+           +.+..-.-+..-..
T Consensus       203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             eeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence            9999999   456789999999999999875432  2222222222222222211           11111222333344


Q ss_pred             EECCC-CeEEEEEeCCCCCeEEEEee------------CCEEEEeeCceeEEEecccce
Q psy18018        208 WSATT-GKCLRTLIGHTGGVWSSQMA------------GNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       208 wd~~~-~~~~~~~~~h~~~v~~~~~~------------~~~l~s~~~dg~i~~w~~~~~  253 (635)
                      |+..+ .+++.++.||.+.|....|-            .-.|+|=+.|.++++|-+...
T Consensus       283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            55444 57889999999999877761            227999999999999988764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=2.7e-06  Score=84.07  Aligned_cols=91  Identities=15%  Similarity=0.086  Sum_probs=53.9

Q ss_pred             cEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEEeeeccCCCEEE
Q psy18018        123 TLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIV  197 (635)
Q Consensus       123 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (635)
                      .|.++|.+.++. +.+..+...+...+|  ||+.|+..+.+   ..|.+||+.+++.................+++++|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            488888875544 455567778888888  89998877644   468899998876433221111111223344555555


Q ss_pred             E-EeCCC--cEEEEECCCCe
Q psy18018        198 S-GSDDN--TLKVWSATTGK  214 (635)
Q Consensus       198 ~-~~~dg--~i~vwd~~~~~  214 (635)
                      . ...+|  .|++||+.+++
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             EEEccCCCceEEEEECCCCC
Confidence            3 33333  45555665543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.87  E-value=1.6e-05  Score=70.39  Aligned_cols=166  Identities=11%  Similarity=0.119  Sum_probs=101.1

Q ss_pred             EEEecCCEEEEEeC-CCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCC-ceeeee
Q psy18018        461 GMELRNNILVSGNA-DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTG-EFSTPL  535 (635)
Q Consensus       461 ~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~-~~~~~~  535 (635)
                      .+.+++++|++.+- -..|.+|++.+++....-.........-.-|.|  ++++..... -+++|.+|..... .....+
T Consensus       151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence            34557777777653 235999999977654432222123344556777  688776665 5899999999874 223333


Q ss_pred             ccceecCceeEEeccCceecccccCCCeEEEEecC-CCeEEEEeCCCC-ceEEeeeeccCCCCCceEEEEEeCCCCeEEE
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD-DGTVKLWDVKTG-EFIRNLVSLDSGGSGGVVWRIRASETKLVCA  613 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~  613 (635)
                      +.......-  ..-......+.++|||++|.++.. ...|.++.+... ..+.......  .+...-....|+++|++|+
T Consensus       231 Q~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~--teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         231 QTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP--TEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             eeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec--cCCcCCccceeCCCCCEEE
Confidence            221111110  112335667889999999997642 236888877543 3343333222  2333467889999999999


Q ss_pred             EccCCCeeEeEEEEEeee
Q psy18018        614 VGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       614 ~~~~dg~~~~~l~~~d~~  631 (635)
                      ++.+++.. +.+|..|.+
T Consensus       307 aa~q~sd~-i~vf~~d~~  323 (346)
T COG2706         307 AANQKSDN-ITVFERDKE  323 (346)
T ss_pred             EEccCCCc-EEEEEEcCC
Confidence            99999873 556655543

>KOG2314|consensus

Probab=98.87  E-value=3e-06  Score=78.85  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      +-+.||    |-|.||++-...         .+.+|-.++...++++. |.+ | .-+.||  .+||+|-+..-...=|+
T Consensus       214 tyv~wS----P~GTYL~t~Hk~---------GI~lWGG~~f~r~~RF~-Hp~-V-q~idfSP~EkYLVT~s~~p~~~~~~  277 (698)
T KOG2314|consen  214 TYVRWS----PKGTYLVTFHKQ---------GIALWGGESFDRIQRFY-HPG-V-QFIDFSPNEKYLVTYSPEPIIVEED  277 (698)
T ss_pred             eeEEec----CCceEEEEEecc---------ceeeecCccHHHHHhcc-CCC-c-eeeecCCccceEEEecCCccccCcc
Confidence            569999    899999998743         34469988888888775 554 4 779999  99999988765554454


Q ss_pred             CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCC--Ccc---eEEEEecCCEEEEEeCCCeEEEEeCCCcccee
Q psy18018        108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH--LAA---VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLH  176 (635)
Q Consensus       108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h--~~~---v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~  176 (635)
                      =..          ...++|||+.+|...+.+..-  ...   +..-++|++++|--.. .+|.|++...-.++.
T Consensus       278 d~e----------~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld  340 (698)
T KOG2314|consen  278 DNE----------GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD  340 (698)
T ss_pred             cCC----------CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence            222          235788888888888777652  222   2222338999988776 568899877655443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=1.5e-06  Score=84.61  Aligned_cols=190  Identities=13%  Similarity=0.105  Sum_probs=104.3

Q ss_pred             EEEeeCCcEEE---EEeCC--CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeC-CC----cEEEEECCCC-
Q psy18018        420 RICLFDGVHVV---SGSLD--TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA-DS----TVKVWDIVSG-  486 (635)
Q Consensus       420 ~~~~~~~~~l~---~~~~d--~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~-dg----~i~iwd~~~~-  486 (635)
                      ..++|||+.++   +...+  ..|.+.++.+++....  +.+... ...++++++.|+..+. +|    .+.+|++..+ 
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~  268 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA  268 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence            34667776422   33333  3577778876654322  222221 2345557776665442 22    3444676642 


Q ss_pred             --ceeEEecCCCcccccEE--EEEecCCEEEEEe-CCCcEEEEE--CCC-CceeeeeccceecCceeEEeccCceecccc
Q psy18018        487 --QCLQTLSGRNKHQSAVT--CLQFNSRFVITSS-DDGTVKLWD--VKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       487 --~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-~d~~i~vwd--~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                        +.......   ......  +.+.||+.|+..+ .+|...+|.  +.. +.....+.           .....+....|
T Consensus       269 ~g~~~~lt~~---~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----------~~~~~~~~p~w  334 (428)
T PRK01029        269 IGKPRRLLNE---AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----------KKYRNSSCPAW  334 (428)
T ss_pred             CCcceEeecC---CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-----------cCCCCccceeE
Confidence              32222222   111222  3444788777665 466555554  432 11111111           12335667889


Q ss_pred             cCCCeEEEEecCC---CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCCeeEeEEEEEeeec
Q psy18018        559 QFNSRFVITSSDD---GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNGTEETKLLVLDFDV  632 (635)
Q Consensus       559 s~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg~~~~~l~~~d~~~  632 (635)
                      ||||+.|+..+.+   ..|.+||+.+++... +.     .....+....|+|||++|+... .++.  ..||.+|++.
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt-----~~~~~~~~p~wSpDG~~L~f~~~~~g~--~~L~~vdl~~  404 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LT-----TSPENKESPSWAIDSLHLVYSAGNSNE--SELYLISLIT  404 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-cc-----CCCCCccceEECCCCCEEEEEECCCCC--ceEEEEECCC
Confidence            9999988876543   469999999887643 32     1223467789999999887544 3333  4688888754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2.3e-06  Score=83.38  Aligned_cols=224  Identities=15%  Similarity=0.092  Sum_probs=126.5

Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEeCC-----EEEEEeCCC--cEEEEEccCCcceeEE--------EEEeeCCc
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-----ILVSGNADS--TVKVWDIVSGTKKLMF--------RICLFDGV  427 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~s~~~dg--~i~iwd~~~~~~~~~~--------~~~~~~~~  427 (635)
                      ..|.+.|.+.++.. .+.........-.|+++     ++++...+|  .|.+.++.+++.....        ..++|||+
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            46777777655443 34444445566677643     233454444  4666677766543332        35899999


Q ss_pred             EEEEEeC-----CCcEEEEeCCCC---ceeeeeccCCccEE--EEEecCCEEEEEe-CCCcEEEE--ECCC-CceeEEec
Q psy18018        428 HVVSGSL-----DTSIRVWEAESG---NLRHTLMGHQSLTS--GMELRNNILVSGN-ADSTVKVW--DIVS-GQCLQTLS  493 (635)
Q Consensus       428 ~l~~~~~-----d~~i~~~d~~~~---~~~~~~~~~~~~v~--~~~~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~  493 (635)
                      .|+....     +..+..|++..+   +.......+.....  +++++++.|+..+ .+|...+|  ++.. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            9887653     223444676653   33333322222222  4455777666554 46655555  4432 22233343


Q ss_pred             CCCcccccEEEEEe--cCCEEEEEeCC---CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        494 GRNKHQSAVTCLQF--NSRFVITSSDD---GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       494 ~~~~~~~~v~~~~~--~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      .   ....+....|  ||+.|+..+.+   ..|.+||+.+++......            ....+....|+|||++|+..
T Consensus       324 ~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~------------~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        324 K---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT------------SPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             c---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC------------CCCCccceEECCCCCEEEEE
Confidence            2   2233344445  78888876543   469999999887532211            12245567899999988754


Q ss_pred             cC---CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        569 SD---DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       569 ~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      ..   ...|.++|+.+++.....      ...+.+...+|+|-
T Consensus       389 ~~~~g~~~L~~vdl~~g~~~~Lt------~~~g~~~~p~Ws~~  425 (428)
T PRK01029        389 AGNSNESELYLISLITKKTRKIV------IGSGEKRFPSWGAF  425 (428)
T ss_pred             ECCCCCceEEEEECCCCCEEEee------cCCCcccCceecCC
Confidence            32   357889999887754333      12334556677764

>KOG3914|consensus

Probab=98.81  E-value=1.3e-07  Score=84.06  Aligned_cols=164  Identities=18%  Similarity=0.255  Sum_probs=105.4

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      ...++.++.+|++..+....++++........+    ..+.++.-....+.....+.++.+.|                 
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl----~~~~~v~~~~~ai~~~~~~~sv~v~d-----------------  126 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKL----LDVSCVPKRPTAISFIREDTSVLVAD-----------------  126 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCccee----eeEeecccCcceeeeeeccceEEEEe-----------------
Confidence            346678888898888888777777644320000    01111111122222222222222211                 


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  504 (635)
                          ..+....+.+|....+ ....+-||-+.++.+.+  +++.++++..|..|++-.......+..+..  +|..-|..
T Consensus       127 ----kagD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~  199 (390)
T KOG3914|consen  127 ----KAGDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVST  199 (390)
T ss_pred             ----ecCCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheee
Confidence                1223344555555543 33445689998888877  567999999999999998876655555532  38888999


Q ss_pred             EEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018        505 LQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       505 ~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      ++. +++.|+++|.|+++++||+.+|+.+..+...
T Consensus       200 isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  200 ISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             eeeccCceeeecCCCCcEEEEecccCCcccccchh
Confidence            998 7788899999999999999999988776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=4e-06  Score=82.43  Aligned_cols=221  Identities=18%  Similarity=0.169  Sum_probs=127.8

Q ss_pred             eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe-CCC--cEEEEEccCCcceeE--------EEEEeeCCcEEE
Q psy18018        364 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN-ADS--TVKVWDIVSGTKKLM--------FRICLFDGVHVV  430 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~-~dg--~i~iwd~~~~~~~~~--------~~~~~~~~~~l~  430 (635)
                      .+.++|....+. +.+..+...+....|+  ++.++..+ .++  .|.+||+.+++....        ...++|||+.|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            567777654433 4455556677777886  55666543 333  588888877653222        235889999887


Q ss_pred             EE-eCCCc--EEEEeCCCCceeeeeccCCccEEEEE--ecCCEEEEEe-CCC--cEEEEECCCCceeEEecCCCcccccE
Q psy18018        431 SG-SLDTS--IRVWEAESGNLRHTLMGHQSLTSGME--LRNNILVSGN-ADS--TVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       431 ~~-~~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                      .. +.++.  |+++|+.+++.. .+..+........  ++++.++..+ .++  .|+++|+.+++... +.... ....-
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g-~~~~~  354 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG-EQNLG  354 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC-CCCcC
Confidence            64 55554  888898877654 3444443334444  4666665544 344  46667887776433 22111 11111


Q ss_pred             EEEEecCCEEEEEeCC-C--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-C--eEEE
Q psy18018        503 TCLQFNSRFVITSSDD-G--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-G--TVKL  576 (635)
Q Consensus       503 ~~~~~~~~~l~~~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~v~i  576 (635)
                      .+++.||++++..+.+ +  .|.++|+.+++... +..            ........|+|||++|+....+ +  .+.+
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------------~~~d~~ps~spdG~~I~~~~~~~g~~~l~~  421 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------------TRLDESPSVAPNGTMVIYSTTYQGKQVLAA  421 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------------CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            2344588888776543 3  45667877775422 111            0111234799999988776543 3  3777


Q ss_pred             EeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        577 WDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      ++. +|+....+.     .+.+.+...+|+|
T Consensus       422 ~~~-~G~~~~~l~-----~~~g~~~~p~Wsp  446 (448)
T PRK04792        422 VSI-DGRFKARLP-----AGQGEVKSPAWSP  446 (448)
T ss_pred             EEC-CCCceEECc-----CCCCCcCCCccCC
Confidence            786 566665562     3344566777876

>KOG4714|consensus

Probab=98.77  E-value=1.6e-07  Score=78.33  Aligned_cols=183  Identities=16%  Similarity=0.236  Sum_probs=112.9

Q ss_pred             eecCCCCCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEE-----------------------------
Q psy18018         65 WRTRPIKDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCL-----------------------------  114 (635)
Q Consensus        65 wd~~~~~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~l-----------------------------  114 (635)
                      |-..+. .+-.+.+|.+--++.+.|+ .-.|+++-.++.+......++.+.                             
T Consensus        21 ~~~~t~-~vD~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~   99 (319)
T KOG4714|consen   21 VGSSTP-LVDEIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM   99 (319)
T ss_pred             eeccCc-chhhcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc
Confidence            545555 5666677777556888888 666777777776666554443332                             


Q ss_pred             ----EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE-----EEe--cCCEEEEEe-----CCCeEEEEeCCCccceeec
Q psy18018        115 ----LVSGSRDATLRVWHIESGECLHVLVGHLAAVRC-----VQY--DGKLVVSGA-----YDYMVKIWNPDTEECLHAE  178 (635)
Q Consensus       115 ----l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~-----l~~--~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~  178 (635)
                          ++++..||.+.+++.+.   ...+ .|.-++..     .+.  .+..+.++.     .-+..+.|+++..+.+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~---~~~~-~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDK---DLAL-MSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             cCCceEecCCCceEEEEechH---HHhh-hhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence                88899999999988764   1111 11111111     111  333333322     1123445555443322221


Q ss_pred             ccc-ceeEEeeecc-CCCEEEEEeCCCcEEEEECCCCe-EEEEEeCCCCCeEEEEe---eCCEEEEeeCceeEEEecccc
Q psy18018        179 LQE-TEVELSHGYA-LRSRIVSGSDDNTLKVWSATTGK-CLRTLIGHTGGVWSSQM---AGNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       179 ~~~-~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~---~~~~l~s~~~dg~i~~w~~~~  252 (635)
                      ... ..+...+..+ ....+++|+.||.+.+||.+... +...+..|..+++.+-|   ++..|+++++||.+.-||..+
T Consensus       176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            111 2222222222 24678899999999999998763 34556889999999999   478999999999999999765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.76  E-value=3e-05  Score=73.74  Aligned_cols=199  Identities=16%  Similarity=0.209  Sum_probs=115.0

Q ss_pred             EeeCCcEEEEEeC----CCcEEEEeCCCC--ce--eeeeccCCccEEEEEe--cCCEEEEEe-CCCcEEEEECCC-Ccee
Q psy18018        422 CLFDGVHVVSGSL----DTSIRVWEAESG--NL--RHTLMGHQSLTSGMEL--RNNILVSGN-ADSTVKVWDIVS-GQCL  489 (635)
Q Consensus       422 ~~~~~~~l~~~~~----d~~i~~~d~~~~--~~--~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~-~~~~  489 (635)
                      +++++++|.+...    ++.|..|.+...  ++  +............+++  ++++|+++. .+|.+.++++.. +...
T Consensus        44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~  123 (345)
T PF10282_consen   44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG  123 (345)
T ss_dssp             E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred             EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence            4567777777766    467888877653  32  3333322233334554  677777765 589999999987 3333


Q ss_pred             EE---ec----CC---CcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCce-eeeeccceecCceeEEeccCceec
Q psy18018        490 QT---LS----GR---NKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEF-STPLMSSFILNPFYFLIYSQPLLC  555 (635)
Q Consensus       490 ~~---~~----~~---~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~  555 (635)
                      ..   +.    ++   ........++.+  +++++++.. ....|.+|++..... +.. ...      ........-..
T Consensus       124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~------~~~~~G~GPRh  196 (345)
T PF10282_consen  124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDS------IKVPPGSGPRH  196 (345)
T ss_dssp             EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEE------EECSTTSSEEE
T ss_pred             eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eec------cccccCCCCcE
Confidence            22   11    00   012233455666  678877764 345799999987652 211 110      01123456778


Q ss_pred             ccccCCCeEEEEec-CCCeEEEEeCC--CCc--eEEeeeeccCCCC-CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        556 PHLQFNSRFVITSS-DDGTVKLWDVK--TGE--FIRNLVSLDSGGS-GGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       556 ~~~s~~~~~l~~~~-~d~~v~iwd~~--~~~--~~~~~~~~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ++|+||++++.+.. .+++|.++++.  +++  .+..+........ ......++++|||++|.+......   .|.+|+
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~---sI~vf~  273 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN---SISVFD  273 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT---EEEEEE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC---EEEEEE
Confidence            99999999886654 57889999998  443  2333322222111 226889999999999888776543   245555


Q ss_pred             e
Q psy18018        630 F  630 (635)
Q Consensus       630 ~  630 (635)
                      +
T Consensus       274 ~  274 (345)
T PF10282_consen  274 L  274 (345)
T ss_dssp             E
T ss_pred             E
Confidence            5

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3914|consensus

Probab=98.76  E-value=1.3e-07  Score=84.05  Aligned_cols=152  Identities=16%  Similarity=0.214  Sum_probs=101.4

Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCce----eeeecc--CCccEEEEEecCC--EEEEEeCCCcEEEEECCCCceeEEec
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMG--HQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~--~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~  493 (635)
                      .++.++.++++..+....+++......    ......  ....+..+..+..  .....++...+.+|....+.+. .+.
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~l  148 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PIL  148 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhh
Confidence            346677777777777777776654332    222211  1122222222322  2233445566667776654433 333


Q ss_pred             CCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        494 GRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       494 ~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      +   |-..++.+++  |+++++++..|..|++-.....-.+..+.          ..|..-|..+++-++ ..|++++.|
T Consensus       149 G---hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----------lGH~eFVS~isl~~~-~~LlS~sGD  214 (390)
T KOG3914|consen  149 G---HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----------LGHKEFVSTISLTDN-YLLLSGSGD  214 (390)
T ss_pred             h---hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----------cccHhheeeeeeccC-ceeeecCCC
Confidence            4   8889999998  79999999999999998877655444443          347888888888754 458999999


Q ss_pred             CeEEEEeCCCCceEEee
Q psy18018        572 GTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       572 ~~v~iwd~~~~~~~~~~  588 (635)
                      +++++||+.+|+++.++
T Consensus       215 ~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CcEEEEecccCCccccc
Confidence            99999999999988665

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.73  E-value=2e-05  Score=72.06  Aligned_cols=168  Identities=14%  Similarity=0.111  Sum_probs=121.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE--ecCCEEEEEeCCC-cEEEEECCCCceeEEecCCCccccc
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME--LRNNILVSGNADS-TVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      +|.+++..+. |+..+.+...+-.++  .+|...|.-..  .+++-++.|..|| .+-|+|..+++..+...    .-+.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----~lg~  403 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----DLGN  403 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----Cccc
Confidence            6777777654 556666655554433  24555555433  3677889999999 89999998877544433    5567


Q ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC----eEE
Q psy18018        502 VTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG----TVK  575 (635)
Q Consensus       502 v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~v~  575 (635)
                      |.++..  +|++++.+.....+.+.|+.++.....-+.           -.+-|+..+|||+++++|-+--+|    .|+
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-----------ccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence            777777  789999999999999999999975433322           256789999999999999987776    689


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      ++|+..++....-.      ..+-=.+-+|.||+++|.--+
T Consensus       473 lydm~~~Kiy~vTT------~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         473 LYDMDGGKIYDVTT------PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEecCCCeEEEecC------CcccccCcccCCCCcEEEEEe
Confidence            99999888655442      233345678999999877554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=4.5e-07  Score=77.71  Aligned_cols=276  Identities=16%  Similarity=0.224  Sum_probs=155.3

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCCc-----eEEeeeCCC------------cceeEEEEe----CCEEEEE
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-----LRHTLMGHQ------------SLTSGMELR----NNILVSG  399 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~~~~------------~~v~~l~~~----~~~l~s~  399 (635)
                      ....+.+.|...|.++++|...|.|.+|.-....     ....+++|.            ..|..+.|-    ...++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3445556677789999999999999999755322     122355553            356666664    3467788


Q ss_pred             eCCCcEEEEEccCCcceeEEEE------EeeCCcEEEEEeCCCcEEEEeCCC------Cceeeee-ccCCccEEEEEecC
Q psy18018        400 NADSTVKVWDIVSGTKKLMFRI------CLFDGVHVVSGSLDTSIRVWEAES------GNLRHTL-MGHQSLTSGMELRN  466 (635)
Q Consensus       400 ~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~-~~~~~~v~~~~~~~  466 (635)
                      +.|.+|++|.+..........-      -+|-+.-+.+.   ..+++=.+..      .++.+.. ..|.-.+.+++++.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCH---HHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            8999999999876533222221      11111111000   0011000000      0111122 45777888999854


Q ss_pred             C-EEEEEeCCCcEEEEECCCCceeEEecCCCcc-----cccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018        467 N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH-----QSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       467 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      + ..+...+|-.|.+|++.-......+-...+|     ...|++..|.   ...+...+..|.|++-|++...+-.....
T Consensus       183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            3 3444456788999998643221111111112     2346666663   46677777889999999985432111100


Q ss_pred             ce--ecCce---eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC-CceEEeeeeccC-------CCCCceE---E
Q psy18018        538 SF--ILNPF---YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT-GEFIRNLVSLDS-------GGSGGVV---W  601 (635)
Q Consensus       538 ~~--~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~-------~~~~~~i---~  601 (635)
                      .+  ...++   ....--..|..+.|+++|+|+++-+. -+|+|||+.- ..++.++..++.       --....|   .
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence            00  00111   01112346778899999999997654 5799999874 445555532211       0112223   5


Q ss_pred             EEEeCCCCeEEEEccCCCe
Q psy18018        602 RIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       602 ~l~~s~d~~~l~~~~~dg~  620 (635)
                      .+.||.|...+++|+-+..
T Consensus       342 eisfSgd~~~v~sgsy~NN  360 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNN  360 (460)
T ss_pred             EEEecCCcccccccccccc
Confidence            6789999988888876654

>KOG1275|consensus

Probab=98.70  E-value=3.9e-07  Score=89.74  Aligned_cols=181  Identities=17%  Similarity=0.221  Sum_probs=130.4

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS  431 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~  431 (635)
                      ++..++.|+-...+..+|+++.+..+...-..+.+.-+.                                 .+++++.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR---------------------------------~Nnr~lf~  192 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR---------------------------------YNNRNLFC  192 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE---------------------------------ecCcEEEe
Confidence            455677777777788888887766555443333343333                                 34556777


Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeC---------CCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA---------DSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                      |...|+|.+-|..+.+.++++..|.+.+.++...|++|++++.         |.-|++||++..+.+..+..   +.++ 
T Consensus       193 G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-  268 (1118)
T KOG1275|consen  193 GDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-  268 (1118)
T ss_pred             ecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-
Confidence            7778888888888999999999999999999999999999985         45589999998887777765   3222 


Q ss_pred             EEEEec---CCEEEEEeCCCcEEEEECCCCce--eeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        503 TCLQFN---SRFVITSSDDGTVKLWDVKTGEF--STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       503 ~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      .-+.|.   ...+++++..|...+-|..+...  .....         .......+..+++|+++..||.|..+|.|.+|
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~---------v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w  339 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM---------VNPNGSGISAFDISSNGDALAFGDHEGHVNLW  339 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCCCccceeE---------EccCCCcceeEEecCCCceEEEecccCcEeee
Confidence            223342   56788888899999988332110  00000         11123458999999999999999999999999


Q ss_pred             e
Q psy18018        578 D  578 (635)
Q Consensus       578 d  578 (635)
                      .
T Consensus       340 a  340 (1118)
T KOG1275|consen  340 A  340 (1118)
T ss_pred             c
Confidence            7

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=1.6e-05  Score=76.92  Aligned_cols=191  Identities=12%  Similarity=0.116  Sum_probs=112.4

Q ss_pred             EEEEEeeCCcE-EEEEeC---CCcEEEEeCCCCceeeeeccCCccE--EEEEecCCEEE-EEeCC--CcEEEEECCCCce
Q psy18018        418 MFRICLFDGVH-VVSGSL---DTSIRVWEAESGNLRHTLMGHQSLT--SGMELRNNILV-SGNAD--STVKVWDIVSGQC  488 (635)
Q Consensus       418 ~~~~~~~~~~~-l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-s~~~d--g~i~iwd~~~~~~  488 (635)
                      ....++|||+. ++..+.   +..|+++|+.+++...... ..+..  ..++++++.++ +.+.+  ..|.++|+.+++.
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~  269 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL  269 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence            34556778774 444333   3468888998876654433 33332  34555676544 34333  4688888877764


Q ss_pred             eEEecCCCcccccEEEEEecCCEEEEEeC-CC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        489 LQTLSGRNKHQSAVTCLQFNSRFVITSSD-DG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       489 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                       ..+...... ..-...+.||+.|+..+. .+  .|++.|+.+++.......             +. ....|||||++|
T Consensus       270 -~~LT~~~~~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-------------g~-~~~~~SPDG~~I  333 (419)
T PRK04043        270 -TQITNYPGI-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-------------GK-NNSSVSTYKNYI  333 (419)
T ss_pred             -EEcccCCCc-cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-------------CC-cCceECCCCCEE
Confidence             344331111 111234447887776653 23  588888887765332211             11 124799999988


Q ss_pred             EEecCC---------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        566 ITSSDD---------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       566 ~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      +.....         ..|.+.|+.+++. ..+..   .+   ......|+|||+.|+....++. .-.|+.++++.+
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~---~~---~~~~p~~SPDG~~I~f~~~~~~-~~~L~~~~l~g~  402 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA---NG---VNQFPRFSSDGGSIMFIKYLGN-QSALGIIRLNYN  402 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC---CC---CcCCeEECCCCCEEEEEEccCC-cEEEEEEecCCC
Confidence            876543         3688889988875 34421   11   2235789999998887766543 245888877654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.67  E-value=3.8e-05  Score=83.19  Aligned_cols=238  Identities=14%  Similarity=0.155  Sum_probs=144.1

Q ss_pred             ceEEEEec-CcEEEEecCCCeEEEEEccCCceEEeeeC-C-------------CcceeEEEEe--CCEEEEEe-CCCcEE
Q psy18018        345 DLFGFQFD-GVHVVSGSLDTSIRVWEAESGNLRHTLMG-H-------------QSLTSGMELR--NNILVSGN-ADSTVK  406 (635)
Q Consensus       345 ~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~-------------~~~v~~l~~~--~~~l~s~~-~dg~i~  406 (635)
                      .-++++++ +..+++-..++.|+++|.. +..+..+.+ .             -.....++++  ++.|+.+. ....|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            34678774 5566676778899999976 444443332 1             1134677776  45555554 456788


Q ss_pred             EEEccCCccee-------------------------EEEEEee-CCcEEEEEeCCCcEEEEeCCCCceeeeecc------
Q psy18018        407 VWDIVSGTKKL-------------------------MFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMG------  454 (635)
Q Consensus       407 iwd~~~~~~~~-------------------------~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------  454 (635)
                      .+|+.++....                         .-..+++ ++..+++...++.|++||..++... .+.+      
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence            88875543211                         1123556 4556666677899999998876542 2211      


Q ss_pred             ---CC------ccEEEEEe--cCC-EEEEEeCCCcEEEEECCCCceeEEecCC----------C--------cccccEEE
Q psy18018        455 ---HQ------SLTSGMEL--RNN-ILVSGNADSTVKVWDIVSGQCLQTLSGR----------N--------KHQSAVTC  504 (635)
Q Consensus       455 ---~~------~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~--------~~~~~v~~  504 (635)
                         +.      ....++++  +++ ++++-+.++.|++||+.++.......+.          .        ..-.....
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence               11      12234555  455 5666677799999999876532111000          0        00011235


Q ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCceeeeecccee--cCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        505 LQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI--LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       505 ~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +++  +|+++++-+.++.|++||..++...........  ..-......-.....++++++|+++++-+.++.|++||+.
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            555  578888888899999999988765533221100  0000001112346788999999999988899999999999


Q ss_pred             CCce
Q psy18018        581 TGEF  584 (635)
Q Consensus       581 ~~~~  584 (635)
                      +++.
T Consensus       889 ~~~~  892 (1057)
T PLN02919        889 KGEA  892 (1057)
T ss_pred             CCcc
Confidence            8875

>KOG4714|consensus

Probab=98.65  E-value=7e-07  Score=74.63  Aligned_cols=125  Identities=14%  Similarity=0.219  Sum_probs=87.4

Q ss_pred             CceEEEEe-cCcEEEEecCCCeEEEEEccCCce-EEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        344 PDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       344 ~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ...++-+| +...+++|+.||.+-+||.+.... ...++.|+.++..+.|.   ++.|++++.||.+-.||..+      
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~------  255 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST------  255 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC------
Confidence            34455566 456788999999999999987643 45578899999999996   67999999999999999765      


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCC---C--ceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEE
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAES---G--NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD  482 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~---~--~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd  482 (635)
                              ..|..+.....+..|=-..   .  +.-..+......|+.+...+..|++|++-+.|++++
T Consensus       256 --------~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  256 --------TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             --------ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence                    2333333333444452111   0  011112233446778888899999999999999875

>KOG4532|consensus

Probab=98.64  E-value=4.1e-06  Score=70.51  Aligned_cols=175  Identities=13%  Similarity=0.039  Sum_probs=116.8

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCce-eeeeccCCccEEEEE---ecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccc
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS  500 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  500 (635)
                      ...+|+.|+..|...+|...+.+. .+....|...|+-..   -..-.+..++.|.++++.++.-+.....+..   ..-
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~~~  159 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---QNL  159 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---ccc
Confidence            445789999999999999986543 334444544333221   1233566778888888888875543333322   112


Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      .+.++++  |++++++.++...|..|.+........-        .+....+..-.+..|+.....+|++..||++.|||
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~--------~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN--------IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD  231 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee--------eEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence            2555555  7999999999999999998765322111        11111244456678899999999999999999999


Q ss_pred             CCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018        579 VKTGEFIRNLVSLDSGGSGGVVWRIRASETKL  610 (635)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  610 (635)
                      ++..........-..+.|.+.+..+.|++-|.
T Consensus       232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             ecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            98755443333223346899999999998664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=4.4e-05  Score=67.79  Aligned_cols=201  Identities=14%  Similarity=0.174  Sum_probs=116.9

Q ss_pred             EEeeCCcEEEEEeC---CCcEEEEeCCC--Cceee----eeccCCccEEEEEecCCEEEEEe-CCCcEEEEECCC-Ccee
Q psy18018        421 ICLFDGVHVVSGSL---DTSIRVWEAES--GNLRH----TLMGHQSLTSGMELRNNILVSGN-ADSTVKVWDIVS-GQCL  489 (635)
Q Consensus       421 ~~~~~~~~l~~~~~---d~~i~~~d~~~--~~~~~----~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~  489 (635)
                      .+.+++++|.++..   +|.|..|.++.  |++..    .+.++...-.+++-++++++++. .-|.|.++-+++ |.+.
T Consensus        46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~  125 (346)
T COG2706          46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ  125 (346)
T ss_pred             EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccc
Confidence            35566666666644   35666666654  44321    12222222223444677777765 458899999865 3322


Q ss_pred             EEecCCCccccc----------EEEEE--ecCCEEEEEeC-CCcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        490 QTLSGRNKHQSA----------VTCLQ--FNSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       490 ~~~~~~~~~~~~----------v~~~~--~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      ..... ..|...          +-+..  +++++|++.+- --.|.+|++..|.+...-....        .-...-..|
T Consensus       126 ~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--------~~G~GPRHi  196 (346)
T COG2706         126 PVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--------KPGAGPRHI  196 (346)
T ss_pred             cceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--------CCCCCcceE
Confidence            21110 012211          33333  37888888763 2359999999776543322211        124566789


Q ss_pred             cccCCCeEEEEec-CCCeEEEEeCCCC-ceEEeee---eccC-CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        557 HLQFNSRFVITSS-DDGTVKLWDVKTG-EFIRNLV---SLDS-GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       557 ~~s~~~~~l~~~~-~d~~v~iwd~~~~-~~~~~~~---~~~~-~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      .|+|++++..+.. -+++|.+|..... ..+..++   .++. -.......++..++||++|.++..--. +  |+.+-.
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d-s--I~~f~V  273 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD-S--IAVFSV  273 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC-e--EEEEEE
Confidence            9999999887766 4789999998873 2233332   2221 122456788999999999998766443 3  444444


Q ss_pred             ecC
Q psy18018        631 DVD  633 (635)
Q Consensus       631 ~~~  633 (635)
                      +++
T Consensus       274 ~~~  276 (346)
T COG2706         274 DPD  276 (346)
T ss_pred             cCC
Confidence            444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.60  E-value=7.4e-05  Score=81.02  Aligned_cols=237  Identities=14%  Similarity=0.119  Sum_probs=137.3

Q ss_pred             EEEEe---CCEEEEEeCCCcEEEEEccCCccee----------------------EEEEEeeCCcEEEEEe-CCCcEEEE
Q psy18018        388 GMELR---NNILVSGNADSTVKVWDIVSGTKKL----------------------MFRICLFDGVHVVSGS-LDTSIRVW  441 (635)
Q Consensus       388 ~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~----------------------~~~~~~~~~~~l~~~~-~d~~i~~~  441 (635)
                      .++++   +.++++-..++.|+++|........                      .-..+.++++.|+++. .++.|+.+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i  651 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI  651 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence            45564   3466666777889999875432111                      1112445666665554 45678999


Q ss_pred             eCCCCceeeeeccC-----------------CccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCC------
Q psy18018        442 EAESGNLRHTLMGH-----------------QSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGR------  495 (635)
Q Consensus       442 d~~~~~~~~~~~~~-----------------~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------  495 (635)
                      |..++.. .++.+-                 -..-..++++   +.++++...++.|++||..++... .+.+.      
T Consensus       652 d~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~  729 (1057)
T PLN02919        652 DFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL  729 (1057)
T ss_pred             ecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence            9876543 333210                 0112345554   346677778899999998876543 22110      


Q ss_pred             Cc------ccccEEEEEe--cCC-EEEEEeCCCcEEEEECCCCceeeeecccee--cCceeE--------EeccCceecc
Q psy18018        496 NK------HQSAVTCLQF--NSR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFI--LNPFYF--------LIYSQPLLCP  556 (635)
Q Consensus       496 ~~------~~~~v~~~~~--~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~v~~~  556 (635)
                      ..      .-.....+++  +++ ++++-+.++.|++||+.++...........  ......        ...-.....+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence            00      0112344666  566 555666779999999987763221110000  000000        0011123578


Q ss_pred             cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC---------CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        557 HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS---------GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       557 ~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---------~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      +++++|+++++-..++.|++||..++....... ...         .+.-.....|+++++|+++++.+.++.    |..
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~----Irv  884 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL----IRY  884 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE----EEE
Confidence            999999998888899999999998877653321 100         011235678999999998888888886    555


Q ss_pred             Eeee
Q psy18018        628 LDFD  631 (635)
Q Consensus       628 ~d~~  631 (635)
                      +|.+
T Consensus       885 id~~  888 (1057)
T PLN02919        885 LDLN  888 (1057)
T ss_pred             EECC
Confidence            5554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1.9e-07  Score=55.86  Aligned_cols=37  Identities=27%  Similarity=0.849  Sum_probs=34.7

Q ss_pred             CeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEe
Q psy18018        132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN  168 (635)
Q Consensus       132 ~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd  168 (635)
                      ++++.++.+|.++|++++|  ++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3678999999999999999  889999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695|consensus

Probab=98.57  E-value=5.2e-07  Score=78.61  Aligned_cols=137  Identities=15%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             EEEeCCCcEEEEEccCCcceeEEE-------EEeeCCcEEEEEeCCCcEEEEeCCCC-----ceeeeeccCCccEEEEE-
Q psy18018        397 VSGNADSTVKVWDIVSGTKKLMFR-------ICLFDGVHVVSGSLDTSIRVWEAESG-----NLRHTLMGHQSLTSGME-  463 (635)
Q Consensus       397 ~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~-  463 (635)
                      ++.+.+..+.+-|++++.......       .|...++.+..|..+|.|..+|++.+     .+.+. --|.+.|+++. 
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhh
Confidence            444555555566665554322221       12334566777777777777777654     22333 34888888876 


Q ss_pred             --ecCCEEEEEeCCCcEEEEECCCCce---eEEecCCCcccccEEEEEe----cCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018        464 --LRNNILVSGNADSTVKVWDIVSGQC---LQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       464 --~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~  534 (635)
                        +++.+|.+.+-+|+|++||++.-++   +..+.+   |...-.-+.+    ....++++++|...|+|.++.+.++.+
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG---HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG---HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeec---ccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence              4788999999999999999987777   677766   5443333333    467888899999999999999998887


Q ss_pred             ecc
Q psy18018        535 LMS  537 (635)
Q Consensus       535 ~~~  537 (635)
                      ++.
T Consensus       384 ipf  386 (425)
T KOG2695|consen  384 IPF  386 (425)
T ss_pred             cCC
Confidence            764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=1.1e-07  Score=56.83  Aligned_cols=36  Identities=33%  Similarity=0.750  Sum_probs=33.5

Q ss_pred             CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      ++++++++|.+.| ++++|+  +++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i-~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSI-NSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSE-EEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcE-EEEEEecccccceeeCCCCEEEEEC
Confidence            5678899999998 999999  89999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.56  E-value=0.0005  Score=68.83  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             CCcEEEEeCCCCceeeeeccCCccEE-EEEecCCEEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                      -+.+.-+|+.+++...+......... .+...+.+++.++.||.++.+|.++|+.+.+.+.
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            46788999999998887654322111 2344677888888899999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.55  E-value=0.0011  Score=66.42  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             EEecCCEEEEEeCCCeEEEEeCCCccceeecccccee----EEeeeccCCCEEEEEeC------CCcEEEEECCCCeEEE
Q psy18018        148 VQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEV----ELSHGYALRSRIVSGSD------DNTLKVWSATTGKCLR  217 (635)
Q Consensus       148 l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~  217 (635)
                      +++.+..++.++.|+.+.-.|..+|+.+.+.......    ........+++++++..      +|.|..+|.++|+.+.
T Consensus       116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             ceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence            3455667888889999999999999988765432110    11111112556777653      6889999999999887


Q ss_pred             EEe
Q psy18018        218 TLI  220 (635)
Q Consensus       218 ~~~  220 (635)
                      .+.
T Consensus       196 ~~~  198 (527)
T TIGR03075       196 RRY  198 (527)
T ss_pred             ecc
Confidence            764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0882|consensus

Probab=98.54  E-value=6.2e-06  Score=74.78  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=158.1

Q ss_pred             CCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEE------------EEeeCCcEEEEEeC-CCcEEEEeCCCC
Q psy18018        381 GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFR------------ICLFDGVHVVSGSL-DTSIRVWEAESG  446 (635)
Q Consensus       381 ~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~l~~~~~-d~~i~~~d~~~~  446 (635)
                      .|...|+-+... .+++.+++-||.++.|.-..-.......            ..+.++..+.+.+. |..++++|+++-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            466777766665 7899999999999999765422211111            24567888888676 999999998875


Q ss_pred             ceeeeec--cCCccEEEEEecCC----EEEEEeCCCcEEEEECCCCce-eEEecCCCcccccEEEEEec--CCEEEEEeC
Q psy18018        447 NLRHTLM--GHQSLTSGMELRNN----ILVSGNADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQFN--SRFVITSSD  517 (635)
Q Consensus       447 ~~~~~~~--~~~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  517 (635)
                      ..+.-++  --.+.+..+.-.++    +-++.-.++.+.++|-....+ ..-+.  .-|..+|.++.++  +..+++...
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEeeccccceeeccc
Confidence            5443222  22333333333332    334445678999999764432 22222  2388999999984  778888888


Q ss_pred             CCcEEEEECCC-Cceeee-e--ccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC
Q psy18018        518 DGTVKLWDVKT-GEFSTP-L--MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS  593 (635)
Q Consensus       518 d~~i~vwd~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  593 (635)
                      .|.|.-|..+. .+.... +  .......-..........+++.|+|++..+.+-+.|..|+++++++|+.++.+.....
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t  244 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT  244 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence            89999999873 111111 0  0001111122223355678999999999999999999999999999987765542211


Q ss_pred             C----------------------------CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        594 G----------------------------GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       594 ~----------------------------~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      .                            .....-+...|...|.+|+-++-=|   +++..++-
T Consensus       245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g---ikvin~~t  306 (558)
T KOG0882|consen  245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG---IKVINLDT  306 (558)
T ss_pred             hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee---EEEEEeec
Confidence            0                            1122345677889999999988866   56666653

>KOG2066|consensus

Probab=98.52  E-value=2.5e-06  Score=83.24  Aligned_cols=183  Identities=17%  Similarity=0.151  Sum_probs=117.4

Q ss_pred             ceeEEEEeCCEEEEEeCCCcEEEEEccCCc-ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE
Q psy18018        385 LTSGMELRNNILVSGNADSTVKVWDIVSGT-KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  463 (635)
Q Consensus       385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  463 (635)
                      .+.+.+++..+++-|+-+|.+++.+.+..- ..........+|.++++++.||++.+..+-+.+...++. ...++.+++
T Consensus        41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia  119 (846)
T KOG2066|consen   41 AISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA  119 (846)
T ss_pred             HHHHHHhhcceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence            445555566666666666666666655432 111111123468888888888888888877776665554 344566677


Q ss_pred             ecCC-------EEEEEeCCCcEEEEECCCCceeE--EecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018        464 LRNN-------ILVSGNADSTVKVWDIVSGQCLQ--TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       464 ~~~~-------~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  534 (635)
                      ++++       .+++|+.-| +.++.-.=.....  .+..   ..++|.++.|.|+++|-++.+| |+|||+.+++.+..
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~---~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~  194 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE---GEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTN  194 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec---CccceEEEEecCcEEEEecCCC-cEEEeccccceeec
Confidence            6543       789999988 7777643211111  2332   6789999999999999999888 99999999988877


Q ss_pred             eccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +.......  .   -..---.+.|.++.++++ |-.| +|+|..++
T Consensus       195 i~~p~~~~--R---~e~fpphl~W~~~~~LVI-GW~d-~v~i~~I~  233 (846)
T KOG2066|consen  195 IPPPSQSV--R---PELFPPHLHWQDEDRLVI-GWGD-SVKICSIK  233 (846)
T ss_pred             cCCCCCCC--C---cccCCCceEecCCCeEEE-ecCC-eEEEEEEe
Confidence            76543111  0   011123466776665554 4433 58888887

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.51  E-value=9.3e-05  Score=63.71  Aligned_cols=176  Identities=11%  Similarity=0.100  Sum_probs=111.8

Q ss_pred             ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-------CccEEEEEec--------CCEEEEEeCCCcEE
Q psy18018        415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-------QSLTSGMELR--------NNILVSGNADSTVK  479 (635)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~~--------~~~l~s~~~dg~i~  479 (635)
                      +......++||+..|+.+...|+|++||+.... +..+...       ...|.+|.|-        ...|++-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            334445689999999999999999999997533 3333321       2355566551        12566777788887


Q ss_pred             EEECCC-----CceeEEecCCCcccccEEEEEec--CCEEEEEeC-CC----------cEEEEECCCCceeeeeccceec
Q psy18018        480 VWDIVS-----GQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSD-DG----------TVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       480 iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~----------~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      -|-+..     .+....+.....+...|.++.++  -++|+.|+. ..          -+..|.+-++............
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            776532     23344444434456789999995  355555542 21          2677777655433221111100


Q ss_pred             --------------CceeE----EeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec
Q psy18018        542 --------------NPFYF----LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL  591 (635)
Q Consensus       542 --------------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  591 (635)
                                    .....    ......|..|.+||||.+||+...+|.|.+|++.+-++++.+..-
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence                          00001    113557899999999999999999999999999998888777543

>KOG1645|consensus

Probab=98.37  E-value=6.9e-05  Score=67.29  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=81.8

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeec--------cceeeeeeecCCCCCCceeeccCcceEEEEEEc---CCEEEEee
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMS--------HRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGS   98 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~--------~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~   98 (635)
                      .++.+.    +..++|+.+...-.+...        .+-.+...+..+++....+.+|...+ +.++||   ..+|..++
T Consensus       139 f~v~r~----~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~I-rdlafSp~~~GLl~~as  213 (463)
T KOG1645|consen  139 FSVGRN----AGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFI-RDLAFSPFNEGLLGLAS  213 (463)
T ss_pred             eeeeec----CCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhh-hhhccCccccceeeeec
Confidence            455555    666666654433222211        11234557778888888888887777 999999   33577777


Q ss_pred             CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCcc
Q psy18018         99 DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEE  173 (635)
Q Consensus        99 ~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~  173 (635)
                      .++.|+|.|++                     +...+..+..| .++++++|   +.+.+..|...|.|.+||+...+
T Consensus       214 l~nkiki~dle---------------------t~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  214 LGNKIKIMDLE---------------------TSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             cCceEEEEecc---------------------cceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            77777777665                     45556666677 78999999   56788999999999999998755

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.35  E-value=0.0019  Score=58.32  Aligned_cols=218  Identities=11%  Similarity=0.043  Sum_probs=120.3

Q ss_pred             EEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        347 FGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       347 ~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                      ..|.+ ++.++++-...+.|..|+..++.... +....  ...+++.                               .+
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~-------------------------------~~   50 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFD-------------------------------RP   50 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEE-------------------------------CT
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEE-------------------------------cc
Confidence            34666 66666676678888888887665432 22211  3334433                               01


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceeeeecc-----CCccEEEEEe--cCCEEEEEeCC--------CcEEEEECCCCceeE
Q psy18018        426 GVHVVSGSLDTSIRVWEAESGNLRHTLMG-----HQSLTSGMEL--RNNILVSGNAD--------STVKVWDIVSGQCLQ  490 (635)
Q Consensus       426 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~--~~~~l~s~~~d--------g~i~iwd~~~~~~~~  490 (635)
                      +..++.+...+ +.++|..+++.......     .....+.+.+  ++++.++....        |.+..++.. ++...
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            12233333322 33345555543322221     2234555555  45555555433        557777766 44433


Q ss_pred             EecCCCcccccEEEEEe--cCCEEE-EEeCCCcEEEEECCCCce-eeeeccceecCceeEEeccCceecccccCCCeEEE
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKTGEF-STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI  566 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  566 (635)
                      ...    .......+++  +++.|+ +-+..+.|..+++..... +.....-.....     .....-.+++..+|++.+
T Consensus       129 ~~~----~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~g~pDG~~vD~~G~l~v  199 (246)
T PF08450_consen  129 VAD----GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----GPGYPDGLAVDSDGNLWV  199 (246)
T ss_dssp             EEE----EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----SSCEEEEEEEBTTS-EEE
T ss_pred             Eec----CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----CCcCCCcceEcCCCCEEE
Confidence            333    2334566777  577654 666778899999864332 111110000000     012356788999999988


Q ss_pred             EecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe-CCCCeEEEEc
Q psy18018        567 TSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA-SETKLVCAVG  615 (635)
Q Consensus       567 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~d~~~l~~~  615 (635)
                      +....+.|.++|.+ |+.+..+..     ....+++++| -++...|.+.
T Consensus       200 a~~~~~~I~~~~p~-G~~~~~i~~-----p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  200 ADWGGGRIVVFDPD-GKLLREIEL-----PVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEETTTEEEEEETT-SCEEEEEE------SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEcCCCEEEEECCC-ccEEEEEcC-----CCCCEEEEEEECCCCCEEEEE
Confidence            88788999999977 998888742     2347899999 4665655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=98.28  E-value=0.0082  Score=62.49  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEE---------------eeeccCCCEEEEEeC----------CCcE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL---------------SHGYALRSRIVSGSD----------DNTL  205 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~----------dg~i  205 (635)
                      .+.+++.++.|+.+.-.|.++|+.+..+.....+..               ....-.++.+++|+.          +|.|
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            345888899999999999999998876543322211               111112567777753          6889


Q ss_pred             EEEECCCCeEEEEEe
Q psy18018        206 KVWSATTGKCLRTLI  220 (635)
Q Consensus       206 ~vwd~~~~~~~~~~~  220 (635)
                      +-+|..+|+.+..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2066|consensus

Probab=98.27  E-value=4e-05  Score=75.18  Aligned_cols=167  Identities=13%  Similarity=0.151  Sum_probs=118.4

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEE
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  503 (635)
                      ..+++++.|+.+|.+++++... .+ .+...|...    ..+|.++++++.||+|.|-.+-+.+....+.    ...++.
T Consensus        47 v~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpik  116 (846)
T KOG2066|consen   47 VHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIK  116 (846)
T ss_pred             hhcceeeeccccceEEEEecCC-cc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe----cCCcce
Confidence            3577899999999999998763 33 344444443    5578999999999999999998888777666    456777


Q ss_pred             EEEec-------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        504 CLQFN-------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       504 ~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      +++++       .+.+++|+..| +.++.-+-......         +....-.++|.++.|  .|.++|-++++| |+|
T Consensus       117 sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~---------v~l~~~eG~I~~i~W--~g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  117 SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS---------VVLSEGEGPIHSIKW--RGNLIAWANDDG-VKV  183 (846)
T ss_pred             eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc---------eeeecCccceEEEEe--cCcEEEEecCCC-cEE
Confidence            88874       46899999888 77776432221111         122234678888888  789999998888 999


Q ss_pred             EeCCCCceEEeeeeccCC-CCCceEEEEEeCCCCeEEE
Q psy18018        577 WDVKTGEFIRNLVSLDSG-GSGGVVWRIRASETKLVCA  613 (635)
Q Consensus       577 wd~~~~~~~~~~~~~~~~-~~~~~i~~l~~s~d~~~l~  613 (635)
                      ||+.+++.+..+...... ....--..+.|.++.++++
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            999999988877532211 1122345677877666544

>KOG1645|consensus

Probab=98.27  E-value=0.00025  Score=63.86  Aligned_cols=131  Identities=15%  Similarity=0.233  Sum_probs=79.0

Q ss_pred             cCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEE
Q psy18018         79 HDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVS  157 (635)
Q Consensus        79 h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s  157 (635)
                      |.... .++.++ |.+|.-.++.-.+-+-.-..++. ++.|-  | +++.+..+.+....+.+|...|..++|..     
T Consensus       134 h~qk~-f~v~r~~gcrli~y~~~~s~lv~sQks~qa-~lpGv--G-v~~l~~~~fkssq~lp~~g~~IrdlafSp-----  203 (463)
T KOG1645|consen  134 HKQKS-FSVGRNAGCRLIGYDESSSTLVVSQKSGQA-LLPGV--G-VQKLESHDFKSSQILPGEGSFIRDLAFSP-----  203 (463)
T ss_pred             hcccc-eeeeecCCceEEecccccceeeeeccchhh-cCCcc--c-eEEeccCCcchhhcccccchhhhhhccCc-----
Confidence            44444 577777 66666665544333333222322 22221  2 44555444455555556666666666610     


Q ss_pred             EeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee---CC
Q psy18018        158 GAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA---GN  234 (635)
Q Consensus       158 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~  234 (635)
                                                       ...+++..++.+..|++.|+++...+..+..| ..+++.+|+   .+
T Consensus       204 ---------------------------------~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  204 ---------------------------------FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH  249 (463)
T ss_pred             ---------------------------------cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcc
Confidence                                             00224555566667777777777777777777 788999995   67


Q ss_pred             EEEEeeCceeEEEecccce
Q psy18018        235 IIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       235 ~l~s~~~dg~i~~w~~~~~  253 (635)
                      ++..|-..|.|.+||++..
T Consensus       250 ~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eeEEeccCceEEEEEccCC
Confidence            8889999999999998764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.25  E-value=0.0034  Score=56.91  Aligned_cols=188  Identities=12%  Similarity=0.114  Sum_probs=112.2

Q ss_pred             CceEEEEecCcEEEEec--CCCeEEEEEccCCceEEeeeCCCcceeEEE-EeCCEEEEEeCCCcEEEEEccC-CcceeEE
Q psy18018        344 PDLFGFQFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGME-LRNNILVSGNADSTVKVWDIVS-GTKKLMF  419 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~-~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~  419 (635)
                      ....+++.|++++++..  -...|.|.|+..++.+.++.-..  +..+- ..++.+.+.+.||.+.-..+.. ++.....
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            34456888888877654  34678999999888877765422  22222 2367889999999999998874 3333222


Q ss_pred             -EEEe-------------eCCcEEEEEeCCCcEEEEeCCCCcee--eeecc------------CCccEEEEEecCCEEEE
Q psy18018        420 -RICL-------------FDGVHVVSGSLDTSIRVWEAESGNLR--HTLMG------------HQSLTSGMELRNNILVS  471 (635)
Q Consensus       420 -~~~~-------------~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~------------~~~~v~~~~~~~~~l~s  471 (635)
                       ..|.             ..+..++..+.+|.|+-.|+......  ..+..            ..-.+.++....+.|.+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence             2222             23445666788888888888755421  11211            00122333333333333


Q ss_pred             Ee---CCC-------cEEEEECCCCceeEEecCCCcccccEEEEEe--c-CCEEEEE-eCCCcEEEEECCCCceeeeecc
Q psy18018        472 GN---ADS-------TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N-SRFVITS-SDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       472 ~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      --   .++       .|-++|+.+++.+..+..    ..++.+++.  + ..+|++. ..++.+.+||..+|+.+..+..
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            21   122       377789999999999874    344656666  3 4466554 4689999999999998887764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.24  E-value=0.00071  Score=58.47  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  383 (635)
                      ..--+.+||||+.|++...+|.|.+|++.+-++...+..++
T Consensus       231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             ceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            33446799999999999999999999999877766665443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.20  E-value=0.0028  Score=56.69  Aligned_cols=185  Identities=15%  Similarity=0.144  Sum_probs=106.2

Q ss_pred             EEeeCCcEEEEEeC-----CCcEEEEeCC-CCceeeeeccCCccEEEE--EecCCEEEEEe------------------C
Q psy18018        421 ICLFDGVHVVSGSL-----DTSIRVWEAE-SGNLRHTLMGHQSLTSGM--ELRNNILVSGN------------------A  474 (635)
Q Consensus       421 ~~~~~~~~l~~~~~-----d~~i~~~d~~-~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~------------------~  474 (635)
                      +|++||++|++.-.     .|.|-+||.. +.+.+.++..|.-.-..+  ..+++.|+++.                  -
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            46777887777643     4789999998 556677776654333333  33565555543                  1


Q ss_pred             CCcEEEEECCCCceeEEecCC-CcccccEEEEEec--CCEEEEEeCCCc-------EEEEECCCCceeeeeccceecCce
Q psy18018        475 DSTVKVWDIVSGQCLQTLSGR-NKHQSAVTCLQFN--SRFVITSSDDGT-------VKLWDVKTGEFSTPLMSSFILNPF  544 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~d~~-------i~vwd~~~~~~~~~~~~~~~~~~~  544 (635)
                      +-.+...|..+|+.+.+...+ ..|...|.-++++  |..++..-..|.       +-+++...  ....+...    ..
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p----~~  210 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAP----EE  210 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCC----hH
Confidence            234566677788877764431 2366677777773  333332222221       22222211  11111110    00


Q ss_pred             eEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      .......-+-++++++++.++++.+ ..+.+.+||..+++.+....       -.-+-.++-.+++ ++++.+...
T Consensus       211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-------l~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-------LPDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-------cCceeeeeecCCc-eEEeCCCcc
Confidence            0112345788999999998776555 67899999999999987773       2235566666766 555555433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.19  E-value=0.00043  Score=67.95  Aligned_cols=149  Identities=11%  Similarity=-0.034  Sum_probs=84.8

Q ss_pred             cCCEEEEEeCCCcEEEEECCC-----CceeEEecCCCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCceeeeeccc
Q psy18018        465 RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      ++++...  .++.|.+.|..+     .+.+..+.... ....+ .++.||+++++++ .+.++.|.|+.+.+..-.-...
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV-~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGV-NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-Cccce-EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            4555444  367899999987     45555555311 11112 2556888877666 4899999999875531000000


Q ss_pred             eecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC----------CceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT----------GEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      ....-.....-...-...+|.++|....+-.-|..|..|++.+          ...+..+...-..+|......=.-.||
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~d  442 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEAD  442 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCC
Confidence            0000000001122334567899998888888999999999986          334444432222233332223334789


Q ss_pred             CeEEEEccC
Q psy18018        609 KLVCAVGSR  617 (635)
Q Consensus       609 ~~~l~~~~~  617 (635)
                      |++|++...
T Consensus       443 gk~l~~~nk  451 (635)
T PRK02888        443 GKWLVSLNK  451 (635)
T ss_pred             CCEEEEccc
Confidence            999988754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.00077  Score=65.45  Aligned_cols=186  Identities=9%  Similarity=0.070  Sum_probs=103.0

Q ss_pred             EEEEecCcE-EEEecC---CCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        347 FGFQFDGVH-VVSGSL---DTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       347 ~~~s~~~~~-l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      ..|+|||+. ++..+.   +..|.++|+.+++...... ..+......|                               
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~-------------------------------  240 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDV-------------------------------  240 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEE-------------------------------
Confidence            468999985 554333   3568888888776543322 2222222223                               


Q ss_pred             eeCCcEEEEEe---CCCcEEEEeCCCCceeeeeccCCc--cEEEEEecCCEEEEEe-CCC--cEEEEECCCCceeEEecC
Q psy18018        423 LFDGVHVVSGS---LDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGN-ADS--TVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       423 ~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~  494 (635)
                      +|||+.++...   .+..|.++|+.+++.. .+..+..  .-..++++++.++-.+ ..+  .|++.|+.+++..+....
T Consensus       241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~  319 (419)
T PRK04043        241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH  319 (419)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence            35554444322   2346777888776543 3333332  1224555777555544 333  578888887765443321


Q ss_pred             CCcccccEEEEEecCCEEEEEeCC---------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        495 RNKHQSAVTCLQFNSRFVITSSDD---------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       495 ~~~~~~~v~~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                        ...  ...++.||++++..+..         ..|.+.|+.+++.. .+..            ........|+|||+.+
T Consensus       320 --g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~------------~~~~~~p~~SPDG~~I  382 (419)
T PRK04043        320 --GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA------------NGVNQFPRFSSDGGSI  382 (419)
T ss_pred             --CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC------------CCCcCCeEECCCCCEE
Confidence              111  23556688888776644         36888888877632 2211            1122347899999988


Q ss_pred             EEecCC---CeEEEEeCCCC
Q psy18018        566 ITSSDD---GTVKLWDVKTG  582 (635)
Q Consensus       566 ~~~~~d---~~v~iwd~~~~  582 (635)
                      +....+   ..+.+.++...
T Consensus       383 ~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        383 MFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEEccCCcEEEEEEecCCC
Confidence            776543   23666676543

>KOG3621|consensus

Probab=98.18  E-value=0.0011  Score=64.66  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=73.8

Q ss_pred             EEEEecCCEEEEEeCCCeEEEEeCCCccceeeccc-cceeEE-eeeccCCCEEEEEeCCCcEEEEECCCCeEE-----EE
Q psy18018        146 RCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQ-ETEVEL-SHGYALRSRIVSGSDDNTLKVWSATTGKCL-----RT  218 (635)
Q Consensus       146 ~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~  218 (635)
                      +|+.-.+++++.|+.-|.+.+++-..++....... ...... ....+.+.++++|+..|.|.++-++.+.+-     ..
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            44444899999999999999999988876554442 233333 333445567777888888888877653221     11


Q ss_pred             E-eCCCCCeEEEEee--CCEEEEeeCceeEEEecccc
Q psy18018        219 L-IGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       219 ~-~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~  252 (635)
                      . ..|...|+++.|+  +..+++|...|.|..-.++.
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1 2367788888884  77888888888887765544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.15  E-value=2.9e-05  Score=66.95  Aligned_cols=127  Identities=15%  Similarity=0.268  Sum_probs=75.1

Q ss_pred             cccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCCe
Q psy18018        497 KHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDGT  573 (635)
Q Consensus       497 ~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~  573 (635)
                      .|...+.+++++  ...++++ .|-.|.+|++.-....-.+..   ..|.....-..-|++..|+|.. ..+.-.+..|.
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVD---iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVD---IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEe---ccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            467778888883  4445544 678899999874321111100   1111111123357888999964 45555777899


Q ss_pred             EEEEeCCCCce------EEeeeeccC------CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        574 VKLWDVKTGEF------IRNLVSLDS------GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       574 v~iwd~~~~~~------~~~~~~~~~------~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      |++-|++...+      +... ..++      .+....|..+.|++.|+++++-+-.   .+++|-.+-+
T Consensus       246 Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl---tvkiwDvnm~  311 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL---TVKIWDVNMA  311 (460)
T ss_pred             EEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc---eEEEEecccc
Confidence            99999973221      1111 0011      1234678999999999999876553   3677766544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.14  E-value=0.0035  Score=56.57  Aligned_cols=186  Identities=15%  Similarity=0.106  Sum_probs=109.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCC--Ccccc
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGR--NKHQS  500 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~  500 (635)
                      ++.++++-...+.|..|+..+++... +....  ..++.++  +..++.+..++ +.++|+.+++........  .....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~   86 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFN   86 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccC
Confidence            44455555567889999988775543 22222  4444443  55666666655 566699887554433321  11345


Q ss_pred             cEEEEEe--cCCEEEEEeCC--------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEE-Eec
Q psy18018        501 AVTCLQF--NSRFVITSSDD--------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI-TSS  569 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~  569 (635)
                      ....+++  +|++.++....        |.|..++.. ++......            .-...+.++|+||++.|. +-+
T Consensus        87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~------------~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD------------GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE------------EESSEEEEEEETTSSEEEEEET
T ss_pred             CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec------------CcccccceEECCcchheeeccc
Confidence            5667777  57766665543        456666666 44222211            123457899999998765 566


Q ss_pred             CCCeEEEEeCCCCce-EEeeeec-cCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        570 DDGTVKLWDVKTGEF-IRNLVSL-DSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~-~~~~~~~-~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ..+.|..+++..... +.....+ ......+..-.|++..+|++.++....+.    |+.+|.+
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~----I~~~~p~  213 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR----IVVFDPD  213 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE----EEEEETT
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE----EEEECCC
Confidence            778899999863222 2211111 11223346889999999998777666665    7777755

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114|consensus

Probab=98.13  E-value=0.0011  Score=65.98  Aligned_cols=236  Identities=14%  Similarity=0.145  Sum_probs=136.3

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc-eeEEEEe--CCEEEEEeCCCc-----EEEEEccCCcce
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL-TSGMELR--NNILVSGNADST-----VKVWDIVSGTKK  416 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-v~~l~~~--~~~l~s~~~dg~-----i~iwd~~~~~~~  416 (635)
                      .+.++++.+..++.|+.+|.|.+++-. -+.+..++.+... +..+...  .++|++.+.|+.     +++|+++..+..
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            566789999999999999998887732 4445778877776 4544443  347888777653     566666532210


Q ss_pred             eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECC--CCceeEEe
Q psy18018        417 LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIV--SGQCLQTL  492 (635)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~--~~~~~~~~  492 (635)
                      ..        ..++     +..+++....       .....++.+++.  +-..+|+|-.+|.|..+.-.  ..+-.+ .
T Consensus       106 ~s--------P~c~-----~~~ri~~~~n-------p~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~  164 (933)
T KOG2114|consen  106 NS--------PQCL-----YEHRIFTIKN-------PTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR-Q  164 (933)
T ss_pred             CC--------ccee-----eeeeeeccCC-------CCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc-e
Confidence            00        0000     0011111110       112345555655  45589999999999988532  111111 1


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      .-......+|+.+++  ++..++-+..-..|.+|.+.........          .-.|..+++|-+|++....+++++ 
T Consensus       165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~----------ld~~G~~lnCss~~~~t~qfIca~-  233 (933)
T KOG2114|consen  165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV----------LDNNGISLNCSSFSDGTYQFICAG-  233 (933)
T ss_pred             eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceee----------eccCCccceeeecCCCCccEEEec-
Confidence            111225688999999  5655233333456999998833311110          112577888989987666466555 


Q ss_pred             CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        571 DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       571 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      +..+.+||......-..+.    .++..   -+-|..-|.+|++..+-|+
T Consensus       234 ~e~l~fY~sd~~~~cfaf~----~g~kk---~~~~~~~g~~L~v~~~~~~  276 (933)
T KOG2114|consen  234 SEFLYFYDSDGRGPCFAFE----VGEKK---EMLVFSFGLLLCVTTDKGT  276 (933)
T ss_pred             CceEEEEcCCCcceeeeec----CCCeE---EEEEEecCEEEEEEccCCC
Confidence            3469999988666555552    13333   3344445777776655554

>KOG2114|consensus

Probab=98.12  E-value=0.00034  Score=69.52  Aligned_cols=194  Identities=18%  Similarity=0.195  Sum_probs=122.1

Q ss_pred             EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCcc-EEEEEecC--CEEEEEeCCCc-----EEEEECCCC-----
Q psy18018        420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL-TSGMELRN--NILVSGNADST-----VKVWDIVSG-----  486 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~--~~l~s~~~dg~-----i~iwd~~~~-----  486 (635)
                      ..+++.+..++.|+.+|.|.+++-. -+..+.++.+... +..+....  ++|++.+.|+.     +++|++..-     
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3455666778888888887777643 3445667776665 54444433  48888887765     899998632     


Q ss_pred             -cee---EEecCCCc-ccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018        487 -QCL---QTLSGRNK-HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       487 -~~~---~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                       .++   +.+....+ ...++.+++.  +-+.+|+|..+|.|..+.-.-   .+...    ........-..+|+.+++-
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi---~RDrg----sr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI---LRDRG----SRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc---hhccc----cceeeeccCCCCceeeEEe
Confidence             233   12221111 3455666666  678899999999999886321   11110    1112222346789999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCce-EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        560 FNSRFVITSSDDGTVKLWDVKTGEF-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       560 ~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      .|++.++-+..-..|.+|.++.... +..+     ..++.++.+..|++...-+++++.+.     |+.||.+
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l-----d~~G~~lnCss~~~~t~qfIca~~e~-----l~fY~sd  243 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVL-----DNNGISLNCSSFSDGTYQFICAGSEF-----LYFYDSD  243 (933)
T ss_pred             cCCceeEEEEecceeEEEEecCCCcceeee-----ccCCccceeeecCCCCccEEEecCce-----EEEEcCC
Confidence            9998733344455799999984442 3334     56778899999988766577777765     5666543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.08  E-value=0.0015  Score=64.25  Aligned_cols=167  Identities=10%  Similarity=0.033  Sum_probs=95.5

Q ss_pred             CcEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEEeCCC----cEEEEECCCCceeEEecCCCcccccEEEEEecCC
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADS----TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR  510 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  510 (635)
                      +.+.+.|.++.+...++.--.. .-..+.++++++++.+.+.    ++..-+..+......+..     ..+..+.-+|+
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-----~~iea~vkdGK  289 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-----ARIEEAVKAGK  289 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-----HHHHHhhhCCC
Confidence            4566667776665554433222 2334455666666665321    222222221111111110     01111222577


Q ss_pred             EEEEEeCCCcEEEEECCC----C-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCce
Q psy18018        511 FVITSSDDGTVKLWDVKT----G-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEF  584 (635)
Q Consensus       511 ~l~~~~~d~~i~vwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~  584 (635)
                      +...  .++.|.+.|..+    + +....+            .-......+.+||||+++++++ .+.+|.|.|+++.+.
T Consensus       290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yI------------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        290 FKTI--GGSKVPVVDGRKAANAGSALTRYV------------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             EEEE--CCCEEEEEECCccccCCcceEEEE------------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence            6665  367899999887    2 333322            2355667789999999888765 589999999988653


Q ss_pred             ------------EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        585 ------------IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       585 ------------~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                                  ..+.      .....-...+|.++|....+..-|..    +..||++
T Consensus       356 ~~~~~~~~~~~vvaev------evGlGPLHTaFDg~G~aytslf~dsq----v~kwn~~  404 (635)
T PRK02888        356 LFDGKIKPRDAVVAEP------ELGLGPLHTAFDGRGNAYTTLFLDSQ----IVKWNIE  404 (635)
T ss_pred             hhhccCCccceEEEee------ccCCCcceEEECCCCCEEEeEeecce----eEEEehH
Confidence                        3333      12344557789999998888888876    5556554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.0018  Score=61.77  Aligned_cols=259  Identities=10%  Similarity=0.109  Sum_probs=129.9

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEE--e----ee---------CCCcceeEEEEe--CCEEEEEeCCC--cEE
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH--T----LM---------GHQSLTSGMELR--NNILVSGNADS--TVK  406 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~----~~---------~~~~~v~~l~~~--~~~l~s~~~dg--~i~  406 (635)
                      .+.|+++..-|++|...|.|.+|.....+.-.  .    ..         ...+.+..+.--  ++ +    .+|  -+.
T Consensus         6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~-~----~~gf~P~~   80 (395)
T PF08596_consen    6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPS-L----KEGFLPLT   80 (395)
T ss_dssp             EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT------SEEEEEEE
T ss_pred             EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcc-c----ccccCchh
Confidence            45677888889999999999999876432221  0    00         001122222110  00 0    011  122


Q ss_pred             EEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec--c------CCccEEEEEe-----cC-----CE
Q psy18018        407 VWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--G------HQSLTSGMEL-----RN-----NI  468 (635)
Q Consensus       407 iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~------~~~~v~~~~~-----~~-----~~  468 (635)
                      +.+...   .....+...|=.+++.|..+|.+.+.|++....+..-.  .      ....++++.|     .+     -.
T Consensus        81 l~~~~~---g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   81 LLDAKQ---GPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EE---S----SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             heeccC---CcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            333331   12222233577788889999999999998776665421  1      2235667766     12     27


Q ss_pred             EEEEeCCCcEEEEECC--C-CceeEEecCCC-cccccEEEEEe-c---C--------------------CEEEEEeCCCc
Q psy18018        469 LVSGNADSTVKVWDIV--S-GQCLQTLSGRN-KHQSAVTCLQF-N---S--------------------RFVITSSDDGT  520 (635)
Q Consensus       469 l~s~~~dg~i~iwd~~--~-~~~~~~~~~~~-~~~~~v~~~~~-~---~--------------------~~l~~~~~d~~  520 (635)
                      +++|...|.+.+|.+.  . +.....+.... .+..+|..+.. +   |                    .+++++ .+..
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~  236 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESD  236 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccc
Confidence            8899999999999774  1 22222221111 24455544443 1   0                    144444 4677


Q ss_pred             EEEEECCCCceeeeeccceecCceeEEeccCceecccc-----cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCC
Q psy18018        521 VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL-----QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGG  595 (635)
Q Consensus       521 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  595 (635)
                      +|++...+.+...+....           ......+++     ...+..|++-..+|.++++.+..-+.+..+.... ..
T Consensus       237 irv~~~~~~k~~~K~~~~-----------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~-~~  304 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSFDD-----------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP-PL  304 (395)
T ss_dssp             EEEE-TT---EEEEE-SS------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---
T ss_pred             eEEEeCCCCcccceeecc-----------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC-cc
Confidence            999999887754433211           011112222     2356788888999999999999999888775321 12


Q ss_pred             CCceEEEEEeCCCCeEEEEccCCCeeEeEE
Q psy18018        596 SGGVVWRIRASETKLVCAVGSRNGTEETKL  625 (635)
Q Consensus       596 ~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l  625 (635)
                      ....+....++++|+.++-.+......+.+
T Consensus       305 d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  305 DSRRLSSSSISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             -HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             ccccccccEECCCCCEEEEeCcccEEEEEE
Confidence            334556777899999988887776533333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617|consensus

Probab=97.99  E-value=0.0045  Score=61.81  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=51.9

Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCC
Q psy18018        115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus       115 l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      |+.|-.-|.+.+|...+.+.-.....|..+|..+.|  +|..|.|+..-|.|.+|..+-
T Consensus        74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            899999999999998887777777789999999999  999999999999999998773

>KOG3621|consensus

Probab=97.99  E-value=0.0016  Score=63.47  Aligned_cols=108  Identities=12%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             CCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEE
Q psy18018         40 PCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVS  117 (635)
Q Consensus        40 ~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~  117 (635)
                      ..++||+.|...+.+|+        ++-..++..+.-.+-...++.....|  ..++|.|+..|.|.++.+..+.+-   
T Consensus        43 st~~~l~~GsS~G~lyl--------~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~---  111 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYL--------YNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR---  111 (726)
T ss_pred             cCCceEEEecccceEEE--------EecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC---
Confidence            44899999998777764        66555444332221122233445555  777788888899999888753310   


Q ss_pred             eeCCCcEEEEeCCCCeEEEEe-eCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCC
Q psy18018        118 GSRDATLRVWHIESGECLHVL-VGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus       118 ~~~dg~i~vwd~~~~~~~~~l-~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~  171 (635)
                                   ....+... +.|...|+|++|  ++..+.+|...|.|..-.++.
T Consensus       112 -------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 -------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             -------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                         00111111 138899999999  999999999999999988887

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.95  E-value=0.014  Score=53.00  Aligned_cols=57  Identities=12%  Similarity=0.309  Sum_probs=39.3

Q ss_pred             cEEEEeCCCCceeeeeccCCccEEEEEe--cCC-EEEE-EeCCCcEEEEECCCCceeEEecC
Q psy18018        437 SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN-ILVS-GNADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                      .|.++|+.+++.+.++... .++.++..  +.+ +|++ ...++.+.+||..+++.++.+..
T Consensus       270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            5888999999999888742 23445555  332 5554 45689999999999999998875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.94  E-value=0.0084  Score=58.20  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             cCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEE
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVC  612 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  612 (635)
                      .+++..+++||+++++|.-..+|.+.|....-.+.+..+..    ........|.|..+...+
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~----~~~~~p~~~~WCG~dav~  274 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT----DSKSPPKQMAWCGNDAVV  274 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec----CcCCCCcEEEEECCCcEE
Confidence            45899999999999999999999999998766666555532    223455677777665433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920|consensus

Probab=97.92  E-value=0.014  Score=61.13  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=67.2

Q ss_pred             EeeCCcEEEEE-----eCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe---CCCcEEEEECCCCceeEE
Q psy18018        422 CLFDGVHVVSG-----SLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN---ADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       422 ~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~~  491 (635)
                      +--||+++++.     ...+.|++||.+ |.+...-....+.-.+++|  .|..+++-.   .|+.|.++... |-.-..
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Cccccc
Confidence            44578888873     233899999987 5544333333333345665  456766653   45679999854 333333


Q ss_pred             ecCCCccc-ccEEEEEe--cCCEEEE---EeCCCcEEEEECCCCceeee
Q psy18018        492 LSGRNKHQ-SAVTCLQF--NSRFVIT---SSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       492 ~~~~~~~~-~~v~~~~~--~~~~l~~---~~~d~~i~vwd~~~~~~~~~  534 (635)
                      +..+.+.+ ..+..++|  ++..|++   ......|++|-+.+.....+
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLK  329 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLK  329 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEE
Confidence            32222223 33899999  4777777   44445599999988765443

>KOG1832|consensus

Probab=97.91  E-value=7.3e-06  Score=80.87  Aligned_cols=125  Identities=18%  Similarity=0.326  Sum_probs=85.9

Q ss_pred             CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC  147 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~  147 (635)
                      ++..++++.|+..- +|++|+  .++|+.|+..|.|+++++.+|                     .......+|..+|+-
T Consensus      1091 Fr~w~~frd~~~~f-Tc~afs~~~~hL~vG~~~Geik~~nv~sG---------------------~~e~s~ncH~SavT~ 1148 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALF-TCIAFSGGTNHLAVGSHAGEIKIFNVSSG---------------------SMEESVNCHQSAVTL 1148 (1516)
T ss_pred             cccchhhhccccce-eeEEeecCCceEEeeeccceEEEEEccCc---------------------ccccccccccccccc
Confidence            45566788888766 999999  778888888888777777654                     445667799999999


Q ss_pred             EEe--cCCEEEEEeCCC--eEEEEeCCC-ccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        148 VQY--DGKLVVSGAYDY--MVKIWNPDT-EECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       148 l~~--~~~~l~s~~~dg--~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      +..  ||..+.+.+.-.  -..+|+... +...+.+.....+.++-.   ...-+.|+......+||++++.++.++
T Consensus      1149 vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~---~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1149 VEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNS---LQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             ccccCCcceeeeeccccCchHHHhccccccCccccccccceeehhhh---HHHHHhcccccceEEEecccCcHHHHh
Confidence            998  888777766544  467898764 344444444433332211   222344555567899999998887763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.87  E-value=0.017  Score=53.29  Aligned_cols=218  Identities=17%  Similarity=0.248  Sum_probs=127.6

Q ss_pred             EecCcEEEEecCCCeEEEEEccC-CceEEeeeCCCcceeEEEEeC--CEEEEEeCCCcEEEEEccCCcceeE--------
Q psy18018        350 QFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGTKKLM--------  418 (635)
Q Consensus       350 s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~--------  418 (635)
                      ...++.|+.|+++| +.+++... ........  ...|..+..-+  +.+++- .|+.+.++++..-.....        
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence            34678899999998 89999832 22222222  22377777753  344444 359999999765432221        


Q ss_pred             -------------EEEEe----eCCcEEEEEeCCCcEEEEeCCCC-----ceeeeeccCCccEEEEEecCCEEEEEeCCC
Q psy18018        419 -------------FRICL----FDGVHVVSGSLDTSIRVWEAESG-----NLRHTLMGHQSLTSGMELRNNILVSGNADS  476 (635)
Q Consensus       419 -------------~~~~~----~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg  476 (635)
                                   ...+.    ..+...++....++|.+|.....     +..+++. -...+.++.+.++.++.|..++
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~  158 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG  158 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc
Confidence                         01122    23444445555668888887653     3344443 3467788888899988888665


Q ss_pred             cEEEEECCCCceeEEecCCC---------cccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeE
Q psy18018        477 TVKVWDIVSGQCLQTLSGRN---------KHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       477 ~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  546 (635)
                       ..+.|+.++.....+....         ....++..+..+ +.+|++-  |. +-+|=-..|+...          ...
T Consensus       159 -f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~-~g~fv~~~G~~~r----------~~~  224 (275)
T PF00780_consen  159 -FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DN-IGVFVNKNGEPSR----------KST  224 (275)
T ss_pred             -eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cc-eEEEEcCCCCcCc----------ccE
Confidence             8889998776544432211         112345555554 5555543  22 3333223344222          112


Q ss_pred             EeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      +.+.....++++  ...||+..+. +.|.||++.++++++.+.
T Consensus       225 i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  225 IQWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            224455556665  4567776665 559999999999988883

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.86  E-value=0.0091  Score=56.37  Aligned_cols=172  Identities=13%  Similarity=0.132  Sum_probs=103.2

Q ss_pred             CcEEEEeCCCC----ceeeee--ccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCc-eeEEecCCCcccccEEEEEec
Q psy18018        436 TSIRVWEAESG----NLRHTL--MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQ-CLQTLSGRNKHQSAVTCLQFN  508 (635)
Q Consensus       436 ~~i~~~d~~~~----~~~~~~--~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~  508 (635)
                      |.+.++++.+.    ..+..+  ....++|.++..-++.++++. .+.|.+|++...+ ....-..  .....+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhhee--cceEEEEEEecc
Confidence            77888888773    122211  234678999987666655544 4789999998777 4333221  133478888888


Q ss_pred             CCEEEEEeCCCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC------
Q psy18018        509 SRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT------  581 (635)
Q Consensus       509 ~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~------  581 (635)
                      +++++.|+....+.++..+.. ..+..+...         .....++++.|-+|++.++.++.+|.+.++....      
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d---------~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~  209 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENNKLILVARD---------YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSR  209 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE-EEEEEEE---------SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred             ccEEEEEEcccCEEEEEEEccCCEEEEEEec---------CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccc
Confidence            889999998888988755432 212222111         1234577888886777999999999999998763      


Q ss_pred             -Cc-eEEeeeeccCCCCCceEEEE---EeCCC--C------eEEEEccCCCeeE
Q psy18018        582 -GE-FIRNLVSLDSGGSGGVVWRI---RASET--K------LVCAVGSRNGTEE  622 (635)
Q Consensus       582 -~~-~~~~~~~~~~~~~~~~i~~l---~~s~d--~------~~l~~~~~dg~~~  622 (635)
                       +. .+.....+   ..+..|+++   .+.|.  +      ..++.++.+|.+.
T Consensus       210 ~~~~~L~~~~~f---~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  210 DGDPKLERISSF---HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             TTTTBEEEEEEE---E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             cccccceeEEEE---ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence             22 23322221   345667777   66662  2      2478888888843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.84  E-value=0.032  Score=53.95  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=62.4

Q ss_pred             eeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEe
Q psy18018        544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEET  623 (635)
Q Consensus       544 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~  623 (635)
                      +........+.+.+++|+...|+.|+.||+|.+||...+.....-       ..-..+.++|+|+|.++++|++.|.   
T Consensus       253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-------a~~~P~~iaWHp~gai~~V~s~qGe---  322 (545)
T PF11768_consen  253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-------AEFIPTLIAWHPDGAIFVVGSEQGE---  322 (545)
T ss_pred             EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-------ecccceEEEEcCCCcEEEEEcCCce---
Confidence            445567889999999999999999999999999998776433221       2335789999999999999999998   


Q ss_pred             EEEEEeee
Q psy18018        624 KLLVLDFD  631 (635)
Q Consensus       624 ~l~~~d~~  631 (635)
                       +..||..
T Consensus       323 -lQ~FD~A  329 (545)
T PF11768_consen  323 -LQCFDMA  329 (545)
T ss_pred             -EEEEEee
Confidence             6666653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.75  E-value=0.0058  Score=59.30  Aligned_cols=171  Identities=17%  Similarity=0.188  Sum_probs=86.9

Q ss_pred             cEEEEeCCCCceeeeeccCCccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeEEecCCC----cccccEEEEEecCCE
Q psy18018        437 SIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGQCLQTLSGRN----KHQSAVTCLQFNSRF  511 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~  511 (635)
                      .|.+|+.. |+++..+.-..+.+.++.|. ...|++...||.+++||+. |+....+....    -....+....+.+.-
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            48888765 56666655444888999995 5588888999999999986 33311111100    011122222332122


Q ss_pred             EEEEeCCCcEEEEECCCCcee-eeeccceecCceeEEeccCceec-ccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        512 VITSSDDGTVKLWDVKTGEFS-TPLMSSFILNPFYFLIYSQPLLC-PHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       512 l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ++.-..++.+.+..--..... .... ..+........+. .... ..++.+....+....++.+.+.+-...+.   + 
T Consensus       140 ivvLt~~~~~~~v~n~~~~~~~~~~~-~~p~~~~~~~~~~-~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-  213 (410)
T PF04841_consen  140 IVVLTGNNRFYVVNNIDEPVKLRRLP-EIPGLWTKFHWWP-SWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-  213 (410)
T ss_pred             EEEECCCCeEEEEeCccccchhhccc-cCCCccccccccc-ccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence            333334455544432222111 1110 0000000000000 1111 23444555555555555566444332211   2 


Q ss_pred             eccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        590 SLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       590 ~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                           ...+++..|+.||+|++||.-..+|.
T Consensus       214 -----~~~~~i~~iavSpng~~iAl~t~~g~  239 (410)
T PF04841_consen  214 -----DSDGPIIKIAVSPNGKFIALFTDSGN  239 (410)
T ss_pred             -----cCCCCeEEEEECCCCCEEEEEECCCC
Confidence                 23468999999999999999999998

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.73  E-value=0.013  Score=56.48  Aligned_cols=118  Identities=12%  Similarity=0.120  Sum_probs=76.4

Q ss_pred             EEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      .+|+....+..+.--..-+....+.+.++  +...++.|+.||.|.+||...+..... .            ..-..+.+
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k------------a~~~P~~i  305 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K------------AEFIPTLI  305 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e------------ecccceEE
Confidence            45666544322211111125667888888  588999999999999999987643221 1            13346789


Q ss_pred             cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec-----------cCCCCCceEEEEEeCCCC
Q psy18018        557 HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL-----------DSGGSGGVVWRIRASETK  609 (635)
Q Consensus       557 ~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~i~~l~~s~d~  609 (635)
                      +|+|+|.++++|+..|.+.+||+.-.....++..-           .--.+...+..+.|++..
T Consensus       306 aWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  306 AWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             EEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence            99999999999999999999998644322222100           001345567788888543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.73  E-value=0.0099  Score=56.85  Aligned_cols=201  Identities=12%  Similarity=0.103  Sum_probs=99.9

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeee--C------CCcceeEEEEe-----C-----CEEEEEeCCCcEEEEEccC-
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLM--G------HQSLTSGMELR-----N-----NILVSGNADSTVKVWDIVS-  412 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~------~~~~v~~l~~~-----~-----~~l~s~~~dg~i~iwd~~~-  412 (635)
                      |=.++++|..+|.+.+.|++....+..-.  .      ....++++.|.     +     -.+++|+..|.+.+|.+.. 
T Consensus        96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~  175 (395)
T PF08596_consen   96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS  175 (395)
T ss_dssp             BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred             CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence            77899999999999999998777665421  1      23367778774     1     2677888888888887652 


Q ss_pred             CcceeEEEEEeeCCcEEEEEeCCC---cEEEEeCCCCceeeee----ccCCccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018        413 GTKKLMFRICLFDGVHVVSGSLDT---SIRVWEAESGNLRHTL----MGHQSLTSGMELRNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  485 (635)
                      .............      ...++   .|..++.++++....-    .+-...   +.  -+-++....+..++++...+
T Consensus       176 ~~g~f~v~~~~~~------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g---~~--i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  176 SNGRFSVQFAGAT------TNHDSPILSIIPINADTGESALATISAMQGLSKG---IS--IPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             GGG-EEEEEEEEE--------SS----EEEEEETTT--B-B-BHHHHHGGGGT---------EEEEEE-SSEEEEE-TT-
T ss_pred             CCCceEEEEeecc------ccCCCceEEEEEEECCCCCcccCchhHhhccccC---CC--cCcEEEEEcccceEEEeCCC
Confidence            1111111110000      01111   2333344444321111    000000   00  01234444567799999988


Q ss_pred             CceeEEecCCCcccccEEEEE-----ecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQ-----FNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                      .+....... ........++.     ..+..|++-..+|.+++|.+...+.+.........       ....+...++++
T Consensus       245 ~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~-------d~~~~~~ssis~  316 (395)
T PF08596_consen  245 SKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL-------DSRRLSSSSISR  316 (395)
T ss_dssp             --EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----------HHHHTT-EE-T
T ss_pred             Ccccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc-------ccccccccEECC
Confidence            776655542 11111122221     14778899999999999999998877766543111       123455677888


Q ss_pred             CCeEEEEecCC
Q psy18018        561 NSRFVITSSDD  571 (635)
Q Consensus       561 ~~~~l~~~~~d  571 (635)
                      +|..++-.+..
T Consensus       317 ~Gdi~~~~gps  327 (395)
T PF08596_consen  317 NGDIFYWTGPS  327 (395)
T ss_dssp             TS-EEEE-SSS
T ss_pred             CCCEEEEeCcc
Confidence            99977766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.72  E-value=0.039  Score=50.91  Aligned_cols=152  Identities=14%  Similarity=0.208  Sum_probs=82.6

Q ss_pred             cEEEEecCCCeEEEEEccCC-----ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        354 VHVVSGSLDTSIRVWEAESG-----NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      .+|+++. ...|.+|.....     ...+++.- ...+..++|.++.++.+..++ ..+.|+.++........   +...
T Consensus       106 ~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~---~~~~  179 (275)
T PF00780_consen  106 RRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDP---SDSS  179 (275)
T ss_pred             eEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCc---cCCc
Confidence            3444444 448888887653     34444443 367888888888888877554 56666664433222110   0000


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeE--EecCCCcccccEEEE
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGQCLQ--TLSGRNKHQSAVTCL  505 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~  505 (635)
                                        ...........++..+..+ +.+|++ . |..-.+.|. .|++.+  .+.    -.....++
T Consensus       180 ------------------~~~~~~~~~~~~~~~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~----W~~~p~~~  234 (275)
T PF00780_consen  180 ------------------SSFKSRNSSSKPLGIFQLSDNEFLLC-Y-DNIGVFVNK-NGEPSRKSTIQ----WSSAPQSV  234 (275)
T ss_pred             ------------------chhhhcccCCCceEEEEeCCceEEEE-e-cceEEEEcC-CCCcCcccEEE----cCCchhEE
Confidence                              0000111122344455554 334443 3 222333343 444433  333    33456678


Q ss_pred             EecCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018        506 QFNSRFVITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       506 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      ++...+|+....+ .|.||++.++++++.+..
T Consensus       235 ~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  235 AYSSPYLIAFSSN-SIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence            8888888887765 499999999998877654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.71  E-value=0.00089  Score=68.48  Aligned_cols=134  Identities=13%  Similarity=0.247  Sum_probs=95.6

Q ss_pred             CCCcEEEEeCCCCceeeeeccCCcc-EEEEEec-------CCEEEEEeCCCcEEEEECCCCc--eeEEecCCCcccccEE
Q psy18018        434 LDTSIRVWEAESGNLRHTLMGHQSL-TSGMELR-------NNILVSGNADSTVKVWDIVSGQ--CLQTLSGRNKHQSAVT  503 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~  503 (635)
                      ....++-.|++.|+.+..+..|... |..+.++       +.-.+.|-.+..+..||++-..  ++..-..........+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4678999999999999999988754 7887764       3456778888899999998532  2221111112445567


Q ss_pred             EEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        504 CLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       504 ~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      |++- ...++|+|+.+|.||+||- .+..-++..          .....+|..+..+.||++++..+ +..+.+++.
T Consensus       582 ~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~l----------p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTAL----------PGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEecCCceEEEEeCCCcEEeecc-cchhhhhcC----------CCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            7777 4678999999999999993 232111111          12478999999999999988555 667888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0044  Score=45.72  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=53.1

Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC
Q psy18018        115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR  193 (635)
Q Consensus       115 l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (635)
                      |++|+.|..|++|+-  .+.+.++.. .+.|+++.. .+.+++.+..+|+|-+|+-  ...+.+......+.....+..+
T Consensus        18 LlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~   92 (111)
T PF14783_consen   18 LLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDIN   92 (111)
T ss_pred             EEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCC
Confidence            444444444444442  355666654 456667766 7789999999999999975  3334444444445544444433


Q ss_pred             ----CEEEEEeCCCcEE
Q psy18018        194 ----SRIVSGSDDNTLK  206 (635)
Q Consensus       194 ----~~l~~~~~dg~i~  206 (635)
                          ..|++|-.+|.|-
T Consensus        93 gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   93 GDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCCceEEEEEecCCeEE
Confidence                2677777777664

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.67  E-value=0.012  Score=52.89  Aligned_cols=199  Identities=17%  Similarity=0.149  Sum_probs=118.0

Q ss_pred             EEecCCCCCCCceeecCCcchheeeccceeeeeeecC-CCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEEC
Q psy18018         32 LQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTR-PIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSA  108 (635)
Q Consensus        32 ~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~-~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~  108 (635)
                      -+||    |||++|-+.+.+..   .....+-|||+. +.+.+.++..|-=.. ..+.+.  |+.|+.+-  |-| -=+.
T Consensus        56 g~fs----~dG~~LytTEnd~~---~g~G~IgVyd~~~~~~ri~E~~s~GIGP-Hel~l~pDG~tLvVAN--GGI-~Thp  124 (305)
T PF07433_consen   56 GVFS----PDGRLLYTTENDYE---TGRGVIGVYDAARGYRRIGEFPSHGIGP-HELLLMPDGETLVVAN--GGI-ETHP  124 (305)
T ss_pred             EEEc----CCCCEEEEeccccC---CCcEEEEEEECcCCcEEEeEecCCCcCh-hhEEEcCCCCEEEEEc--CCC-ccCc
Confidence            4588    99999999987753   457788889999 777788888765444 556666  76776642  111 1123


Q ss_pred             CCCcEEEEEeeCCCcEEEEeCCCCeEEEE--e--eCCCcceEEEEe--cCCEEEEEeCCCe-------EEEEeCCCccce
Q psy18018        109 TTGKCLLVSGSRDATLRVWHIESGECLHV--L--VGHLAAVRCVQY--DGKLVVSGAYDYM-------VKIWNPDTEECL  175 (635)
Q Consensus       109 ~~~~~ll~~~~~dg~i~vwd~~~~~~~~~--l--~~h~~~v~~l~~--~~~~l~s~~~dg~-------v~iwd~~~~~~~  175 (635)
                      ++|+.-|-....+.++..-|..+|+.+..  +  .-|+..|..+++  +|..++..-..|.       |-+++....  +
T Consensus       125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~  202 (305)
T PF07433_consen  125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L  202 (305)
T ss_pred             ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c
Confidence            34455455556677788888888887765  5  348889999999  4444433332221       223332221  1


Q ss_pred             eecccc--------ceeEEeeeccCCCEE-EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeE
Q psy18018        176 HAELQE--------TEVELSHGYALRSRI-VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTL  245 (635)
Q Consensus       176 ~~~~~~--------~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i  245 (635)
                      ..+...        .-+-.......+..+ +++-..+.+.+||..+++.+....-  ..+..++.. +.++++.+. |.+
T Consensus       203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ssG~-G~~  279 (305)
T PF07433_consen  203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSSGQ-GQL  279 (305)
T ss_pred             eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeCCC-ccE
Confidence            111111        112223333344455 4455678999999999998876542  334555553 334555444 444


Q ss_pred             E
Q psy18018        246 K  246 (635)
Q Consensus       246 ~  246 (635)
                      .
T Consensus       280 ~  280 (305)
T PF07433_consen  280 I  280 (305)
T ss_pred             E
Confidence            3

>KOG1832|consensus

Probab=97.66  E-value=9.5e-05  Score=73.42  Aligned_cols=156  Identities=20%  Similarity=0.309  Sum_probs=104.9

Q ss_pred             ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCC--cEEEEECCC-Ccee
Q psy18018        415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADS--TVKVWDIVS-GQCL  489 (635)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg--~i~iwd~~~-~~~~  489 (635)
                      ...+...++.+.++|++|+..|.|++|++.+|........|.+.++-+.+  ++..+++.+.-.  -..+|++.+ +.+.
T Consensus      1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred             cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence            44455567778889999999999999999999999999999999999988  566555544332  467899864 3333


Q ss_pred             EEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        490 QTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                      ..+.       .-.++.|.  ...-+.|.......+||++++....++-......       +..-++..|||+..+++ 
T Consensus      1182 Hsf~-------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~-------~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1182 HSFD-------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS-------SYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             cccc-------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh-------hhhccccccCCCcceEe-
Confidence            3333       23456663  2333445555669999999998766643321111       11226677888888776 


Q ss_pred             ecCCCeEEEEeCCCCceEEeee
Q psy18018        568 SSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       568 ~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                        .||  .+||+...+.+..|-
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhh
Confidence              344  467777766666553

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.64  E-value=0.0074  Score=56.97  Aligned_cols=175  Identities=13%  Similarity=0.191  Sum_probs=101.8

Q ss_pred             cEEEEeCCCCceeeeeccCC-ccEEEE---Eec------CCEEEEEeC----------CCcEEEEECCCC----ceeEEe
Q psy18018        437 SIRVWEAESGNLRHTLMGHQ-SLTSGM---ELR------NNILVSGNA----------DSTVKVWDIVSG----QCLQTL  492 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~~-~~v~~~---~~~------~~~l~s~~~----------dg~i~iwd~~~~----~~~~~~  492 (635)
                      .|++.|..+.+.+..+.-.. ..+.++   .+.      ..++++|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            46777777666655544322 233333   333      246666643          288999999884    222222


Q ss_pred             cCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCc-eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        493 SGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      . .....++|++++.-+.+|+.+. .+.|.+|++...+ +.....            +..++...+....+.++++|+..
T Consensus        83 ~-~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~------------~~~~~~i~sl~~~~~~I~vgD~~  148 (321)
T PF03178_consen   83 H-STEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAF------------YDSPFYITSLSVFKNYILVGDAM  148 (321)
T ss_dssp             E-EEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEE------------E-BSSSEEEEEEETTEEEEEESS
T ss_pred             E-EEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhhe------------ecceEEEEEEeccccEEEEEEcc
Confidence            2 1225788999988444455554 4789999999887 333222            12222333333346689999988


Q ss_pred             CeEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        572 GTVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       572 ~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      ..+.++..+. ...+..+..   ......++++.|-+|+..+++++.+|.  +.++.++.
T Consensus       149 ~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~~gn--l~~l~~~~  203 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGDKDGN--LFVLRYNP  203 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEETTSE--EEEEEE-S
T ss_pred             cCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEcCCCe--EEEEEECC
Confidence            8888885543 332333322   234567999999877779999999998  44555543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441|consensus

Probab=97.60  E-value=0.021  Score=57.96  Aligned_cols=224  Identities=17%  Similarity=0.271  Sum_probs=133.9

Q ss_pred             cCcEEEEecCC------CeEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeCC-C-----cEEEEEccCCccee
Q psy18018        352 DGVHVVSGSLD------TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD-S-----TVKVWDIVSGTKKL  417 (635)
Q Consensus       352 ~~~~l~~~~~d------g~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~d-g-----~i~iwd~~~~~~~~  417 (635)
                      .+..++.|+..      ..+..||..++.-..  .+.............+...++|+.| |     .+..||....+...
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            45667777776      357788887764332  2222223333334446677888888 3     46677777665332


Q ss_pred             ---------EEEEEeeCCcEEEEEeCCCc-----EEEEeCCCCce--eeeeccCCccEEEEEecCCEEEEEeCCC-----
Q psy18018        418 ---------MFRICLFDGVHVVSGSLDTS-----IRVWEAESGNL--RHTLMGHQSLTSGMELRNNILVSGNADS-----  476 (635)
Q Consensus       418 ---------~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----  476 (635)
                               ......-+|...++|+.||.     +..||..+.+-  +..+...........+++.+.++||.++     
T Consensus       364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL  443 (571)
T ss_pred             cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence                     22235668889999998864     66788776543  2222223334445566888889998664     


Q ss_pred             -cEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCc-----EEEEECCCCceeeeeccceecCceeEEecc
Q psy18018        477 -TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGT-----VKLWDVKTGEFSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       477 -~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  550 (635)
                       ++..||..+++-...-.. ............++...+.|+.|+.     +..||..+.+........            
T Consensus       444 ~sve~YDP~t~~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~------------  510 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPM-NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT------------  510 (571)
T ss_pred             ceEEEEcCCCCceeecCCc-ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc------------
Confidence             467888877653322221 1122333345558999999998873     677888877654432111            


Q ss_pred             Cceeccc-ccCCCeEEEEecCCC-----eEEEEeCCCCceEEee
Q psy18018        551 QPLLCPH-LQFNSRFVITSSDDG-----TVKLWDVKTGEFIRNL  588 (635)
Q Consensus       551 ~~v~~~~-~s~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~  588 (635)
                      .+..... ..-++++.++|+.||     +|..||..+++.....
T Consensus       511 ~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~  554 (571)
T KOG4441|consen  511 SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT  554 (571)
T ss_pred             cccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence            0111111 112678888888885     6888888887765443

>KOG1008|consensus

Probab=97.55  E-value=3.6e-05  Score=73.40  Aligned_cols=187  Identities=16%  Similarity=0.252  Sum_probs=112.1

Q ss_pred             EEEEeCCCcEEEEeCCCCce--eeeeccCCccEEEEEec---CCEEEEEe----CCCcEEEEECCCC--ceeEEecCCCc
Q psy18018        429 VVSGSLDTSIRVWEAESGNL--RHTLMGHQSLTSGMELR---NNILVSGN----ADSTVKVWDIVSG--QCLQTLSGRNK  497 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~---~~~l~s~~----~dg~i~iwd~~~~--~~~~~~~~~~~  497 (635)
                      +++|..+|.|.+-..+...-  .....++....++++|.   .+.||+|-    .|..+.|||+.++  .+.........
T Consensus        73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~  152 (783)
T KOG1008|consen   73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS  152 (783)
T ss_pred             hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc
Confidence            55555566666655544322  23445677788888885   35666663    3567999999876  22222111111


Q ss_pred             ccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeE
Q psy18018        498 HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTV  574 (635)
Q Consensus       498 ~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v  574 (635)
                      ......+++|  +.+++.+|.....++++|++.........            ....+..+.++| .+.|+++-. ||.|
T Consensus       153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------------nTk~vqG~tVdp~~~nY~cs~~-dg~i  219 (783)
T KOG1008|consen  153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------------NTKYVQGITVDPFSPNYFCSNS-DGDI  219 (783)
T ss_pred             cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------------hhhhcccceecCCCCCceeccc-cCce
Confidence            2334456777  68889999999999999998432211111            123455677788 788887655 9999


Q ss_pred             EEEeC-CCC-ceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEEeeec
Q psy18018        575 KLWDV-KTG-EFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       575 ~iwd~-~~~-~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      .+||. ..- ..+..+.. .+..-...+..++|.|... +|++...|..   .|+.+|+..
T Consensus       220 AiwD~~rnienpl~~i~~-~~N~~~~~l~~~aycPtrtglla~l~RdS~---tIrlydi~~  276 (783)
T KOG1008|consen  220 AIWDTYRNIENPLQIILR-NENKKPKQLFALAYCPTRTGLLAVLSRDSI---TIRLYDICV  276 (783)
T ss_pred             eeccchhhhccHHHHHhh-CCCCcccceeeEEeccCCcchhhhhccCcc---eEEEecccc
Confidence            99993 222 22222211 1112233599999999765 6677777653   466666543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.48  E-value=0.0074  Score=58.54  Aligned_cols=138  Identities=11%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeee
Q psy18018        459 TSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPL  535 (635)
Q Consensus       459 v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~  535 (635)
                      ...++.  +++.+++ +.||.-.|+.....+....-        .-..+.| ....+|+-...+.|.++.--+.+....+
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G--------~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFG--------SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEE--------E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccC--------ceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence            445555  4556665 67888888885444433322        2233555 3456777777888999743333322222


Q ss_pred             ccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                      ...            ..+..+-.   |.+|+..+.+ .|.+||.++++.++.+.       -.+|..+.|+++|+++|..
T Consensus       106 ~~~------------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~-------v~~vk~V~Ws~~g~~val~  162 (443)
T PF04053_consen  106 KLP------------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID-------VSAVKYVIWSDDGELVALV  162 (443)
T ss_dssp             --S------------S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES-------S-E-EEEEE-TTSSEEEEE
T ss_pred             cCC------------cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe-------cCCCcEEEEECCCCEEEEE
Confidence            221            11122211   7877777655 89999999999999983       2248999999999999999


Q ss_pred             cCCCeeEeEEEEEeee
Q psy18018        616 SRNGTEETKLLVLDFD  631 (635)
Q Consensus       616 ~~dg~~~~~l~~~d~~  631 (635)
                      +.+..   .++.+|++
T Consensus       163 t~~~i---~il~~~~~  175 (443)
T PF04053_consen  163 TKDSI---YILKYNLE  175 (443)
T ss_dssp             -S-SE---EEEEE-HH
T ss_pred             eCCeE---EEEEecch
Confidence            99873   45555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920|consensus

Probab=97.45  E-value=0.076  Score=55.99  Aligned_cols=68  Identities=12%  Similarity=-0.006  Sum_probs=54.0

Q ss_pred             CcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEE
Q psy18018        142 LAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWS  209 (635)
Q Consensus       142 ~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  209 (635)
                      ...|.++.|  ++..++.+..+|.|.+-|.++......-....++..+...++...++..+..+++.+-.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            368999999  89999999999999999988876655555566677777777888888888877776654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.41  E-value=0.059  Score=56.34  Aligned_cols=71  Identities=17%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-CCe---EEEEecCCCeEEEEeCCCCceEEeeee
Q psy18018        518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSR---FVITSSDDGTVKLWDVKTGEFIRNLVS  590 (635)
Q Consensus       518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~  590 (635)
                      .+.|.-.|.++|+..-.++...+..--... -..++ -+.+.- +|+   .++.++.+|.+.+.|-++|+.+.....
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~-~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDV-PAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccc-cCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            345667788888877665542110000000 01111 111222 553   888999999999999999999887643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.37  E-value=0.021  Score=42.32  Aligned_cols=97  Identities=16%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             eEEEEe---cC---CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy18018        145 VRCVQY---DG---KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT  218 (635)
Q Consensus       145 v~~l~~---~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  218 (635)
                      |+++++   ++   +.|+.|+.|..||+|+-+  +.+.+......+....... ..+++.+..+|+|-+|+-  .+.+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY~~--~~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG-GGRFAYALANGTVGVYDR--SQRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC-CCEEEEEecCCEEEEEeC--cceeee
Confidence            566666   32   589999999999999854  4455555555555544444 488999999999999974  444555


Q ss_pred             EeCCCCCeEEEEe-e-----CCEEEEeeCceeEEE
Q psy18018        219 LIGHTGGVWSSQM-A-----GNIIISGSTDRTLKG  247 (635)
Q Consensus       219 ~~~h~~~v~~~~~-~-----~~~l~s~~~dg~i~~  247 (635)
                      .+.... +.++.+ +     -..|++|-.+|.|-+
T Consensus        77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            554444 555544 3     237999999888753

>PHA02713 hypothetical protein; Provisional

Probab=97.36  E-value=0.04  Score=56.13  Aligned_cols=212  Identities=12%  Similarity=0.109  Sum_probs=115.5

Q ss_pred             eEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeCC------CcEEEEEccCCccee---------EEEEEeeCC
Q psy18018        364 SIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD------STVKVWDIVSGTKKL---------MFRICLFDG  426 (635)
Q Consensus       364 ~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~d------g~i~iwd~~~~~~~~---------~~~~~~~~~  426 (635)
                      .+..||..+.+-..  .+......-.....++...+.||.+      ..+..||..+.....         .......++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g  352 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD  352 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence            46778877654322  1211111122233345666666643      246677876653211         222345578


Q ss_pred             cEEEEEeCCC-----cEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCCC-----------------------
Q psy18018        427 VHVVSGSLDT-----SIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADS-----------------------  476 (635)
Q Consensus       427 ~~l~~~~~d~-----~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg-----------------------  476 (635)
                      +..+.|+.++     .+..||..+.+-..  .+............++.+.+.|+.++                       
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSN  432 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccc
Confidence            8888888754     47789987654322  22222222334456788888887653                       


Q ss_pred             cEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC------cEEEEECCC-CceeeeeccceecCceeEEec
Q psy18018        477 TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG------TVKLWDVKT-GEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       477 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~  549 (635)
                      .+..||..+.+-...-.... ..........+++..+.|+.++      .+..||..+ .+........          .
T Consensus       433 ~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~----------~  501 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE----------S  501 (557)
T ss_pred             eEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC----------c
Confidence            47788887654322111111 1222234555888888887542      367788887 4433211110          0


Q ss_pred             cCceecccccCCCeEEEEecCCC--eEEEEeCCCCceEEe
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDDG--TVKLWDVKTGEFIRN  587 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d~--~v~iwd~~~~~~~~~  587 (635)
                      .....++ ..-++++.++|+.++  .+..||+.+.+.-..
T Consensus       502 ~r~~~~~-~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        502 RLSALHT-ILHDNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             cccccee-EEECCEEEEEeeecceeehhhcCcccccccch
Confidence            0001111 112889999999888  788899888876533

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.31  E-value=0.1  Score=45.92  Aligned_cols=179  Identities=13%  Similarity=0.064  Sum_probs=108.9

Q ss_pred             cEEEEeCCCCceeeeeccCC-ccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEE
Q psy18018        437 SIRVWEAESGNLRHTLMGHQ-SLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVIT  514 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  514 (635)
                      .|+.+|+.+++......-.. ----++.. ++++....=.++...+||..+.+.+.++.-    ...=..++.|++.|+.
T Consensus        69 ~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt~dg~~Li~  144 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLTSDGKRLIM  144 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-----SSS--EEEECSSCEEE
T ss_pred             EEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec----CCcceEEEcCCCEEEE
Confidence            57777777777655443222 12234444 334555556788999999999999998873    4456778899988888


Q ss_pred             EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec--c
Q psy18018        515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL--D  592 (635)
Q Consensus       515 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~  592 (635)
                      ......++.+|.++.+....+.......++      ..++-+.+- +|.+.|=.-....|..-|..+|+....+..-  .
T Consensus       145 SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~  217 (264)
T PF05096_consen  145 SDGSSRLYFLDPETFKEVRTIQVTDNGRPV------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLR  217 (264)
T ss_dssp             E-SSSEEEEE-TTT-SEEEEEE-EETTEE---------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHH
T ss_pred             ECCccceEEECCcccceEEEEEEEECCEEC------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhh
Confidence            888889999999888777666543222221      124445554 7887777777778899999999988765311  0


Q ss_pred             --------CCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEEee
Q psy18018        593 --------SGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       593 --------~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~d~  630 (635)
                              ..+..+....+|+.|+.. ++++|-.=..    +|.+.+
T Consensus       218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~----lyeV~l  260 (264)
T PF05096_consen  218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK----LYEVKL  260 (264)
T ss_dssp             HHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE----EEEEEE
T ss_pred             hcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc----eEEEEE
Confidence                    011246789999987655 5555544443    555544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.31  E-value=0.15  Score=47.65  Aligned_cols=265  Identities=14%  Similarity=0.175  Sum_probs=110.5

Q ss_pred             EEEecCcEEEEecC---CCeEEEEEccCCceEEeeeCCCcce--eEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE-
Q psy18018        348 GFQFDGVHVVSGSL---DTSIRVWEAESGNLRHTLMGHQSLT--SGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI-  421 (635)
Q Consensus       348 ~~s~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~~v--~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  421 (635)
                      +|.++|+.|+-++.   ...+.+.|+.+++..+.-.+.....  ..++...+.++-......|+-.|+.+.+...+..+ 
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            47788877665544   4567777888887665444322212  23333355655555566788888888776555443 


Q ss_pred             ----------EeeCCcEEEEEeC----------------------CCcEEEEeCCCCceeeeeccCCccEEEEEe---cC
Q psy18018        422 ----------CLFDGVHVVSGSL----------------------DTSIRVWEAESGNLRHTLMGHQSLTSGMEL---RN  466 (635)
Q Consensus       422 ----------~~~~~~~l~~~~~----------------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~---~~  466 (635)
                                ...++..++-.-.                      ...|.-.|+.+|+....+. ....+.-+.+   ++
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence                      1223333322110                      1124445566655443333 2223333333   33


Q ss_pred             CEEEEEeC---CC-cEEEEECC-CCceeEEecCCCcccccEEEEEe---cCCEEEEEe-----CCCcEEEEECCCCceee
Q psy18018        467 NILVSGNA---DS-TVKVWDIV-SGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSS-----DDGTVKLWDVKTGEFST  533 (635)
Q Consensus       467 ~~l~s~~~---dg-~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~-----~d~~i~vwd~~~~~~~~  533 (635)
                      .+++-|-+   +. .-+||-+. ++...+.+...  ....+..=.|   ||..+.--+     .+..|.-+|..+++...
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            44444332   22 13556443 34444444431  1222222222   666554322     24456667777765432


Q ss_pred             eeccceecCceeEEeccCceecccccCCCeEEEEecCCC----------------eEEEEeCCCCceEEeeeecc-----
Q psy18018        534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG----------------TVKLWDVKTGEFIRNLVSLD-----  592 (635)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----------------~v~iwd~~~~~~~~~~~~~~-----  592 (635)
                      ...             ......+..++||++++-=+.|.                .|++++++.++... +..+.     
T Consensus       279 ~~~-------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v  344 (386)
T PF14583_consen  279 LME-------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKV  344 (386)
T ss_dssp             EEE-------------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------
T ss_pred             EEe-------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCccee
Confidence            111             12333455678999887533332                56778888766532 21110     


Q ss_pred             CCCC-CceEEEEEeCCCCeE-EEEccCCCeeEeEEEEEeee
Q psy18018        593 SGGS-GGVVWRIRASETKLV-CAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       593 ~~~~-~~~i~~l~~s~d~~~-l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ..++ ...=....|||||++ |......|.  ..||..++-
T Consensus       345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~--~~vY~v~i~  383 (386)
T PF14583_consen  345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGP--PAVYLVEIP  383 (386)
T ss_dssp             BTTBSSTT----EE-TTSSEEEEEE-TTSS---EEEEEE--
T ss_pred             ecCCCccCCCCCccCCCCCEEEEECCCCCC--ccEEEEeCc
Confidence            0011 111356789999995 456667777  556666543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.29  E-value=0.071  Score=46.90  Aligned_cols=183  Identities=12%  Similarity=0.064  Sum_probs=112.9

Q ss_pred             ceeEEEE-eC-CEEEEEeCCC--cEEEEEccCCcceeEEEE---------EeeCCcEEEEEeCCCcEEEEeCCCCceeee
Q psy18018        385 LTSGMEL-RN-NILVSGNADS--TVKVWDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHT  451 (635)
Q Consensus       385 ~v~~l~~-~~-~~l~s~~~dg--~i~iwd~~~~~~~~~~~~---------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  451 (635)
                      -...+.+ .+ .++-+.+.-|  .|+.+|+.+++......+         ...+++.....-.++...+||..+.+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence            4567777 44 4445555555  688888888876554443         222455555566788999999999888887


Q ss_pred             eccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCC--cccccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018        452 LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRN--KHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       452 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      +.- .+.-.+++.+++.|+.......++++|..+.+..+.+....  ..-..+.-+.+ +|...|=.=....|...|..+
T Consensus       126 ~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  126 FPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             EE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             Eec-CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence            753 34556778888888888888889999999888877776521  11224556666 677777666677788889999


Q ss_pred             CceeeeeccceecCce----eEEeccCceecccccCCCe-EEEEe
Q psy18018        529 GEFSTPLMSSFILNPF----YFLIYSQPLLCPHLQFNSR-FVITS  568 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~-~l~~~  568 (635)
                      |+....+.........    .......-.+.+|+.|..+ +++||
T Consensus       205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            9988766433221110    0011134578899987654 55555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.28  E-value=0.029  Score=54.39  Aligned_cols=180  Identities=15%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             EEEeeCCcEEEEEe---CC-CcEEEEeCCCCceeeeec-cCCccEEEEEecCCE-EEEEeCCCc--EEEEECCCCceeEE
Q psy18018        420 RICLFDGVHVVSGS---LD-TSIRVWEAESGNLRHTLM-GHQSLTSGMELRNNI-LVSGNADST--VKVWDIVSGQCLQT  491 (635)
Q Consensus       420 ~~~~~~~~~l~~~~---~d-~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~-l~s~~~dg~--i~iwd~~~~~~~~~  491 (635)
                      ..++++++.++...   .. ..+.++++.+++....+. ........++++++. +++...||.  |+++|+..+.. ..
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~  276 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PR  276 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-ee
Confidence            34556666544432   22 458888888876655444 122334456667774 455566665  56667776663 33


Q ss_pred             ecCCCcccccEEEEEecCCEEEEEeC-CCc--EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        492 LSGRNKHQSAVTCLQFNSRFVITSSD-DGT--VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~~~~~l~~~~~-d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      +....+... -.++..||++++-.+. .|.  |.+++.+..... .+..           ....-..-.+||||++|+..
T Consensus       277 Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~-----------~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         277 LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTF-----------SGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeec-----------cCCCCcCccCCCCCCEEEEE
Confidence            443222222 3445558888776654 343  666666655431 1111           11112266799999999887


Q ss_pred             cCC-Ce--EEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        569 SDD-GT--VKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       569 ~~d-~~--v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      +.. |.  |.+.|+.++..++.+.      .......-.|.++|+.+...+..+
T Consensus       344 ~~~~g~~~i~~~~~~~~~~~~~lt------~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         344 SSSGGQWDIDKNDLASGGKIRILT------STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             eccCCceeeEEeccCCCCcEEEcc------ccccCCCCCcCCCCceEEEeccCC
Confidence            643 43  7788887777544442      222233445566666555444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.28  E-value=0.18  Score=49.29  Aligned_cols=223  Identities=11%  Similarity=0.124  Sum_probs=108.2

Q ss_pred             CCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE----EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC
Q psy18018        382 HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF----RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH  455 (635)
Q Consensus       382 ~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  455 (635)
                      .......+.++  +.++++ ..+|...++.....+....-    .++.+ .+.+++-..+++|.++.--+.+....+...
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~  108 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP  108 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcCC
Confidence            34456677776  445555 77788888875433332222    13455 445666666888888632222222223221


Q ss_pred             CccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceee
Q psy18018        456 QSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFST  533 (635)
Q Consensus       456 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~  533 (635)
                       ..+..+-. |.+|...+.+ .|.+||..+++.++.+..     .+|..+.|+  +.+++..+.+ .+.+++........
T Consensus       109 -~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~  179 (443)
T PF04053_consen  109 -FSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA  179 (443)
T ss_dssp             -S-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred             -cccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence             12333333 7777766655 799999999999999974     247888894  7888888765 58887765431111


Q ss_pred             eeccceecCceeEEec-cCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEE
Q psy18018        534 PLMSSFILNPFYFLIY-SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVC  612 (635)
Q Consensus       534 ~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  612 (635)
                       .........+....- ...|.+.+|..| -++.|.. . .++-  +-.|+. ..+.     ..+.++.=+...|+...|
T Consensus       180 -~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~-~~i~-----~ld~~~yllgy~~~~~~l  247 (443)
T PF04053_consen  180 -IPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKY--LVNGET-GIIA-----HLDKPLYLLGYLPKENRL  247 (443)
T ss_dssp             -BTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEE--EETTEE-EEEE-----E-SS--EEEEEETTTTEE
T ss_pred             -ccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCCc-ceEE-----EcCCceEEEEEEccCCEE
Confidence             111111112222222 567888888766 4444433 3 6766  344442 3332     124567788888877888


Q ss_pred             EEccCCCeeEeEEEEEe
Q psy18018        613 AVGSRNGTEETKLLVLD  629 (635)
Q Consensus       613 ~~~~~dg~~~~~l~~~d  629 (635)
                      .....|+.  +..+.+|
T Consensus       248 y~~Dr~~~--v~~~~ld  262 (443)
T PF04053_consen  248 YLIDRDGN--VISYELD  262 (443)
T ss_dssp             EEE-TT----EEEEE--
T ss_pred             EEEECCCC--EEEEEEC
Confidence            88888887  3444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.27  E-value=0.001  Score=39.06  Aligned_cols=37  Identities=41%  Similarity=0.741  Sum_probs=32.4

Q ss_pred             CeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEe
Q psy18018        132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN  168 (635)
Q Consensus       132 ~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd  168 (635)
                      +++...+..|...|.++.|  ++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4567778889999999999  578999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1897|consensus

Probab=97.26  E-value=0.31  Score=50.48  Aligned_cols=136  Identities=16%  Similarity=0.208  Sum_probs=88.1

Q ss_pred             CCEEEEEe----------CCCcEEEEECCCCceeEEecCCCcccccEEEEE-ecCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018        466 NNILVSGN----------ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ-FNSRFVITSSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       466 ~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~  534 (635)
                      +.++++|.          ..|.|.++...+.+.++...... -.+.+.++. |+|+++|.-  ...|++|+..+.+.+..
T Consensus       787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~  863 (1096)
T KOG1897|consen  787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRI  863 (1096)
T ss_pred             ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhhCCeEEEec--CcEEEEEEccccceehh
Confidence            34666665          35788888887744444443211 334444444 488888765  45799999998865544


Q ss_pred             eccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC--CceEEeeeeccCCCCCceEEEEEeCCCCeEE
Q psy18018        535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT--GEFIRNLVSLDSGGSGGVVWRIRASETKLVC  612 (635)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  612 (635)
                      ...           +..++..+.+.-.|..+++|.-=+.+.+.-.+.  |.....-+    .-+...++++.+-.+..+|
T Consensus       864 e~~-----------~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr----D~~p~Wmtaveil~~d~yl  928 (1096)
T KOG1897|consen  864 ECN-----------ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR----DYNPNWMTAVEILDDDTYL  928 (1096)
T ss_pred             hhc-----------ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh----hhCccceeeEEEecCceEE
Confidence            433           456777788888899999998777776655443  33433322    3566788898887766665


Q ss_pred             EEccCCCe
Q psy18018        613 AVGSRNGT  620 (635)
Q Consensus       613 ~~~~~dg~  620 (635)
                      . +..+|.
T Consensus       929 g-ae~~gN  935 (1096)
T KOG1897|consen  929 G-AENSGN  935 (1096)
T ss_pred             e-eccccc
Confidence            4 566665

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.24  E-value=0.011  Score=60.90  Aligned_cols=133  Identities=12%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             eCCCcEEEEECCCCceeEEecCCCcccccEEEEEec-------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCcee
Q psy18018        473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY  545 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  545 (635)
                      .....++-.|+..|+.+.++...  ...+|..++.+       +...+.|-.+..+..||.+-.... .....     ..
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~--~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~-----~k  572 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVH--DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQ-----SK  572 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecC--CCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecc-----cc
Confidence            45678999999999999999872  22347777773       345667777888999998854310 01100     00


Q ss_pred             EEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        546 FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      ........+|++-+.+| +||+|+.+|.||+||- .|+.-++..    ++.+.+|..|..+.||++|++.+..-
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l----p~lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL----PGLGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC----CCCCCCeeEEEecCCCcEEEEeecce
Confidence            01223455666666555 6788999999999993 443322221    46789999999999999988777754

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4441|consensus

Probab=97.22  E-value=0.061  Score=54.69  Aligned_cols=224  Identities=16%  Similarity=0.215  Sum_probs=128.6

Q ss_pred             CCEEEEEeCC------CcEEEEEccCCccee---------EEEEEeeCCcEEEEEeCC------CcEEEEeCCCCceee-
Q psy18018        393 NNILVSGNAD------STVKVWDIVSGTKKL---------MFRICLFDGVHVVSGSLD------TSIRVWEAESGNLRH-  450 (635)
Q Consensus       393 ~~~l~s~~~d------g~i~iwd~~~~~~~~---------~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~-  450 (635)
                      +.+++.|+.+      ..+..+|..++....         .......++...++|+.|      .++..||..+++-.. 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            4455566655      356677776663322         222355678888899988      357778887765332 


Q ss_pred             -eeccCCccEEEEEecCCEEEEEeCCCc-----EEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC-----
Q psy18018        451 -TLMGHQSLTSGMELRNNILVSGNADST-----VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG-----  519 (635)
Q Consensus       451 -~~~~~~~~v~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-----  519 (635)
                       .+............++.+.++|+.||.     +..||..+.+--..-.... .........+++...++|+.++     
T Consensus       365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCL  443 (571)
T ss_pred             CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCcccc
Confidence             222233344445568889999999975     7788877654222221111 3444555666899999999664     


Q ss_pred             -cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC-----eEEEEeCCCCceEEeeeeccC
Q psy18018        520 -TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG-----TVKLWDVKTGEFIRNLVSLDS  593 (635)
Q Consensus       520 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~  593 (635)
                       ++..||..+++............          -.. .-.-++.+.+.||.|+     +|..||..+.+....-..   
T Consensus       444 ~sve~YDP~t~~W~~~~~M~~~R~----------~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---  509 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPMNTRRS----------GFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM---  509 (571)
T ss_pred             ceEEEEcCCCCceeecCCcccccc----------cce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC---
Confidence             46778887776443222110000          001 1223788889998886     388899988876544211   


Q ss_pred             CCCCceEEEEEeCCCCeEEEEccCCCee-EeEEEEEeeecC
Q psy18018        594 GGSGGVVWRIRASETKLVCAVGSRNGTE-ETKLLVLDFDVD  633 (635)
Q Consensus       594 ~~~~~~i~~l~~s~d~~~l~~~~~dg~~-~~~l~~~d~~~~  633 (635)
                      ......+ .++ .-+++..++|+.||.- .-.+-.||++.|
T Consensus       510 ~~~rs~~-g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  510 TSPRSAV-GVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ccccccc-cEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence            1111111 122 2357777788887753 223445565554

>KOG3617|consensus

Probab=97.15  E-value=0.0014  Score=65.18  Aligned_cols=103  Identities=15%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             cCCEEEEEe----CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCc
Q psy18018        508 NSRFVITSS----DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE  583 (635)
Q Consensus       508 ~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~  583 (635)
                      ...++++++    ..|.|.||- .+|+.....            .+.-.++++||+|..-.|+.|-.-|.+.+|...+.+
T Consensus        26 sePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------------t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   26 SEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------------TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             CCceeEEEEecCCCCceEEEEe-cCCCCCccc------------ccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            455666655    457788874 455522221            124456789999999999999999999999988777


Q ss_pred             eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        584 FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       584 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      .-...     ..|..+|..+.|||+|..|+++..=|.  +.+|.+|.
T Consensus        93 ~htv~-----~th~a~i~~l~wS~~G~~l~t~d~~g~--v~lwr~d~  132 (1416)
T KOG3617|consen   93 THTVV-----ETHPAPIQGLDWSHDGTVLMTLDNPGS--VHLWRYDV  132 (1416)
T ss_pred             eeeec-----cCCCCCceeEEecCCCCeEEEcCCCce--eEEEEeee
Confidence            54444     579999999999999999999999997  88898884

>KOG2079|consensus

Probab=97.15  E-value=0.0034  Score=64.54  Aligned_cols=117  Identities=15%  Similarity=0.269  Sum_probs=83.8

Q ss_pred             cccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       499 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      ...+.+.+.-+..++.|++-|.+...|....  +.++...        .....+|++++|+.||++++.|-.+|.|.+||
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~n--------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D  158 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGN--LGPLHQN--------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWD  158 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhcc--cchhhcC--------CccCCcceeeEecCCCceeccccCCCcEEEEE
Confidence            3455666667788999999999999887754  1111110        01367899999999999999999999999999


Q ss_pred             CCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        579 VKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +..++.++.+.... .++.+ |.-+.+..++..+.++..-|.    +|.+-+.
T Consensus       159 ~~~~k~l~~i~e~~-ap~t~-vi~v~~t~~nS~llt~D~~Gs----f~~lv~n  205 (1206)
T KOG2079|consen  159 MHRAKILKVITEHG-APVTG-VIFVGRTSQNSKLLTSDTGGS----FWKLVFN  205 (1206)
T ss_pred             ccCCcceeeeeecC-Cccce-EEEEEEeCCCcEEEEccCCCc----eEEEEec
Confidence            99999988885432 13333 444444555668888988886    6766544

>PHA02713 hypothetical protein; Provisional

Probab=97.14  E-value=0.026  Score=57.43  Aligned_cols=182  Identities=10%  Similarity=0.182  Sum_probs=106.6

Q ss_pred             EEecCcEEEEecCC------CeEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeCCC-----cEEEEEccCCcc
Q psy18018        349 FQFDGVHVVSGSLD------TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADS-----TVKVWDIVSGTK  415 (635)
Q Consensus       349 ~s~~~~~l~~~~~d------g~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~dg-----~i~iwd~~~~~~  415 (635)
                      ...++..+++|+.+      ..+..||..+..-..  .+.............+...+.||.++     .+..||..+.+.
T Consensus       300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             EEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            33477777777753      347788877654321  11112223334445566777777654     477888876532


Q ss_pred             ee---------EEEEEeeCCcEEEEEeCCC-----------------------cEEEEeCCCCcee--eeeccCCccEEE
Q psy18018        416 KL---------MFRICLFDGVHVVSGSLDT-----------------------SIRVWEAESGNLR--HTLMGHQSLTSG  461 (635)
Q Consensus       416 ~~---------~~~~~~~~~~~l~~~~~d~-----------------------~i~~~d~~~~~~~--~~~~~~~~~v~~  461 (635)
                      ..         .......+++..+.|+.++                       .+..||..+.+-.  ..+.........
T Consensus       380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~  459 (557)
T PHA02713        380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV  459 (557)
T ss_pred             EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence            22         1123445777777777542                       4777887765432  222222222234


Q ss_pred             EEecCCEEEEEeCC------CcEEEEECCC-Cc--eeEEecCCCcccccEEEEEecCCEEEEEeCCC--cEEEEECCCCc
Q psy18018        462 MELRNNILVSGNAD------STVKVWDIVS-GQ--CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG--TVKLWDVKTGE  530 (635)
Q Consensus       462 ~~~~~~~l~s~~~d------g~i~iwd~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~--~i~vwd~~~~~  530 (635)
                      ...++.+.+.|+.+      ..+..||..+ .+  .+..+..   ..........+++..++|+.|+  .+..||..+.+
T Consensus       460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~---~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES---RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc---ccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence            45677777788754      2467899886 33  2233332   3444555666899999999888  77788888777


Q ss_pred             eee
Q psy18018        531 FST  533 (635)
Q Consensus       531 ~~~  533 (635)
                      ...
T Consensus       537 W~~  539 (557)
T PHA02713        537 WNH  539 (557)
T ss_pred             ccc
Confidence            543

>KOG2444|consensus

Probab=97.10  E-value=0.0016  Score=54.41  Aligned_cols=137  Identities=17%  Similarity=0.060  Sum_probs=82.0

Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEe-eCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceee-ccccceeEEeee--c
Q psy18018        115 LVSGSRDATLRVWHIESGECLHVL-VGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHA-ELQETEVELSHG--Y  190 (635)
Q Consensus       115 l~~~~~dg~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~--~  190 (635)
                      +...+.+|.+.-+++...+....- .-|... ..+.--+..++.|+.+|.|.+|+....-.... .......+.+..  .
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~  111 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG  111 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence            445566777777666543322111 112222 22222577899999999999999873222211 111111221111  1


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-CCeEEEEe--eCCEEEEe--eCceeEEEecccc
Q psy18018        191 ALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT-GGVWSSQM--AGNIIISG--STDRTLKGWSNAE  252 (635)
Q Consensus       191 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~--~~~~l~s~--~~dg~i~~w~~~~  252 (635)
                      ..+.+..+++.+|.|+.|++.-++.+.....|. .++..+..  .+..+..+  |.|..++.|++..
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            224588899999999999999888888777777 44443333  35666666  7778888887764

>smart00320 WD40 WD40 repeats

Probab=97.08  E-value=0.00097  Score=39.20  Aligned_cols=36  Identities=47%  Similarity=0.752  Sum_probs=30.1

Q ss_pred             CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      ++...+..|...+ .++.|.  ++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPV-TSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCce-eEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456677888877 899998  78999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.08  E-value=0.22  Score=47.04  Aligned_cols=194  Identities=14%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             EeeCCcEEEEEe------CCCcEEEEeCCCCceeeeeccCCc---cEEEEEec--CCEEEEEe-----------------
Q psy18018        422 CLFDGVHVVSGS------LDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGN-----------------  473 (635)
Q Consensus       422 ~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~~--~~~l~s~~-----------------  473 (635)
                      +.|+|+.++++-      ..|-+.++|-++.+..........   .-..+.+.  .+.++|..                 
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            445666666642      224577777776666655543222   11223332  33555543                 


Q ss_pred             ---CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--c--CCE-EEEEeCCCcEEEEEC-CCCceeeeeccceecCce
Q psy18018        474 ---ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N--SRF-VITSSDDGTVKLWDV-KTGEFSTPLMSSFILNPF  544 (635)
Q Consensus       474 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~-l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~  544 (635)
                         .-.++.+||+.+.+.++.+..... ......+.|  +  ..+ ++.+.-..+|..|-- +.++...+........++
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~-g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEE-GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TT-EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCC-CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence               245799999999999999886332 233455666  3  222 333333444544433 444322221111111100


Q ss_pred             e----------EEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCce---EEeeee-----------ccCCCCCce
Q psy18018        545 Y----------FLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEF---IRNLVS-----------LDSGGSGGV  599 (635)
Q Consensus       545 ~----------~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~---~~~~~~-----------~~~~~~~~~  599 (635)
                      .          +.+...-|+.+.+|.|.++|.... ..|.|+.||+++-..   ..++..           +......+.
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg  375 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG  375 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence            0          011135678999999999887765 689999999987433   333210           000112334


Q ss_pred             EEEEEeCCCCeEEEEcc
Q psy18018        600 VWRIRASETKLVCAVGS  616 (635)
Q Consensus       600 i~~l~~s~d~~~l~~~~  616 (635)
                      ..-|..|-||+.|.+..
T Consensus       376 PqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  376 PQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---EEE-TTSSEEEEE-
T ss_pred             CCeEEEccCCeEEEEEe
Confidence            57788999999888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.03  E-value=0.18  Score=48.27  Aligned_cols=42  Identities=7%  Similarity=0.010  Sum_probs=36.2

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL  385 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~  385 (635)
                      ...++.+|++++.++...=|.|.++|+.++..++.+++..+.
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA  351 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA  351 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence            445788999999999888899999999999999999887663

>KOG4640|consensus

Probab=96.96  E-value=0.0025  Score=61.41  Aligned_cols=74  Identities=14%  Similarity=0.142  Sum_probs=62.6

Q ss_pred             cCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEE-EEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVW-RIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      ...+.-+.|+|.-.++|++..+|.|.+..+. .+.+.++     +-++..++ +++|.|||+.||+|-.||+    |-..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-----p~p~~~v~~sL~W~~DGkllaVg~kdG~----I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-----PIPGENVTASLCWRPDGKLLAVGFKDGT----IRLH   89 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-----cCCCCccceeeeecCCCCEEEEEecCCe----EEEE
Confidence            4467788999999999999999999999998 7778888     33555666 9999999999999999998    6667


Q ss_pred             eeecC
Q psy18018        629 DFDVD  633 (635)
Q Consensus       629 d~~~~  633 (635)
                      |.+.+
T Consensus        90 Dve~~   94 (665)
T KOG4640|consen   90 DVEKG   94 (665)
T ss_pred             EccCC
Confidence            76654

>KOG4640|consensus

Probab=96.92  E-value=0.0044  Score=59.79  Aligned_cols=93  Identities=11%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             cccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCcee-cccccCCCeEEEEecCCCeEE
Q psy18018        499 QSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL-CPHLQFNSRFVITSSDDGTVK  575 (635)
Q Consensus       499 ~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~v~  575 (635)
                      ...+..+.|+  -.++|++..+|.+.+..+. .+.+..+..           +..+++ +++|.|||++||+|-.||+|+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----------p~~~v~~sL~W~~DGkllaVg~kdG~I~   87 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----------PGENVTASLCWRPDGKLLAVGFKDGTIR   87 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----------CCCccceeeeecCCCCEEEEEecCCeEE
Confidence            3456667775  4679999999999888887 555555442           345555 999999999999999999999


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      +-|++++..+....    ......|.++-|++
T Consensus        88 L~Dve~~~~l~~~~----~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEKGGRLVSFL----FSVETDISKGIWDR  115 (665)
T ss_pred             EEEccCCCceeccc----cccccchheeeccc
Confidence            99999999888752    23456788888863

>PHA03098 kelch-like protein; Provisional

Probab=96.92  E-value=0.086  Score=54.03  Aligned_cols=180  Identities=13%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             cEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeEEecCCCcccccEEEEEecC
Q psy18018        437 SIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS  509 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  509 (635)
                      .+..||..+.+....  +............++.+++.||.+     ..+..||..+.+-...-..+. ..........++
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~~~  390 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNVNN  390 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEECC
Confidence            456677665543221  111112233445577777888765     347788887654322111111 122223344578


Q ss_pred             CEEEEEeCC------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC--------CeEE
Q psy18018        510 RFVITSSDD------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD--------GTVK  575 (635)
Q Consensus       510 ~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~v~  575 (635)
                      +.++.|+.+      ..+..||..+++.......     +...   .   ...+...++++.+.|+.+        ..+.
T Consensus       391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r---~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  459 (534)
T PHA03098        391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL-----PISH---Y---GGCAIYHDGKIYVIGGISYIDNIKVYNIVE  459 (534)
T ss_pred             EEEEECCcCCCCcccceEEEEeCCCCeeeecCCC-----Cccc---c---CceEEEECCEEEEECCccCCCCCcccceEE
Confidence            888888732      3588899887654332111     0000   0   011222367777777653        2388


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee-EeEEEEEeeecC
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE-ETKLLVLDFDVD  633 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~-~~~l~~~d~~~~  633 (635)
                      +||..+++....- .... + ......+.+  ++++++.|+.++.. .-.++.||++.+
T Consensus       460 ~yd~~~~~W~~~~-~~~~-~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        460 SYNPVTNKWTELS-SLNF-P-RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EecCCCCceeeCC-CCCc-c-cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            9999887765332 1111 1 111112222  78888888876431 234788887754

>KOG4499|consensus

Probab=96.87  E-value=0.029  Score=47.26  Aligned_cols=99  Identities=14%  Similarity=0.104  Sum_probs=63.0

Q ss_pred             EEEEEc---CCEEEEeeCCCcEEEEE--CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEe
Q psy18018         85 TCLQFS---GSRIVSGSDDNTLKVWS--ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGA  159 (635)
Q Consensus        85 ~~~~~s---~~~l~s~~~d~~v~vWd--~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~  159 (635)
                      +.++|+   .++-++-+.+-+|.-||  ..+|.       ..+.=.++|++..++...+....   .+|.-+|++.+++-
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~-------~snr~~i~dlrk~~~~e~~~PDG---m~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD-------LSNRKVIFDLRKSQPFESLEPDG---MTIDTEGNLYVATF  230 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCccc-------ccCcceeEEeccCCCcCCCCCCc---ceEccCCcEEEEEe
Confidence            456666   34445566677777777  44433       23344455655543332222211   12233788889999


Q ss_pred             CCCeEEEEeCCCccceeeccccceeEEeeeccCC
Q psy18018        160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALR  193 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (635)
                      ..++|...|+.+|+.+.++..+...+.+++|-..
T Consensus       231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            9999999999999999998888777777666543

>KOG4499|consensus

Probab=96.87  E-value=0.23  Score=42.13  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=39.8

Q ss_pred             EEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCC
Q psy18018        461 GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR  510 (635)
Q Consensus       461 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  510 (635)
                      ++.-+|++.++.-..++|.-.|+.+|+.+.++..   ....|+|++|.|+
T Consensus       218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFgGk  264 (310)
T KOG4499|consen  218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFGGK  264 (310)
T ss_pred             eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence            3444788888888999999999999999999987   5778999999654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.85  E-value=0.0021  Score=39.31  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             cCceecccccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                      ...|.+++|+|...+||.+..+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457899999999999999999999999999 56544

>KOG2444|consensus

Probab=96.85  E-value=0.0021  Score=53.76  Aligned_cols=143  Identities=12%  Similarity=0.071  Sum_probs=83.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEE
Q psy18018        468 ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFL  547 (635)
Q Consensus       468 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  547 (635)
                      .+...+.||.++-++++..+....-..  .+... ..+.--+.-+++|+.+|.|++|..............         
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~--~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---------   99 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSER--FIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---------   99 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhh--hhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhc---------
Confidence            455667888888887764322111110  02222 223334677999999999999987722111111000         


Q ss_pred             eccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCC-ceEEEEEeCCCCeEEEEc--cCCCeeEeE
Q psy18018        548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSG-GVVWRIRASETKLVCAVG--SRNGTEETK  624 (635)
Q Consensus       548 ~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~i~~l~~s~d~~~l~~~--~~dg~~~~~  624 (635)
                      ....-...+.--.++.+..+++.||.|+.|+++-++.+...     ..|. .++..+..+..++.|+.+  +.|..  ++
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~--~k  172 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-----GQHNFESGEELIVVGSDEFLKIADTSHDRV--LK  172 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCceeeee-----ccccCCCcceeEEecCCceEEeeccccchh--hh
Confidence            00111111222235668899999999999999998888776     4555 556666666667777766  66655  45


Q ss_pred             EEEEe
Q psy18018        625 LLVLD  629 (635)
Q Consensus       625 l~~~d  629 (635)
                      .|.++
T Consensus       173 ~W~ve  177 (238)
T KOG2444|consen  173 KWNVE  177 (238)
T ss_pred             hcchh
Confidence            55443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.84  E-value=0.086  Score=46.68  Aligned_cols=171  Identities=12%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             eeccCCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018        451 TLMGHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       451 ~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd  525 (635)
                      .+.+-...+.++++++  + ++++....+.|..++. +|+.++.+....  ....-.+++  ++.++++.-.++.+.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g--~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG--FGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS---SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC--CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            4556566789999964  3 7778888899988996 488888876522  345667777  455555555689999999


Q ss_pred             CCCCceeeeec--cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC---CceEEeee--ecc-CCCCC
Q psy18018        526 VKTGEFSTPLM--SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT---GEFIRNLV--SLD-SGGSG  597 (635)
Q Consensus       526 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~--~~~-~~~~~  597 (635)
                      +..........  ......  ....++..+-.++|+|.++.|+.+-+..-..||.+..   ...+....  .+. .....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~--~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLG--FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             E----TT--EEEEEEEE-----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             EeccccccchhhceEEecc--cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            85432111110  000000  0012455688999999877777777777777777654   22222111  111 12234


Q ss_pred             ceEEEEEeCCC-CeEEEEccCCCeeEeEEEEEee
Q psy18018        598 GVVWRIRASET-KLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       598 ~~i~~l~~s~d-~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      ..+.++++.|. |.+++...++..    |..+|.
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~----l~~~d~  200 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRL----LLELDR  200 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTE----EEEE-T
T ss_pred             ccccceEEcCCCCeEEEEECCCCe----EEEECC
Confidence            45788999886 456666666654    666663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2395|consensus

Probab=96.71  E-value=0.028  Score=53.36  Aligned_cols=140  Identities=12%  Similarity=0.218  Sum_probs=91.4

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCc-cEEEEEec-------CCEEEEEeCCCcEEEEECCCCc--eeEEecCC-Cc
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS-LTSGMELR-------NNILVSGNADSTVKVWDIVSGQ--CLQTLSGR-NK  497 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~  497 (635)
                      +..+.....++-.|++.|+.+.+..-+.. .+..+.++       +..-+.|-.|..|.-||++-..  .+...+++ ..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            44455667788899999999999888776 33333332       2234556678889999987322  12222221 11


Q ss_pred             ccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        498 HQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       498 ~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      ....-.|++. ...++++||.+|.||+||. .+..-++..+          ....+|+.+..+.||++|+..+ +.++.+
T Consensus       429 ~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP----------gLG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  429 TKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP----------GLGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             cccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc----------ccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            2234455555 5778999999999999997 3432222221          2477899999999999988554 667777


Q ss_pred             EeCC
Q psy18018        577 WDVK  580 (635)
Q Consensus       577 wd~~  580 (635)
                      -++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            7753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.63  E-value=0.62  Score=44.68  Aligned_cols=62  Identities=13%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             EecCcEEEEec---------CCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCC
Q psy18018        350 QFDGVHVVSGS---------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG  413 (635)
Q Consensus       350 s~~~~~l~~~~---------~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~  413 (635)
                      |||+++++...         ..+.+.+||+.+++....... ...+....|+  ++.++.. .++.|.+.+..++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCC
Confidence            45666666532         246788999998765544333 4566666666  4555554 3567888876554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.56  E-value=0.51  Score=41.90  Aligned_cols=182  Identities=14%  Similarity=0.099  Sum_probs=88.4

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccC-CccEEEEEec-CCEEEEEe-CCCcEEEEECCCCc------eeEEec--CCCc
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGH-QSLTSGMELR-NNILVSGN-ADSTVKVWDIVSGQ------CLQTLS--GRNK  497 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~------~~~~~~--~~~~  497 (635)
                      +++....+.|..++. +|+.+.++.-. .+..-++.+- ++.++... .++.+.++++....      ....+.  ....
T Consensus        37 faV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~  115 (248)
T PF06977_consen   37 FAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNK  115 (248)
T ss_dssp             EEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S--
T ss_pred             EEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccC
Confidence            344445556666665 36666655432 2345566663 34444444 58889998884321      112222  2223


Q ss_pred             ccccEEEEEec--CCEEEEEeCCCcEEEEECCC---CceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecCC
Q psy18018        498 HQSAVTCLQFN--SRFVITSSDDGTVKLWDVKT---GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDD  571 (635)
Q Consensus       498 ~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d  571 (635)
                      ++..+-.++||  ++.|+.+-+..-..+|.+..   ..............   ...+...+.+++++|. +.+++....+
T Consensus       116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~S~l~~~p~t~~lliLS~es  192 (248)
T PF06977_consen  116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD---DKLFVRDLSGLSYDPRTGHLLILSDES  192 (248)
T ss_dssp             -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH----HT--SS---EEEEETTTTEEEEEETTT
T ss_pred             CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc---ccceeccccceEEcCCCCeEEEEECCC
Confidence            55668899995  46666666666667776654   11111111100000   0012335677888885 6788888899


Q ss_pred             CeEEEEeCCCCceEEeeeeccCCCC-----CceEEEEEeCCCCeEEEEcc
Q psy18018        572 GTVKLWDVKTGEFIRNLVSLDSGGS-----GGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       572 ~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~i~~l~~s~d~~~l~~~~  616 (635)
                      ..|..+| .+|+.+..+. +....+     -...-.|+|.++|++.++.-
T Consensus       193 ~~l~~~d-~~G~~~~~~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  193 RLLLELD-RQGRVVSSLS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             TEEEEE--TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             CeEEEEC-CCCCEEEEEE-eCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence            9999999 6788766553 222111     13467899999997766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079|consensus

Probab=96.55  E-value=0.067  Score=55.61  Aligned_cols=219  Identities=14%  Similarity=0.179  Sum_probs=117.8

Q ss_pred             ceeEEEEeCCEEEEEeCCCcEEEEEccCC----------cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc
Q psy18018        385 LTSGMELRNNILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  454 (635)
Q Consensus       385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  454 (635)
                      .+.+.+.-...++.++..|.+...|....          ........++.+|..++.|-.+|.|.+||...+++.+.+..
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            44445555667888888888777766542          22334456788999999999999999999999999999888


Q ss_pred             CCccEEEEEe----c-CCEEEEEeCCCcEEEEECCCCceeEEecC------CCcccccEEEEEe-cCCEE----------
Q psy18018        455 HQSLTSGMEL----R-NNILVSGNADSTVKVWDIVSGQCLQTLSG------RNKHQSAVTCLQF-NSRFV----------  512 (635)
Q Consensus       455 ~~~~v~~~~~----~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~v~~~~~-~~~~l----------  512 (635)
                      |..+.+++-+    + +..++++..-|.  +|.+.=.+..-....      ..+..+.|.+... .+..+          
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk~~L~~~~~kskcl~sg~~g~Vis~s~i~~e~l~~~~v~hf~~  248 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVFNKALLNMNTDKSKCLLSGKNGEVISASPISDENLGSLLVSHFGF  248 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEechhhhcccchHHHHhhcCCCCceEecccCCcchhhhhheeeeeE
Confidence            8777766554    2 346778777776  555432111000000      0113444544444 11111          


Q ss_pred             EE-EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec
Q psy18018        513 IT-SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL  591 (635)
Q Consensus       513 ~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  591 (635)
                      ++ .....-+.++-+.      -.....+...+....|.-.+++..=+-.....++.+.++.+.+..+...+--.++...
T Consensus       249 v~L~p~~sIvt~fPi~------f~~q~pPa~v~~~~~~s~~ins~~ts~e~~~~ia~s~nNkL~v~sI~~sn~~~ql~~~  322 (1206)
T KOG2079|consen  249 VSLVPLSSIVTLFPIK------FMYQKPPAGVVGSGSHSKLINSDSTSVEEDVVIAASYNNKLVVKSIPNSNFYAQLQPR  322 (1206)
T ss_pred             EEeecccceeeecceE------EEEecCCCceeccccceeeeeccccccccceEEEEEeCCeEEEEEEecccceEEEeec
Confidence            11 1111122232211      0000000111111112222222221222334555666778999888776655555433


Q ss_pred             cCCCCCceEEEEEeCCCCeE
Q psy18018        592 DSGGSGGVVWRIRASETKLV  611 (635)
Q Consensus       592 ~~~~~~~~i~~l~~s~d~~~  611 (635)
                      ......+.+.++.|-+....
T Consensus       323 ~~~efa~Silsi~W~~s~~i  342 (1206)
T KOG2079|consen  323 REGEFAGSILSIHWRRSTGI  342 (1206)
T ss_pred             cccccccchhheeeeccccc
Confidence            33455678999999775443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.15  Score=47.07  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=80.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-c-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCcee
Q psy18018        468 ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-N-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY  545 (635)
Q Consensus       468 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  545 (635)
                      ++.+--..+.|.-|+..+++. ..+.    ....+.++.. + +..|+++ ..| +.+++.+++.....+.......+  
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~-~~~~----~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~--  109 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK-RVFP----SPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLP--  109 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce-EEEE----CCCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccCCCC--
Confidence            455555677788888776543 2222    2223343433 4 4444444 333 67777766655332222111111  


Q ss_pred             EEeccCceecccccCCCeEEEEecC-----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEE
Q psy18018        546 FLIYSQPLLCPHLQFNSRFVITSSD-----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV  614 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~  614 (635)
                          ....+.....|+|++-++...           -|.|+-+|. .+..++.+     ..+-..-..|+||||++.|..
T Consensus       110 ----~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         110 ----LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ----cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCcEEecCceEECCCCCEEEE
Confidence                234556778889998886554           133444443 46655555     233445568999999988888


Q ss_pred             ccCCCeeEeEEEEEeee
Q psy18018        615 GSRNGTEETKLLVLDFD  631 (635)
Q Consensus       615 ~~~dg~~~~~l~~~d~~  631 (635)
                      +.....   ++|.++++
T Consensus       180 aDT~~~---~i~r~~~d  193 (307)
T COG3386         180 ADTPAN---RIHRYDLD  193 (307)
T ss_pred             EeCCCC---eEEEEecC
Confidence            877653   58888776

>KOG1008|consensus

Probab=96.50  E-value=0.0011  Score=63.90  Aligned_cols=136  Identities=15%  Similarity=0.232  Sum_probs=80.8

Q ss_pred             cEEEEEeeCCCcEEEEeCCCCeE--EEEeeCCCcceEEEEe---cCCEEEEEe----CCCeEEEEeCCCcc--cee--ec
Q psy18018        112 KCLLVSGSRDATLRVWHIESGEC--LHVLVGHLAAVRCVQY---DGKLVVSGA----YDYMVKIWNPDTEE--CLH--AE  178 (635)
Q Consensus       112 ~~ll~~~~~dg~i~vwd~~~~~~--~~~l~~h~~~v~~l~~---~~~~l~s~~----~dg~v~iwd~~~~~--~~~--~~  178 (635)
                      ++++++|..+|.|.+-.+....-  -....+|..+.++++|   |...||.|-    .|..+.|||+.++-  +..  .+
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            45555666666666555443211  2234578889999999   677888874    46789999998772  111  11


Q ss_pred             cc-c-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCCCeEEEEe---eCCEEEEeeCceeEEEecc
Q psy18018        179 LQ-E-TEVELSHGYALRSRIVSGSDDNTLKVWSATTG-KCLRTLIGHTGGVWSSQM---AGNIIISGSTDRTLKGWSN  250 (635)
Q Consensus       179 ~~-~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~---~~~~l~s~~~dg~i~~w~~  250 (635)
                      .. . ......+...+...+++|.....++++|++.. .....+  .+..+..+..   .++++++-. ||.|.+||.
T Consensus       150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~  224 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT  224 (783)
T ss_pred             ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccc
Confidence            11 1 11112222244567778888889999998732 111111  2223334444   467777766 999999994

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.58  Score=41.36  Aligned_cols=219  Identities=8%  Similarity=0.068  Sum_probs=126.9

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCc---eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE--
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC--  422 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  422 (635)
                      .+.-.|++..++..+.-+.+.|+.+.+   ..............++.++++-..+..|+-+.+-|+............  
T Consensus       133 gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~  212 (370)
T COG5276         133 GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT  212 (370)
T ss_pred             EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec
Confidence            466678888888866567777876543   233344444455778889999999999999999999887665544432  


Q ss_pred             -------eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC--Cc--cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        423 -------LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH--QS--LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       423 -------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~--~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                             ++.+++......+.-+.+-|..+.+..+.+..-  +.  .++.+...+++...+..+.-+.+-|+.+..... 
T Consensus       213 g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spf-  291 (370)
T COG5276         213 GPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPF-  291 (370)
T ss_pred             CCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCc-
Confidence                   223333333333444555666555443333221  11  233456678888787777777777776532211 


Q ss_pred             ecCCCcccc-cEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        492 LSGRNKHQS-AVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       492 ~~~~~~~~~-~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      +...-...+ .-..+...+.++..+..+ +..+-+....+........           ..-+.+.+.+-+.+++.+...
T Consensus       292 l~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~-----------~ti~~s~~v~~~~q~~y~~d~  359 (370)
T COG5276         292 LSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSMMDKRPGR-----------PTIGQSCDVSVDTQIIYSTDY  359 (370)
T ss_pred             hhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChhhcccccCc-----------ceEeeecceEEEeeEEEEeec
Confidence            111111111 334455556666666655 4555565544432222111           112333344446677888888


Q ss_pred             CCeEEEEeC
Q psy18018        571 DGTVKLWDV  579 (635)
Q Consensus       571 d~~v~iwd~  579 (635)
                      ++-+.||+.
T Consensus       360 ~~gl~i~~~  368 (370)
T COG5276         360 NGGLSIIEY  368 (370)
T ss_pred             CCCEEEEEe
Confidence            888888875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.40  E-value=0.28  Score=47.75  Aligned_cols=138  Identities=17%  Similarity=0.182  Sum_probs=82.3

Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEE-EeCCCc--EEEEECCCCceeeeeccceecCceeEEeccCc
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVIT-SSDDGT--VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      ..+.++++.+++....+..  ........+++||+.|+. ...||.  |++.|+..++..+ +...           .+.
T Consensus       218 ~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~-----------~gi  283 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG-----------FGI  283 (425)
T ss_pred             ceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccC-----------Ccc
Confidence            4689999998876655542  123334456667776654 445554  6777887776332 2211           122


Q ss_pred             eecccccCCCeEEEEecCC-C--eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        553 LLCPHLQFNSRFVITSSDD-G--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      -+.-.|+|||++++-.+.. |  .|.++|.+.+.. ..+..   ......  .-.+||||++++..+..+-. +.+..+|
T Consensus       284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~---~~~~~~--~p~~SpdG~~i~~~~~~~g~-~~i~~~~  356 (425)
T COG0823         284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF---SGGGNS--NPVWSPDGDKIVFESSSGGQ-WDIDKND  356 (425)
T ss_pred             ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec---cCCCCc--CccCCCCCCEEEEEeccCCc-eeeEEec
Confidence            2255799999988876543 3  477778776654 33321   111111  67789999999988854221 5666666


Q ss_pred             eecCC
Q psy18018        630 FDVDS  634 (635)
Q Consensus       630 ~~~~~  634 (635)
                      +..+.
T Consensus       357 ~~~~~  361 (425)
T COG0823         357 LASGG  361 (425)
T ss_pred             cCCCC
Confidence            65443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.49  Score=39.49  Aligned_cols=174  Identities=13%  Similarity=0.014  Sum_probs=105.3

Q ss_pred             CcEEEEeCCCCceeeeeccCCccEE--EEEecCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEE
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQSLTS--GMELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFV  512 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  512 (635)
                      ..|++||+.+++.+..-.-....+.  ++.--++ ..+..-.+|.-..+|..+.+.+..+.    ..+.=..++.|++.|
T Consensus        68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~----y~GeGWgLt~d~~~L  143 (262)
T COG3823          68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS----YEGEGWGLTSDDKNL  143 (262)
T ss_pred             ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc----cCCcceeeecCCcce
Confidence            3577777777766544332211111  1111122 33444568888899999888888776    556667888888888


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc
Q psy18018        513 ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD  592 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  592 (635)
                      +.++...+++.-|-++......+.......|+.      .++-+.|- ||.+.|=.-.+..|..-|.++|+.+..+..-.
T Consensus       144 imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~------~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~  216 (262)
T COG3823         144 IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS------KLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSG  216 (262)
T ss_pred             EeeCCceEEEecCHHHhhhcceEEEEECCeecc------cccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence            888777788888877665554443322212211      12223332 77777766666777777888888776653211


Q ss_pred             -------CCCCCceEEEEEeCCCC-eEEEEccCCCe
Q psy18018        593 -------SGGSGGVVWRIRASETK-LVCAVGSRNGT  620 (635)
Q Consensus       593 -------~~~~~~~i~~l~~s~d~-~~l~~~~~dg~  620 (635)
                             ...+.+....+++.|++ +++++|-.=-.
T Consensus       217 L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~  252 (262)
T COG3823         217 LLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPL  252 (262)
T ss_pred             CchhcCccccccccccceeecCcCCeEEEecCcCce
Confidence                   12345567889999988 56666655443

>PHA02790 Kelch-like protein; Provisional

Probab=96.27  E-value=0.56  Score=47.09  Aligned_cols=177  Identities=10%  Similarity=0.057  Sum_probs=92.2

Q ss_pred             cEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC--CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEE
Q psy18018        437 SIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD--STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFV  512 (635)
Q Consensus       437 ~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  512 (635)
                      .+..||..+++...  .+............++.+.+.|+.+  ..+..||..+++-.. +...............+++..
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IY  366 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIY  366 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEE
Confidence            35567766554322  2221122233345677777888764  357888876553222 222111222334455688888


Q ss_pred             EEEeCCC---cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        513 ITSSDDG---TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       513 ~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      +.|+.++   .+..||.++.+........   .+.     .   ...+..-++++.+.|+   .+.+||.++++....- 
T Consensus       367 viGG~~~~~~~ve~ydp~~~~W~~~~~m~---~~r-----~---~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~-  431 (480)
T PHA02790        367 VIGGHSETDTTTEYLLPNHDQWQFGPSTY---YPH-----Y---KSCALVFGRRLFLVGR---NAEFYCESSNTWTLID-  431 (480)
T ss_pred             EecCcCCCCccEEEEeCCCCEEEeCCCCC---Ccc-----c---cceEEEECCEEEEECC---ceEEecCCCCcEeEcC-
Confidence            8888654   4677887766543321110   000     0   0111233677777774   5788999887765322 


Q ss_pred             eccCCCCCceEEEEEeCCCCeEEEEccCCCee-EeEEEEEeeecC
Q psy18018        590 SLDSGGSGGVVWRIRASETKLVCAVGSRNGTE-ETKLLVLDFDVD  633 (635)
Q Consensus       590 ~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~-~~~l~~~d~~~~  633 (635)
                      .... + .... +++ .-+|+..++|+.++.. .-.+..||++.|
T Consensus       432 ~m~~-~-r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        432 DPIY-P-RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCC-C-cccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            1111 1 1112 222 2467888888865321 134778887765

>PHA03098 kelch-like protein; Provisional

Probab=96.05  E-value=1.1  Score=45.96  Aligned_cols=151  Identities=14%  Similarity=0.224  Sum_probs=79.4

Q ss_pred             eeCCcEEEEEeCC-----CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC------CcEEEEECCCCcee
Q psy18018        423 LFDGVHVVSGSLD-----TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD------STVKVWDIVSGQCL  489 (635)
Q Consensus       423 ~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~  489 (635)
                      ..+++.++.|+.+     ..+..||..+++-..  .+............++.+.+.||.+      ..+..||+.+.+-.
T Consensus       340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        340 VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            3455556666654     246677776654322  1111112222344567777777732      45888998765432


Q ss_pred             EEecCCCcccccEEEEEecCCEEEEEeCCC--------cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDG--------TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  561 (635)
                      ..-..+. ......++..++..++.|+.++        .+.+||..+++........   .+    ....   ++ ...+
T Consensus       420 ~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~----r~~~---~~-~~~~  487 (534)
T PHA03098        420 KGSPLPI-SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN---FP----RINA---SL-CIFN  487 (534)
T ss_pred             ecCCCCc-cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC---cc----cccc---eE-EEEC
Confidence            2111111 1122234445777777776432        3888998877644321110   00    0011   11 1227


Q ss_pred             CeEEEEecCC-----CeEEEEeCCCCceE
Q psy18018        562 SRFVITSSDD-----GTVKLWDVKTGEFI  585 (635)
Q Consensus       562 ~~~l~~~~~d-----~~v~iwd~~~~~~~  585 (635)
                      +++++.|+.+     +.+.+||..+.+..
T Consensus       488 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        488 NKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             CEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            8888888764     47899998887653

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.98  Score=40.04  Aligned_cols=112  Identities=11%  Similarity=-0.011  Sum_probs=78.0

Q ss_pred             CcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeecc-ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCC---eEEE
Q psy18018        142 LAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVWSATTG---KCLR  217 (635)
Q Consensus       142 ~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~  217 (635)
                      .+-+..+.+.+++...+..+.-++|.|+.+.+...... .......-...-.+++..++..+.-+.+.|+.+.   ++..
T Consensus        86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lag  165 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAG  165 (370)
T ss_pred             hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence            44566777788999999999999999998765433221 1111222233345778888886767778887653   4445


Q ss_pred             EEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccce
Q psy18018        218 TLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       218 ~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~  253 (635)
                      .+......-+.+..+|++-..+..|+-+.+-|+...
T Consensus       166 rya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp  201 (370)
T COG5276         166 RYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNP  201 (370)
T ss_pred             eeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence            555556666788889999999999999999997653

>KOG2395|consensus

Probab=96.02  E-value=0.15  Score=48.66  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEecCCCcccc-cEEEEEec-------CCEEEEEeCCCcEEEEECCCCce--eeeecc
Q psy18018        468 ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS-AVTCLQFN-------SRFVITSSDDGTVKLWDVKTGEF--STPLMS  537 (635)
Q Consensus       468 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~  537 (635)
                      ++.++.....++-.|+..|+.+.+...   +.. ++..+..+       ...-+.|=.|..|.-||.+-...  +.....
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKF---EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeec---cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            455666667799999999999999886   433 33333332       22234455678899999873322  111111


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                      +.       ..-...-.|.+-. ...++|+|+.+|.|++||- .+..-++..    ++.+.+|..+..+.||+++++.+.
T Consensus       425 kq-------y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAl----PgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  425 KQ-------YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTAL----PGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cc-------cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcc----cccCCceeeEEeeccCcEEEEecc
Confidence            00       0001122333333 3457888999999999996 555444432    578899999999999999887776


Q ss_pred             CC
Q psy18018        618 NG  619 (635)
Q Consensus       618 dg  619 (635)
                      .-
T Consensus       492 ty  493 (644)
T KOG2395|consen  492 TY  493 (644)
T ss_pred             cE
Confidence            54

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.90  E-value=0.024  Score=34.72  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=26.9

Q ss_pred             CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        595 GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       595 ~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      .....|..++|+|...+||.++.+|.  +.++-++
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~--v~v~Rl~   41 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGE--VLVYRLN   41 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCe--EEEEECC
Confidence            44567999999999999999999998  4444443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.90  E-value=1.6  Score=41.29  Aligned_cols=147  Identities=10%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             EEEecCCEEEEEeCCC-----cEEEEECCCCce---eEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECC
Q psy18018        461 GMELRNNILVSGNADS-----TVKVWDIVSGQC---LQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVK  527 (635)
Q Consensus       461 ~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~  527 (635)
                      ++..++.+++.|+.++     .+..+|+.+.+.   ...+...........+...++++.+.|+..     ..+..||..
T Consensus        68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~  147 (323)
T TIGR03548        68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE  147 (323)
T ss_pred             EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC
Confidence            4455677777777643     466777766543   122221111112233344577777777742     357888888


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC----eEEEEeCCCCceEEeeeeccCCCCCc---eE
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG----TVKLWDVKTGEFIRNLVSLDSGGSGG---VV  600 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~---~i  600 (635)
                      +.+........  .        .......+...++++.+.|+.++    .+.+||+++.+....-. ........   ..
T Consensus       148 ~~~W~~~~~~p--~--------~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~  216 (323)
T TIGR03548       148 TQEWFELPDFP--G--------EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD-PTTDSEPISLLGA  216 (323)
T ss_pred             CCCeeECCCCC--C--------CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC-CCCCCCceeccce
Confidence            76543221100  0        00111122234778888888664    35688998876543221 00000111   11


Q ss_pred             EEEEeCCCCeEEEEccCCC
Q psy18018        601 WRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       601 ~~l~~s~d~~~l~~~~~dg  619 (635)
                      .+++ ..++++++.|+.++
T Consensus       217 ~~~~-~~~~~iyv~GG~~~  234 (323)
T TIGR03548       217 ASIK-INESLLLCIGGFNK  234 (323)
T ss_pred             eEEE-ECCCEEEEECCcCH
Confidence            1222 34678888898875

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.86  E-value=1.8  Score=41.67  Aligned_cols=79  Identities=10%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEE----EecC---------------C--EEEEEeC
Q psy18018        416 KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM----ELRN---------------N--ILVSGNA  474 (635)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~----~~~~---------------~--~l~s~~~  474 (635)
                      .......+|++++.++.+.-|.|.++|+.++..++.++|-...-.+.    ....               .  +++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            33344578899988888888999999999998888887754422221    1111               1  3444567


Q ss_pred             CCcEEEEECCCCceeEEecC
Q psy18018        475 DSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~~~~~  494 (635)
                      -|.|.||+++.+..+..+..
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEe
Confidence            88999999999988887764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.84  E-value=2.2  Score=42.23  Aligned_cols=228  Identities=14%  Similarity=0.165  Sum_probs=114.3

Q ss_pred             eEEEEecCcEEEEe-cCC----CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe-CC----------CcEEE
Q psy18018        346 LFGFQFDGVHVVSG-SLD----TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN-AD----------STVKV  407 (635)
Q Consensus       346 ~~~~s~~~~~l~~~-~~d----g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~-~d----------g~i~i  407 (635)
                      ...++|++++++.+ +..    ..++++|+.+++.+...-.. ..-..+.|.  ++.|+-.. .+          ..|..
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            35688999998864 222    45999999999766432111 112237786  34444443 22          23677


Q ss_pred             EEccCCcce-------------eEEEEEeeCCcEEEEEeCC----CcEEEEeCCCC----ceeeeeccC-CccEEEEEec
Q psy18018        408 WDIVSGTKK-------------LMFRICLFDGVHVVSGSLD----TSIRVWEAESG----NLRHTLMGH-QSLTSGMELR  465 (635)
Q Consensus       408 wd~~~~~~~-------------~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~----~~~~~~~~~-~~~v~~~~~~  465 (635)
                      |++.+....             ......+.++++++.....    ..+.+.++..+    .....+... .+....+...
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~  286 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH  286 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence            777655322             2222357788887764432    35778888764    223333333 3333444444


Q ss_pred             CCE-EEEEe---CCCcEEEEECCCCce---eEEecCCCcccccEEEEEecCCEEE-EEeCCC--cEEEEECCCCceeeee
Q psy18018        466 NNI-LVSGN---ADSTVKVWDIVSGQC---LQTLSGRNKHQSAVTCLQFNSRFVI-TSSDDG--TVKLWDVKTGEFSTPL  535 (635)
Q Consensus       466 ~~~-l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~d~--~i~vwd~~~~~~~~~~  535 (635)
                      ++. ++...   ..+.|.-.++.+...   ...+.. ......+..+...+++|+ ..-.++  .|+++++..+......
T Consensus       287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~  365 (414)
T PF02897_consen  287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI  365 (414)
T ss_dssp             TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred             CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence            553 33332   235677777776652   223332 112235666666555554 444444  4788998833322222


Q ss_pred             ccceecCceeEEeccCceecccccCCCeEEE-Ee-cC--CCeEEEEeCCCCceE
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVI-TS-SD--DGTVKLWDVKTGEFI  585 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~-~~--d~~v~iwd~~~~~~~  585 (635)
                      ...          -.+.|..+...++++.+. +. +.  =+++.-||+.+++..
T Consensus       366 ~~p----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  366 PLP----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             ESS----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             cCC----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            211          122233444444444332 22 21  257888888888753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.78  E-value=1.4  Score=41.72  Aligned_cols=69  Identities=7%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             EEecCCEEEEEeC-----CCcEEEEECCCCceeEEecC-CCcccccEEEEEecCCEEEEEeCCCc----EEEEECCCCce
Q psy18018        462 MELRNNILVSGNA-----DSTVKVWDIVSGQCLQTLSG-RNKHQSAVTCLQFNSRFVITSSDDGT----VKLWDVKTGEF  531 (635)
Q Consensus       462 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~~~~~d~~----i~vwd~~~~~~  531 (635)
                      ...++.+.+.|+.     ...+..||+.+.+-.. +.. +........++..++++.+.|+.++.    +.+||.++.+.
T Consensus       120 ~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       120 CYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE-LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             EEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE-CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            3446667677764     2358888887654322 221 11112222334567888888887643    56788887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1897|consensus

Probab=95.76  E-value=3.2  Score=43.62  Aligned_cols=210  Identities=10%  Similarity=0.136  Sum_probs=122.3

Q ss_pred             eEEEEEccCCceEEeeeCCC-c---ceeEEEEe---CCEEEEEeC----------CCcEEEEEccCCcceeEEE------
Q psy18018        364 SIRVWEAESGNLRHTLMGHQ-S---LTSGMELR---NNILVSGNA----------DSTVKVWDIVSGTKKLMFR------  420 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~-~---~v~~l~~~---~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~------  420 (635)
                      .++++|-++.+.+...+... .   .+.+..|.   +.++++|+.          .|.|.++.+..........      
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            46667766555443322111 1   22222343   346666642          4778888877733222211      


Q ss_pred             ----EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc--eeEEe
Q psy18018        421 ----ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQ--CLQTL  492 (635)
Q Consensus       421 ----~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~--~~~~~  492 (635)
                          ..-.+|+++|.  -+..+++|++.+.+.++.-..+..++.++..  .++.+++|.--+.+.+...+..+  .....
T Consensus       831 av~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  831 AVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             ceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence                13346666554  4678999999988777777778777777766  68999999988888776554333  33332


Q ss_pred             cCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCcee----eee--ccceecC-ceeEEeccCceec--ccccCCC
Q psy18018        493 SGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFS----TPL--MSSFILN-PFYFLIYSQPLLC--PHLQFNS  562 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~----~~~--~~~~~~~-~~~~~~~~~~v~~--~~~s~~~  562 (635)
                      +.  -+...++++.+ ++..++.+..+|.+.+-...+....    ..+  ...++.. .+....|..-|++  -..+|-+
T Consensus       909 rD--~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~  986 (1096)
T KOG1897|consen  909 RD--YNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLE  986 (1096)
T ss_pred             hh--hCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCC
Confidence            22  25667777877 7888888888898888765532111    000  1111111 1222334444444  2334555


Q ss_pred             eEEEEecCCCeEEEE
Q psy18018        563 RFVITSSDDGTVKLW  577 (635)
Q Consensus       563 ~~l~~~~~d~~v~iw  577 (635)
                      ..+..|..+|.|-+-
T Consensus       987 ~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  987 PKVLFGTVNGSIGII 1001 (1096)
T ss_pred             CcEEEEEccceEEEE
Confidence            667788889988755

>PHA02790 Kelch-like protein; Provisional

Probab=95.70  E-value=1.1  Score=45.05  Aligned_cols=147  Identities=14%  Similarity=0.138  Sum_probs=78.8

Q ss_pred             eeCCcEEEEEeCC--CcEEEEeCCCCcee--eeeccCCccEEEEEecCCEEEEEeCCC---cEEEEECCCCceeEEecCC
Q psy18018        423 LFDGVHVVSGSLD--TSIRVWEAESGNLR--HTLMGHQSLTSGMELRNNILVSGNADS---TVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       423 ~~~~~~l~~~~~d--~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~  495 (635)
                      ..++...+.|+.+  ..+..||..+++-.  ..+............++.+.+.||.++   .+..||..+.+-...-...
T Consensus       316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            4466666666643  35677776654332  222212223334556788888888654   4778888765432211111


Q ss_pred             CcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC----
Q psy18018        496 NKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----  571 (635)
Q Consensus       496 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  571 (635)
                      . ..........+++..+.|+   .+.+||.++++........  . +      .... ++ ..-++++.++||.+    
T Consensus       396 ~-~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~--~-~------r~~~-~~-~v~~~~IYviGG~~~~~~  460 (480)
T PHA02790        396 Y-PHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPI--Y-P------RDNP-EL-IIVDNKLLLIGGFYRGSY  460 (480)
T ss_pred             C-ccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCC--C-C------cccc-EE-EEECCEEEEECCcCCCcc
Confidence            1 1222334456777777774   5778998877644321110  0 0      0001 11 12378888888864    


Q ss_pred             -CeEEEEeCCCCce
Q psy18018        572 -GTVKLWDVKTGEF  584 (635)
Q Consensus       572 -~~v~iwd~~~~~~  584 (635)
                       ..+..||..+++.
T Consensus       461 ~~~ve~Yd~~~~~W  474 (480)
T PHA02790        461 IDTIEVYNNRTYSW  474 (480)
T ss_pred             cceEEEEECCCCeE
Confidence             3577888777664

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=2.4  Score=41.18  Aligned_cols=174  Identities=16%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             EEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEecCCEEEEEeC---CCcEEEEECCCCceeEEecCCCcccccEEEE
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNA---DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCL  505 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  505 (635)
                      +....++.+.+.|..+.+......- ....-..+.++++.+..+..   ++++.+.|..+.+.......   ...+ ..+
T Consensus        90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v---G~~P-~~~  165 (381)
T COG3391          90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV---GNTP-TGV  165 (381)
T ss_pred             EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec---CCCc-ceE
Confidence            3333457788888776666555432 22233345556655554444   78899999998888887554   2223 455


Q ss_pred             Ee--cCCEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC---CeEEEEeC
Q psy18018        506 QF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD---GTVKLWDV  579 (635)
Q Consensus       506 ~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~v~iwd~  579 (635)
                      ++  +++.++.. ..++.|.+.|........ -....      ...-...-..+.++|+|.++.+....   +.+...|.
T Consensus       166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~  238 (381)
T COG3391         166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT  238 (381)
T ss_pred             EECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence            55  67755444 478999999977665442 11000      00012233557889999966665444   58999999


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                      .++.....-..   .+.. ....+.++|+|..+.+....
T Consensus       239 ~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         239 ATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             CCceEEEeccc---cccC-CCCceeECCCCCEEEEEecC
Confidence            99887766322   1222 45678899999988888555

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.3  Score=40.63  Aligned_cols=136  Identities=13%  Similarity=0.054  Sum_probs=83.0

Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCC--CcccccEEEEEe-c
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGR--NKHQSAVTCLQF-N  508 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~-~  508 (635)
                      .-.+|.-..+|..+.+.+.++. -++.-.++..++..|+.++...+++.-|.++......+...  ...-..+..+.| +
T Consensus       107 Tw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd  185 (262)
T COG3823         107 TWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD  185 (262)
T ss_pred             EeccceeEEEChHHhhhhcccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence            3457777788888777666554 33445677777777777777777888787765444333220  011223445555 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeccceecCcee-EEeccCceecccccCCC-eEEEEe
Q psy18018        509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY-FLIYSQPLLCPHLQFNS-RFVITS  568 (635)
Q Consensus       509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~~~  568 (635)
                      |...|-.=.+..|...+..+|+....+.......... ...+..-.+.+++.|++ ++++||
T Consensus       186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            7777766666677777888888777665432222111 11234467788999887 666665

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.45  E-value=1.7  Score=44.63  Aligned_cols=202  Identities=14%  Similarity=0.084  Sum_probs=110.5

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCC
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDD  100 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d  100 (635)
                      |....+ +..++|    |||+.+|......-.--.....+.+++. .+.....+.+..  . +.-.|+  |+.|++..+.
T Consensus       347 g~~~~v-sspaiS----pdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~--~-t~PsWspDG~~lw~v~dg  417 (591)
T PRK13616        347 GQMGNI-TSAALS----RSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHS--L-TRPSWSLDADAVWVVVDG  417 (591)
T ss_pred             ccccCc-ccceEC----CCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCC--C-CCceECCCCCceEEEecC
Confidence            444455 899999    9999998765211000001223334453 223323334432  3 678888  6888887653


Q ss_pred             CcE-EEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEE---EeCCCccc
Q psy18018        101 NTL-KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKI---WNPDTEEC  174 (635)
Q Consensus       101 ~~v-~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~i---wd~~~~~~  174 (635)
                      ..+ ++.+          ....+.+.+.+++.++...   ...+.|..+.|  ||.++|... +|.|.+   -....|+.
T Consensus       418 ~~~~~v~~----------~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~  483 (591)
T PRK13616        418 NTVVRVIR----------DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY  483 (591)
T ss_pred             cceEEEec----------cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce
Confidence            222 2222          1234566666777665544   33567999999  999888876 477776   44444541


Q ss_pred             ee----ecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeEEEEEeC--CCCCeEEEEeeCCEEEEeeCceeEE
Q psy18018        175 LH----AELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATT-GKCLRTLIG--HTGGVWSSQMAGNIIISGSTDRTLK  246 (635)
Q Consensus       175 ~~----~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~--h~~~v~~~~~~~~~l~s~~~dg~i~  246 (635)
                      ..    .+... ........|..+..|+++..++.-.+|.+.- |.....+.+  ...++.+++-....++....+|.+.
T Consensus       484 ~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~  563 (591)
T PRK13616        484 ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQ  563 (591)
T ss_pred             eecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEE
Confidence            11    11111 1112345566666677777666555665432 222222222  3566777776656677667777554


Q ss_pred             E
Q psy18018        247 G  247 (635)
Q Consensus       247 ~  247 (635)
                      +
T Consensus       564 l  564 (591)
T PRK13616        564 L  564 (591)
T ss_pred             e
Confidence            4

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.35  E-value=1.1  Score=45.99  Aligned_cols=78  Identities=15%  Similarity=0.176  Sum_probs=49.2

Q ss_pred             ccCceecccccCCCeEEEEecCCCeEEE---EeCCCCc-eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeE
Q psy18018        549 YSQPLLCPHLQFNSRFVITSSDDGTVKL---WDVKTGE-FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETK  624 (635)
Q Consensus       549 ~~~~v~~~~~s~~~~~l~~~~~d~~v~i---wd~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~  624 (635)
                      ....|..+.|||||..+|... ++.|.+   -....|+ .+.....+. ......+.++.|.+++.++ ++..++.  ..
T Consensus       446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~--~~  520 (591)
T PRK13616        446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPE--HP  520 (591)
T ss_pred             cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee-cccCCccccceEecCCEEE-EEecCCC--Cc
Confidence            356799999999999888765 577877   5555665 121111111 1334456889999999965 5555554  33


Q ss_pred             EEEEeee
Q psy18018        625 LLVLDFD  631 (635)
Q Consensus       625 l~~~d~~  631 (635)
                      +|.++++
T Consensus       521 v~~v~vD  527 (591)
T PRK13616        521 VWYVNLD  527 (591)
T ss_pred             eEEEecC
Confidence            5555554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.30  E-value=1.2  Score=45.60  Aligned_cols=117  Identities=15%  Similarity=0.192  Sum_probs=76.4

Q ss_pred             cCCEEEEEeCCCcEEEEECCCCc-----e---eeeeccceecCceeEEeccCceeccccc--CCCeEEEEecCCCeEEEE
Q psy18018        508 NSRFVITSSDDGTVKLWDVKTGE-----F---STPLMSSFILNPFYFLIYSQPLLCPHLQ--FNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       508 ~~~~l~~~~~d~~i~vwd~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~v~iw  577 (635)
                      +...|+.+.+||.|.+|.+++-.     .   ...........|...........+++++  ...++||+++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            46789999999999999875311     0   0000011223445555566788999998  889999999999999988


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEEeCCCC------eEEEEccCCCeeEeEEEEEee
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETK------LVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~------~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      -....+......  ....+...|.++.|-++.      .+|++++-.|.    +|.+++
T Consensus       193 af~l~~~r~~~~--~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~----v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHV--PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE----VWTFKI  245 (717)
T ss_pred             EEeccccccccc--cccccccCCCeeEeecCCCCCccceEEEEEeccCc----EEEEEE
Confidence            665432111110  012355678899997654      38888999998    666655

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.23  E-value=2.8  Score=39.65  Aligned_cols=76  Identities=9%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             eeEEeccCceeccccc-------CCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        544 FYFLIYSQPLLCPHLQ-------FNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       544 ~~~~~~~~~v~~~~~s-------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      .....+...++.+.|-       ..+.++++.-..+.|...++.++..+.....+. .....++..+++.|||.++++-+
T Consensus       246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~pDG~Lyv~~d  324 (331)
T PF07995_consen  246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQGPDGALYVSDD  324 (331)
T ss_dssp             SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEETTSEEEEEE-
T ss_pred             ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEcCCCeEEEEEC
Confidence            3333344455555544       266788877777888888887554443332222 34556899999999999999988


Q ss_pred             CCCe
Q psy18018        617 RNGT  620 (635)
Q Consensus       617 ~dg~  620 (635)
                      .+|.
T Consensus       325 ~~G~  328 (331)
T PF07995_consen  325 SDGK  328 (331)
T ss_dssp             TTTT
T ss_pred             CCCe
Confidence            8887

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.17  E-value=3.2  Score=39.82  Aligned_cols=137  Identities=10%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC------cEEEEECCCCceeeeeccceecCceeEEec
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG------TVKLWDVKTGEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  549 (635)
                      ..+..||..+.+-...-..+.........+..++++++.|+.+.      .+.++++......-..........  ...+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r--~~~~  245 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK--SSSQ  245 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC--CCcc
Confidence            46889998765432211111111122333445788888887532      244555532211111111100000  0000


Q ss_pred             cCceecccccCCCeEEEEecCC----------------------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDD----------------------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      .....+.+...++++.+.|+.+                      ..+.+||.++.+....- .++   . ..-...+..-
T Consensus       246 ~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~-~lp---~-~~~~~~~~~~  320 (346)
T TIGR03547       246 EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG-KLP---Q-GLAYGVSVSW  320 (346)
T ss_pred             ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC-CCC---C-CceeeEEEEc
Confidence            0000111223478888888754                      15779998876543222 111   1 1122334456


Q ss_pred             CCeEEEEccCCC
Q psy18018        608 TKLVCAVGSRNG  619 (635)
Q Consensus       608 d~~~l~~~~~dg  619 (635)
                      +++++++|+.+.
T Consensus       321 ~~~iyv~GG~~~  332 (346)
T TIGR03547       321 NNGVLLIGGENS  332 (346)
T ss_pred             CCEEEEEeccCC
Confidence            788888888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=94.74  E-value=4.1  Score=38.95  Aligned_cols=162  Identities=11%  Similarity=0.106  Sum_probs=79.5

Q ss_pred             EEEecCCEEEEEeCC-----CcEEEEECCCCceeEEecCC-----CcccccEEEEEecCCEEEEEeCC-----------C
Q psy18018        461 GMELRNNILVSGNAD-----STVKVWDIVSGQCLQTLSGR-----NKHQSAVTCLQFNSRFVITSSDD-----------G  519 (635)
Q Consensus       461 ~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d-----------~  519 (635)
                      .+...+.+++.|+.+     ..+.+||+.+.+-.. +...     ......-.....++++++.|+.+           .
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  159 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR  159 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEE-eccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence            445567777777753     357888987654322 2110     00111122233467777777754           2


Q ss_pred             cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-------------CeEEEEeCCCCceEE
Q psy18018        520 TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-------------GTVKLWDVKTGEFIR  586 (635)
Q Consensus       520 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------~~v~iwd~~~~~~~~  586 (635)
                      .+.+||.++.+............+      .... ++ ...++++.+.++.+             ..+.+||+.+.+...
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~------r~~~-~~-~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~  231 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEK------RGGA-GF-AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE  231 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCC------CCcc-eE-EEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence            477888887654321111000000      0000 11 12366766665532             468899998877653


Q ss_pred             eeeeccCCCCCceEEEEEeCCCCeEEEEccCC----------CeeEeEEEEEeeecC
Q psy18018        587 NLVSLDSGGSGGVVWRIRASETKLVCAVGSRN----------GTEETKLLVLDFDVD  633 (635)
Q Consensus       587 ~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d----------g~~~~~l~~~d~~~~  633 (635)
                      .-..-..+........+  .-++++++.|+..          +...-.+|.||++.+
T Consensus       232 ~~~~g~~P~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        232 VETTGAKPSARSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             ccccCCCCCCcceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            22100000111112222  2357888888862          222236899998765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=4.4  Score=39.32  Aligned_cols=250  Identities=17%  Similarity=0.150  Sum_probs=144.2

Q ss_pred             CceEEEEecCcEEEEecC-CCeEEEEEccCCceEEee-eCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcceeE
Q psy18018        344 PDLFGFQFDGVHVVSGSL-DTSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~-~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ...+.+.+++..+..... ...+...+.. ....... ......-..++.+  +. ..+....+..+.+.|..+.+....
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            344557777755444432 2245554444 2222211 1111222344443  34 555555668899999766655444


Q ss_pred             EE--------EEeeCCcEEEEEeC---CCcEEEEeCCCCceeeeeccCCccEEEEE--ecCCEEE-EEeCCCcEEEEECC
Q psy18018        419 FR--------ICLFDGVHVVSGSL---DTSIRVWEAESGNLRHTLMGHQSLTSGME--LRNNILV-SGNADSTVKVWDIV  484 (635)
Q Consensus       419 ~~--------~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~-s~~~dg~i~iwd~~  484 (635)
                      ..        .++++++.+.++..   ++++.+.|..+++.......-..+ ..+.  ++++.+. +-..++.+.+.|..
T Consensus       112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            43        36778888777766   689999999998888775543333 4444  4566444 44578999999977


Q ss_pred             CCceeE-E----ecCCCcccccEEEEEecCCEEEEEeCC---CcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        485 SGQCLQ-T----LSGRNKHQSAVTCLQFNSRFVITSSDD---GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       485 ~~~~~~-~----~~~~~~~~~~v~~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      .....+ .    ...  ........+..++.++......   +.+...|..++..........         -. ....+
T Consensus       191 ~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~---------~~-~~~~v  258 (381)
T COG3391         191 GNSVVRGSVGSLVGV--GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG---------SG-APRGV  258 (381)
T ss_pred             Ccceecccccccccc--CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc---------cC-CCCce
Confidence            665553 1    111  0111223344477765555443   588888888877655421110         01 34457


Q ss_pred             cccCCCeEEEEecC-CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCC
Q psy18018        557 HLQFNSRFVITSSD-DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETK  609 (635)
Q Consensus       557 ~~s~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  609 (635)
                      .++|+|+.+.+... .+.+.+-|..+......+...  ......+..+++.+..
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~  310 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG--NEALGEPVSIAISPLY  310 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc--ccccccceeccceeec
Confidence            88999998888744 488999999988877665321  1112235555555433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.68  E-value=3.1  Score=37.23  Aligned_cols=172  Identities=13%  Similarity=0.128  Sum_probs=104.1

Q ss_pred             eccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018        452 LMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       452 ~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~  527 (635)
                      +.+-...+.++.+++  +.|++......-.++=-.+|+.++.+....  -...-.+.+  ++++.++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--FSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc--cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            345555688999864  466666666666666666789888877532  222334666  56667777778899999888


Q ss_pred             CCceeeeeccc-eecCceeEEec-cCceecccccCCCeEEEEecCCCeEEEEeCCCCc-eEEeeeeccCCC----CCceE
Q psy18018        528 TGEFSTPLMSS-FILNPFYFLIY-SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE-FIRNLVSLDSGG----SGGVV  600 (635)
Q Consensus       528 ~~~~~~~~~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~----~~~~i  600 (635)
                      ........... ....   ...+ +...-.++|+|..+.|..+-+-.-++||.+..+. .+..-....+..    .-.-|
T Consensus       159 ~~t~~~~~~~~~i~L~---~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         159 ADTTVISAKVQKIPLG---TTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             CCccEEeccceEEecc---ccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            76544333221 1111   1112 4456789999999999989888888888776433 111110101111    12347


Q ss_pred             EEEEeCCC-CeEEEEccCCCeeEeEEEEEeeec
Q psy18018        601 WRIRASET-KLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       601 ~~l~~s~d-~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      .++.|.+. +.+|+.+.+++.    |..+|.+.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~----l~Evd~~G  264 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRR----LLEVDLSG  264 (316)
T ss_pred             ccceecCCCCcEEEEecCCce----EEEEecCC
Confidence            78888764 556666666665    66666544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.16  E-value=5.3  Score=37.83  Aligned_cols=224  Identities=13%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe----CCEEEEEe----------------------CC
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----NNILVSGN----------------------AD  402 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~s~~----------------------~d  402 (635)
                      ++++.+.++-...+..++-.|+.+.+....+......+....+.    ...++-.-                      ..
T Consensus        88 ~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~  167 (386)
T PF14583_consen   88 LSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPH  167 (386)
T ss_dssp             E-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---
T ss_pred             EecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCC
Confidence            56666665544444577778888776655554444433323331    22222111                      11


Q ss_pred             CcEEEEEccCCcceeEEE--------EEeeCCcEEEEEeCCC-----cEEEEeCCC-CceeeeeccCCc-cEEEEE---e
Q psy18018        403 STVKVWDIVSGTKKLMFR--------ICLFDGVHVVSGSLDT-----SIRVWEAES-GNLRHTLMGHQS-LTSGME---L  464 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~--------~~~~~~~~l~~~~~d~-----~i~~~d~~~-~~~~~~~~~~~~-~v~~~~---~  464 (635)
                      ..|.-.|+.+++....+.        .++|....++.-+.+|     .-++|-+.+ +.....+..+.. .+..=.   +
T Consensus       168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred             ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence            234445666665544443        3666555555543332     124444332 333333333322 222222   2


Q ss_pred             cCCEEEE-----EeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC----------------cEEE
Q psy18018        465 RNNILVS-----GNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG----------------TVKL  523 (635)
Q Consensus       465 ~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~----------------~i~v  523 (635)
                      +|..+.-     ++.+..|.-+|+.+++.......   ....-.-.+.|+++++-=+.|.                -|++
T Consensus       248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~  324 (386)
T PF14583_consen  248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL  324 (386)
T ss_dssp             TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred             CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence            5553322     22344577778887765432221   0111111222567665444332                4667


Q ss_pred             EECCCCceeeeeccceecCceeEEeccCc--eecccccCCCeEEEE-ecCCCeEEEEe
Q psy18018        524 WDVKTGEFSTPLMSSFILNPFYFLIYSQP--LLCPHLQFNSRFVIT-SSDDGTVKLWD  578 (635)
Q Consensus       524 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~-~~~d~~v~iwd  578 (635)
                      ++++.+.........   .......+...  =-...||||+++++- +...|...||=
T Consensus       325 ~~~~~~~~~~l~~h~---~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  325 FDVEAGRFRKLARHD---TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             EETTTTEEEEEEE----------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             eccccCceeeeeecc---CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            777766543222110   00000000000  124679999997665 44566655553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.16  E-value=0.13  Score=49.26  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=57.2

Q ss_pred             CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCC--
Q psy18018        518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGG--  595 (635)
Q Consensus       518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~--  595 (635)
                      .+.+.++|+++++.......            ...+....|||||+.+|-.. ++.|.++++.+++.. ++..-....  
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~------------~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~   87 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP------------PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIY   87 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E------------ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEE
T ss_pred             ceeEEEEecCCCceEECcCC------------ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEE
Confidence            35689999999764433321            35677789999999999886 678999999888543 332211000  


Q ss_pred             --C---------CceEEEEEeCCCCeEEEEccCCCe
Q psy18018        596 --S---------GGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       596 --~---------~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                        .         -+.-.++.|||||++||....|.+
T Consensus        88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~  123 (353)
T PF00930_consen   88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER  123 (353)
T ss_dssp             ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred             cCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence              0         112357889999999998765554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PLN02193 nitrile-specifier protein

Probab=94.09  E-value=7.2  Score=39.18  Aligned_cols=161  Identities=9%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             EEecCCEEEEEeCC-----CcEEEEECCCCceeEEecCC---CcccccEEEEEecCCEEEEEeCCC-----cEEEEECCC
Q psy18018        462 MELRNNILVSGNAD-----STVKVWDIVSGQCLQTLSGR---NKHQSAVTCLQFNSRFVITSSDDG-----TVKLWDVKT  528 (635)
Q Consensus       462 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~d~-----~i~vwd~~~  528 (635)
                      +...+.+.+.|+.+     ..+..||+.+.+-.. +...   ........+...++++++.|+.++     .+..||+.+
T Consensus       225 v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t  303 (470)
T PLN02193        225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD  303 (470)
T ss_pred             EEECCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC
Confidence            34466677777654     358888988754322 2111   001122233445777777777543     467788877


Q ss_pred             CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC----CeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018        529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                      .+.........  .+      ...-...+..-++++++.++.+    ..+.+||+.+.+....-..-..+.......++ 
T Consensus       304 ~~W~~~~~~~~--~~------~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-  374 (470)
T PLN02193        304 KKWFHCSTPGD--SF------SIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-  374 (470)
T ss_pred             CEEEeCCCCCC--CC------CCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-
Confidence            65432211000  00      0000011112267777777755    46899999988764322100000111112222 


Q ss_pred             eCCCCeEEEEccCCC----------eeEeEEEEEeeecC
Q psy18018        605 ASETKLVCAVGSRNG----------TEETKLLVLDFDVD  633 (635)
Q Consensus       605 ~s~d~~~l~~~~~dg----------~~~~~l~~~d~~~~  633 (635)
                       .-++++++.|+.+.          ...-.+|.||++.+
T Consensus       375 -~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        375 -AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             -EECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence             33678888888642          22224889988754

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.81  E-value=4.4  Score=38.44  Aligned_cols=150  Identities=15%  Similarity=0.261  Sum_probs=84.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEecCCCccccc---EEEEEecCCE--EEEEe-CC---CcEEEEECCC--Cceeeee
Q psy18018        467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA---VTCLQFNSRF--VITSS-DD---GTVKLWDVKT--GEFSTPL  535 (635)
Q Consensus       467 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~--l~~~~-~d---~~i~vwd~~~--~~~~~~~  535 (635)
                      .+++....++-+.+||+. |+.++.+...  ....   ...+..+++.  |+.++ .+   ..|++|.+..  +. +..+
T Consensus        69 SlIigTdK~~GL~VYdL~-Gk~lq~~~~G--r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v  144 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLD-GKELQSLPVG--RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV  144 (381)
T ss_dssp             -EEEEEETTTEEEEEETT-S-EEEEE-SS---EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred             ceEEEEeCCCCEEEEcCC-CcEEEeecCC--CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence            477777788889999986 5566666431  1111   1223334443  44444 32   4699998763  32 2222


Q ss_pred             ccceecCceeEEeccCceecccc--cC-CCe-EEEEecCCCeEEEEeCC---CC----ceEEeeeeccCCCCCceEEEEE
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHL--QF-NSR-FVITSSDDGTVKLWDVK---TG----EFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~--s~-~~~-~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                      ...  ..++  ......+..+|+  +| +|. +.+....+|.+..|.+.   .+    +.+++|.      ..+.+..++
T Consensus       145 ~~~--~~p~--~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~------~~sQ~EGCV  214 (381)
T PF02333_consen  145 TDP--AAPI--ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK------VGSQPEGCV  214 (381)
T ss_dssp             CBT--TC-E--E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-------SS-EEEEE
T ss_pred             CCC--Cccc--ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec------CCCcceEEE
Confidence            110  0011  011223455555  33 454 66667889999888775   23    3466663      344788999


Q ss_pred             eCCCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018        605 ASETKLVCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       605 ~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                      ......+|..+-++--    ||.|+.+++.
T Consensus       215 VDDe~g~LYvgEE~~G----IW~y~Aep~~  240 (381)
T PF02333_consen  215 VDDETGRLYVGEEDVG----IWRYDAEPEG  240 (381)
T ss_dssp             EETTTTEEEEEETTTE----EEEEESSCCC
T ss_pred             EecccCCEEEecCccE----EEEEecCCCC
Confidence            9999999999999976    9999988764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.71  E-value=4.2  Score=36.71  Aligned_cols=64  Identities=19%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             CceecccccCCCeEEEEecCCCeEEEEe-CCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        551 QPLLCPHLQFNSRFVITSSDDGTVKLWD-VKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd-~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      ..++...|++++...+....+...+++. ..+++........  ....+.|.++++||||..+|...
T Consensus        66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~--~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW--PGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc--cccCCceEEEEECCCCcEEEEEE
Confidence            4677788999988888777777777774 3444332221111  12222899999999999888776

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.68  E-value=0.42  Score=41.76  Aligned_cols=84  Identities=24%  Similarity=0.392  Sum_probs=59.9

Q ss_pred             cccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEE------eccCceecccccCCCeEEEEecCCC
Q psy18018        499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFL------IYSQPLLCPHLQFNSRFVITSSDDG  572 (635)
Q Consensus       499 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~  572 (635)
                      ..++..+..++.+|++.+.+|.+++||+.+++...+...   ..|+...      .....|..+.++.+|.-+++-+ +|
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S---i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng   87 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS---IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG   87 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc---HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence            345666788999999999999999999999876543311   1111110      3456788999998888777655 57


Q ss_pred             eEEEEeCCCCceEE
Q psy18018        573 TVKLWDVKTGEFIR  586 (635)
Q Consensus       573 ~v~iwd~~~~~~~~  586 (635)
                      ..+.|+..-+..+.
T Consensus        88 ~~y~y~~~L~~W~~  101 (219)
T PF07569_consen   88 DSYSYSPDLGCWIR  101 (219)
T ss_pred             CEEEeccccceeEE
Confidence            89999977665554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.68  E-value=0.22  Score=29.50  Aligned_cols=30  Identities=13%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             ceecccccCCC---eEEEEecCCCeEEEEeCCC
Q psy18018        552 PLLCPHLQFNS---RFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       552 ~v~~~~~s~~~---~~l~~~~~d~~v~iwd~~~  581 (635)
                      .+.++.|||+.   .+|+.+-..|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57889999855   4999888899999999985

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.51  E-value=6.1  Score=36.43  Aligned_cols=143  Identities=13%  Similarity=0.079  Sum_probs=66.0

Q ss_pred             EEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE-EEecCCEEEEEeCCCcEEEEECCCC-ceeeeec
Q psy18018        459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC-LQFNSRFVITSSDDGTVKLWDVKTG-EFSTPLM  536 (635)
Q Consensus       459 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~  536 (635)
                      ..++.+.++....++..+ +.+.....++.-..+............ .+.+......++..|.|+.  ..++ +.=..+.
T Consensus        64 l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~--T~DgG~tW~~~~  140 (302)
T PF14870_consen   64 LNSISFDGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR--TTDGGKTWQAVV  140 (302)
T ss_dssp             EEEEEEETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE--ESSTTSSEEEEE
T ss_pred             EEEEEecCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE--eCCCCCCeeEcc
Confidence            456667655444455555 334444445544443321112222222 2334444444455554433  3322 2111111


Q ss_pred             cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      .          .-...+..+..++||++++++.......-||.-.......-     .....+|.+|.|+||+.+.+++ 
T Consensus       141 ~----------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-----r~~~~riq~~gf~~~~~lw~~~-  204 (302)
T PF14870_consen  141 S----------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-----RNSSRRIQSMGFSPDGNLWMLA-  204 (302)
T ss_dssp             -----------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-
T ss_pred             c----------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-----cCccceehhceecCCCCEEEEe-
Confidence            1          12356777888999999999887777778885433332222     2456789999999999876655 


Q ss_pred             CCCe
Q psy18018        617 RNGT  620 (635)
Q Consensus       617 ~dg~  620 (635)
                      ..|.
T Consensus       205 ~Gg~  208 (302)
T PF14870_consen  205 RGGQ  208 (302)
T ss_dssp             TTTE
T ss_pred             CCcE
Confidence            6665

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.49  E-value=6  Score=36.45  Aligned_cols=176  Identities=11%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             cEEEEeCCCCceeeeecc------CCccEEEEEecC-------CEE-EEEeCCCcEEEEECCCCceeEEecCCCccccc-
Q psy18018        437 SIRVWEAESGNLRHTLMG------HQSLTSGMELRN-------NIL-VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA-  501 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~------~~~~v~~~~~~~-------~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-  501 (635)
                      +|.+||+.++++++++.-      ..+....+.++.       .++ ++=...+.|.++|+.+++..+.+......... 
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            567778887777666542      234566666643       233 33334467999999998877666542111110 


Q ss_pred             EE------EEEe-cCCEEEEE---eCCCcEEEEECCCCceeeeecc---------ce--ecCceeEEec-cCceeccccc
Q psy18018        502 VT------CLQF-NSRFVITS---SDDGTVKLWDVKTGEFSTPLMS---------SF--ILNPFYFLIY-SQPLLCPHLQ  559 (635)
Q Consensus       502 v~------~~~~-~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~---------~~--~~~~~~~~~~-~~~v~~~~~s  559 (635)
                      ..      .+.+ +|..=++.   +.|+..--|..-++..+..+..         ..  ....+..... ......++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence            10      1112 12110111   1133222233222221111110         00  0112222222 2356678899


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCC---ceEEeeeeccCCCC-CceEEEEEeCC--CCeEEEEc
Q psy18018        560 FNSRFVITSSDDGTVKLWDVKTG---EFIRNLVSLDSGGS-GGVVWRIRASE--TKLVCAVG  615 (635)
Q Consensus       560 ~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~-~~~i~~l~~s~--d~~~l~~~  615 (635)
                      ++|.+.++--..+.|..|+..+.   +.+..+..   ... -..+.++.+.+  +|.+-+..
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~---d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ---DPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE----CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEE---cCceeeccceeeeccccCceEEEEE
Confidence            99999999999999999998761   12222221   122 34678899998  77755544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=93.36  E-value=10  Score=38.43  Aligned_cols=56  Identities=13%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecCCC
Q psy18018        572 GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK  635 (635)
Q Consensus       572 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~~  635 (635)
                      +.|.|.| ++.+.+..+..   -+.+..|.++.|-.|.-+++|--.=.-    ||++|+..+.+
T Consensus       304 N~lyVLD-~~L~~vG~l~~---la~gE~IysvRF~Gd~~Y~VTFrqvDP----LfviDLsdP~~  359 (521)
T PF09826_consen  304 NNLYVLD-EDLKIVGSLEG---LAPGERIYSVRFMGDRAYLVTFRQVDP----LFVIDLSDPAN  359 (521)
T ss_pred             EEEEEEC-CCCcEeEEccc---cCCCceEEEEEEeCCeEEEEEEeecCc----eEEEECCCCCC
Confidence            5688888 77777777765   356789999999999999998887554    99999987653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.19  E-value=8.8  Score=37.27  Aligned_cols=68  Identities=13%  Similarity=0.254  Sum_probs=38.6

Q ss_pred             CCCeEEEEecCCC----------------------eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        560 FNSRFVITSSDDG----------------------TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       560 ~~~~~l~~~~~d~----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                      .++++++.|+.+.                      .+.+||+.+++.... ...+. ..   -...+..-+++++++|+.
T Consensus       278 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~-~~lp~-~r---~~~~av~~~~~iyv~GG~  352 (376)
T PRK14131        278 SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV-GELPQ-GL---AYGVSVSWNNGVLLIGGE  352 (376)
T ss_pred             ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc-CcCCC-Cc---cceEEEEeCCEEEEEcCC
Confidence            4788888887541                      356899988765322 11111 11   112234456778888876


Q ss_pred             CC--eeEeEEEEEeeec
Q psy18018        618 NG--TEETKLLVLDFDV  632 (635)
Q Consensus       618 dg--~~~~~l~~~d~~~  632 (635)
                      ..  ...-.++.++++.
T Consensus       353 ~~~~~~~~~v~~~~~~~  369 (376)
T PRK14131        353 TAGGKAVSDVTLLSWDG  369 (376)
T ss_pred             CCCCcEeeeEEEEEEcC
Confidence            42  2345677777664

>KOG1916|consensus

Probab=93.14  E-value=0.04  Score=55.94  Aligned_cols=92  Identities=11%  Similarity=0.005  Sum_probs=47.5

Q ss_pred             EeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCC--ccceeecccc---------ceeEEeeeccCCCEEEEEeCC
Q psy18018        137 VLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT--EECLHAELQE---------TEVELSHGYALRSRIVSGSDD  202 (635)
Q Consensus       137 ~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d  202 (635)
                      .+++..+.|-.+.|   +...++  -.-|...+|+++-  |+....+..+         ..+..+.......++..+..+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            34577888888888   333333  4457788998763  3322221110         112222222333455556666


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCeEEEEe
Q psy18018        203 NTLKVWSATTGKCLRTLIGHTGGVWSSQM  231 (635)
Q Consensus       203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~  231 (635)
                      +.+++.+.+.... ..+.+|...+..+++
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~  232 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAF  232 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHH
Confidence            7777666543222 334456666555543

>KOG2280|consensus

Probab=92.99  E-value=4.5  Score=41.22  Aligned_cols=39  Identities=10%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ..+..+..||+.++|+-=...|.+.+-+....+.+..+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            467788999999999999999999999888777766664

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.96  E-value=9.4  Score=36.99  Aligned_cols=70  Identities=17%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeeccccc-eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQET-EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG  221 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  221 (635)
                      ...+..++.+|.+...|..+|+.+....... ..........+..++..+.++.+...|..+|+.......
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence            3448888888989999998898887766665 222233333456666666889999999998988776543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.63  E-value=7.6  Score=35.07  Aligned_cols=151  Identities=10%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             EEEecCCEEEEEe-CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE-CCCCceeeeec
Q psy18018        461 GMELRNNILVSGN-ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD-VKTGEFSTPLM  536 (635)
Q Consensus       461 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd-~~~~~~~~~~~  536 (635)
                      +++.+++.++... .++.-.+|-...+.....+.    ....++.-+|  ++...+....+...+++. ..+++......
T Consensus        30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v  105 (253)
T PF10647_consen   30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV  105 (253)
T ss_pred             EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence            4555677665554 23333333333333333332    1124555566  456666656566666664 33333211110


Q ss_pred             cceecCceeEEeccCceecccccCCCeEEEEec---CCCeEEEEeCC---CC--ceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS---DDGTVKLWDVK---TG--EFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~v~iwd~~---~~--~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      .        .......|+.+.+||||..+|...   .++.|.|=-+.   .+  ..+.....+. ......+..++|.++
T Consensus       106 ~--------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~-~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  106 D--------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA-PPLLSDVTDVAWSDD  176 (253)
T ss_pred             c--------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec-ccccCcceeeeecCC
Confidence            0        000112899999999999877655   35677776543   23  1111111111 133568999999999


Q ss_pred             CeEEEEccCCCeeEeE
Q psy18018        609 KLVCAVGSRNGTEETK  624 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~  624 (635)
                      +.+++.+...+...+.
T Consensus       177 ~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  177 STLVVLGRSAGGPVVR  192 (253)
T ss_pred             CEEEEEeCCCCCceeE
Confidence            9998888887764344

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PLN02193 nitrile-specifier protein

Probab=92.55  E-value=13  Score=37.46  Aligned_cols=159  Identities=13%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             EecCCEEEEEeCCC-----cEEEEECCCCceeEEecCC---CcccccEEEEEecCCEEEEEeCC----CcEEEEECCCCc
Q psy18018        463 ELRNNILVSGNADS-----TVKVWDIVSGQCLQTLSGR---NKHQSAVTCLQFNSRFVITSSDD----GTVKLWDVKTGE  530 (635)
Q Consensus       463 ~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~d----~~i~vwd~~~~~  530 (635)
                      ..++.+.+.|+.++     .+..||+.+.+-.. +...   ............+++.++.++.+    ..+.+||..+.+
T Consensus       276 ~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        276 ADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence            34566777776543     46778887654322 1110   01122223344578888877765    458999998876


Q ss_pred             eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC--------------CeEEEEeCCCCceEEeeeeccC--C
Q psy18018        531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD--------------GTVKLWDVKTGEFIRNLVSLDS--G  594 (635)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------~~v~iwd~~~~~~~~~~~~~~~--~  594 (635)
                      ........  ..|.....|.      +..-++++++.|+.+              +.+.++|+.+.+....- ....  .
T Consensus       355 W~~~~~~g--~~P~~R~~~~------~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~-~~~~~~~  425 (470)
T PLN02193        355 WTQVETFG--VRPSERSVFA------SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD-KFGEEEE  425 (470)
T ss_pred             EEEeccCC--CCCCCcceeE------EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc-cCCCCCC
Confidence            54332110  0010000111      122367888888853              25889999887764322 1110  0


Q ss_pred             CCCceEE----EEEeCCCCeEEEEccCCCe--eEeEEEEEeee
Q psy18018        595 GSGGVVW----RIRASETKLVCAVGSRNGT--EETKLLVLDFD  631 (635)
Q Consensus       595 ~~~~~i~----~l~~s~d~~~l~~~~~dg~--~~~~l~~~d~~  631 (635)
                      ....+-+    ......+..+++.|+.++.  .-=-+|.++.+
T Consensus       426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~  468 (470)
T PLN02193        426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID  468 (470)
T ss_pred             CCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence            0111111    2223444558888888532  12346766654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.55  E-value=8.6  Score=35.51  Aligned_cols=140  Identities=13%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             ecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceec
Q psy18018        464 LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       464 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      ..+.....++..|.|+.= ...++.-..+..  .....+..+..  ||++++++..-..+.-||--........+     
T Consensus       112 l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~--~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----  183 (302)
T PF14870_consen  112 LGDGSAELAGDRGAIYRT-TDGGKTWQAVVS--ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----  183 (302)
T ss_dssp             EETTEEEEEETT--EEEE-SSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE------
T ss_pred             cCCCcEEEEcCCCcEEEe-CCCCCCeeEccc--CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-----
Confidence            344544445555554322 223333232221  13455666665  67877777654444566644322111111     


Q ss_pred             CceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC-CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                            .-+..|.+|.|+||+.+.+++ ..|.|+.=+. ...+.-.. ...+.....-.+..|+|.++++..|+|+...
T Consensus       184 ------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  184 ------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGT  254 (302)
T ss_dssp             -------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred             ------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence                  135689999999999887755 7888888872 22332221 1111112334589999999999888777654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.42  E-value=3.8  Score=31.83  Aligned_cols=108  Identities=12%  Similarity=0.094  Sum_probs=68.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-----CCeEEEEecCCCeEEEEeCCCCce
Q psy18018        510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-----NSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       510 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      ..|++++.-|+|.|++..........    ...++..+.....|++++-.+     +...|+.|+ ...+..||+.....
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d   85 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGR----QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD   85 (136)
T ss_pred             eeEEEEecCCEEEEECCCcccccccc----ccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch
Confidence            46888888899999987754322211    345566667788888886544     345666666 55799999988765


Q ss_pred             EEeeeeccCCCCCceEEEEEe---CC-CCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        585 IRNLVSLDSGGSGGVVWRIRA---SE-TKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~i~~l~~---s~-d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      +..-      ...+.|.++.+   .. +..++++|+.-     .|+.||.+.+
T Consensus        86 ~Fyk------e~~DGvn~i~~g~~~~~~~~l~ivGGnc-----si~Gfd~~G~  127 (136)
T PF14781_consen   86 LFYK------EVPDGVNAIVIGKLGDIPSPLVIVGGNC-----SIQGFDYEGN  127 (136)
T ss_pred             hhhh------hCccceeEEEEEecCCCCCcEEEECceE-----EEEEeCCCCc
Confidence            5332      22345666665   22 45566666553     2777776543

>KOG2280|consensus

Probab=92.41  E-value=15  Score=37.83  Aligned_cols=50  Identities=12%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEecccce
Q psy18018        203 NTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~  253 (635)
                      -.|+|++. +|+++..+.-..+.+..+.|+ ...|+....||++.++++...
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence            45788885 577777766555688899996 778999999999999997654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.35  E-value=2.5  Score=40.78  Aligned_cols=138  Identities=14%  Similarity=0.190  Sum_probs=82.9

Q ss_pred             EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-------CCEEEEEeCCCcEEEEECCC-CceeEEecC-CCccccc
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-------NNILVSGNADSTVKVWDIVS-GQCLQTLSG-RNKHQSA  501 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-~~~~~~~  501 (635)
                      .|.....++-.|++-|+.+.+...|...+....+.       +..-++|-.+..|.-.|.+- +..+..... .......
T Consensus       485 dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~  564 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNK  564 (776)
T ss_pred             cCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccc
Confidence            35556678888888899999888887765444432       22334444555555556542 322222211 0001111


Q ss_pred             EEEE-EecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        502 VTCL-QFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       502 v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      -.+. .....++|.+|.-|.|++||.-.-.....++.           ....|..+..+.+|+++++.+. .++.+-|++
T Consensus       565 Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~-----------lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         565 FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG-----------LGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ccccccccCceEEEecCCCceeeehhhcchhhhcCcc-----------cccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            2222 22578999999999999999653332222222           4667888889999998886664 467777764

>PLN02153 epithiospecifier protein

Probab=92.34  E-value=11  Score=36.11  Aligned_cols=182  Identities=13%  Similarity=0.120  Sum_probs=93.7

Q ss_pred             ecCcEEEEecCC-------CeEEEEEccCCceEEeee-C--CCc---ceeEEEEeCCEEEEEeCC-----CcEEEEEccC
Q psy18018        351 FDGVHVVSGSLD-------TSIRVWEAESGNLRHTLM-G--HQS---LTSGMELRNNILVSGNAD-----STVKVWDIVS  412 (635)
Q Consensus       351 ~~~~~l~~~~~d-------g~i~v~~~~~~~~~~~~~-~--~~~---~v~~l~~~~~~l~s~~~d-----g~i~iwd~~~  412 (635)
                      .++..++.|+.+       ..+.+||..+.+-...-. +  ...   ......+.+.+++.|+.+     ..+.+||+.+
T Consensus        31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence            356666666653       357788877654322111 0  011   122344456666666653     2467778765


Q ss_pred             Cccee--------------EEEEEeeCCcEEEEEeCC-----------CcEEEEeCCCCceeee--ec---cCCccEEEE
Q psy18018        413 GTKKL--------------MFRICLFDGVHVVSGSLD-----------TSIRVWEAESGNLRHT--LM---GHQSLTSGM  462 (635)
Q Consensus       413 ~~~~~--------------~~~~~~~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~--~~---~~~~~v~~~  462 (635)
                      .+-..              .......+++.++.|+.+           ..+.+||..+.+-...  ..   .........
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~  190 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA  190 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence            43221              112234466667777643           2467788876543221  10   111122234


Q ss_pred             EecCCEEEEEeCC-------------CcEEEEECCCCceeEEec-C-CCcccccEEEEEecCCEEEEEeCC---------
Q psy18018        463 ELRNNILVSGNAD-------------STVKVWDIVSGQCLQTLS-G-RNKHQSAVTCLQFNSRFVITSSDD---------  518 (635)
Q Consensus       463 ~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~l~~~~~d---------  518 (635)
                      .+++++++.++.+             ..+.+||+.+.+-...-. + .........++.+++++++.|+..         
T Consensus       191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  270 (341)
T PLN02153        191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLG  270 (341)
T ss_pred             EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccc
Confidence            4567766665532             458889988765332211 0 001122334455578888888852         


Q ss_pred             -----CcEEEEECCCCcee
Q psy18018        519 -----GTVKLWDVKTGEFS  532 (635)
Q Consensus       519 -----~~i~vwd~~~~~~~  532 (635)
                           ..+..+|..+.+..
T Consensus       271 ~~~~~n~v~~~d~~~~~W~  289 (341)
T PLN02153        271 PGTLSNEGYALDTETLVWE  289 (341)
T ss_pred             cccccccEEEEEcCccEEE
Confidence                 25778888766543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.01  E-value=12  Score=36.16  Aligned_cols=197  Identities=18%  Similarity=0.161  Sum_probs=111.8

Q ss_pred             EEeCCEEEEEeCCCcEEEEEccCCcceeEEE-----------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc-
Q psy18018        390 ELRNNILVSGNADSTVKVWDIVSGTKKLMFR-----------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-  457 (635)
Q Consensus       390 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-  457 (635)
                      +..+..++.+..+|.+.-.|..++.......           ....+| .+..++.++.++.+|.++|+.......... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            3346667777888888888877776432111           122244 488888999999999999999888776651 


Q ss_pred             -cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc-ccccEEEEEecCCEEEEEeC--CCcEEEEECCCCceee
Q psy18018        458 -LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK-HQSAVTCLQFNSRFVITSSD--DGTVKLWDVKTGEFST  533 (635)
Q Consensus       458 -~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~  533 (635)
                       ...........+..++.++.+...|..+++.......... ..............++.+..  ++.+.-.|..+|+...
T Consensus       144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEee
Confidence             1111122344555555789999999998888777553211 00000111123334444444  6678888888888776


Q ss_pred             eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      .............. -...+..-..--++. +..++.++.+.-.|..+|+.+..+.
T Consensus       224 ~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         224 SQKVSQTIGRTAIS-TTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             eeeeecccCccccc-ccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEe
Confidence            64322111110000 000000000111222 2456667778888999999988884

>KOG1896|consensus

Probab=91.79  E-value=23  Score=38.73  Aligned_cols=217  Identities=11%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             eecC--CCC-CCccccccccceEEEEEecCCCCCCCceeecCCcchh----------eeeccceeeeeeecCCCCCCcee
Q psy18018         10 WRTR--PIK-DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKA----------LFMSHRSVEINWRTRPIKDPKVL   76 (635)
Q Consensus        10 ~~~~--~~~-~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~----------~~~~~~~~~~iwd~~~~~~~~~l   76 (635)
                      |+++  |.+ +++.+.=|...-+-+|..+    -.-+|.+++.+++.          ...+....+.+-++.+++.+..+
T Consensus       945 wPvkkIpl~~T~~~vvYh~e~~vy~v~t~----~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~i 1020 (1366)
T KOG1896|consen  945 WPVKKIPLRKTPHQVVYHYEKKVYAVITS----TPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKI 1020 (1366)
T ss_pred             CcccccccccchhheeeeccceEEEEEEe----ccceeeecccccccccccccccccccccccceeEEecCCcccccccc


Q ss_pred             eccCcceEEEEEEc-----------CCEEEEeeC---------CCcEEEEEC-----CCCcEEEEEeeCCCcEEEEeCCC
Q psy18018         77 KGHDDHVITCLQFS-----------GSRIVSGSD---------DNTLKVWSA-----TTGKCLLVSGSRDATLRVWHIES  131 (635)
Q Consensus        77 ~~h~~~vi~~~~~s-----------~~~l~s~~~---------d~~v~vWd~-----~~~~~ll~~~~~dg~i~vwd~~~  131 (635)
                      +-.+...+.++...           ..|||.|..         -|.+.++|+     +.|++.                +
T Consensus      1021 efq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~----------------t 1084 (1366)
T KOG1896|consen 1021 EFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF----------------T 1084 (1366)
T ss_pred             ccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc----------------c


Q ss_pred             CeEEEEee--CCCcceEEEEe-cCCEEEEEeCCCeEEEEeC-CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEE
Q psy18018        132 GECLHVLV--GHLAAVRCVQY-DGKLVVSGAYDYMVKIWNP-DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKV  207 (635)
Q Consensus       132 ~~~~~~l~--~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v  207 (635)
                      ...+..+-  .-.++|..++- +|.++.+-+  -.|.+|++ +..+.+...+...+........-.++++.|.--..|.+
T Consensus      1085 ~~KlKel~~eE~KGtVsavceV~G~l~~~~G--qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisf 1162 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEVRGHLLSSQG--QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISF 1162 (1366)
T ss_pred             cceeeeeehhhcccceEEEEEeccEEEEccC--cEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEE


Q ss_pred             EECCCCeEEEEEeCCCC---CeEEEEe----eCCEEEEeeCceeEEEe
Q psy18018        208 WSATTGKCLRTLIGHTG---GVWSSQM----AGNIIISGSTDRTLKGW  248 (635)
Q Consensus       208 wd~~~~~~~~~~~~h~~---~v~~~~~----~~~~l~s~~~dg~i~~w  248 (635)
                      ...+..-....+-+...   .+.++.|    +.-.++.+..|+.|+++
T Consensus      1163 l~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1163 LGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred             EEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE

>KOG3630|consensus

Probab=91.73  E-value=4.3  Score=43.52  Aligned_cols=134  Identities=10%  Similarity=-0.017  Sum_probs=82.5

Q ss_pred             EEEeCCCcEEEEECCCCceeE-----EecC---CCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018        470 VSGNADSTVKVWDIVSGQCLQ-----TLSG---RNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       470 ~s~~~dg~i~iwd~~~~~~~~-----~~~~---~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      +..+.+-.|..||+++...-.     .+..   ......-..++.|+   ....+....|+.|++..+........    
T Consensus       118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~----  193 (1405)
T KOG3630|consen  118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT----  193 (1405)
T ss_pred             EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc----
Confidence            334445578899987543221     1111   00012223455554   33456677788888877653321111    


Q ss_pred             eecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                             ........++++|+|.|+.+++|...|++.-|... ++....+...+. .....|.+|.|-..-.+|++-+
T Consensus       194 -------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~-~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  194 -------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV-EENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             -------ccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc-CCCcceeEEEEecceeEEEEec
Confidence                   11245678999999999999999999999999854 554444433222 2257899999988888877654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.72  E-value=9.4  Score=39.57  Aligned_cols=69  Identities=12%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             cEEEEEec----CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-----cCC---EEEEEeCCCcEEEEE
Q psy18018        458 LTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-----NSR---FVITSSDDGTVKLWD  525 (635)
Q Consensus       458 ~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~---~l~~~~~d~~i~vwd  525 (635)
                      .+.++++.    .+++|+++....|.||-...............+...|.+++|     ++.   .+++++-.|.+.+|+
T Consensus       165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            56667765    457888888888888866542111111101125667888998     222   788899999999988


Q ss_pred             C
Q psy18018        526 V  526 (635)
Q Consensus       526 ~  526 (635)
                      +
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            8

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.69  E-value=0.66  Score=40.52  Aligned_cols=69  Identities=17%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             ccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec---cCC------CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL---DSG------GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       558 ~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~------~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      +..++.+|++.+.+|.+++||+.+++.+..-..+   -..      .....|..+..+.+|.-|++-+. |.    .|.|
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~----~y~y   92 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GD----SYSY   92 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CC----EEEe
Confidence            3457889999999999999999998875443111   111      35678999999999988777654 54    4555


Q ss_pred             eee
Q psy18018        629 DFD  631 (635)
Q Consensus       629 d~~  631 (635)
                      |.+
T Consensus        93 ~~~   95 (219)
T PF07569_consen   93 SPD   95 (219)
T ss_pred             ccc
Confidence            543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.56  E-value=8.3  Score=37.42  Aligned_cols=192  Identities=11%  Similarity=0.124  Sum_probs=101.4

Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE-EEecCCCeEEEEE
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV-VSGSLDTSIRVWE  369 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~v~~  369 (635)
                      ......+.|..+...+..++..+.+.-...+..-+.......... ......+...+-...+...+ ..|.....++-.|
T Consensus       418 ~Ns~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~-~GKSidp~K~mlh~~dssli~~dg~~~~kLykmD  496 (776)
T COG5167         418 KNSHLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDD-GGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMD  496 (776)
T ss_pred             cCceEEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCC-CCCcCChhhceeecCCcceEEecCCCcccceeee
Confidence            344555556566555555555555544443322222211111111 11111222223233344444 3466667788889


Q ss_pred             ccCCceEEeeeCCCcceeEEEEe-------CCEEEEEeCCCcEEEEEccC-CcceeEEEE--------E----eeCCcEE
Q psy18018        370 AESGNLRHTLMGHQSLTSGMELR-------NNILVSGNADSTVKVWDIVS-GTKKLMFRI--------C----LFDGVHV  429 (635)
Q Consensus       370 ~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--------~----~~~~~~l  429 (635)
                      +..|+.+..+..|...+......       +..-+.|-.+..|.-.|.+- +..+.....        |    .....++
T Consensus       497 IErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyI  576 (776)
T COG5167         497 IERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYI  576 (776)
T ss_pred             cccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceE
Confidence            99999999998887764333221       22233344444444444432 222222211        1    2356789


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIV  484 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~  484 (635)
                      ++++..|.|++||.-.-.....+.+-...|..+..  +|+.+++.|.. .+.+-|++
T Consensus       577 a~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         577 AAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             EEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            99999999999997655555555655556665554  67766665543 46666653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.29  E-value=3.2  Score=42.28  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=66.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe----cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018        467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       467 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                      +..++-+....+.|||.+.+....+-..  .....|..+.|    +++.+++.+-.+.|.++.-.........+.-....
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            3333444455799999988774433321  25778999998    68888888888899998643211111111111111


Q ss_pred             ceeEEecc-CceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        543 PFYFLIYS-QPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       543 ~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      .+....+. .+|....|.+||.+++.++  +.+.|+|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            12222233 6889999999998887654  45888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.23  E-value=1.6  Score=38.62  Aligned_cols=95  Identities=16%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             CCEEEEEeCCCc-EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----CeEEEEeCCCC
Q psy18018        509 SRFVITSSDDGT-VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GTVKLWDVKTG  582 (635)
Q Consensus       509 ~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~  582 (635)
                      +.-++.+-.-|+ ..++|....+....+...   ...-+..|.      .|||||++|...-.|     |.|-|||...+
T Consensus        80 ~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          80 PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             cceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            334444444443 457788777665554331   111122333      599999999865433     78999998743


Q ss_pred             -ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        583 -EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       583 -~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                       ..+.++     ..|.-.-..|.+.+||+.|+.+..
T Consensus       151 fqrvgE~-----~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         151 FQRVGEF-----STHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cceeccc-----ccCCcCcceeEEecCCcEEEEeCC
Confidence             344555     456666678899999999987754

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.11  E-value=11  Score=37.59  Aligned_cols=150  Identities=9%  Similarity=0.081  Sum_probs=84.0

Q ss_pred             ccEEEEEe-cCCEEEEEe---CCCcEEEEECCCCceeEEecCCCcccccEEEEEec------CCEEEEEeCCCcEEEEEC
Q psy18018        457 SLTSGMEL-RNNILVSGN---ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN------SRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       457 ~~v~~~~~-~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~d~~i~vwd~  526 (635)
                      .++.+++| ||+.++-..   .+|.+++=   +.+.+..|.       .|..++|.      ...|.+.-....|.||-+
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viGqFE-------hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIGQFE-------HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccC---CccEeeccc-------eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            36778888 566443322   23333332   233444443       36777772      334555556788999998


Q ss_pred             CCC-----ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEE
Q psy18018        527 KTG-----EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVW  601 (635)
Q Consensus       527 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~  601 (635)
                      ...     +.+.....+ ...+     +.---..+.|+|....|++-.....-.++++......-...    -...+.|.
T Consensus        90 ~~s~~e~~K~l~sQtcE-i~e~-----~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD----i~~~G~Ih  159 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCE-IREP-----FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD----IKTSGLIH  159 (671)
T ss_pred             ccCccccccceeeeeee-ccCC-----cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe----ccCCceEE
Confidence            622     111111000 0001     11122456799999988876655544556665433222221    13567899


Q ss_pred             EEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        602 RIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       602 ~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +.+|.+||+.|+++-.+.   +.-|.||
T Consensus       160 CACWT~DG~RLVVAvGSs---LHSyiWd  184 (671)
T PF15390_consen  160 CACWTKDGQRLVVAVGSS---LHSYIWD  184 (671)
T ss_pred             EEEecCcCCEEEEEeCCe---EEEEEec
Confidence            999999999888877663   5677776

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.07  E-value=16  Score=35.59  Aligned_cols=58  Identities=19%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeC--CCCCeEEEEeeCCEEEEeeCceeEEEeccc
Q psy18018        193 RSRIVSGSDDNTLKVWSATTGKCLRTLIG--HTGGVWSSQMAGNIIISGSTDRTLKGWSNA  251 (635)
Q Consensus       193 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~  251 (635)
                      .+.+.+-+-||.+.+++-+.-.....+..  ..+|+.- ....+.|++++.+..+..|...
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y-~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCY-CPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEE-eecCCEEEEecCceeEEEecHH
Confidence            36788889999999998665443344433  2333321 2246778888888888888754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.78  E-value=1.1  Score=26.57  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=23.3

Q ss_pred             CCCeEEEEec-CCCeEEEEeCCCCceEEeee
Q psy18018        560 FNSRFVITSS-DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       560 ~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~  589 (635)
                      |++++|.++. .++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677666544 57899999999999888774

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.53  E-value=10  Score=34.16  Aligned_cols=124  Identities=11%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             ccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEE
Q psy18018        498 HQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVK  575 (635)
Q Consensus       498 ~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~  575 (635)
                      ....+.++.|+  .+.|++......-.|+=-..|+++..+......          .--.+++.-++++.++--.++.+.
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----------DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----------DPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC----------ChhHeEEecCCEEEEEehhcceEE
Confidence            44458999994  677777777777777777778888877654322          233456666888888888889999


Q ss_pred             EEeCCCCceEEeeee----ccCCCC-CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        576 LWDVKTGEFIRNLVS----LDSGGS-GGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       576 iwd~~~~~~~~~~~~----~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      ++.+........+..    +....+ +...-.++|+|..+.|.++-+-.-  ++||.++..++
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I~~~~~~~~  214 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGIFEVTQSPS  214 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEEEEEecCCc
Confidence            888776643332221    111222 567889999999999999988776  66777765543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.39  E-value=4.6  Score=42.41  Aligned_cols=83  Identities=11%  Similarity=0.140  Sum_probs=50.8

Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCC----------ceeeeeccceecCceeEEeccCceecccccCC---CeEE
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTG----------EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFV  565 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l  565 (635)
                      .|..+..  +|.+++..+..| |.|-.+...          +.....+.......+........|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4566666  588999888765 666555421          11111111111111112234557889999996   5788


Q ss_pred             EEecCCCeEEEEeCCCCce
Q psy18018        566 ITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~~  584 (635)
                      ++-..|+++|+||+...+.
T Consensus       165 ~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EEEecCCEEEEEecCCCCC
Confidence            8899999999999976443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.97  E-value=11  Score=35.57  Aligned_cols=134  Identities=13%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             cccEEEEEe--cCCEEEEEeCCCc------EEEEECCCCc----eeeeeccceecCce--eEEeccCceecccccCCCeE
Q psy18018        499 QSAVTCLQF--NSRFVITSSDDGT------VKLWDVKTGE----FSTPLMSSFILNPF--YFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       499 ~~~v~~~~~--~~~~l~~~~~d~~------i~vwd~~~~~----~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~  564 (635)
                      -+.+..+.+  ++..+++.+++|.      +..+++....    .+..........+.  .........-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            345667777  3566777777777      6666655410    00000000000000  00001114457888788888


Q ss_pred             EEEecCC------CeEEEEeCCCCceEEeeee---c-------cCCCCCceEEEEEeCCCCeEEEEccCCC-----eeE-
Q psy18018        565 VITSSDD------GTVKLWDVKTGEFIRNLVS---L-------DSGGSGGVVWRIRASETKLVCAVGSRNG-----TEE-  622 (635)
Q Consensus       565 l~~~~~d------~~v~iwd~~~~~~~~~~~~---~-------~~~~~~~~i~~l~~s~d~~~l~~~~~dg-----~~~-  622 (635)
                      +++.-.+      ..|.-++.. |+.+..+..   +       .....+...-+|+++|||+.|.++.+..     ... 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8877666      788888876 777665521   1       1123567899999999999776665444     222 


Q ss_pred             ------eEEEEEeeecC
Q psy18018        623 ------TKLLVLDFDVD  633 (635)
Q Consensus       623 ------~~l~~~d~~~~  633 (635)
                            ++|+.+|...+
T Consensus       178 ~~~~~~~ri~~~d~~~~  194 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTP  194 (326)
T ss_pred             cccCceEEEEEecCCCC
Confidence                  78888887653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=89.70  E-value=17  Score=33.79  Aligned_cols=123  Identities=10%  Similarity=0.045  Sum_probs=69.5

Q ss_pred             EEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeC-CCcEEEEECCC--CceeeeeccceecCceeEEeccCc
Q psy18018        478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       478 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      ++-+|. .+...+.+..   +-..-+.++|  |++.|+.+.. .+.|.-|++..  +..... .     ..+......+.
T Consensus       145 lyr~~p-~g~~~~l~~~---~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~-----~~~~~~~~~G~  214 (307)
T COG3386         145 LYRVDP-DGGVVRLLDD---DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-R-----GFVDFDEEPGL  214 (307)
T ss_pred             EEEEcC-CCCEEEeecC---cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-c-----eEEEccCCCCC
Confidence            444443 4555555543   3344455666  6777666654 47788887763  211111 0     00111112344


Q ss_pred             eecccccCCCeEEEEecCCC-eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEcc
Q psy18018        553 LLCPHLQFNSRFVITSSDDG-TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGS  616 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~  616 (635)
                      .-.++...+|.+-+++..+| .|.+|+.. |+++..+.     -....+++++|-. +.+.|.+.+
T Consensus       215 PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-----lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         215 PDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-----LPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-----CCCCCCccceEeCCCcCEEEEEe
Confidence            55667777888886555554 89999988 99988884     2335677888854 444444333

>KOG2377|consensus

Probab=89.59  E-value=4  Score=38.80  Aligned_cols=85  Identities=6%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeE
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETK  624 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~  624 (635)
                      ......++|.++.||+|.+.||+--.|++|.+.+....+...... ..-......|....|+.. .-+|.....|   +-
T Consensus        61 fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i~~~G---~e  135 (657)
T KOG2377|consen   61 FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFITDQG---IE  135 (657)
T ss_pred             eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEEecCC---eE
Confidence            344457799999999999999999999999999985544433321 111234556999999876 6667777777   46


Q ss_pred             EEEEeeecCC
Q psy18018        625 LLVLDFDVDS  634 (635)
Q Consensus       625 l~~~d~~~~~  634 (635)
                      +|..+++.++
T Consensus       136 ~y~v~pekrs  145 (657)
T KOG2377|consen  136 FYQVLPEKRS  145 (657)
T ss_pred             EEEEchhhhh
Confidence            7777776543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.47  E-value=20  Score=36.09  Aligned_cols=120  Identities=17%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEe--------------CCCcEEEEECCC
Q psy18018        465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS--------------DDGTVKLWDVKT  528 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~--------------~d~~i~vwd~~~  528 (635)
                      ++++++...  ..++.+|+. |+.+...........--..+..  +|++|+.+.              .| .|...| .+
T Consensus       158 nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~t  232 (477)
T PF05935_consen  158 NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD-PT  232 (477)
T ss_dssp             TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TT
T ss_pred             CCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC-CC
Confidence            455554443  678888875 6655554432211000111222  678887777              23 366667 77


Q ss_pred             CceeeeeccceecCceeE----------------EeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        529 GEFSTPLMSSFILNPFYF----------------LIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      |+.+.......+..+...                ...--.++++.+.+ ++.+|+++-.-..|...|.++++....+.
T Consensus       233 G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  233 GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence            777666544333322211                00112578889988 77888888777799999999999887774

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900|consensus

Probab=89.46  E-value=3  Score=45.37  Aligned_cols=144  Identities=16%  Similarity=0.259  Sum_probs=78.3

Q ss_pred             CCCcEEEEeCCCCceeeeeccCCccEEEEEe---cC-------CEEEEEeCCCcEEEEECCCCcee---------EEecC
Q psy18018        434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL---RN-------NILVSGNADSTVKVWDIVSGQCL---------QTLSG  494 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~---~~-------~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~  494 (635)
                      -|+.+.+|+.+++.....+.+-...|..+..   .+       ++++....--.|.++-+.-.+..         ..+..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            4666777777776666666666665555543   22       13333333444666544321111         11111


Q ss_pred             CCcccccEEEEEe--cCCEEEEEeCCCcEEE--EECCCCceeeeec----cce----ecCce--eEEeccCceecccccC
Q psy18018        495 RNKHQSAVTCLQF--NSRFVITSSDDGTVKL--WDVKTGEFSTPLM----SSF----ILNPF--YFLIYSQPLLCPHLQF  560 (635)
Q Consensus       495 ~~~~~~~v~~~~~--~~~~l~~~~~d~~i~v--wd~~~~~~~~~~~----~~~----~~~~~--~~~~~~~~v~~~~~s~  560 (635)
                         ....|.|+..  +|+.+++| .||.|+-  |....+-......    ...    ....+  ....+..+|..+++..
T Consensus       177 ---dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  177 ---DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             ---CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence               3456788886  46655555 5665542  2223322111110    000    00000  0123567899999998


Q ss_pred             CCeEEEEecCCCeEEEEeCCC
Q psy18018        561 NSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       561 ~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ....|.+-++.|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            889999999999999999976

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.19  E-value=16  Score=32.71  Aligned_cols=212  Identities=15%  Similarity=0.127  Sum_probs=112.3

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecC-CCCCCceeeccCcceEEEEEEc--CCEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTR-PIKDPKVLKGHDDHVITCLQFS--GSRI   94 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~-~~~~~~~l~~h~~~vi~~~~~s--~~~l   94 (635)
                      .++|.||.       .||    |||+||-..+.+.   -....++=|||.. ..+.+.++..|.=.. ..+.+.  |++|
T Consensus       112 ~RHfyGHG-------vfs----~dG~~LYATEndf---d~~rGViGvYd~r~~fqrvgE~~t~GiGp-Hev~lm~DGrtl  176 (366)
T COG3490         112 GRHFYGHG-------VFS----PDGRLLYATENDF---DPNRGVIGVYDAREGFQRVGEFSTHGIGP-HEVTLMADGRTL  176 (366)
T ss_pred             Cceeeccc-------ccC----CCCcEEEeecCCC---CCCCceEEEEecccccceecccccCCcCc-ceeEEecCCcEE
Confidence            35666775       377    9999998877664   3456777789987 345666777776555 566666  8877


Q ss_pred             EEeeCCCcEEEE-ECCCCcEEEEEeeCCCcEEEEeCCCCeEEE--Eee--CCCcceEEEEe--cCCEEEEEeCCCe----
Q psy18018         95 VSGSDDNTLKVW-SATTGKCLLVSGSRDATLRVWHIESGECLH--VLV--GHLAAVRCVQY--DGKLVVSGAYDYM----  163 (635)
Q Consensus        95 ~s~~~d~~v~vW-d~~~~~~ll~~~~~dg~i~vwd~~~~~~~~--~l~--~h~~~v~~l~~--~~~~l~s~~~dg~----  163 (635)
                      +.+.  |-|..- |.  |+.-|-.-+...++.+-|..+++.+.  +|.  -+.-.|..++.  ||...+-+-..|.    
T Consensus       177 vvan--GGIethpdf--gR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~  252 (366)
T COG3490         177 VVAN--GGIETHPDF--GRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL  252 (366)
T ss_pred             EEeC--Cceeccccc--CccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence            7653  333332 11  12112223344556666656665543  333  35556777777  4444444332221    


Q ss_pred             -EEEEeCCCccceeeccccce--------eEEeeeccCCC-EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeC
Q psy18018        164 -VKIWNPDTEECLHAELQETE--------VELSHGYALRS-RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAG  233 (635)
Q Consensus       164 -v~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  233 (635)
                       -.+=-...++.+..+.....        +-......... ..++.-..+...+||..+|..+..-.  -.....+....
T Consensus       253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~  330 (366)
T COG3490         253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAK  330 (366)
T ss_pred             CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceecc
Confidence             00001111222221111111        01111111123 33444455677899999998875432  12233444556


Q ss_pred             CEEEEeeCceeEEEecc
Q psy18018        234 NIIISGSTDRTLKGWSN  250 (635)
Q Consensus       234 ~~l~s~~~dg~i~~w~~  250 (635)
                      .-++..+.+|.+.+++-
T Consensus       331 ~gf~vssg~G~~~~~s~  347 (366)
T COG3490         331 GGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             CceEEecCCceEEeccc
Confidence            66777777888888753

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.87  E-value=22  Score=34.00  Aligned_cols=58  Identities=10%  Similarity=0.064  Sum_probs=30.4

Q ss_pred             EEEecCCEEEEEeCC-----------CcEEEEECCCCceeEEecCCCcccccEEEE-EecCCEEEEEeCC
Q psy18018        461 GMELRNNILVSGNAD-----------STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-QFNSRFVITSSDD  518 (635)
Q Consensus       461 ~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~d  518 (635)
                      ....++++.+.|+.+           ..+..||+.+.+-................+ ..+++..+.|+.+
T Consensus        59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            344567777777653           247778887654322211100111122233 3578888888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.78  E-value=14  Score=38.01  Aligned_cols=95  Identities=9%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             EeCCCcEEEEeCCCCceeeeec-cCCccEEEEEe----cCCEEEEEeCCCcEEEEECC---------CCceeEEecCCCc
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMEL----RNNILVSGNADSTVKVWDIV---------SGQCLQTLSGRNK  497 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~----~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~  497 (635)
                      -.....+.+||...+.+..+-. .....|..+.|    +++.+++.|-...|.+|.-.         +..+++.+.-...
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~  126 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH  126 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence            3345578899988776543322 35678888887    56788888888889988542         1233444432222


Q ss_pred             ccccEEEEEe-cCCEEEEEeCCCcEEEEECC
Q psy18018        498 HQSAVTCLQF-NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       498 ~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~  527 (635)
                      ...+|....| .+..|++|+ .+.+.|+|-.
T Consensus       127 T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  127 TPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             CCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence            3356778888 444555554 4568888744

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916|consensus

Probab=88.51  E-value=0.11  Score=53.01  Aligned_cols=155  Identities=18%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      +..++..+..++.|++...++... ..+++|...+..+++- .+++...+                     .+|||..++
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~---------------------lSpDGtv~a  251 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS---------------------LSPDGTVFA  251 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee---------------------eCCCCcEEE
Confidence            567778888889999988765443 5667798888888774 33322221                     457777777


Q ss_pred             EEeCCCcEEEEeCC-----CCceeeeeccCCc-cEEEEEecCC-----------EEEEE-eCCCcEEEEECCCCceeEEe
Q psy18018        431 SGSLDTSIRVWEAE-----SGNLRHTLMGHQS-LTSGMELRNN-----------ILVSG-NADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       431 ~~~~d~~i~~~d~~-----~~~~~~~~~~~~~-~v~~~~~~~~-----------~l~s~-~~dg~i~iwd~~~~~~~~~~  492 (635)
                      .+..||.+++|.+.     ...++...+.|.+ +-.|.-++.+           +++++ ..+..+++|.....+|+-.+
T Consensus       252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~  331 (1283)
T KOG1916|consen  252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK  331 (1283)
T ss_pred             EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh
Confidence            77788877776542     2344555666663 2223223211           33333 34566999988776666211


Q ss_pred             -----cCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCC
Q psy18018        493 -----SGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       493 -----~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~  528 (635)
                           ..-.+|...|+.+..   --..++.-+-++.|.+|.-..
T Consensus       332 ~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  332 LIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             cccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence                 111123333332111   112345566678888886443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.50  E-value=23  Score=33.57  Aligned_cols=124  Identities=12%  Similarity=0.095  Sum_probs=73.0

Q ss_pred             cCCEEEEEeCC------CcEEEEECCCCceeeeeccceecCce----eEEeccCceecccccCCCeEEEEecCCC-----
Q psy18018        508 NSRFVITSSDD------GTVKLWDVKTGEFSTPLMSSFILNPF----YFLIYSQPLLCPHLQFNSRFVITSSDDG-----  572 (635)
Q Consensus       508 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----  572 (635)
                      ++.++++.-.+      ..|+.++.. |+....+.......+.    .....+...-+|+++|||+.|+++.+..     
T Consensus        95 ~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   95 DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence            67777776666      778888877 6665555221111000    2233566788999999999666654322     


Q ss_pred             --e-------EEEE--eCCC-CceEEeeeeccCC----CCCceEEEEEeCCCCeEEEEccCC---CeeEeEEEEEeeec
Q psy18018        573 --T-------VKLW--DVKT-GEFIRNLVSLDSG----GSGGVVWRIRASETKLVCAVGSRN---GTEETKLLVLDFDV  632 (635)
Q Consensus       573 --~-------v~iw--d~~~-~~~~~~~~~~~~~----~~~~~i~~l~~s~d~~~l~~~~~d---g~~~~~l~~~d~~~  632 (635)
                        .       ++|+  |..+ ++...++......    .....+..+.+-+|+++|+.==..   .....+|+.+|+..
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence              1       4454  5544 3333333221110    145678999999999966643221   33468899888764

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.42  E-value=26  Score=34.09  Aligned_cols=57  Identities=12%  Similarity=0.095  Sum_probs=28.5

Q ss_pred             EEecCCEEEEEeCC-----------CcEEEEECCCCceeEEecCCCcccccEEEEE-ecCCEEEEEeCC
Q psy18018        462 MELRNNILVSGNAD-----------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ-FNSRFVITSSDD  518 (635)
Q Consensus       462 ~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~d  518 (635)
                      ...++.+.+.|+..           ..+..||..+.+-...-...........++. .++++.+.|+.+
T Consensus        81 v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         81 AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            34456666666643           2477788776543221111000111223344 578888888754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.90  E-value=30  Score=34.23  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             CcEEEEeCCCCce---eeeeccCCc--cEEEEEecCCEEE-EEeCCC--cEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        436 TSIRVWEAESGNL---RHTLMGHQS--LTSGMELRNNILV-SGNADS--TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       436 ~~i~~~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      +.|...++.+...   ...+..+..  .+..+...++.|+ ....++  .|+++++..+.....+..+  ..+.|..+..
T Consensus       301 ~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~~~~  378 (414)
T PF02897_consen  301 GRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSGVSG  378 (414)
T ss_dssp             -EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEEEES
T ss_pred             cEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCC--cceEEeccCC
Confidence            3344444544432   224444444  5666776666444 444443  4888998844545555442  2344555554


Q ss_pred             --c-CCEEEEEeC---CCcEEEEECCCCcee
Q psy18018        508 --N-SRFVITSSD---DGTVKLWDVKTGEFS  532 (635)
Q Consensus       508 --~-~~~l~~~~~---d~~i~vwd~~~~~~~  532 (635)
                        + ..+.++.+.   -+++..||+.+++..
T Consensus       379 ~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  379 DFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             -TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             CCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence              2 333333332   256888899888743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2247|consensus

Probab=87.62  E-value=0.14  Score=48.49  Aligned_cols=138  Identities=12%  Similarity=0.169  Sum_probs=90.1

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--C-CEEEEeeCceeEEEecccceeeeccccccccCcc
Q psy18018        191 ALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--G-NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPT  267 (635)
Q Consensus       191 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  267 (635)
                      +.+..++.++.+..+..||-. ++..... ..++....++|+  + ..++.+-..+.+.+|++.++.....         
T Consensus        44 ~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL---------  112 (615)
T KOG2247|consen   44 PEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL---------  112 (615)
T ss_pred             cCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH---------
Confidence            344558888888888888843 3333332 234455566665  3 3456667789999999876421100         


Q ss_pred             ceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceE
Q psy18018        268 QIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLF  347 (635)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (635)
                                                                                           .....+.....
T Consensus       113 ---------------------------------------------------------------------E~gg~~s~sll  123 (615)
T KOG2247|consen  113 ---------------------------------------------------------------------ESGGTSSKSLL  123 (615)
T ss_pred             ---------------------------------------------------------------------hccCcchHHHH
Confidence                                                                                 01111222224


Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEE
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVW  408 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iw  408 (635)
                      .+++....++.+...|.+.+++..+.+.+-..-.|..++.++++. +++.+.++.|..+.+-
T Consensus       124 ~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  124 AWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT  185 (615)
T ss_pred             hhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence            477777778888899999999988777766665688999999998 6777777777655443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.60  E-value=42  Score=35.64  Aligned_cols=90  Identities=10%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccC-CceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      +.-+.++|+|.+++..+..| |.|..+.. .-....+.+-...+.|-.+. +..++.......|+            ...
T Consensus        87 v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~------------qv~  153 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIK------------QVR  153 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEE------------EEE
Confidence            33456889999999988876 44444432 11112333334445544443 33333222222111            111


Q ss_pred             E---eeCCcEEEEEeCCCcEEEEeCCCC
Q psy18018        422 C---LFDGVHVVSGSLDTSIRVWEAESG  446 (635)
Q Consensus       422 ~---~~~~~~l~~~~~d~~i~~~d~~~~  446 (635)
                      +   +.++.+|++-+.|+++++||+...
T Consensus       154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  154 WHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            2   335678888888888888888653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.17  E-value=17  Score=36.02  Aligned_cols=30  Identities=20%  Similarity=0.531  Sum_probs=25.4

Q ss_pred             ceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      .|.+++..+..++|++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            499999999999999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=85.93  E-value=30  Score=32.29  Aligned_cols=221  Identities=12%  Similarity=0.087  Sum_probs=104.6

Q ss_pred             cCcEEEEecCCCeEEEEEccC--CceEEeeeCCCcceeEEEEe--CCE-EEEEeCCCcEEEEEccCCcce----------
Q psy18018        352 DGVHVVSGSLDTSIRVWEAES--GNLRHTLMGHQSLTSGMELR--NNI-LVSGNADSTVKVWDIVSGTKK----------  416 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~--~~~~~~~~~~~~~v~~l~~~--~~~-l~s~~~dg~i~iwd~~~~~~~----------  416 (635)
                      ++++++.|+++| +.+.+...  ++..+.+  +...|+++...  .+. ++.++....++.+++..-...          
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            346899999998 44555553  2333332  34578888775  333 344444455999987432210          


Q ss_pred             ---------------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCC--c--eeeee---c-cCCccEEEEE----ecCCEE
Q psy18018        417 ---------------LMFRICLFDGVHVVSGSLDTSIRVWEAESG--N--LRHTL---M-GHQSLTSGME----LRNNIL  469 (635)
Q Consensus       417 ---------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~--~~~~~---~-~~~~~v~~~~----~~~~~l  469 (635)
                                     ..+.........++++....+|.++.....  +  ....+   . .-..++..+.    +....+
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence                           000011111223445556667777654322  1  11110   0 0112222222    224467


Q ss_pred             EEEeCCCcEEEEECCC--CceeE---EecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCce
Q psy18018        470 VSGNADSTVKVWDIVS--GQCLQ---TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF  544 (635)
Q Consensus       470 ~s~~~dg~i~iwd~~~--~~~~~---~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  544 (635)
                      ..|+..+...++++..  ...-.   .+........++.....+...++.+.++. ...-|........          .
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~-~v~Vn~~G~~~~r----------~  237 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEF-GVFVNLYGKRRSR----------N  237 (302)
T ss_pred             EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcE-EEEEeCCCCcccc----------c
Confidence            7776653355555532  11000   00000001145555555444444444443 3333443211111          0


Q ss_pred             eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ..+.+.....++++.  ..||+.-+ +..|.|+++.+++.++.+.
T Consensus       238 ~~l~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      238 PILHWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             eEEEcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence            112245555666665  46666555 4559999999999988883

Unpublished observations.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.72  E-value=29  Score=32.01  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=82.1

Q ss_pred             cEEEEECCCCceeEEecCCCc---ccccEEEEEecC-------CEEEEEe-CCCcEEEEECCCCceeeeeccceecCce-
Q psy18018        477 TVKVWDIVSGQCLQTLSGRNK---HQSAVTCLQFNS-------RFVITSS-DDGTVKLWDVKTGEFSTPLMSSFILNPF-  544 (635)
Q Consensus       477 ~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~-------~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~-  544 (635)
                      +|.+||+.+++.++.+..+..   ..+....+..|.       .+...+. ..+-|.|+|+.+++.-+.........+. 
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            578899999988887765321   245677777753       2333333 3457999999998876666554433331 


Q ss_pred             -------eEEeccCceecccccC---CCeEEEEecCCCeEEEEeCCCC-----c---------eEEeeeeccCCCCCceE
Q psy18018        545 -------YFLIYSQPLLCPHLQF---NSRFVITSSDDGTVKLWDVKTG-----E---------FIRNLVSLDSGGSGGVV  600 (635)
Q Consensus       545 -------~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~v~iwd~~~~-----~---------~~~~~~~~~~~~~~~~i  600 (635)
                             ........+..++.+|   ++++|.-..-.+ -++|.+++.     .         .+..+     +...+..
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-----G~k~~~s  188 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-----GDKGSQS  188 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-----EE---SE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-----cccCCCC
Confidence                   1222334466666655   777777554333 233433321     1         11111     0111355


Q ss_pred             EEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        601 WRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       601 ~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ..++.+++|.+..+--+...    |+.||.+.
T Consensus       189 ~g~~~D~~G~ly~~~~~~~a----I~~w~~~~  216 (287)
T PF03022_consen  189 DGMAIDPNGNLYFTDVEQNA----IGCWDPDG  216 (287)
T ss_dssp             CEEEEETTTEEEEEECCCTE----EEEEETTT
T ss_pred             ceEEECCCCcEEEecCCCCe----EEEEeCCC
Confidence            67888999998888888776    77777654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4460|consensus

Probab=85.64  E-value=13  Score=36.41  Aligned_cols=80  Identities=10%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             cCCEEEEEeCCCcEEEEEC----------CCCceeeeeccceecCceeEEeccCceecccccCCC---eEEEEecCCCeE
Q psy18018        508 NSRFVITSSDDGTVKLWDV----------KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS---RFVITSSDDGTV  574 (635)
Q Consensus       508 ~~~~l~~~~~d~~i~vwd~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~v  574 (635)
                      .|..++..+.+|.+.+ .+          ++|+.....+.-.....++.....-.+..++|+|+.   ..|..-..|+.+
T Consensus       114 ~GS~VaL~G~~Gi~vM-eLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnvi  192 (741)
T KOG4460|consen  114 TGSHVALIGIKGLMVM-ELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVI  192 (741)
T ss_pred             CCceEEEecCCeeEEE-EchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEE
Confidence            3777777777874433 33          233322222221111222222223356778899976   567777889999


Q ss_pred             EEEeCCCCceEEee
Q psy18018        575 KLWDVKTGEFIRNL  588 (635)
Q Consensus       575 ~iwd~~~~~~~~~~  588 (635)
                      |+||+.....+...
T Consensus       193 Riy~lS~~telylq  206 (741)
T KOG4460|consen  193 RIYSLSEPTELYLQ  206 (741)
T ss_pred             EEEecCCcchhhcc
Confidence            99999887766443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.49  E-value=37  Score=32.92  Aligned_cols=134  Identities=13%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             CCcEEEEeCCCCceeeeeccCCc--cEEEEEe--cCC---EEEEEeCCCcEEEE-ECCCCc----eeEEecCCC------
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQS--LTSGMEL--RNN---ILVSGNADSTVKVW-DIVSGQ----CLQTLSGRN------  496 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~--~~~---~l~s~~~dg~i~iw-d~~~~~----~~~~~~~~~------  496 (635)
                      ..++.+||+.+.+.++++.-...  ....+.|  ++.   -++.+--..+|..| .-..++    .+..+....      
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            46899999999999999876543  3344555  222   23333333444443 323332    122222100      


Q ss_pred             --------cccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeeeeccceec--------CceeEEeccCceeccc
Q psy18018        497 --------KHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEFSTPLMSSFIL--------NPFYFLIYSQPLLCPH  557 (635)
Q Consensus       497 --------~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~  557 (635)
                              .-..-|+.|..  |+++|.... .+|.|+.||+......+....-..-        ..+......+...-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                    00233565544  788876665 6899999999875433222110000        0011111222345667


Q ss_pred             ccCCCeEEEEe
Q psy18018        558 LQFNSRFVITS  568 (635)
Q Consensus       558 ~s~~~~~l~~~  568 (635)
                      +|.||+.|...
T Consensus       381 lS~DGkRlYvT  391 (461)
T PF05694_consen  381 LSLDGKRLYVT  391 (461)
T ss_dssp             E-TTSSEEEEE
T ss_pred             EccCCeEEEEE
Confidence            78888877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=85.28  E-value=43  Score=33.49  Aligned_cols=134  Identities=16%  Similarity=0.139  Sum_probs=69.6

Q ss_pred             cEEEEeCCCCceeeeecc-CCccEEEEEec-CCEEEEEeCCCcEEEEECCC-CceeEEecCCCcccccEEEEEec-CCEE
Q psy18018        437 SIRVWEAESGNLRHTLMG-HQSLTSGMELR-NNILVSGNADSTVKVWDIVS-GQCLQTLSGRNKHQSAVTCLQFN-SRFV  512 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~l  512 (635)
                      .+.+-+-.++..+..... ....|+...++ ...+-.++..+-+..|+.++ +-...+..+  ...++|.++--+ .+-|
T Consensus       355 ~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~ag--l~ss~V~aived~dnsL  432 (671)
T COG3292         355 ELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAG--LPSSEVSAIVEDPDNSL  432 (671)
T ss_pred             eEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccC--CcccceeeeeecCCCCE
Confidence            344444445554443222 22234433333 33555565554466666655 333333322  244567666663 3338


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        513 ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ..|+.+|.++. +.+.++....+....+..+      .+.+..+.+.|+|++-+..+ +| |..|+-+.
T Consensus       433 WIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~------~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~  492 (671)
T COG3292         433 WIGTSGGLVKR-DPESGRVLNLLNPGSHGLD------GSRVEQLGLGPDGRLWLAAG-SG-VAAWESQR  492 (671)
T ss_pred             EEeccCCeEec-CccccchhcccccccCcCC------cchhhhhccCCCCceEEEec-ce-eeeecccc
Confidence            88988886554 4454444433333222221      33478889999999765443 33 67787554

>KOG2247|consensus

Probab=85.12  E-value=0.17  Score=47.95  Aligned_cols=133  Identities=16%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccceec
Q psy18018        465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      .+.-++.++.+..+..||-. ++...+..    .......++||   +..++.+-..+.+.+||+.+..... +...   
T Consensus        45 e~~nlavaca~tiv~~YD~a-gq~~le~n----~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~g---  115 (615)
T KOG2247|consen   45 EGHNLAVACANTIVIYYDKA-GQVILELN----PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESG---  115 (615)
T ss_pred             CCCceehhhhhhHHHhhhhh-cceecccC----CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhcc---
Confidence            34458888888888899854 44444433    33444556775   3455666778899999998653211 1110   


Q ss_pred             CceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                           ..+.  -.-+.|++-...++.+...|.+.|++-.+.+.+..+     +.|..+++++++.+.+..+. ++.|.
T Consensus       116 -----g~~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-----Gkh~RRgtq~av~lEd~vil-~dcd~  180 (615)
T KOG2247|consen  116 -----GTSS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-----GKHQRRGTQIAVTLEDYVIL-CDCDN  180 (615)
T ss_pred             -----Ccch--HHHHhhccCCccccccccccceEEEeccchhhhhhh-----cccccceeEEEecccceeee-cCcHH
Confidence                 0011  122678999999999999999999998887776666     45888999999999877654 44443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.50  E-value=39  Score=32.37  Aligned_cols=193  Identities=13%  Similarity=0.155  Sum_probs=96.8

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEE------EEecCC---EEEEEeCC---CcEEEEECCC-CceeE
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG------MELRNN---ILVSGNAD---STVKVWDIVS-GQCLQ  490 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~------~~~~~~---~l~s~~~d---g~i~iwd~~~-~~~~~  490 (635)
                      |...+++....++-+.+||+. |+.++.+..  +..+.      +.+.++   ++++...+   .+|++|.+.. ...+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            445566777777788888886 555555542  22332      333444   23333332   4699997752 12333


Q ss_pred             EecCCC----cccccEEEEEe-----cCC-EEEEEeCCCcEEEEECCC---CceeeeeccceecCceeEEeccCceeccc
Q psy18018        491 TLSGRN----KHQSAVTCLQF-----NSR-FVITSSDDGTVKLWDVKT---GEFSTPLMSSFILNPFYFLIYSQPLLCPH  557 (635)
Q Consensus       491 ~~~~~~----~~~~~v~~~~~-----~~~-~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  557 (635)
                      .+....    .....+..+|+     ++. +.+....+|.+..|.+..   +.....+        ++.+.-...+..+.
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l--------VR~f~~~sQ~EGCV  214 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL--------VREFKVGSQPEGCV  214 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE--------EEEEE-SS-EEEEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE--------EEEecCCCcceEEE
Confidence            332210    01123556665     243 667778899988888752   2222222        22222345677788


Q ss_pred             ccCCCeEEEEecCCCeEEEEeCCC--CceEEeeeeccCCCCCceEEEEEeC--CCCe-EEEEcc-CCCeeEeEEEEEeee
Q psy18018        558 LQFNSRFVITSSDDGTVKLWDVKT--GEFIRNLVSLDSGGSGGVVWRIRAS--ETKL-VCAVGS-RNGTEETKLLVLDFD  631 (635)
Q Consensus       558 ~s~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~i~~l~~s--~d~~-~l~~~~-~dg~~~~~l~~~d~~  631 (635)
                      ......+|..+-++--|.-|+.+.  +.....+......+...-|-.|+.-  ++++ ||++.+ .+++    .-+||-+
T Consensus       215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s----f~Vy~r~  290 (381)
T PF02333_consen  215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS----FAVYDRE  290 (381)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE----EEEEESS
T ss_pred             EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe----EEEEecC
Confidence            887888899999887777777652  2221222122223455667777763  3443 444443 3333    5555544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1900|consensus

Probab=84.49  E-value=10  Score=41.61  Aligned_cols=149  Identities=18%  Similarity=0.328  Sum_probs=87.5

Q ss_pred             eCCCcEEEEECCCCceeEEecCCCcccccEEEEEe---c-C------CEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018        473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---N-S------RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~-~------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                      +-|+.+.+|+..++.....+.+   ....|..+..   . |      +++.....--.|.++-+.-.+.......  ...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~---~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~--f~~  170 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDG---LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI--FNT  170 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccc---hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc--ccc
Confidence            3578899999999877777776   4455555544   1 1      2333333345566665543322111110  000


Q ss_pred             ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC----CCC---c--------------eEEeeeeccCCCCCceEE
Q psy18018        543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV----KTG---E--------------FIRNLVSLDSGGSGGVVW  601 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~----~~~---~--------------~~~~~~~~~~~~~~~~i~  601 (635)
                      ..........|+++....+|+.+.+|- ||  .+|.+    .+|   +              .+.++..++ +.+.++|.
T Consensus       171 ~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~  246 (1311)
T KOG1900|consen  171 SFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIR  246 (1311)
T ss_pred             ceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcce
Confidence            011111245788888888999888665 45  44443    211   1              112222221 35678999


Q ss_pred             EEEeCCCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018        602 RIRASETKLVCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       602 ~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                      .++.......|.+-++-|+    +-.||+++|+
T Consensus       247 qi~ID~SR~IlY~lsek~~----v~~Y~i~~~G  275 (1311)
T KOG1900|consen  247 QITIDNSRNILYVLSEKGT----VSAYDIGGNG  275 (1311)
T ss_pred             eeEeccccceeeeeccCce----EEEEEccCCC
Confidence            9999999999999999998    6667777765

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.20  E-value=48  Score=33.17  Aligned_cols=251  Identities=15%  Similarity=0.092  Sum_probs=124.0

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                      .+...| .+.+|+.+| +..||..+++..+.-.... ..|..+..+ ...|..|+.+| +.+.+...-+ ........|+
T Consensus       171 v~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~-~sn~~~~lp~  246 (671)
T COG3292         171 VFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWR-ASNWGPMLPS  246 (671)
T ss_pred             eeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcc-ccccCCCCcc
Confidence            344444 577788887 6778888887766554444 566666666 56777777766 4555444311 1111111222


Q ss_pred             C----------cEEEEEeCCCcEEEEeCCCCceeeee-ccC--CccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        426 G----------VHVVSGSLDTSIRVWEAESGNLRHTL-MGH--QSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       426 ~----------~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~--~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                      +          ..+-.|+.+|..+ +..+...+.... +-|  .+.|.++..+. .-+-+++.++.+++-+ .+....+.
T Consensus       247 ~~I~ll~qD~qG~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~-a~w~~ma~  324 (671)
T COG3292         247 GNILLLVQDAQGELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT-ADWKRMAV  324 (671)
T ss_pred             hheeeeecccCCCEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec-chhhheee
Confidence            2          2344444444332 222222222221 112  23455555543 3556666666555433 22222222


Q ss_pred             ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      +....+........++  .+..+--...-|.+.+-+-.++........          .-...|+.+++..++++-+ |+
T Consensus       325 in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q----------~Rg~nit~~~~d~~g~lWl-gs  393 (671)
T COG3292         325 INDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQ----------LRGMNITTTLEDSRGRLWL-GS  393 (671)
T ss_pred             eecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeee----------ccccccchhhhccCCcEEE-Ee
Confidence            3221111111111111  122222222233444444455554443221          1234577777777666544 55


Q ss_pred             CCCeEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        570 DDGTVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       570 ~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ..+-+.-|+.++ +-.+....    ....++|.++.-.||+. |-.|+.+|.
T Consensus       394 ~q~GLsrl~n~n~~avlde~a----gl~ss~V~aived~dns-LWIGTs~Gl  440 (671)
T COG3292         394 MQNGLSRLDNKNEWAVLDEDA----GLPSSEVSAIVEDPDNS-LWIGTSGGL  440 (671)
T ss_pred             cccchhhhccCCccccccccc----CCcccceeeeeecCCCC-EEEeccCCe
Confidence            553466677666 33333332    34567899999999999 778999985

>KOG1983|consensus

Probab=84.06  E-value=67  Score=35.83  Aligned_cols=31  Identities=13%  Similarity=0.277  Sum_probs=26.8

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEcc
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAE  371 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~  371 (635)
                      .+....++|+|....++.++..|.|.+|-..
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEeccc
Confidence            3566778999999999999999999998754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.25  E-value=4.7  Score=41.62  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             cCCEEEEEeCCCcEEEEECCC----Cceeeeecccee-----cCcee------EEeccCceecccccC----CCeEEEEe
Q psy18018        508 NSRFVITSSDDGTVKLWDVKT----GEFSTPLMSSFI-----LNPFY------FLIYSQPLLCPHLQF----NSRFVITS  568 (635)
Q Consensus       508 ~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~-----~~~~~------~~~~~~~v~~~~~s~----~~~~l~~~  568 (635)
                      ++..++.+..||.+.......    +...........     .....      ...-......+++++    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            677888888888888777664    221111111000     00000      000112344455555    77899999


Q ss_pred             cCCCeEEEEeCCCCceEEee
Q psy18018        569 SDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       569 ~~d~~v~iwd~~~~~~~~~~  588 (635)
                      +.|+++|+||+.+++++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999997765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG0379|consensus

Probab=83.11  E-value=55  Score=33.06  Aligned_cols=164  Identities=13%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             EEEEEecCCEEEEEeCCC------cEEEEECCCCceeEEecCCC--cccccEEEEEecCCEEEEEeC------CCcEEEE
Q psy18018        459 TSGMELRNNILVSGNADS------TVKVWDIVSGQCLQTLSGRN--KHQSAVTCLQFNSRFVITSSD------DGTVKLW  524 (635)
Q Consensus       459 v~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~------d~~i~vw  524 (635)
                      ....++...+++.|+.+.      .+..+|+.+.+.........  .....-+++..+.++++.|+.      ...+.++
T Consensus       116 ~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~  195 (482)
T KOG0379|consen  116 HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIY  195 (482)
T ss_pred             eeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeee
Confidence            334455677888888885      78889988776443322211  111222333335555666653      3468899


Q ss_pred             ECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC------CeEEEEeCCCCceEEeeeeccCCCCCc
Q psy18018        525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD------GTVKLWDVKTGEFIRNLVSLDSGGSGG  598 (635)
Q Consensus       525 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~  598 (635)
                      |+.+.+............|  ...|.      +..-..++++.++.+      +-+.+.|+.+.+..... .....+...
T Consensus       196 d~~~~~W~~~~~~g~~P~p--R~gH~------~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R  266 (482)
T KOG0379|consen  196 DLETSTWSELDTQGEAPSP--RYGHA------MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPR  266 (482)
T ss_pred             ccccccceecccCCCCCCC--CCCce------EEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCc
Confidence            9988774443333221111  11111      111256777777766      35778888886655222 111112223


Q ss_pred             eEEEEEeCCCCeEEEEccCCCe--eEeEEEEEeee
Q psy18018        599 VVWRIRASETKLVCAVGSRNGT--EETKLLVLDFD  631 (635)
Q Consensus       599 ~i~~l~~s~d~~~l~~~~~dg~--~~~~l~~~d~~  631 (635)
                      .-..+.++.+.-+|.-|+.++.  ..-.+|.+|.+
T Consensus       267 ~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~  301 (482)
T KOG0379|consen  267 SGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE  301 (482)
T ss_pred             ceeeeEEECCEEEEEcCCccccccccccccccccc
Confidence            3444556666666666666641  23556666654

>KOG3630|consensus

Probab=82.33  E-value=7.8  Score=41.69  Aligned_cols=100  Identities=13%  Similarity=-0.120  Sum_probs=58.1

Q ss_pred             eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe-EEEEecCCCeEEEEeCCCCceEEeeeeccCC
Q psy18018        516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSSDDGTVKLWDVKTGEFIRNLVSLDSG  594 (635)
Q Consensus       516 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  594 (635)
                      +.+-.|..||+++.......................-..++.|.|.-. ..+....|+.|++..+.--....+-     .
T Consensus       121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-----~  195 (1405)
T KOG3630|consen  121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-----F  195 (1405)
T ss_pred             cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-----c
Confidence            344478899988654322111000000001111122345667777543 3445667888888876532221111     2


Q ss_pred             CCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        595 GSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       595 ~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ......++++|+|.|+.|++|..+|+
T Consensus       196 p~t~~~Tav~WSprGKQl~iG~nnGt  221 (1405)
T KOG3630|consen  196 PVTNSQTAVLWSPRGKQLFIGRNNGT  221 (1405)
T ss_pred             CcccceeeEEeccccceeeEecCCCe
Confidence            45678999999999999999999998

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.21  E-value=55  Score=35.50  Aligned_cols=178  Identities=15%  Similarity=0.135  Sum_probs=0.0

Q ss_pred             eeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEec-CCCcccccEEEEEec------CCE--EEEEeC
Q psy18018        448 LRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLS-GRNKHQSAVTCLQFN------SRF--VITSSD  517 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~------~~~--l~~~~~  517 (635)
                      .+....|..+.+..++. +...+..+..++....-+.........+. .   ...+|..|+|.      +..  ++..=.
T Consensus        29 i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~---~~~PI~qI~fa~~~~~~~~~~~~l~Vrt  105 (765)
T PF10214_consen   29 ILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSID---DGSPIKQIKFATLSESFDEKSRWLAVRT  105 (765)
T ss_pred             EEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcC---CCCCeeEEEecccccccCCcCcEEEEEc


Q ss_pred             CCcEEEEECCCCce---eeeeccceecCceeEEeccC----ceecccccC-CCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        518 DGTVKLWDVKTGEF---STPLMSSFILNPFYFLIYSQ----PLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       518 d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ...+.|+...-.+.   ...........++..+.+..    +...++|+| +.+.||+.+..|...|||+..+.....-.
T Consensus       106 ~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~  185 (765)
T PF10214_consen  106 ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN  185 (765)
T ss_pred             CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc


Q ss_pred             eccCCCCCceE------E----EEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        590 SLDSGGSGGVV------W----RIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       590 ~~~~~~~~~~i------~----~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      -.......+.|      .    .+.|.++-..|++++...     +..+|++.+
T Consensus       186 ~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-----l~~~d~~~~  234 (765)
T PF10214_consen  186 LRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-----LMLIDFESN  234 (765)
T ss_pred             eeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-----eEEEECCCC

These proteins are found in fungi.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=81.99  E-value=41  Score=30.76  Aligned_cols=200  Identities=15%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEcc-------CCceEEeeeCCCc-----ceeEEEEeCC--------------EEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAE-------SGNLRHTLMGHQS-----LTSGMELRNN--------------ILV  397 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~-------~~~~~~~~~~~~~-----~v~~l~~~~~--------------~l~  397 (635)
                      .+-++++|.+.+-++....+...+||..       ...++-.+.....     ..+.+.|++.              .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE


Q ss_pred             EEeCCCcEEEEEccCCcc---eeEEEEEee----------------CCcEEEEEeCCCcEEEEeCCCCceeee-------
Q psy18018        398 SGNADSTVKVWDIVSGTK---KLMFRICLF----------------DGVHVVSGSLDTSIRVWEAESGNLRHT-------  451 (635)
Q Consensus       398 s~~~dg~i~iwd~~~~~~---~~~~~~~~~----------------~~~~l~~~~~d~~i~~~d~~~~~~~~~-------  451 (635)
                      .+++||+|.-|...-...   .....+-..                ...+.++-...++|.+||-.-.+....       
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC


Q ss_pred             eccCCccEEEEEecCCEEEE-------------EeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--------cCC
Q psy18018        452 LMGHQSLTSGMELRNNILVS-------------GNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--------NSR  510 (635)
Q Consensus       452 ~~~~~~~v~~~~~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~  510 (635)
                      +.....+-.-..+.++++++             +-.-|.|-+||+. ++.++.+. ....-..-+.|+.        .+.
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~a-s~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVA-SSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEec-cCCcccCCceeeeChhhhCCCCCC


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        511 FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       511 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                      +|+--..||+|..||..+++.+..+...                      +++-|+.
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~----------------------~G~pi~i  297 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDP----------------------DNHPVKV  297 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCC----------------------CCCeEEe

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>smart00564 PQQ beta-propeller repeat

Probab=81.92  E-value=3.9  Score=22.50  Aligned_cols=25  Identities=40%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             EEEEecCCCeEEEEeCCCCceEEee
Q psy18018        564 FVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      .+++++.+|.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5667888999999999999988764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=81.42  E-value=4.8  Score=23.59  Aligned_cols=25  Identities=12%  Similarity=0.203  Sum_probs=17.6

Q ss_pred             EEEecCCEEEEEeCCCcEEEEECCC
Q psy18018        461 GMELRNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       461 ~~~~~~~~l~s~~~dg~i~iwd~~~  485 (635)
                      ++...+..++.++.||.++.+|.++
T Consensus        16 ~~~v~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   16 SPAVAGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             --EECTSEEEEE-TTSEEEEEETT-
T ss_pred             CCEEECCEEEEEcCCCEEEEEeCCC
Confidence            3466778888999999999988753

>PRK10115 protease 2; Provisional

Probab=81.13  E-value=82  Score=33.65  Aligned_cols=188  Identities=15%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             EeeCCcEEEEEeCC-----CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEE-eCC-----CcEEEEECCCC--
Q psy18018        422 CLFDGVHVVSGSLD-----TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSG-NAD-----STVKVWDIVSG--  486 (635)
Q Consensus       422 ~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~-~~d-----g~i~iwd~~~~--  486 (635)
                      ++||+++|+.+...     ..+++.|+.+++.+........  ..+.|  +++.|+.. ..+     ..|+.+++.++  
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~  211 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS  211 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence            57888888776432     3688999988864332222222  23555  55544443 322     35788888877  


Q ss_pred             ceeEEecCCCcccccEEEEEe-cCCEEEEEeC---CCcEEEEECC--CCceeeeeccceecCceeEEeccCceecccccC
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF-NSRFVITSSD---DGTVKLWDVK--TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~---d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                      +....+.... ....+..... ++++++..+.   ++.+.+++..  +++........  ........          +.
T Consensus       212 ~d~lv~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~  278 (686)
T PRK10115        212 QDELVYEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR--KDHEYSLD----------HY  278 (686)
T ss_pred             HCeEEEeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC--CCCEEEEE----------eC
Confidence            3333333211 1112222222 6776655443   3568888853  33311111111  01111111          11


Q ss_pred             CCeEEEEecC---CCeEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        561 NSRFVITSSD---DGTVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       561 ~~~~l~~~~~---d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      .+.+.+....   ...|...++.+ ++. ..+   .+......+..+.++ .+.++++...+|.  .+++.+|.+
T Consensus       279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l---~~~~~~~~i~~~~~~-~~~l~~~~~~~g~--~~l~~~~~~  346 (686)
T PRK10115        279 QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EEL---IPPRENIMLEGFTLF-TDWLVVEERQRGL--TSLRQINRK  346 (686)
T ss_pred             CCEEEEEEcCCCCCceEEEecCCCcccC-eEE---ECCCCCCEEEEEEEE-CCEEEEEEEeCCE--EEEEEEcCC
Confidence            2333333322   22344444442 221 122   112234478888887 4466677777777  556666653

>KOG3616|consensus

Probab=80.23  E-value=53  Score=33.94  Aligned_cols=284  Identities=11%  Similarity=0.073  Sum_probs=0.0

Q ss_pred             ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccC-----
Q psy18018        338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS-----  412 (635)
Q Consensus       338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~-----  412 (635)
                      .........+.-+|.++.++.+..||.|++|+.. .+....+-....+-..+.|...-|+++..|..+.-|.-+.     
T Consensus        11 ~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~-~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqq   89 (1636)
T KOG3616|consen   11 PKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI-PRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQ   89 (1636)
T ss_pred             ccccceeeeeeecCCCceEEEEecCCcEEEEeec-ccchhhhhhhcCCccceeeeccceEEEeccchhheeeccCcchhh


Q ss_pred             ------CcceeEEEEEee-------------------------CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEE
Q psy18018        413 ------GTKKLMFRICLF-------------------------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  461 (635)
Q Consensus       413 ------~~~~~~~~~~~~-------------------------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  461 (635)
                            .+.......|.|                         ..++-.+--....+.+-|+.++.....+....-.|..
T Consensus        90 fdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aide  169 (1636)
T KOG3616|consen   90 FDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDE  169 (1636)
T ss_pred             ccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhh


Q ss_pred             EEecCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeecccee
Q psy18018        462 MELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI  540 (635)
Q Consensus       462 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  540 (635)
                      +..-|+ ..+.+....+|.+=|+.+.+....--.   ..+.-...-|+-.-...--..|.+.+-.......+...+..+.
T Consensus       170 lkilgkdryli~~ts~siii~d~es~rfsei~wq---gsgg~ekfffd~~n~cli~nageltlveyg~d~slg~vrte~~  246 (1636)
T KOG3616|consen  170 LKILGKDRYLIAHTSESIIIADLESNRFSEIAWQ---GSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGSVRTEFM  246 (1636)
T ss_pred             hhhccccceEEeeccccEEEeecccchhhhhhcc---cCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchhhhhhhc


Q ss_pred             cCceeEEeccCceecccc----cCCCeEEEEecCCCe-----------------------------------EEE-EeCC
Q psy18018        541 LNPFYFLIYSQPLLCPHL----QFNSRFVITSSDDGT-----------------------------------VKL-WDVK  580 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~----s~~~~~l~~~~~d~~-----------------------------------v~i-wd~~  580 (635)
                      ........-......--=    +.|...++--..=++                                   |.| -|+-
T Consensus       247 nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndlqlphi~ipvdli  326 (1636)
T KOG3616|consen  247 NPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDLQLPHIAIPVDLI  326 (1636)
T ss_pred             CceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccccCcceeeeeecc


Q ss_pred             CCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecCCC
Q psy18018        581 TGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVDSK  635 (635)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~~  635 (635)
                      .|.....+      .|.+.|-=+.+...+..|..-..--.    +..+|+++.+|
T Consensus       327 ~g~~~~~i------nh~~~vdwielne~~~kllfrdkk~k----l~l~di~s~qk  371 (1636)
T KOG3616|consen  327 GGQNEGFI------NHEGAVDWIELNERAHKLLFRDKKLK----LHLVDIESCQK  371 (1636)
T ss_pred             cCcccccc------cccccccceeccchhhhhhcccccce----eEEEEcccchH

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=80.13  E-value=7.5  Score=23.24  Aligned_cols=27  Identities=15%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             EEEEEEc---C--CEEEEeeCCCcEEEEECCC
Q psy18018         84 ITCLQFS---G--SRIVSGSDDNTLKVWSATT  110 (635)
Q Consensus        84 i~~~~~s---~--~~l~s~~~d~~v~vWd~~~  110 (635)
                      ++++.||   +  .+||-.-.-+.|.|+|+.+
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3899999   3  5777777778888888764

It contains a characteristic DLL sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	635
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		9e-91
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-32
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-31
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-23
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-23
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-23
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-22
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-22
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-22
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-22
2h9l_A	329	Wdr5delta23 Length = 329		1e-22
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-22
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-22
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-22
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-22
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-22
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-22
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-22
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-21
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-21
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-10
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-21
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-21
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-13
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-11
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-08
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-08
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-12
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-12
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-12
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-12
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-12
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-12
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		6e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		7e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		5e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  331 bits (848), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 212/498 (42%), Positives = 255/498 (51%), Gaps = 182/498 (36%)
Query: 267 TQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR 326
           TQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P+DLL+AAQTCR WR LAEDNLLWR
Sbjct: 1   TQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60
Query: 327 EKCLEAAT---LHRNKKTHVPDLF------------------------------------ 347
           EKC E      LH  ++  +   F                                    
Sbjct: 61  EKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDH 120
Query: 348 ---GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADST 404
                QF G  +VSGS D +++VW A +G    TL+GH       ++R+NI++SG+ D T
Sbjct: 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT 180
Query: 405 VKVWD--------------------------IVSGTKKLMFRI-------CL-------- 423
           +KVW+                          +VSG++    R+       CL        
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 424 ------FDGVHVVSGS----------------------------------------LDTS 437
                 +DG  VVSG+                                        LDTS
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 438 IRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497
           IRVW+ E+GN  HTL GHQSLTSGMEL++NILVSGNADSTVK+WDI +GQCLQTL G NK
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 498 HQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557
           HQSAVTCLQFN  FVITSSDDGTVKLWD+KTGEF   L++                    
Sbjct: 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT-------------------- 400
Query: 558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNXXXXXXXXXXXXXWRIRASETKLVCAVGSR 617
                   + S   G V +W +                        RAS TKLVCAVGSR
Sbjct: 401 --------LESGGSGGV-VWRI------------------------RASNTKLVCAVGSR 427
Query: 618 NGTEETKLLVLDFDVDSK 635
           NGTEETKLLVLDFDVD K
Sbjct: 428 NGTEETKLLVLDFDVDMK 445

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 149/561 (26%), Positives = 249/561 (44%), Gaps = 108/561 (19%)
Query: 70  IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL------------- 114
           +K+   L+ H   V   + FS  G  I S SDD T+K+W+   G+ L             
Sbjct: 6   VKERNRLEAHSSSV-RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 63
Query: 115 --------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
                   + S S D T+++W+  +G+ L  L GH ++VR V +  DG+ + S + D  V
Sbjct: 64  AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALR---SRIVSGSDDNTLKVWSATTGKCLRTLIG 221
           K+WN + +         + V    G A       I S SDD T+K+W+   G+ L+TL G
Sbjct: 123 KLWNRNGQLLQTLTGHSSSV---WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 178
Query: 222 HTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ 279
           H+  VW    +  G  I S S D+T+K W+        GQL+ +                
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQT---------------- 216
Query: 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNK 339
                  L     ++  + F      + +A   ++ +    +  L     L+  T H + 
Sbjct: 217 -------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSS 264
Query: 340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV 397
              V     F+ DG  + S S D ++++W   +G L  TL GH S   G+        + 
Sbjct: 265 VNGVA----FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 398 SGNADSTVKVWD-------IVSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLR 449
           S + D TVK+W+        ++G    ++ +    DG  + S S D ++++W   +G L 
Sbjct: 320 SASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 378
Query: 450 HTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507
            TL GH S   G+        + S + D TVK+W+  +GQ LQTL+G   H S+V  + F
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG---HSSSVWGVAF 434
Query: 508 --NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
             + + + ++SDD TVKLW+ + G+    L             +S  +       + + +
Sbjct: 435 SPDDQTIASASDDKTVKLWN-RNGQLLQTLTG-----------HSSSVRGVAFSPDGQTI 482
Query: 566 ITSSDDGTVKLWDVKTGEFIR 586
            ++SDD TVKLW+ + G+ ++
Sbjct: 483 ASASDDKTVKLWN-RNGQLLQ 502

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 160/338 (47%), Gaps = 44/338 (13%)
Query: 280 FQRDFISLLPRE----LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR---EKCLEA 332
            QRDFI+ LP      +A  +L++L  + L  A   C+ W  +  D +LW+   E+ +  
Sbjct: 6   LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 65
Query: 333 ATLHRNK-----------KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-- 379
            +L R             K   PD           +   +   I   E+     RH+L  
Sbjct: 66  DSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQR 125
Query: 380 MGHQSLTSG----MELRNNILVSGNADSTVKVWDIVSGTKKLMFR------ICL-FDGVH 428
           +  +S TS     ++  +  +VSG  D+T+K+WD  +   K +        +CL +D   
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 185
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQC 488
           +++GS D+++RVW+  +G + +TL+ H      +   N ++V+ + D ++ VWD+ S   
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI 548
           +        H++AV  + F+ ++++++S D T+K+W+  T EF   L             
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG----------- 294
Query: 549 YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
           + + + C  LQ+  R V++ S D T++LWD++ G  +R
Sbjct: 295 HKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLR 330

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 53  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 112
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 172
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 233 TLDNTLKLWDYSKGKCLK-----------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 282 LVYIWNLQTKEIVQ 295

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 55  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 114
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 174
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 235 TLDNTLKLWDYSKGKCLK-----------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 284 LVYIWNLQTKEIVQ 297

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 97  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 217 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 266 LVYIWNLQTKEIVQ 279

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 91  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 211 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 260 LVYIWNLQTKEIVQ 273

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 27  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 86
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 87  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 146
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 207 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 256 LVYIWNLQTKEIVQ 269

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 32  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 91
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 92  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 151
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 152 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 212 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 261 LVYIWNLQTKEIVQ 274

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 97  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 217 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 266 LVYIWNLQTKEIVQ 279

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 30  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 89
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 90  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 149
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 210 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 259 LVYIWNLQTKEIVQ 272

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 91  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 211 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 260 LVYIWNLQTKEIVQ 273

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 48  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 107
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 167
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 228 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 277 LVYIWNLQTKEIVQ 290

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 36  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 95
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 96  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 155
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 216 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 265 LVYIWNLQTKEIVQ 278

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 97  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 217 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 266 LVYIWNLQTKEIVQ 279

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 263 LVYIWNLQTKEIVQ 276

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 263 MVYIWNLQTKEIVQ 276

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 263 LVYIWNLQTKEIVQ 276

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + + S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 34  FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D T+KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 263 LVYIWNLQTKEIVQ 276

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
           F  +G  + S S D  I++W A  G    T+ GH+   S +   +  N+LVS + D T+K
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
           +WD+ SG      +        C F+     +VSGS D S+R+W+ ++G    TL  H  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
             S +    +  ++VS + D   ++WD  SGQCL+TL   +    +      N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
           + D  +KLWD   G+               +  +     C    F+    +++++ S+D 
Sbjct: 214 TLDNDLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
            V +W+++T E ++
Sbjct: 263 MVYIWNLQTKEIVQ 276

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 49/243 (20%)
Query: 55  FMSHRSVEINWRT-RPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC 113
           F+ +  +  NW   + +     L+GH   VITCLQF  + +++G+DD  ++V+ +   K 
Sbjct: 95  FLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKF 154
Query: 114 LL--------------------VSGSRDATLRVWHIESGECLHVLVGHLAAVRC---VQY 150
           LL                    VSGS D T+RVW I+ G C HV  GH + VRC   V+Y
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 151 DG-KLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL----------------SHGYALR 193
              K +V+G+ D  + +W    E  +    +E +  L                 H  ++R
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 194 SR------IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS--QMAGNIIISGSTDRTL 245
           +       +VSGS DNTL VW     KCL  L GHT  ++S+         IS S D T+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 246 KGW 248
           + W
Sbjct: 335 RIW 337

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 163/388 (42%), Gaps = 98/388 (25%)
Query: 275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW-RFLAEDNLLWRE------ 327
           LI+   +RD I+ LP E++L +  +LQ ED++ +    ++W + + +   LW++      
Sbjct: 5   LIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64
Query: 328 ----KCLEAATLHRNKK------------THVPDLF------------------------ 347
               K   +  L  ++K            + + ++F                        
Sbjct: 65  FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSV 124
Query: 348 --GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADST 404
               QF+  +V++G+ D  IRV+++ +      L GH      ++     ILVSG+ D T
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 405 VKVWDIVSGTKKLMFR----------ICLFDGV-HVVSGSLDTSIRVWE----------- 442
           V+VWDI  G    +F           I  +  + ++V+GS D ++ VW+           
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 443 ------------AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ 490
                        E+      L GH +    +    NI+VSG+ D+T+ VWD+   +CL 
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
            LSG      + T      +  I++S D T+++WD++ GE    L               
Sbjct: 305 ILSGHTDRIYS-TIYDHERKRCISASXDTTIRIWDLENGELXYTLQ-------------G 350
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWD 578
              L   L+ + +F+++++ DG+++ WD
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSIRGWD 378

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 422 CL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVK 479
           CL F+  +V++G+ D  IRV+++ +      L GH      ++     ILVSG+ D TV+
Sbjct: 127 CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 186
Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPL 535
           VWDI  G C     G   H S V CL      N ++++T S D T+ +W +   E S P 
Sbjct: 187 VWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK-ESSVPD 242
Query: 536 MSSFILNPFYFLIYSQPLLCPH--------------LQFNSRFVITSSDDGTVKLWDV 579
                    Y L++  P   P+              +  +   V++ S D T+ +WDV
Sbjct: 243 HGE---EHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV 297

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 49/243 (20%)
Query: 55  FMSHRSVEINWRT-RPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC 113
           F+ +  +  NW   + +     L+GH   VITCLQF  + +++G+DD  ++V+ +   K 
Sbjct: 95  FLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF 154
Query: 114 LL--------------------VSGSRDATLRVWHIESGECLHVLVGHLAAVRC---VQY 150
           LL                    VSGS D T+RVW I+ G C HV  GH + VRC   V+Y
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 151 DG-KLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL----------------SHGYALR 193
              K +V+G+ D  + +W    E  +    +E +  L                 H  ++R
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274
Query: 194 SR------IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS--QMAGNIIISGSTDRTL 245
           +       +VSGS DNTL VW     KCL  L GHT  ++S+         IS S D T+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 246 KGW 248
           + W
Sbjct: 335 RIW 337

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 166/388 (42%), Gaps = 98/388 (25%)
Query: 275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW-RFLAEDNLLWRE------ 327
           LI+   +RD I+ LP E++L +  +LQ ED++ +    ++W + + +   LW++      
Sbjct: 5   LIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64
Query: 328 ----KCLEAATLHRNKK------------THVPDLF------------------------ 347
               K   +  L  ++K            + + ++F                        
Sbjct: 65  FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSV 124
Query: 348 --GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADST 404
               QF+  +V++G+ D  IRV+++ +      L GH      ++     ILVSG+ D T
Sbjct: 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 405 VKVWDIVSGTKKLMFR----------ICLFDGV-HVVSGSLDTSIRVWE----------- 442
           V+VWDI  G    +F           I  +  + ++V+GS D ++ VW+           
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 443 ------------AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ 490
                        E+      L GH +    +    NI+VSG+ D+T+ VWD+   +CL 
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
            LSG      + T      +  I++S D T+++WD++ GE    LM         + +  
Sbjct: 305 ILSGHTDRIYS-TIYDHERKRCISASMDTTIRIWDLENGE----LM---------YTLQG 350
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWD 578
              L   L+ + +F+++++ DG+++ WD
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 422 CL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVK 479
           CL F+  +V++G+ D  IRV+++ +      L GH      ++     ILVSG+ D TV+
Sbjct: 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 186
Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPL 535
           VWDI  G C     G   H S V CL      N ++++T S D T+ +W +   E S P 
Sbjct: 187 VWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK-ESSVPD 242
Query: 536 MSSFILNPFYFLIYSQPLLCPH--------------LQFNSRFVITSSDDGTVKLWDV 579
                    Y L++  P   P+              +  +   V++ S D T+ +WDV
Sbjct: 243 HGE---EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 78/347 (22%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWNPDT 171
           ++VS S DAT++VW  E+G+    L GH  +V+ + +D  GKL+ S + D  +K+W+   
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 172 EECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW--S 228
            EC+      +  V           IVS S D T+K+W   TG C++T  GH   V    
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
               G +I S S D+T++ W     ++A  +     E  + RH+++ I    +  + S  
Sbjct: 242 PNQDGTLIASCSNDQTVRVW-----VVATKEC--KAELREHRHVVECISWAPESSYSS-- 292
Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348
                                                    +  AT    KK+  P  F 
Sbjct: 293 -----------------------------------------ISEATGSETKKSGKPGPF- 310
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
                  ++SGS D +I++W+  +G    TL+GH +   G+   +    ++S   D T++
Sbjct: 311 -------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 407 VWDIVSGTKKLMFRICLFD-----------GVHVVSGSLDTSIRVWE 442
           VWD     K+ M  +   +             +VV+GS+D +++VWE
Sbjct: 364 VWDY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 49/260 (18%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDI--- 410
           +VS S D +I+VW+ E+G+   TL GH      +   ++  +L S +AD T+K+WD    
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 411 -----VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 464
                + G    +  + +  +G H+VS S D +I++WE ++G    T  GH+     +  
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 465 RNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR------------ 510
             +  ++ S + D TV+VW + + +C   L    +H+  V C+ +               
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGS 299
Query: 511 ----------FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF 560
                     F+++ S D T+K+WDV TG     LM+         + +   +       
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMT--------LVGHDNWVRGVLFHS 348
Query: 561 NSRFVITSSDDGTVKLWDVK 580
             +F+++ +DD T+++WD K
Sbjct: 349 GGKFILSCADDKTLRVWDYK 368

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSG 486
           +VS S D +I+VW+ E+G+   TL GH      +   ++  +L S +AD T+K+WD    
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
           +C++T+ G + + S+V+ +  N   ++++S D T+K+W+V+TG         + +  F  
Sbjct: 183 ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTG---------YCVKTFTG 232
Query: 547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
                 ++ P+   +   + + S+D TV++W V T E
Sbjct: 233 HREWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKE 267

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 130/595 (21%), Positives = 236/595 (39%), Gaps = 122/595 (20%)
Query: 75   VLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
            V++ H D V   C    G RI S   D TL+V+ A                     E+GE
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---------------------ETGE 648
Query: 134  CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
             L  +  H   V C  +  D   + + + D  VKIW+  T + +H   + +E      + 
Sbjct: 649  KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 192  LRSR---IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLK 246
             +S    + +GS+D  LK+W     +C  T+ GHT  V   + + +  ++ S S D TL+
Sbjct: 709  NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 247  GW----SNAERILAIGQLIDSCE--PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL 300
             W    +N  + + + +   S E  P  +  +++        D I +  +   L  L  +
Sbjct: 769  LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL--LFDI 826
Query: 301  QPEDLLRAAQT-----CRSWRFLAEDNLL---WREKCLEAATLHRNKKT-----HVPDLF 347
                LL    T      +   F   D+L      + C+E   +    K      H+  + 
Sbjct: 827  HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 348  GFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS------- 398
            G  F  DG   ++ S D +IRVWE +       ++  Q +    +    ++++       
Sbjct: 887  GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946
Query: 399  --------------------------------GNADSTVKVWDIVS--------GTKKLM 418
                                            G+ D  +K+ ++ +        G KK +
Sbjct: 947  QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 419  FRICL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADS 476
              I    DG  ++S S D+ I+VW  ++G+    L  HQ       L +++ L+S + D 
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDG 1065
Query: 477  TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS---RFVITSSDDGTVKLWDVKTGEFST 533
            TVKVW++++G+  +  +    HQ  V     +S   +F  TS+D  T K+W         
Sbjct: 1066 TVKVWNVITGRIERDFTC---HQGTVLSCAISSDATKFSSTSADK-TAKIW--------- 1112
Query: 534  PLMSSFILNPFYFLI-YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587
               S  +L+P + L  ++  + C     +   + T  D+G +++W+V  G+ + +
Sbjct: 1113 ---SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 130/595 (21%), Positives = 236/595 (39%), Gaps = 122/595 (20%)
Query: 75   VLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
            V++ H D V   C    G RI S   D TL+V+ A                     E+GE
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---------------------ETGE 655
Query: 134  CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
             L  +  H   V C  +  D   + + + D  VKIW+  T + +H   + +E      + 
Sbjct: 656  KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 192  LRSR---IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLK 246
             +S    + +GS+D  LK+W     +C  T+ GHT  V   + + +  ++ S S D TL+
Sbjct: 716  NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 247  GW----SNAERILAIGQLIDSCE--PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL 300
             W    +N  + + + +   S E  P  +  +++        D I +  +   L  L  +
Sbjct: 776  LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL--LFDI 833
Query: 301  QPEDLLRAAQT-----CRSWRFLAEDNLL---WREKCLEAATLHRNKKT-----HVPDLF 347
                LL    T      +   F   D+L      + C+E   +    K      H+  + 
Sbjct: 834  HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 348  GFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS------- 398
            G  F  DG   ++ S D +IRVWE +       ++  Q +    +    ++++       
Sbjct: 894  GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 953
Query: 399  --------------------------------GNADSTVKVWDIVS--------GTKKLM 418
                                            G+ D  +K+ ++ +        G KK +
Sbjct: 954  QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 419  FRICL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADS 476
              I    DG  ++S S D+ I+VW  ++G+    L  HQ       L +++ L+S + D 
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDG 1072
Query: 477  TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS---RFVITSSDDGTVKLWDVKTGEFST 533
            TVKVW++++G+  +  +    HQ  V     +S   +F  TS+D  T K+W         
Sbjct: 1073 TVKVWNVITGRIERDFTC---HQGTVLSCAISSDATKFSSTSADK-TAKIW--------- 1119
Query: 534  PLMSSFILNPFYFLI-YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587
               S  +L+P + L  ++  + C     +   + T  D+G +++W+V  G+ + +
Sbjct: 1120 ---SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 36/220 (16%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVK 406
           F  DG  + +G+ D  IR+W+ E+  +   L GH+     ++     + LVSG+ D TV+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 407 VWDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTL----- 452
           +WD+ +G   L   I            DG ++ +GSLD ++RVW++E+G L   L     
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 453 --MGHQ-SLTSGMELRN-NILVSGNADSTVKVWDIV------------SGQCLQTLSGRN 496
              GH+ S+ S +  R+   +VSG+ D +VK+W++             SG C  T  G  
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310
Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLM 536
               +V   Q N  ++++ S D  V  WD K+G    PL+
Sbjct: 311 DFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSG---NPLL 346

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 412 SGTKKLMFRICLF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN 467
           S +  L  R   F  DG  + +G+ D  IR+W+ E+  +   L GH+     ++     +
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 468 ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK 527
            LVSG+ D TV++WD+ +GQC  TLS  +   + V     + +++   S D  V++WD +
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 528 TGEFSTPLMS-----SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
           TG     L S     +   +  Y +++++         + + V++ S D +VKLW+++  
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTR---------DGQSVVSGSLDRSVKLWNLQNA 288

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
Query: 425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 482
           +G   VS S D S+R+W  ++G  ++  +GH    L+      N  +VSG  D+ ++VW+
Sbjct: 78  NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
Query: 483 IVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS 538
            V G+C+ TLS R  H   V+C++F    ++  +++   D  VK+WD+ TG   T L   
Sbjct: 138 -VKGECMHTLS-RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKG- 194
Query: 539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
                     ++  +    +  +     +S  DG  +LWD+  GE +
Sbjct: 195 ----------HTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94  IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
           I+ GSDD  ++V++  TG                     K  ++SGS D T+++W+ E+ 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
             L     GH   V CV ++ K      SG  D  VK+W+    T        QE  V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
              Y L  +  +++ SDD T+K+W   T  C+ TL GH   V  +       IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
            TLK W+++    E+ L +G     C  T        I   F   F  L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR--------ICLFD-GVHVVSGSLDTSIRVWE 442
           R N ++ G+ D  ++V++  +G K + F         I +     +V+SGS D ++++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
            E+   L  T  GH+     +       +   SG  D TVKVW +  GQ     +     
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
           +  V  + +    +  ++IT+SDD T+K+WD +T      L        F     + P+ 
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI- 242
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKT 581
                     +I+ S+DGT+K+W+  T
Sbjct: 243 ----------IISGSEDGTLKIWNSST 259

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94  IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
           I+ GSDD  ++V++  TG                     K  ++SGS D T+++W+ E+ 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
             L     GH   V CV ++ K      SG  D  VK+W+    T        QE  V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
              Y L  +  +++ SDD T+K+W   T  C+ TL GH   V  +       IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
            TLK W+++    E+ L +G     C  T        I   F   F  L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR--------ICLFD-GVHVVSGSLDTSIRVWE 442
           R N ++ G+ D  ++V++  +G K + F         I +     +V+SGS D ++++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
            E+   L  T  GH+     +       +   SG  D TVKVW +  GQ     +     
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
           +  V  + +    +  ++IT+SDD T+K+WD +T      L        F     + P+ 
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI- 242
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKT 581
                     +I+ S+DGT+K+W+  T
Sbjct: 243 ----------IISGSEDGTLKIWNSST 259

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94  IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
           I+ GSDD  ++V++  TG                     K  ++SGS D T+++W+ E+ 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
             L     GH   V CV ++ K      SG  D  VK+W+    T        QE  V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
              Y L  +  +++ SDD T+K+W   T  C+ TL GH   V  +       IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
            TLK W+++    E+ L +G     C  T        I   F   F  L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR----ICLFDGVH-----VVSGSLDTSIRVWE 442
           R N ++ G+ D  ++V++  +G K + F           VH     V+SGS D ++++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
            E+   L  T  GH+     +       +   SG  D TVKVW +  GQ     +     
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
           +  V  + +    +  ++IT+SDD T+K+WD +T      L        F     + P+ 
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI- 242
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKT 581
                     +I+ S+DGT+K+W+  T
Sbjct: 243 ----------IISGSEDGTLKIWNSST 259

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94  IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
           I+ GSDD  ++V++  TG                     K  ++SGS D T+++W+ E+ 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
             L     GH   V CV ++ K      SG  D  VK+W+    T        QE  V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
              Y L  +  +++ SDD T+K+W   T  C+ TL GH   V  +       IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
            TLK W+++    E+ L +G     C  T        I   F   F  L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR----ICLFDGVH-----VVSGSLDTSIRVWE 442
           R N ++ G+ D  ++V++  +G K + F           VH     V+SGS D ++++W 
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
            E+   L  T  GH+     +       +   SG  D TVKVW +  GQ     +     
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPL---MSSFILNPFYFLIYSQ 551
           +  V  + +    +  ++IT+SDD T+K+WD +T      L   MS+     F+      
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH------ 237
Query: 552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581
           P L          +I+ S+DGT+K+W+  T
Sbjct: 238 PTLP--------IIISGSEDGTLKIWNSST 259

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
           LR TL GH    + +     + N+L+S + D T+  W +    +K    +  F       
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
                  DG + +S S D ++R+W+  +G      +GH+S  ++  ++ + ++++SG+ D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
            T+KVW I  GQCL TL G N   S V  +       +S  +I++ +D  VK W++   +
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
                +     N     + + P        +   + ++  DG + LW++
Sbjct: 188 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIMLWNL 225

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
           LR TL GH    + +     + N+L+S + D T+  W +       G  +++  G + H 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
                L  +  + +++S D T++LWDV TGE               F+ +   ++   + 
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
             +  +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
           QP  LL A+  +T  SW+   +D      +            +H+        DG + +S
Sbjct: 23  QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 76
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
            S D ++R+W+  +G      +GH+S  ++  ++ + ++++SG+ D T+KVW        
Sbjct: 77  ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 136
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
                 D VS  + +       D V ++S   D  ++ W      +    +GH S    L
Sbjct: 137 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 196
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
           T+  +    ++ S   D  + +W++ + + + TLS     Q  V  L F+ +R+ + ++ 
Sbjct: 197 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 250
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
              +K+               F L+P Y +   +P          PH        + + +
Sbjct: 251 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 295
Query: 566 ITSSDDGTVKLWDVKTGE 583
                D  +++W V T  
Sbjct: 296 FAGYTDNVIRVWQVMTAN 313

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
           LR TL GH    + +     + N+L+S + D T+  W +       G  +++  G + H 
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 61
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
                L  +  + +++S D T++LWDV TGE               F+ +   ++   + 
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 110
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
             +  +I+ S D T+K+W +K
Sbjct: 111 KKASMIISGSRDKTIKVWTIK 131

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
           QP  LL A+  +T  SW+   +D      +            +H+        DG + +S
Sbjct: 29  QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
            S D ++R+W+  +G      +GH+S  ++  ++ + ++++SG+ D T+KVW        
Sbjct: 83  ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
                 D VS  + +       D V ++S   D  ++ W      +    +GH S    L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
           T+  +    ++ S   D  + +W++ + + + TLS     Q  V  L F+ +R+ + ++ 
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
              +K+               F L+P Y +   +P          PH        + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
                D  +++W V T  
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
           LR TL GH    + +     + N+L+S + D T+  W +       G  +++  G + H 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
                L  +  + +++S D T++LWDV TGE               F+ +   ++   + 
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
             +  +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
           QP  LL A+  +T  SW+   +D      +            +H+        DG + +S
Sbjct: 29  QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
            S D ++R+W+  +G      +GH+S  ++  ++ + ++++SG+ D T+KVW        
Sbjct: 83  ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
                 D VS  + +       D V ++S   D  ++ W      +    +GH S    L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
           T+  +    ++ S   D  + +W++ + + + TLS     Q  V  L F+ +R+ + ++ 
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
              +K+               F L+P Y +   +P          PH        + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
                D  +++W V T  
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
           LR TL GH    + +     + N+L+S + D T+  W +       G  +++  G + H 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
                L  +  + +++S D T++LWDV TGE               F+ +   ++   + 
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
             +  +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
           QP  LL A+  +T  SW+   +D      +            +H+        DG + +S
Sbjct: 29  QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
            S D ++R+W+  +G      +GH+S  ++  ++ + ++++SG+ D T+KVW        
Sbjct: 83  ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
                 D VS  + +       D V ++S   D  ++ W      +    +GH S    L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
           T+  +    ++ S   D  + +W++ + + + TLS     Q  V  L F+ +R+ + ++ 
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
              +K+               F L+P Y +   +P          PH        + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
                D  +++W V T  
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
           LR TL GH    + +     + N+L+S + D T+  W +       G  +++  G + H 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
                L  +  + +++S D T++LWDV TGE               F+ +   ++   + 
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
             +  +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 124/318 (38%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
           QP  LL A+  +T  SW+   +D      +            +H+        DG + +S
Sbjct: 29  QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVW-------- 408
            S D ++R+W+  +G      +GH+S    +++  + + ++SG+ D T+KVW        
Sbjct: 83  ASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
                 D VS  + +       D V ++S   D  ++ W      +    +GH S    L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
           T+  +    ++ S   D  + +W++ + +   TLS     Q  V  L F+ +R+ + ++ 
Sbjct: 203 TASPD--GTLIASAGKDGEIXLWNLAAKKAXYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
              +K+               F L+P Y +   +P          PH        + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
                D  +++W V T  
Sbjct: 302 FAGYTDNVIRVWQVXTAN 319

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 28/209 (13%)
Query: 356 VVSGSLDTSIRVWE--AESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIV 411
           VV+GSLD  ++VW+   E  +L+ +L GHQ     +++ +   I  S + D+ +++WD+ 
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 412 SGTK------------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL--MGHQS 457
           +G +             L F     D  ++ +G+    + ++  ESG   ++L   G   
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167
Query: 458 LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITS 515
           L+         L SG  D  + ++DI +G+ L TL G   H   +  L F  +S+ ++T+
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLLVTA 224
Query: 516 SDDGTVKLWDVKTGEFSTPL--MSSFILN 542
           SDDG +K++DV+    +  L   +S++LN
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLN 253

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 429 VVSGSLDTSIRVWE--AESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIV 484
           VV+GSLD  ++VW+   E  +L+ +L GHQ     +++ +   I  S + D+ +++WD+ 
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG--EFSTPLMSSFILN 542
           +G+ ++++       +       +S+++ T +  G V ++ V++G  E+S      FIL+
Sbjct: 111 NGKQIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
             Y          P    + +++ + + DG + ++D+ TG+ + 
Sbjct: 170 IAY---------SP----DGKYLASGAIDGIINIFDIATGKLLH 200

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 323 LLWR----EKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378
           +LW+    +K    A       +H  +      DG   +SGS D  +R+W+  +G     
Sbjct: 408 ILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR 467
Query: 379 LMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH-------- 428
            +GH    L+    L N  +VS + D T+K+W+ +   K   + I      H        
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVR 524
Query: 429 ---------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADST 477
                    +VS S D +++VW   +  LR TL GH    S + +    ++  SG  D  
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKT 528
           V +WD+  G+ L +L       S +  L F+ +R+ + ++ +  +K+WD+++
Sbjct: 585 VLLWDLAEGKKLYSLEA----NSVIHALCFSPNRYWLCAATEHGIKIWDLES 632

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 48/239 (20%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDI-------------VSGTKKLM 418
           L+ T+  H  + + +       +I+VS + D ++ +W +             ++G    +
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 419 FRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
             + L  DG   +SGS D  +R+W+  +G      +GH    L+    L N  +VS + D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 476 STVKVWDIVSGQCLQTLS-GRNKHQSAVTCLQFNSR----FVITSSDDGTVKLWDVKTGE 530
            T+K+W+ + G+C  T+S G   H+  V+C++F+       ++++S D TVK+W++   +
Sbjct: 494 RTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 531 FSTPL------MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
             + L      +S+  ++P                 +     +   DG V LWD+  G+
Sbjct: 553 LRSTLAGHTGYVSTVAVSP-----------------DGSLCASGGKDGVVLLWDLAEGK 594

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
           R  + H+  ++   +  D   +VS S D  + +W++ + N  H +    S  +T      
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
            N +  G  D+   ++++      V  +++L         C F D   +V+ S DT+  +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
           W+ E+G    T  GH      + L  +  + VSG  D++ K+WD+  G C QT +G    
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 239
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
            +A+ C   N     T SDD T +L+D++  +         I+     + +S+       
Sbjct: 240 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 291
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
             + R ++   DD    +WD 
Sbjct: 292 --SGRLLLAGYDDFNCNVWDA 310

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
           R  + H+  ++   +  D   +VS S D  + +W++ + N  H +    S  +T      
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
            N +  G  D+   ++++      V  +++L         C F D   +V+ S DT+  +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
           W+ E+G    T  GH      + L  +  + VSG  D++ K+WD+  G C QT +G    
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
            +A+ C   N     T SDD T +L+D++  +         I+     + +S+       
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
             + R ++   DD    +WD 
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
           R  + H+  ++   +  D   +VS S D  + +W++ + N  H +    S  +T      
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
            N +  G  D+   ++++      V  +++L         C F D   +V+ S DT+  +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
           W+ E+G    T  GH      + L  +  + VSG  D++ K+WD+  G C QT +G    
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
            +A+ C   N     T SDD T +L+D++  +         I+     + +S+       
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
             + R ++   DD    +WD 
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
           R  + H+  ++   +  D   ++S S D  + +W++ + N  H +    S  +T      
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
            N +  G  D+   ++++      V  +++L         C F D   +V+ S DT+  +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
           W+ E+G    T  GH      + L  +  + VSG  D++ K+WD+  G C QT +G    
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
            +A+ C   N     T SDD T +L+D++  +         I+     + +S+       
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
             + R ++   DD    +WD 
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
           R  + H+  ++   +  D   ++S S D  + +W++ + N  H +    S  +T      
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
            N +  G  D+   ++++      V  +++L         C F D   +V+ S DT+  +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
           W+ E+G    T  GH      + L  +  + VSG  D++ K+WD+  G C QT +G    
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
            +A+ C   N     T SDD T +L+D++  +         I+     + +S+       
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
             + R ++   DD    +WD 
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 37/255 (14%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADSTVKVWD 409
           D   +VS S D  + VW++ + N  H  T+     +          +  G  D+   V+ 
Sbjct: 75  DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134
Query: 410 IVSGTKKLM-------------FRICLFDG--VHVVSGSLDTSIRVWEAESGNLRHTLMG 454
           +     + M                C F    + +++ S D +  +W+ ESG L  +  G
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194
Query: 455 HQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N 508
           H +    ++L      N  VSG  D    VWD+ SGQC+Q       H+S V  +++  +
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPS 251
Query: 509 SRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567
                + SDD T +L+D++   E +     S I                    + R +  
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV----------DFSLSGRLLFA 301
Query: 568 SSDDGTVKLWDVKTG 582
             +D T+ +WDV  G
Sbjct: 302 GYNDYTINVWDVLKG 316

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 27/250 (10%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 409
           DG   +SGS D ++R+W+  +G      +GH    L+      N  +VSG+ D T+K+W+
Sbjct: 74  DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 410 IVSGTKKLMFRICLFDGVH------------VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
            +   K  +      + V             +VS   D  ++VW   +  L+   +GH  
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 193
Query: 458 L--TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVIT 514
              T  +    ++  SG  D    +WD+  G+ L TL G +     +  L F+ +R+ + 
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALCFSPNRYWLC 249
Query: 515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS--RFVITSSDDG 572
           ++   ++K+WD++       L    I         ++P  C  L +++  + +     D 
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSS----KAEPPQCTSLAWSADGQTLFAGYTDN 305
Query: 573 TVKLWDVKTG 582
            V++W V  G
Sbjct: 306 LVRVWQVTIG 315

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 444 ESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGR----N 496
           E   LR TL GH    + +       ++++S + D T+ +W +   +    +  R    +
Sbjct: 3   EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556
            H  +   +  + +F ++ S DGT++LWD+ TG  +             F+ +++ +L  
Sbjct: 63  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR-----------RFVGHTKDVLSV 111
Query: 557 HLQFNSRFVITSSDDGTVKLWD 578
               ++R +++ S D T+KLW+
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWN 133

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 37/255 (14%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 409
           DG   +SGS D ++R+W+  +G      +GH    L+      N  +VSG+ D T+K+W+
Sbjct: 97  DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 410 IVSGTKKLMFRICLFDGVH-----------------VVSGSLDTSIRVWEAESGNLRHTL 452
            +      + +  + D  H                 +VS   D  ++VW   +  L+   
Sbjct: 157 TLG-----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 453 MGHQSL--TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-S 509
           +GH     T  +    ++  SG  D    +WD+  G+ L TL G +     +  L F+ +
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALCFSPN 267
Query: 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS--RFVIT 567
           R+ + ++   ++K+WD++       L    I         ++P  C  L +++  + +  
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS----KAEPPQCTSLAWSADGQTLFA 323
Query: 568 SSDDGTVKLWDVKTG 582
              D  V++W V  G
Sbjct: 324 GYTDNLVRVWQVTIG 338

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 444 ESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGR----N 496
           E   LR TL GH    + +       ++++S + D T+ +W +   +    +  R    +
Sbjct: 26  EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85
Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556
            H  +   +  + +F ++ S DGT++LWD+ TG  +             F+ +++ +L  
Sbjct: 86  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR-----------RFVGHTKDVLSV 134
Query: 557 HLQFNSRFVITSSDDGTVKLWD 578
               ++R +++ S D T+KLW+
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWN 156

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 340 KTHVPDLF--GFQFDGVHVVSGSLDTSIRVWEAES-----GNL--RHTLMGHQSLTSGME 390
           K H P +    F  +G  V  G LD++  ++   S     GN+     L GH+   S  +
Sbjct: 105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164
Query: 391 L---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN 447
               +   L++G+ D T  +WD+ +G      RI +F       GS        E  SG+
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQ-----RISIF-------GS--------EFPSGH 204
Query: 448 LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI-VSGQCLQTLSGRNKHQSAVTCLQ 506
               L       S   L  N+ +SG+ D+TV++WD+ ++ + ++T  G     ++V    
Sbjct: 205 TADVLS-----LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 507 FNSRFVITSSDDGTVKLWDVKTG 529
              RF  T SDDGT +L+D++TG
Sbjct: 260 DGQRFG-TGSDDGTCRLFDMRTG 281

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL---TSGMELRNNILVSGNADSTV 405
           FQ DGV V+SGS D + +VW+   G+L + L  H +       +    N  ++ +AD T+
Sbjct: 112 FQ-DGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167
Query: 406 KVWD------IVSGTKKLMFR-ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
           K+W         SG    + R + + D  H +S S D  I++ +  +G++  T  GH+S 
Sbjct: 168 KLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 459 TSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD 517
              ++L  N  +VS   D TV++W   +G   Q ++       +V C   N   ++ SSD
Sbjct: 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXS-NGDIIVGSSD 286
Query: 518 D 518
           +
Sbjct: 287 N 287

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL---TSGMELRNNILVSGNADSTVKVW 481
           DGV V+SGS D + +VW+   G+L + L  H +       +    N  ++ +AD T+K+W
Sbjct: 114 DGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170
Query: 482 DIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540
              + + ++T SG   H   V  L   +    I+ S+DG +KL D  TG+         +
Sbjct: 171 Q--NDKVIKTFSGI--HNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGD---------V 217
Query: 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF 584
           L  +    +   + C  L  N   +++  +D TV++W  + G  
Sbjct: 218 LRTYEG--HESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSL 258

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 51/242 (21%)
Query: 376 RHTLMGHQ----SLTSGMELRNN----ILVSGNADSTVKVWDIVSGTKKLMFRI---CLF 424
           R  L GH     S+ +G   + N    +L+SG+ D TV +W +    +   F I    L 
Sbjct: 14  RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 425 DGVHVVS-------------GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNIL 469
              H VS              S D ++R+W+  +G      +GHQS   +      N  +
Sbjct: 74  GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN------------SRFVITSSD 517
           +S  A+  +K+W+I+ G+C  + + +  H   V+C++++            + +  +   
Sbjct: 134 LSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577
           DG +K+W+           ++F +  + F  +   +    +  N +++ T   D  + +W
Sbjct: 193 DGRLKVWN-----------TNFQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 578 DV 579
           D+
Sbjct: 241 DI 242

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 114 LLVSGSRDATLRVWHIESG-------ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
           LL +GS D+T+ +W  E         + L ++ GH   V+ V +  DG  + + + D  V
Sbjct: 72  LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 165 KIWNPDTE----ECLHAELQETEVELSH--GYALRSRIVSGSDDNTLKVWSATTG--KCL 216
            IW  D      EC+   LQE   ++ H   +   + + S S D+T+++W       +C+
Sbjct: 132 WIWETDESGEEYECISV-LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190
Query: 217 RTLIGHTGGVWSSQMAGNI----IISGSTDRTLKGW 248
             L GH G VWSS          + SGS D T++ W
Sbjct: 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 48/246 (19%)
Query: 321 DNLLWREKCLEAATL--HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378
           +NL ++   ++A  L  H    T V     +  +G  + S S D+S  VW + +G    T
Sbjct: 14  ENLYFQGSHMKAIKLTGHERPLTQVK----YNKEGDLLFSCSKDSSASVWYSLNGERLGT 69
Query: 379 LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG-----------TKKLMFRIC--- 422
           L GH      +++       V+G+AD ++K+WD+ +G            K++ F  C   
Sbjct: 70  LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY 129
Query: 423 ---LFDGVHVVSGSLDTSIRVWEAESGNLRHTL-----------MGHQSL----TSGMEL 464
              + D V    G    SI ++E E  +  H L           + H+ L     +G   
Sbjct: 130 FLAILDNVMKNPG----SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185
Query: 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS--RFVITSSDDGTVK 522
           +   +++G+ D  +  +D+ +    + +   + H+ +++ +QF+    + ITSS D    
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243
Query: 523 LWDVKT 528
           L DV T
Sbjct: 244 LVDVST 249

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 114 LLVSGSRDATLRVW--HIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP 169
            L S S DAT  +W  + +  EC+  L GH   V+ V +   G L+ + + D  V +W  
Sbjct: 75  YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Query: 170 DTE---EC---LHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGK--CLRTLIG 221
           D E   EC   L++  Q+ +  + H    +  + S S D+T+K++        C  TL G
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWH--PSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 222 HTGGVWSSQM--AGNIIISGSTDRTLKGW 248
           H   VWS     +G  + S S DRT++ W
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 120/272 (44%), Gaps = 37/272 (13%)
Query: 340 KTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNI 395
           + HV ++   +F   G  ++S S D  +++W  + G+   TL+GH++  + + +  R   
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 396 LVSGNADSTVKVWDIVSGTKKLMF--RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 453
           ++S + D T+++W+  +GT    F  +    DGV+ ++  + T  ++ E  +    +   
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 454 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQFNSRFV 512
           G    T G       +++G+    + V ++ S  Q +Q  S      +++T    N+ ++
Sbjct: 256 G----TYG-----KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYI 306
Query: 513 ITSSDDGTVKLWDVKT-----GEF----STPLMSSFILNPFYFL-----------IYSQP 552
               ++G +  WD+++     GEF     TP+ + +      F+           I S P
Sbjct: 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366
Query: 553 LLC-PHLQFNSRFVITSSDDGTVKLWDVKTGE 583
               P ++F +   + S+DD   +   V   E
Sbjct: 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 117/260 (45%), Gaps = 37/260 (14%)
Query: 340 KTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNI 395
           + HV ++   +F   G  ++S S D  +++W  + G+   TL+GH++  + + +  R   
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 396 LVSGNADSTVKVWDIVSGTKKLMF--RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 453
           ++S + D T+++W+  +GT    F  +    DGV+ ++  + T  ++ E  +    +   
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 454 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQFNSRFV 512
           G    T G       +++G+    + V ++ S  Q +Q  S      +++T    N+ ++
Sbjct: 253 G----TYG-----KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYI 303
Query: 513 ITSSDDGTVKLWDVKT-----GEF----STPLMSSFILNPFYFL-----------IYSQP 552
               ++G +  WD+++     GEF     TP+ + +      F+           I S P
Sbjct: 304 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 363
Query: 553 LLC-PHLQFNSRFVITSSDD 571
               P ++F +   + S+DD
Sbjct: 364 ESERPAIEFETPTFLVSNDD 383

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 41/276 (14%)
Query: 332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 391
           A +    K T+      +  DG  +V+G  +  +R+W  ++G L + L  H++    ++ 
Sbjct: 99  ALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW 157
Query: 392 RNNI--LVSGNADSTVKVWDIVSGTKKLMFRICLFDGV------HVVSGSLDT------- 436
             +   ++S + ++   +W+++SGT    F +    G       H   GSL         
Sbjct: 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 437 ----------SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV 484
                     +I V++         L+GH    S +E    N +L+S + D T+++W   
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF 544
           +G       G +  QS V+        VI+ S DG+V+LW +K       L++  I++  
Sbjct: 278 NGNSQNCFYGHS--QSIVSASWVGDDKVISCSMDGSVRLWSLK----QNTLLALSIVDGV 331
Query: 545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580
                  P+    +  + +    +  DG V ++D+K
Sbjct: 332 -------PIFAGRISQDGQKYAVAFMDGQVNVYDLK 360

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRN-NILVSGNADSTVKVWDI 483
           +V++ +LD S+ +W A SG++   L   Q    ++S   ++  N L  G + + V++WD+
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP 543
              + L+ ++    H + V  L +NS  + + S  G +   DV+  E     +S      
Sbjct: 188 QQQKRLRNMT---SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 239
Query: 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
                +SQ +       + R + +  +D  V +W    GE
Sbjct: 240 -----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRN-NILVSGNADSTVKVWDI 483
           +V++ +LD S+ +W A SG++   L   Q    ++S   ++  N L  G + + V++WD+
Sbjct: 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP 543
              + L+ ++    H + V  L +NS  + + S  G +   DV+  E     +S      
Sbjct: 177 QQQKRLRNMT---SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 228
Query: 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
                +SQ +       + R + +  +D  V +W    GE
Sbjct: 229 -----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR-NNILVSGNADSTVKVWDI 483
           +V++ +LD S+ +W A SG++   L   Q    ++S   ++  N L  G + + V++WD+
Sbjct: 37  NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP 543
              Q  + L     H + V  L +NS  + + S  G +   DV+  E     +S      
Sbjct: 97  ---QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 148
Query: 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
                +SQ +       + R + +  +D  V +W    GE
Sbjct: 149 -----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/250 (18%), Positives = 96/250 (38%), Gaps = 24/250 (9%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV 411
           DG  +  G  +  + +++ ES     T+ GHQ+    +    ++L SG+    +   D+ 
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204
Query: 412 SGTKKL------MFRICLF----DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 461
               ++         +C      DG+ + SG  D  +++W+A S   + T   H +    
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264
Query: 462 M---ELRNNILVSGNA--DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS 516
           +     ++N+L +G    D  +  W+  +G  + T+   ++  S +              
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324
Query: 517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL 576
            D  + +W            SS +        +   +L   L  + R + T++ D  +K 
Sbjct: 325 PDNNLSIWSYS---------SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375
Query: 577 WDVKTGEFIR 586
           W V  G+ ++
Sbjct: 376 WRVYDGDHVK 385

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 417 LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR------NNILV 470
           L F      G  +++GS    +R WE +      T+   Q + +G  L        + + 
Sbjct: 45  LSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 471 SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDV 526
           + + D T K+WD+ S Q +Q      +H + V  + +    N   V+T S D T+K WD 
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 527 KTGEFSTPLM 536
           ++   S P+M
Sbjct: 159 RS---SNPMM 165

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 44/208 (21%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRNNILVSGNADSTVKVWDIVS 412
           V  G+    +++ + +SG+  H L GH+      S     + IL + +ADS VK+WD+  
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 413 GTKKLMF------------------------RICLF-DGVHVVSGSLDTSIRVWEAESGN 447
            +  L+                          +C   DG+H+++   D  +R+W + +G 
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG- 277
Query: 448 LRHTLMGHQSLTSGMELRNNILVSGNAD---------STVKVWDIVSGQCLQTLSGRNKH 498
             +TL+ +  + +  +      VS             ST+ V+ + SG+ +  L G   H
Sbjct: 278 -ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG---H 333
Query: 499 QSAVTCLQFNSRF--VITSSDDGTVKLW 524
              V C  F S F  + + S D  +  W
Sbjct: 334 YKTVDCCVFQSNFQELYSGSRDCNILAW 361

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTK--KLMFRICLFDGV------ 427
           L GHQ    G+   +N+   L+S + D TV +WDI +G K  K++    +F G       
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 428 ---HVVSGSL------DTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNN---ILVSG 472
              H++  SL      D  + +W+  S       H +  H +  + +        IL +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 473 NADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV-KTGE 530
           +AD TV +WD+ + +  L T          V     N   + +S  D  + +WD+ K GE
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTK--KLMFRICLFDGV------ 427
           L GHQ    G+   +N+   L+S + D TV +WDI +G K  K++    +F G       
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 428 ---HVVSGSL------DTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNN---ILVSG 472
              H++  SL      D  + +W+  S       H +  H +  + +        IL +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 473 NADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV-KTGE 530
           +AD TV +WD+ + +  L T          V     N   + +S  D  + +WD+ K GE
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 32/186 (17%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTK--KLMFRICLFDGV------ 427
           L GHQ    G+    N+   L+S + D T+ +WDI +  K  K++    +F G       
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 428 ---HVVSGSL------DTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNN---ILVSG 472
              H++  SL      D  + +W+  S N     H++  H +  + +        IL +G
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDV-KT 528
           +AD TV +WD+ + +    L     H+  +  +Q+   N   + +S  D  + +WD+ K 
Sbjct: 293 SADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Query: 529 GEFSTP 534
           GE  +P
Sbjct: 351 GEEQSP 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435
           L GHQ    G+    N+   L+S + D T+ +WDI +  K+                   
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------ 222
Query: 436 TSIRVWEAESGNLRHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTL 492
              RV +A     ++   GH ++   +    L  ++  S   D  + +WD  +    +  
Sbjct: 223 ---RVIDA-----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 274
Query: 493 SGRNKHQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
              + H + V CL FN  S F++ T S D TV LWD++  +       S     F     
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----- 329
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGE 583
            Q    PH   N   + +S  D  + +WD+ K GE
Sbjct: 330 -QVQWSPH---NETILASSGTDRRLHVWDLSKIGE 360

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435
           L GHQ    G+    N+   L+S + D T+ +WDI +  K+                   
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------ 218
Query: 436 TSIRVWEAESGNLRHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTL 492
              RV +A     ++   GH ++   +    L  ++  S   D  + +WD  +    +  
Sbjct: 219 ---RVIDA-----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270
Query: 493 SGRNKHQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
              + H + V CL FN  S F++ T S D TV LWD++  +       S     F     
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----- 325
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGE 583
            Q    PH   N   + +S  D  + +WD+ K GE
Sbjct: 326 -QVQWSPH---NETILASSGTDRRLHVWDLSKIGE 356

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435
           L GHQ    G+    N+   L+S + D T+ +WDI +  K+                   
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------ 220
Query: 436 TSIRVWEAESGNLRHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTL 492
              RV +A     ++   GH ++   +    L  ++  S   D  + +WD  +    +  
Sbjct: 221 ---RVIDA-----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 272
Query: 493 SGRNKHQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
              + H + V CL FN  S F++ T S D TV LWD++  +       S     F     
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----- 327
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGE 583
            Q    PH   N   + +S  D  + +WD+ K GE
Sbjct: 328 -QVQWSPH---NETILASSGTDRRLHVWDLSKIGE 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	635
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.52
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.5
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.49
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.47
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.42
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.4
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.38
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.38
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.34
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.32
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.28
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.28
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.27
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.21
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.16
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.16
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.16
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.14
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.13
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.08
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.03
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.02
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.01
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.99
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.88
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.71
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.7
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.67
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.52
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.47
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.42
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.33
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.31
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.04
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.98
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.78
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.76
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.72
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.66
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.64
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.56
3ott_A	758	Two-component system sensor histidine kinase; beta	97.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.43
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.42
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.42
3ott_A	758	Two-component system sensor histidine kinase; beta	97.39
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.33
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.3
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.3
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.26
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.23
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.21
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.19
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.18
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.14
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.05
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.01
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.97
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.87
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.76
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.32
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.0
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.96
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.91
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.83
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.22
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.68
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.84
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.73
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.55
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.74
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	87.79
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	86.65
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	85.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	85.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.22
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	82.05
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	81.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	81.66

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-63  Score=512.43  Aligned_cols=529  Identities=30%  Similarity=0.473  Sum_probs=427.3

Q ss_pred             CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018         16 KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        16 ~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      +++..|+||.+.| +||+||    |||++||+++.+        ..+.||| .+++++++|.+|.+.| ++++|+  +++
T Consensus         7 ~e~~~L~GH~~~V-~~~a~s----pdg~~las~~~d--------~~v~iWd-~~~~~~~~l~gh~~~V-~~l~fspdg~~   71 (577)
T 2ymu_A            7 KERNRLEAHSSSV-RGVAFS----PDGQTIASASDD--------KTVKLWN-RNGQLLQTLTGHSSSV-WGVAFSPDGQT   71 (577)
T ss_dssp             CEEEEECCCSSCE-EEEEEC----TTSSCEEEEETT--------SEEEEEC-TTSCEEEEEECCSSCE-EEEEECTTSSE
T ss_pred             EEeeEECCCCCcE-EEEEEC----CCCCEEEEEeCC--------CEEEEEE-CCCCEEEEEeCCCCCE-EEEEECCCCCE
Confidence            3446699999999 999999    999999999764        4455799 5788999999999998 999999  999


Q ss_pred             EEEeeCCCcEEEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018         94 IVSGSDDNTLKVWSATTGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--  150 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--  150 (635)
                      ||+++.|++|+|||.. ++.+                     +++++.|+.+++|+... .....+.+|...|.++.+  
T Consensus        72 las~~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~  149 (577)
T 2ymu_A           72 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP  149 (577)
T ss_dssp             EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECT
T ss_pred             EEEEeCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeec
Confidence            9999999999999964 4433                     88999999999999754 456677789999999999  


Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ  230 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  230 (635)
                      ++..+++++.++.+++|+...............+......+++..+++++.|+.|++||. +++.+..+.+|...|.+++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~  228 (577)
T 2ymu_A          150 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA  228 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred             CCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEE
Confidence            888999999999999999766554444444455566666677889999999999999995 6788899999999999999


Q ss_pred             ee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        231 MA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       231 ~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      |+  +..|++++.|+.|++|+.......                             ........+..+.|.|++..+..
T Consensus       229 ~s~dg~~l~~~~~d~~i~~w~~~~~~~~-----------------------------~~~~~~~~v~~v~~~~d~~~l~~  279 (577)
T 2ymu_A          229 FSPDGQTIASASDDKTVKLWNRNGQLLQ-----------------------------TLTGHSSSVNGVAFRPDGQTIAS  279 (577)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEE-----------------------------EECCCSSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCCEEE-----------------------------EEecCCCCEEEEEEcCCCCEEEE
Confidence            95  789999999999999996543211                             01112334555667777666555


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                      +.......+........       .  ....+......++++|++.++++++.|+.|++|+.. +..+..+.+|...+.+
T Consensus       280 ~~~d~~i~~w~~~~~~~-------~--~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~  349 (577)
T 2ymu_A          280 ASDDKTVKLWNRNGQLL-------Q--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWG  349 (577)
T ss_dssp             EETTSCEEEEETTSCEE-------E--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred             EeCCCEEEEEeCCCcEE-------E--EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEE
Confidence            44333333322211110       0  011223345567899999999999999999999976 5566788899999999


Q ss_pred             EEEe--CCEEEEEeCCCcEEEEEccCCc--------ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCcc
Q psy18018        389 MELR--NNILVSGNADSTVKVWDIVSGT--------KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL  458 (635)
Q Consensus       389 l~~~--~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  458 (635)
                      ++++  +..+++++.|+.+++|+.....        .......++|++++|++++.|+.|++||. +++.+..+.+|...
T Consensus       350 ~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  428 (577)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC
Confidence            9997  6799999999999999965321        11222347899999999999999999995 57888899999999


Q ss_pred             EEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018        459 TSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       459 v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~  534 (635)
                      |.+++++  +++|++++.|+.|++||. +++.+..+..   |...|.+++|  ++++|++++.|+.|++||. +++.+..
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~  503 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  503 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence            9999884  669999999999999996 4677778877   8899999999  6899999999999999995 5666555


Q ss_pred             eccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEE
Q psy18018        535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV  614 (635)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~  614 (635)
                      +..           |...|++++|+||+++||+++.|+.|++||. +++++..+     .+|.++|++++|+|||++|++
T Consensus       504 ~~~-----------h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-----~~h~~~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          504 LTG-----------HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             EEC-----------CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-----ECCSSCEEEEEECTTSSCEEE
T ss_pred             EeC-----------CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-----cCCCCCEEEEEEcCCCCEEEE
Confidence            543           7889999999999999999999999999996 68888888     579999999999999999999


Q ss_pred             ccCCCeeEeEEE
Q psy18018        615 GSRNGTEETKLL  626 (635)
Q Consensus       615 ~~~dg~~~~~l~  626 (635)
                      ++.|++  +++|
T Consensus       567 ~~~D~~--i~~W  576 (577)
T 2ymu_A          567 ASSDKT--VKLW  576 (577)
T ss_dssp             EETTSC--EEEE
T ss_pred             EeCCCE--EEEe
Confidence            999998  4554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-62  Score=506.91  Aligned_cols=505  Identities=16%  Similarity=0.180  Sum_probs=408.5

Q ss_pred             eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCC--CceeeccCcceE
Q psy18018          7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKD--PKVLKGHDDHVI   84 (635)
Q Consensus         7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~--~~~l~~h~~~vi   84 (635)
                      ++.|+......++.|.||.+.| ++++||    |||++||+++.++        .+.|||..+++.  ...+.+|.+.| 
T Consensus        41 v~l~~~~~~~~~~~~~~h~~~v-~~~~~s----pdg~~lasg~~d~--------~v~lWd~~~~~~~~~~~~~~~~~~v-  106 (611)
T 1nr0_A           41 VYTVPVGSLTDTEIYTEHSHQT-TVAKTS----PSGYYCASGDVHG--------NVRIWDTTQTTHILKTTIPVFSGPV-  106 (611)
T ss_dssp             EEEEETTCSSCCEEECCCSSCE-EEEEEC----TTSSEEEEEETTS--------EEEEEESSSTTCCEEEEEECSSSCE-
T ss_pred             EEEecCCCcccCeEecCCCCce-EEEEEC----CCCcEEEEEeCCC--------CEEEeECCCCcceeeEeecccCCce-
Confidence            4678877778889999999998 999999    9999999998754        445699876543  45788999988 


Q ss_pred             EEEEEc--CCEEEEeeCC----CcEEEEECCC--------------------CcEEEEEeeCCCcEEEEeCCCCeEEEEe
Q psy18018         85 TCLQFS--GSRIVSGSDD----NTLKVWSATT--------------------GKCLLVSGSRDATLRVWHIESGECLHVL  138 (635)
Q Consensus        85 ~~~~~s--~~~l~s~~~d----~~v~vWd~~~--------------------~~~ll~~~~~dg~i~vwd~~~~~~~~~l  138 (635)
                      .+++|+  +++||+++.+    +.|++||...                    +...+++|+.|++|++||..++++...+
T Consensus       107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l  186 (611)
T 1nr0_A          107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  186 (611)
T ss_dssp             EEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence            999999  9999998875    4788887532                    2235999999999999999999999999


Q ss_pred             eCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc-------ccc-eeEEeeeccCCCEEEEEeCCCcEEEE
Q psy18018        139 VGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL-------QET-EVELSHGYALRSRIVSGSDDNTLKVW  208 (635)
Q Consensus       139 ~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~l~~~~~dg~i~vw  208 (635)
                      .+|...|.+++|  ++++|++++.|++|++||+.+++.+..+.       .+. .+....+.+++.+|++++.|++|++|
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            999999999999  89999999999999999999988776663       343 44445555677899999999999999


Q ss_pred             ECCCCeEEEEEeCC---CCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018        209 SATTGKCLRTLIGH---TGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI  285 (635)
Q Consensus       209 d~~~~~~~~~~~~h---~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (635)
                      |+.+++++.++..+   ...+..+.++++.+++++.|+.+++|+........                            
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~----------------------------  318 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ----------------------------  318 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE----------------------------
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce----------------------------
Confidence            99999999888643   44677888899999999999999999976532100                            


Q ss_pred             eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018        286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI  365 (635)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  365 (635)
                                                                        ....+......++|+|++++|++++.|+.|
T Consensus       319 --------------------------------------------------~~~gh~~~v~~l~~spdg~~l~s~s~D~~v  348 (611)
T 1nr0_A          319 --------------------------------------------------VRYGHNKAITALSSSADGKTLFSADAEGHI  348 (611)
T ss_dssp             --------------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             --------------------------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence                                                              001122345567899999999999999999


Q ss_pred             EEEEccCCceEEee-eCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcc------------eeEEEEEeeCCcEEEE
Q psy18018        366 RVWEAESGNLRHTL-MGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTK------------KLMFRICLFDGVHVVS  431 (635)
Q Consensus       366 ~v~~~~~~~~~~~~-~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~l~~  431 (635)
                      ++||+.+++....+ .+|...+.+++++ +..+++++.|+.+++|+......            ......+++++..+++
T Consensus       349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~  428 (611)
T 1nr0_A          349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA  428 (611)
T ss_dssp             EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred             EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence            99999999887766 6799999999997 66899999999999999876432            1223346788877777


Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee--EEecCCCcccccEEEEEe
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL--QTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~  507 (635)
                      + .++.+++|+  .++ ...+. |...+.++++  +++++++|+.|++|++||+.+++..  .. .   .|...|++++|
T Consensus       429 ~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~---~h~~~v~~v~f  499 (611)
T 1nr0_A          429 A-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I---VHPAEITSVAF  499 (611)
T ss_dssp             E-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E---ECSSCEEEEEE
T ss_pred             E-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c---CCCCceEEEEE
Confidence            7 567899998  344 44454 7777888877  5779999999999999999876532  22 2   38889999999


Q ss_pred             --cCCEEEEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        508 --NSRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       508 --~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                        ++++|++++.|++|++|++.+ ++......         ...|...|.+++|+||+++||+|+.|++|++||+.+++.
T Consensus       500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~---------~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~  570 (611)
T 1nr0_A          500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNS---------WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  570 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---------CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             CCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---------eeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence              699999999999999999987 44322100         112788999999999999999999999999999998753


Q ss_pred             -E-EeeeeccCCCC-CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        585 -I-RNLVSLDSGGS-GGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       585 -~-~~~~~~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                       + ..+     .+| ...|.+++|+||++ |++++.|++  +++|.++
T Consensus       571 ~~~~~~-----~~h~~~~v~~v~fs~d~~-l~s~~~D~~--i~lW~~~  610 (611)
T 1nr0_A          571 HPIIIK-----GAHAMSSVNSVIWLNETT-IVSAGQDSN--IKFWNVP  610 (611)
T ss_dssp             CCEEET-----TSSTTSCEEEEEEEETTE-EEEEETTSC--EEEEECC
T ss_pred             ccchhh-----ccCcccCeeEEEEcCCCE-EEEecCCCC--EEEEecc
Confidence             2 333     467 78999999999999 999999999  6777654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-59  Score=483.17  Aligned_cols=484  Identities=17%  Similarity=0.188  Sum_probs=382.7

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCC
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDD  100 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d  100 (635)
                      .+.+.+ .+++||    |||++||++..         ..+.+||..+++....+.+|.+.| ++++|+  |++||+|+.|
T Consensus        16 ~~~g~~-~~~~~s----pdg~~l~~~~~---------~~v~l~~~~~~~~~~~~~~h~~~v-~~~~~spdg~~lasg~~d   80 (611)
T 1nr0_A           16 TARGTA-VVLGNT----PAGDKIQYCNG---------TSVYTVPVGSLTDTEIYTEHSHQT-TVAKTSPSGYYCASGDVH   80 (611)
T ss_dssp             CCTTCC-CCCEEC----TTSSEEEEEET---------TEEEEEETTCSSCCEEECCCSSCE-EEEEECTTSSEEEEEETT
T ss_pred             cccCce-eEEeeC----CCCCEEEeCCC---------CEEEEecCCCcccCeEecCCCCce-EEEEECCCCcEEEEEeCC
Confidence            335556 689999    99999999863         245579999999999999999998 999999  9999999999


Q ss_pred             CcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC----CeEEEEeCCCccc
Q psy18018        101 NTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD----YMVKIWNPDTEEC  174 (635)
Q Consensus       101 ~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d----g~v~iwd~~~~~~  174 (635)
                      ++|+|||+.+++                   ......+.+|.++|.+++|  ++++|++++.+    +.|++||  .++.
T Consensus        81 ~~v~lWd~~~~~-------------------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~  139 (611)
T 1nr0_A           81 GNVRIWDTTQTT-------------------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTS  139 (611)
T ss_dssp             SEEEEEESSSTT-------------------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCB
T ss_pred             CCEEEeECCCCc-------------------ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCC
Confidence            999999987543                   2345677899999999999  89999999875    4788887  4555


Q ss_pred             eeeccccceeEEeeeccCC-C-EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecc
Q psy18018        175 LHAELQETEVELSHGYALR-S-RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSN  250 (635)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~  250 (635)
                      ...+..+...+..+.+.++ . +|++++.|++|++||..+++++.++.+|...|.+++|+  +++|++++.|++|++||.
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            6666777666666666654 3 69999999999999999999999999999999999994  789999999999999997


Q ss_pred             cceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhh
Q psy18018        251 AERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL  330 (635)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (635)
                      .++.......                                                                      
T Consensus       220 ~~g~~~~~~~----------------------------------------------------------------------  229 (611)
T 1nr0_A          220 VDGTKTGVFE----------------------------------------------------------------------  229 (611)
T ss_dssp             TTCCEEEECB----------------------------------------------------------------------
T ss_pred             CCCcEeeeec----------------------------------------------------------------------
Confidence            6543210000                                                                      


Q ss_pred             hhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCC---CcceeEEEEeCCEEEEEeCCCcEEE
Q psy18018        331 EAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH---QSLTSGMELRNNILVSGNADSTVKV  407 (635)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~v~~l~~~~~~l~s~~~dg~i~i  407 (635)
                       ........+......++|+|++++|++++.|+.|++||+.+++.+..+..+   ......+.++++.+++++.|+.+++
T Consensus       230 -~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~  308 (611)
T 1nr0_A          230 -DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF  308 (611)
T ss_dssp             -CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             -cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence             000000112334556789999999999999999999999999988877653   3456777888999999999999999


Q ss_pred             EEccCCccee---------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccEEEEEec-CCEEEEEeCCC
Q psy18018        408 WDIVSGTKKL---------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELR-NNILVSGNADS  476 (635)
Q Consensus       408 wd~~~~~~~~---------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg  476 (635)
                      |+...++...         ....++|++++|++++.|++|++||+.+++....+ .+|...+.++.+. +..+++++.|+
T Consensus       309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~  388 (611)
T 1nr0_A          309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD  388 (611)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred             EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence            9988764322         23357899999999999999999999999887766 5799999999985 45889999999


Q ss_pred             cEEEEECCCCceeE------E---------e------------------cC----CCcccccEEEEEe--cCCEEEEEeC
Q psy18018        477 TVKVWDIVSGQCLQ------T---------L------------------SG----RNKHQSAVTCLQF--NSRFVITSSD  517 (635)
Q Consensus       477 ~i~iwd~~~~~~~~------~---------~------------------~~----~~~~~~~v~~~~~--~~~~l~~~~~  517 (635)
                      .+++|+...+....      .         +                  ..    ...+...+.+++|  |+++|++|+.
T Consensus       389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~  468 (611)
T 1nr0_A          389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ  468 (611)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence            99999976532110      0         0                  00    0013455778888  6999999999


Q ss_pred             CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC-CceEEeeeeccCCCC
Q psy18018        518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT-GEFIRNLVSLDSGGS  596 (635)
Q Consensus       518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~  596 (635)
                      |++|++||+.+++....          ....|...|++++|+||+++|++++.|++|++||+.+ ++.+....   ...|
T Consensus       469 D~~v~lwd~~~~~~~~~----------~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---~~~H  535 (611)
T 1nr0_A          469 DSKVHVYKLSGASVSEV----------KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTFH  535 (611)
T ss_dssp             TSEEEEEEEETTEEEEE----------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCCC
T ss_pred             CCeEEEEEccCCceeee----------eccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---eeec
Confidence            99999999987643211          1134788999999999999999999999999999988 55433211   1358


Q ss_pred             CceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        597 GGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       597 ~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      ...|++++|+|||++||+++.|++  ++||.+
T Consensus       536 ~~~V~~v~fspdg~~lasgs~D~~--v~lW~~  565 (611)
T 1nr0_A          536 TAKVACVSWSPDNVRLATGSLDNS--VIVWNM  565 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSC--EEEEET
T ss_pred             ccceeEEEECCCCCEEEEEECCCc--EEEEEC
Confidence            999999999999999999999999  555544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-59  Score=528.90  Aligned_cols=541  Identities=21%  Similarity=0.329  Sum_probs=431.4

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIV   95 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~   95 (635)
                      ...+.||.+.| +|++||    |+|+++|+++.++        .+.+||..+++.+..+.+|.+.| .+++|+  +++||
T Consensus       608 ~~~~~~h~~~v-~~~~~s----~~~~~l~s~~~d~--------~i~vw~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~  673 (1249)
T 3sfz_A          608 RLVVRPHTDAV-YHACFS----QDGQRIASCGADK--------TLQVFKAETGEKLLDIKAHEDEV-LCCAFSSDDSYIA  673 (1249)
T ss_dssp             SEEECCCSSCE-EEEEEC----TTSSEEEEEETTS--------CEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEE
T ss_pred             eEEEecccccE-EEEEEC----CCCCEEEEEeCCC--------eEEEEECCCCCEEEEeccCCCCE-EEEEEecCCCEEE
Confidence            35778999999 999999    9999999998654        44569999999999999999988 999999  89999


Q ss_pred             EeeCCCcEEEEECCCCcEE-----------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018         96 SGSDDNTLKVWSATTGKCL-----------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--  150 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~l-----------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--  150 (635)
                      +++.|++|++||+.+++.+                       +++|+.||.|++||+++++++..+.+|.+.|++++|  
T Consensus       674 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred             EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence            9999999999999988764                       889999999999999999999999999999999999  


Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeecc---------------------------------------------------
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAEL---------------------------------------------------  179 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------------------------------------  179 (635)
                      ++++|++++.||+|++||+.+++......                                                   
T Consensus       754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~  833 (1249)
T 3sfz_A          754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA  833 (1249)
T ss_dssp             STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence            89999999999999999998765433221                                                   


Q ss_pred             -----ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccc
Q psy18018        180 -----QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       180 -----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~  252 (635)
                           +...+....+.+.+..+++++.||.|++||+.+++.+..+.+|...|.+++|+  ++.+++++.||.+++|++..
T Consensus       834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence                 11122233444567889999999999999999999999999999999999995  78999999999999999775


Q ss_pred             eeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhh
Q psy18018        253 RILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEA  332 (635)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (635)
                      ........        ...                      .....+.+....+.................         
T Consensus       914 ~~~~~~~~--------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  954 (1249)
T 3sfz_A          914 VCKNSAIV--------LKQ----------------------EIDVVFQENETMVLAVDNIRGLQLIAGKTG---------  954 (1249)
T ss_dssp             HHSCCSSS--------EEE----------------------EEEEEEETTEEEEEEEESSSSEEEEEESSC---------
T ss_pred             cceeeeec--------ccc----------------------eeeEEEcCCCcEEEEecCCcceEEEecCcc---------
Confidence            32211000        000                      000001111110000000000000000000         


Q ss_pred             hhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEc
Q psy18018        333 ATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI  410 (635)
Q Consensus       333 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~  410 (635)
                        ............++++|+++++++|+.+|.|++|++.+++....+.+|...|.+++|+  ++++++++.||.|++||+
T Consensus       955 --~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          955 --QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             --CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             --eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence              0001122345678899999999999999999999999999999999999999999997  679999999999999999


Q ss_pred             cCCccee--------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEE
Q psy18018        411 VSGTKKL--------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKV  480 (635)
Q Consensus       411 ~~~~~~~--------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~i  480 (635)
                      .+++...        ....+++ +..+++++.|+.+++||+.+++....+.+|...|.++++  +++++++++.|+.|++
T Consensus      1033 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A         1033 QTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp             TTTEEECCBCCSSCEEEEEECS-SSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCE
T ss_pred             CCCceEEEecCCCcEEEEEEcC-CCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            8865432        2223445 556889999999999999999999999999999998887  4669999999999999


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      ||+.+++++..+.+   |...|++++|  ++++|++++.||.|++||+.+++....+.....  ......|...|++++|
T Consensus      1112 wd~~~~~~~~~l~~---h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A         1112 WSFDLLSPLHELKG---HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp             ECSSSSSCSBCCCC---CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEE
T ss_pred             EECCCcceeeeecc---CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEEEEEE
Confidence            99999998888877   8899999999  689999999999999999999987665422110  1112347889999999


Q ss_pred             cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        559 QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       559 s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +||+++|++++  |.|++||+.+++.+..+     ..+...|++++|+|||++|++++.||.    ++.|++
T Consensus      1187 s~dg~~l~s~~--g~v~vwd~~~g~~~~~~-----~~~~~~i~~~~~s~dg~~l~~~~~dg~----v~vw~l 1247 (1249)
T 3sfz_A         1187 SPDSKTLVSAG--GYLKWWNVATGDSSQTF-----YTNGTNLKKIHVSPDFRTYVTVDNLGI----LYILQV 1247 (1249)
T ss_dssp             CTTSSCEEEES--SSEEEBCSSSCBCCCCC-----CCSSCCCCCCEECSSSCCEEEECTTCC----EEEECC
T ss_pred             CCCCCEEEECC--CeEEEEECCCCceeeee-----eccCCcccEEEECCCCCEEEEecCCcE----EEEEee
Confidence            99999999986  89999999999998877     567889999999999999999999998    666654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-57  Score=470.55  Aligned_cols=457  Identities=32%  Similarity=0.515  Sum_probs=384.5

Q ss_pred             eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEE
Q psy18018          6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVIT   85 (635)
Q Consensus         6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~   85 (635)
                      .++.|+ ...+.++.|.||.+.| ++|+||    |||++||+++.++        .+.+||. +++++..+.+|.+.| .
T Consensus        39 ~v~iWd-~~~~~~~~l~gh~~~V-~~l~fs----pdg~~las~~~d~--------~i~vWd~-~~~~~~~~~~~~~~v-~  102 (577)
T 2ymu_A           39 TVKLWN-RNGQLLQTLTGHSSSV-WGVAFS----PDGQTIASASDDK--------TVKLWNR-NGQLLQTLTGHSSSV-R  102 (577)
T ss_dssp             EEEEEC-TTSCEEEEEECCSSCE-EEEEEC----TTSSEEEEEETTS--------CEEEEET-TSCEEEEECCCSSCE-E
T ss_pred             EEEEEE-CCCCEEEEEeCCCCCE-EEEEEC----CCCCEEEEEeCCC--------EEEEEEC-CCCEEEEEECCCCCE-E
Confidence            467788 4566678999999999 999999    9999999988654        4456995 678889999999988 9


Q ss_pred             EEEEc--CCEEEEeeCCCcEEEEECCCCcEE-------------------------------------------------
Q psy18018         86 CLQFS--GSRIVSGSDDNTLKVWSATTGKCL-------------------------------------------------  114 (635)
Q Consensus        86 ~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l-------------------------------------------------  114 (635)
                      +++|+  +++|++++.|+.+++|+.......                                                 
T Consensus       103 ~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (577)
T 2ymu_A          103 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS  182 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSC
T ss_pred             EEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcc
Confidence            99999  999999999999999997543221                                                 


Q ss_pred             ------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc
Q psy18018        115 ------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ  180 (635)
Q Consensus       115 ------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  180 (635)
                                  +++++.|+.|++||. +++.+..+.+|...|.+++|  ++++|++++.|+.|++||.. ++.+..+..
T Consensus       183 v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~  260 (577)
T 2ymu_A          183 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG  260 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECC
T ss_pred             eeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEec
Confidence                        889999999999995 57888999999999999999  89999999999999999965 455555555


Q ss_pred             cce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeec
Q psy18018        181 ETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAI  257 (635)
Q Consensus       181 ~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~  257 (635)
                      +.. +....+.+++..+++++.|+.|++||. +++.+..+.+|...|++++++  ++.+++++.||.|++||........
T Consensus       261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~  339 (577)
T 2ymu_A          261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT  339 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE
Confidence            544 444445566789999999999999996 577888999999999999994  7899999999999999976532210


Q ss_pred             cccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcc
Q psy18018        258 GQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHR  337 (635)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (635)
                                                                                                     .
T Consensus       340 -------------------------------------------------------------------------------~  340 (577)
T 2ymu_A          340 -------------------------------------------------------------------------------L  340 (577)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------E
Confidence                                                                                           0


Q ss_pred             ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc
Q psy18018        338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      ..+......++++|+++++++++.+|.|++|+. +++.+..+.+|...|.+++|+  +++|++++.|+.|++||......
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~  419 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL  419 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE
Confidence            111233445779999999999999999999995 578888999999999999997  67999999999999999653211


Q ss_pred             --------eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCC
Q psy18018        416 --------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       416 --------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~  485 (635)
                              ......++|++++|++++.|+.|++||. +++.+..+.+|...|.++++  ++++|++++.|+.|++||. +
T Consensus       420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~  497 (577)
T 2ymu_A          420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  497 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-T
T ss_pred             EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-C
Confidence                    1122347899999999999999999996 57788899999999999988  4679999999999999995 6


Q ss_pred             CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      ++++..+.+   |...|++++|  ++++|++++.|+.|++||. +++.+..+..           |...|++++|+||++
T Consensus       498 ~~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~-----------h~~~v~~~~fs~dg~  562 (577)
T 2ymu_A          498 GQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-----------HSSSVWGVAFSPDGQ  562 (577)
T ss_dssp             SCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC-----------CSSCEEEEEECTTSS
T ss_pred             CCEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC-----------CCCCEEEEEEcCCCC
Confidence            788888887   8899999999  6899999999999999996 4665555543           789999999999999


Q ss_pred             EEEEecCCCeEEEEe
Q psy18018        564 FVITSSDDGTVKLWD  578 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd  578 (635)
                      +|++++.|++|++||
T Consensus       563 ~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          563 TIASASSDKTVKLWN  577 (577)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEeCCCEEEEeC
Confidence            999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.9e-58  Score=478.30  Aligned_cols=492  Identities=15%  Similarity=0.207  Sum_probs=383.3

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC----CCCceeeccCcc-eEEEEEEc----CCE
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI----KDPKVLKGHDDH-VITCLQFS----GSR   93 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~----~~~~~l~~h~~~-vi~~~~~s----~~~   93 (635)
                      .|.+.| ++++||    |+|++||++..         ..+.+||..++    +....+.+|.+. | ++++|+    +++
T Consensus        16 ~~~~~v-~~~~~s----pdg~~l~~~~~---------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~sp~~~~~~   80 (615)
T 1pgu_A           16 TQRNFT-THLSYD----PTTNAIAYPCG---------KSAFVRCLDDGDSKVPPVVQFTGHGSSVV-TTVKFSPIKGSQY   80 (615)
T ss_dssp             CCTTCC-CCCEEE----TTTTEEEEEET---------TEEEEEECCSSCCSSCSEEEECTTTTSCE-EEEEECSSTTCCE
T ss_pred             CccCce-eEEEEC----CCCCEEEEecC---------CeEEEEECCCCCCccccceEEecCCCceE-EEEEECcCCCCCE
Confidence            788888 999999    99999999872         24557999998    899999999998 7 999997    589


Q ss_pred             EEEeeCCCcEEEEECCCC--------cEE---------------------EEEeeCC----CcEEEEeCCCCeEEEEeeC
Q psy18018         94 IVSGSDDNTLKVWSATTG--------KCL---------------------LVSGSRD----ATLRVWHIESGECLHVLVG  140 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~--------~~l---------------------l~~~~~d----g~i~vwd~~~~~~~~~l~~  140 (635)
                      ||+++.||.|++||+.++        +.+                     +++++.+    +.|.+||  +++.+..+.+
T Consensus        81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~  158 (615)
T 1pgu_A           81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG  158 (615)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS
T ss_pred             EEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec
Confidence            999999999999999754        221                     6777766    6788887  6788999999


Q ss_pred             CCcceEEEEe--cCC-EEEEEeCCCeEEEEeCCCccceeeccccce----eEEeeeccC-CCEEEEEeCCCcEEEEECCC
Q psy18018        141 HLAAVRCVQY--DGK-LVVSGAYDYMVKIWNPDTEECLHAELQETE----VELSHGYAL-RSRIVSGSDDNTLKVWSATT  212 (635)
Q Consensus       141 h~~~v~~l~~--~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~  212 (635)
                      |...|.+++|  +++ .+++++.|+.|++||+.+++.+..+..+..    +......++ +.++++++.||.|++||+.+
T Consensus       159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  238 (615)
T 1pgu_A          159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  238 (615)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999  665 899999999999999999998888876655    444555566 68899999999999999999


Q ss_pred             CeEEEEE-e---CCCCCeEEEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        213 GKCLRTL-I---GHTGGVWSSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       213 ~~~~~~~-~---~h~~~v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      ++.+..+ .   +|...|.++.| +++++++++.||.|++||+.+..........                         
T Consensus       239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-------------------------  293 (615)
T 1pgu_A          239 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD-------------------------  293 (615)
T ss_dssp             CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC-------------------------
T ss_pred             CCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-------------------------
Confidence            9999999 6   89999999999 6889999999999999998764321100000                         


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                                                                       ..........+.+ +++.++++++.+|.|++
T Consensus       294 -------------------------------------------------~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~  323 (615)
T 1pgu_A          294 -------------------------------------------------KQQLGNQQVGVVA-TGNGRIISLSLDGTLNF  323 (615)
T ss_dssp             -------------------------------------------------TTCGGGCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             -------------------------------------------------CCcccCceeEEEe-CCCCeEEEEECCCCEEE
Confidence                                                             0000011112223 36677777777777777


Q ss_pred             EEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc---CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC-
Q psy18018        368 WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV---SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA-  443 (635)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~-  443 (635)
                      ||+.+++.+..+.+|...|.++++ ++ +++++.||.|++|++.   .........+..+++..+++++.|+.+++|++ 
T Consensus       324 ~d~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~  401 (615)
T 1pgu_A          324 YELGHDEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT  401 (615)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred             EECCCCcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcc
Confidence            777776777777777777777777 66 6666666666666654   11111111111134455555555555555554 


Q ss_pred             ---------------------------------CCCceeeeeccCCccEEEEEecCCEEEEEeC-CCcEEEEECCCCcee
Q psy18018        444 ---------------------------------ESGNLRHTLMGHQSLTSGMELRNNILVSGNA-DSTVKVWDIVSGQCL  489 (635)
Q Consensus       444 ---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~  489 (635)
                                                       .+++.+..+. |...+.+++++++++++++. |+.|++||+.+++..
T Consensus       402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~  480 (615)
T 1pgu_A          402 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS  480 (615)
T ss_dssp             EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred             cCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc
Confidence                                             4566666555 77889999999999999999 999999999987665


Q ss_pred             -EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC------
Q psy18018        490 -QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF------  560 (635)
Q Consensus       490 -~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------  560 (635)
                       ..+..   |...|++++|  ++++|++++.||.|++||+.+++.+..+..          .|...|++++|+|      
T Consensus       481 ~~~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------~h~~~v~~~~~sp~~~~~~  547 (615)
T 1pgu_A          481 FDLKTP---LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA----------FRTSKINAISWKPAEKGAN  547 (615)
T ss_dssp             EECSSC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC----------CCSSCEEEEEECCCC----
T ss_pred             ccccCC---ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec----------CCCCceeEEEEcCcccccc
Confidence             34443   8899999999  799999999999999999999987766543          1688999999999      


Q ss_pred             ----CCeEEEEecCCCeEEEEeCCCC-ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        561 ----NSRFVITSSDDGTVKLWDVKTG-EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       561 ----~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                          ++++|++++.||.|++||+.++ +.+..+     .+|...|++++|+||++ |++++.||.  +++|.++.
T Consensus       548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~-l~s~~~d~~--v~iw~~~~  614 (615)
T 1pgu_A          548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----NAHKDGVNNLLWETPST-LVSSGADAC--IKRWNVVL  614 (615)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----TSSTTCEEEEEEEETTE-EEEEETTSC--EEEEEEC-
T ss_pred             ccccCCCEEEEEcCCCcEEEEECCCCceechhh-----hcCccceEEEEEcCCCC-eEEecCCce--EEEEeeec
Confidence                9999999999999999999998 677777     57899999999999999 999999998  56665543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-52  Score=447.81  Aligned_cols=518  Identities=13%  Similarity=0.106  Sum_probs=372.3

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc-CCEEEEe
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS-GSRIVSG   97 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s-~~~l~s~   97 (635)
                      ....||.+.| +|++|+    |+|++||+|+.++        .+.+||....+....+ .|...| .+++|+ +++|+++
T Consensus        11 ~~~~gh~~~V-~~lafs----pdg~~lAsgs~Dg--------~I~lw~~~~~~~~~~~-~~~~~V-~~l~fspg~~L~S~   75 (902)
T 2oaj_A           11 TNKYGMSSKP-IAAAFD----FTQNLLAIATVTG--------EVHIYGQQQVEVVIKL-EDRSAI-KEMRFVKGIYLVVI   75 (902)
T ss_dssp             EEEEECSSCE-EEEEEE----TTTTEEEEEETTS--------EEEEECSTTCEEEEEC-SSCCCE-EEEEEETTTEEEEE
T ss_pred             ccccCCCCCc-EEEEEC----CCCCEEEEEeCCC--------EEEEEeCCCcEEEEEc-CCCCCE-EEEEEcCCCEEEEE
Confidence            3456999999 999999    9999999998754        4446998877665444 466777 999999 8899999


Q ss_pred             eCCCcEEEEECCCCcEE--------------------EEEeeCCCcEEEEeCCCCeEE-----------EEeeCCCcceE
Q psy18018         98 SDDNTLKVWSATTGKCL--------------------LVSGSRDATLRVWHIESGECL-----------HVLVGHLAAVR  146 (635)
Q Consensus        98 ~~d~~v~vWd~~~~~~l--------------------l~~~~~dg~i~vwd~~~~~~~-----------~~l~~h~~~v~  146 (635)
                      +.|++|++||+.+++.+                    +++|+.||.|++||+++++..           ..+.+|.++|+
T Consensus        76 s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           76 NAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             ETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             ECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence            99999999999988764                    899999999999999988764           23468999999


Q ss_pred             EEEe---cCCEEEEEeCCCeEEEEeCCCccceeecccc-------------------ceeEEeeeccCCCEEEEEeCCCc
Q psy18018        147 CVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQE-------------------TEVELSHGYALRSRIVSGSDDNT  204 (635)
Q Consensus       147 ~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~dg~  204 (635)
                      +++|   ++..|++++.||.| +||+.+++.+..+..+                   ..+....+.+++.+|++++.||.
T Consensus       156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence            9999   34689999999999 9999999877666543                   33555556667889999999999


Q ss_pred             EEEEECCCCeEEEE--E---eC-------------CCCCeEEEEee----C---CEEEEeeCc-----eeEEEeccccee
Q psy18018        205 LKVWSATTGKCLRT--L---IG-------------HTGGVWSSQMA----G---NIIISGSTD-----RTLKGWSNAERI  254 (635)
Q Consensus       205 i~vwd~~~~~~~~~--~---~~-------------h~~~v~~~~~~----~---~~l~s~~~d-----g~i~~w~~~~~~  254 (635)
                      |++||+.+++++..  +   .+             |..+|.+++|.    +   ..+++++.|     +.+.+|++....
T Consensus       235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~  314 (902)
T 2oaj_A          235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP  314 (902)
T ss_dssp             EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence            99999999988764  2   12             34579999993    2   467777665     378888743210


Q ss_pred             eeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhh
Q psy18018        255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT  334 (635)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (635)
                      ..     ...                                    ....+...-....                  ...
T Consensus       315 ~~-----~~~------------------------------------s~~~~~~~~~~~~------------------~~~  335 (902)
T 2oaj_A          315 RY-----SIT------------------------------------SYEGMKNYYANPK------------------QMK  335 (902)
T ss_dssp             CG-----GGC------------------------------------CHHHHHHHHHSCS------------------EEE
T ss_pred             Cc-----ccc------------------------------------chhhhhhhhcCcc------------------ceE
Confidence            00     000                                    0000000000000                  000


Q ss_pred             hccccccCCCceEEEE----------ecCcEEEEecCCCeEEEEEccCCceEEe-------eeCCCcceeEE--------
Q psy18018        335 LHRNKKTHVPDLFGFQ----------FDGVHVVSGSLDTSIRVWEAESGNLRHT-------LMGHQSLTSGM--------  389 (635)
Q Consensus       335 ~~~~~~~~~~~~~~~s----------~~~~~l~~~~~dg~i~v~~~~~~~~~~~-------~~~~~~~v~~l--------  389 (635)
                      ............+.+.          .+...+++++.||.|++|++.++.....       +..|...|+++        
T Consensus       336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~  415 (902)
T 2oaj_A          336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK  415 (902)
T ss_dssp             EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred             EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence            0000000011111111          1345788888999999999877654322       22333444444        


Q ss_pred             --------------------------EEe--CCEEEEEeCCCcEEEEEccCCcc--------------------eeEEEE
Q psy18018        390 --------------------------ELR--NNILVSGNADSTVKVWDIVSGTK--------------------KLMFRI  421 (635)
Q Consensus       390 --------------------------~~~--~~~l~s~~~dg~i~iwd~~~~~~--------------------~~~~~~  421 (635)
                                                +|+  ++.|++++.|++|++||+.++..                    ......
T Consensus       416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva  495 (902)
T 2oaj_A          416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS  495 (902)
T ss_dssp             HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred             HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE
Confidence                                      333  56999999999999999876532                    123445


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCc---------------------------------------------eeeeeccCC
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGN---------------------------------------------LRHTLMGHQ  456 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~---------------------------------------------~~~~~~~~~  456 (635)
                      ++|++++|++|+.|++|++|++.+++                                             ++..+.+|.
T Consensus       496 fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~  575 (902)
T 2oaj_A          496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK  575 (902)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred             ecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC
Confidence            89999999999999999999998662                                             366788899


Q ss_pred             ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeE--EecCCC-cccccEEEEEec----------CCEEEEEeCCCcE
Q psy18018        457 SLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQ--TLSGRN-KHQSAVTCLQFN----------SRFVITSSDDGTV  521 (635)
Q Consensus       457 ~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~~----------~~~l~~~~~d~~i  521 (635)
                      +.|+++++  ++ +||+|+.|++|++||+++...+.  .+.... .|...|++++|+          +++|++|+.|++|
T Consensus       576 ~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv  654 (902)
T 2oaj_A          576 GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV  654 (902)
T ss_dssp             CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred             CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence            99999998  46 99999999999999998877654  222222 488999999997          4699999999999


Q ss_pred             EEEEC---CCCceeeeeccceecCceeEEeccCceeccc-c----------------------cCCCeEEEEecCCCeEE
Q psy18018        522 KLWDV---KTGEFSTPLMSSFILNPFYFLIYSQPLLCPH-L----------------------QFNSRFVITSSDDGTVK  575 (635)
Q Consensus       522 ~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~----------------------s~~~~~l~~~~~d~~v~  575 (635)
                      ++||+   .+|+....+..+...      .|..+|.+++ |                      .+++.+|+++  +..|+
T Consensus       655 ~~wd~~p~~~g~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir  726 (902)
T 2oaj_A          655 ITYKILPASGGKFDVQLMDITNV------TSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIR  726 (902)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEC------CSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEE
T ss_pred             EEEEEecCCCCcEEEEecCceec------CCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceE
Confidence            99999   788877776654321      1123333332 2                      2667776665  77899


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEE---E------eCCCCeEEEEccCCCeeEeEEEE
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRI---R------ASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l---~------~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      ||++.++++++..     ..+.-.+.++   .      |++++..|++++.||.  +++|.
T Consensus       727 ~~~~~~~k~~~k~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~--i~~~s  780 (902)
T 2oaj_A          727 LITLGKSKSTHKG-----FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGH--LRVFT  780 (902)
T ss_dssp             EECTTCCCEEEEE-----CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSE--EEEEE
T ss_pred             EEeCccccceeeE-----cccceeeeEEEEEEeccccccccCceEEEEEeCCCc--EEEEE
Confidence            9999999988776     2444666776   6      8899999999999999  55654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-51  Score=429.01  Aligned_cols=493  Identities=15%  Similarity=0.169  Sum_probs=382.0

Q ss_pred             eeeeecCCC----CCCccccccccc-eEEEEEecCCCCC--CCceeecCCcchheeeccceeeeeeecCCC--------C
Q psy18018          7 EINWRTRPI----KDPKVLKGHDDH-VITCLQFSGKSFP--CESFIRSSSPWKALFMSHRSVEINWRTRPI--------K   71 (635)
Q Consensus         7 ~~~~~~~~~----~~~~~l~gh~~~-vi~~~~~s~~~~~--~~~~la~~~~~~~~~~~~~~~~~iwd~~~~--------~   71 (635)
                      ++.|+....    +..+.|.||.+. | ++++|+    |  +|++||+++.++        .+.+||..++        +
T Consensus        41 v~v~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~s----p~~~~~~l~s~~~dg--------~v~vw~~~~~~~~~~~~~~  107 (615)
T 1pgu_A           41 AFVRCLDDGDSKVPPVVQFTGHGSSVV-TTVKFS----PIKGSQYLCSGDESG--------KVIVWGWTFDKESNSVEVN  107 (615)
T ss_dssp             EEEEECCSSCCSSCSEEEECTTTTSCE-EEEEEC----SSTTCCEEEEEETTS--------EEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEECCCCCCccccceEEecCCCceE-EEEEEC----cCCCCCEEEEecCCC--------EEEEEeCCCCccccccccc
Confidence            456776666    778899999999 8 999999    8  999999998654        4456999754        6


Q ss_pred             CCceeeccCcceEEEEEEc--CCEEEEeeCC----CcEEEEECCC--------------------CcEEEEEeeCCCcEE
Q psy18018         72 DPKVLKGHDDHVITCLQFS--GSRIVSGSDD----NTLKVWSATT--------------------GKCLLVSGSRDATLR  125 (635)
Q Consensus        72 ~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d----~~v~vWd~~~--------------------~~~ll~~~~~dg~i~  125 (635)
                      .+..+.+|...+ .+++|+  +++|++++.+    +.|.+||...                    ++.++++++.|+.|+
T Consensus       108 ~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~  186 (615)
T 1pgu_A          108 VKSEFQVLAGPI-SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV  186 (615)
T ss_dssp             EEEEEECCSSCE-EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred             ccchhhcccccE-EEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence            778889999988 999999  9999999988    6888888432                    112589999999999


Q ss_pred             EEeCCCCeEEEEeeCCCc---ceEEEEe--c-CCEEEEEeCCCeEEEEeCCCccceeec-c---ccc-eeEEeeeccCCC
Q psy18018        126 VWHIESGECLHVLVGHLA---AVRCVQY--D-GKLVVSGAYDYMVKIWNPDTEECLHAE-L---QET-EVELSHGYALRS  194 (635)
Q Consensus       126 vwd~~~~~~~~~l~~h~~---~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~~~~~~~-~---~~~-~~~~~~~~~~~~  194 (635)
                      +||+++++.+..+.+|..   .|.+++|  + +++|++++.||.|++||+.+++.+..+ .   .+. .+...... ++.
T Consensus       187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  265 (615)
T 1pgu_A          187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ  265 (615)
T ss_dssp             EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS
T ss_pred             EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC
Confidence            999999999999999999   9999999  6 899999999999999999999988887 3   443 44444444 788


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeCC----CCCeEEEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018        195 RIVSGSDDNTLKVWSATTGKCLRTLIGH----TGGVWSSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI  269 (635)
Q Consensus       195 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  269 (635)
                      .+++++.|+.|++||+.+++.+..+..+    ...+.++.+ +++.+++++.||.|++||+.+.....            
T Consensus       266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~------------  333 (615)
T 1pgu_A          266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK------------  333 (615)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE------------
Confidence            9999999999999999999999999877    467777777 69999999999999999987643211            


Q ss_pred             eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018        270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF  349 (635)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (635)
                                      ........+..+.+ ++   +..+.......       +|+..     .+. ..+......+++
T Consensus       334 ----------------~~~~~~~~v~~~~~-~~---l~~~~~dg~i~-------~w~~~-----~~~-~~~~~~v~~~~~  380 (615)
T 1pgu_A          334 ----------------TISGHNKGITALTV-NP---LISGSYDGRIM-------EWSSS-----SMH-QDHSNLIVSLDN  380 (615)
T ss_dssp             ----------------EECCCSSCEEEEET-TT---TEEEETTSCEE-------ETTTT-----EEE-CCCCSCEEEEEC
T ss_pred             ----------------EEeCCCCCEEEEEe-cC---cEEECCCCeEE-------EEEch-----hhc-CcccCceEEEEE
Confidence                            11122334455555 44   22222222111       22222     111 222333444555


Q ss_pred             EecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEE------E
Q psy18018        350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRI------C  422 (635)
Q Consensus       350 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~  422 (635)
                       +++..+++++.|+.|++|++.+++...       .+.+++++ ...++..+.++.+.+|+..+++.......      .
T Consensus       381 -~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (615)
T 1pgu_A          381 -SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV  452 (615)
T ss_dssp             -CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             -CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence             557788888888999998877654432       56677776 23344444888888998876655443321      1


Q ss_pred             eeCCcEEEEEeC-CCcEEEEeCCCCcee-eeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        423 LFDGVHVVSGSL-DTSIRVWEAESGNLR-HTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       423 ~~~~~~l~~~~~-d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                      ...++++++++. |+.|++||+.+++.. ..+.+|...|.++++  ++++|++++.||.|++||+.+++.+..+..  .|
T Consensus       453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h  530 (615)
T 1pgu_A          453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--FR  530 (615)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--CC
T ss_pred             EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CC
Confidence            122889999999 999999999988766 777889999999998  567999999999999999999998877653  27


Q ss_pred             cccEEEEEe------------cCCEEEEEeCCCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        499 QSAVTCLQF------------NSRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       499 ~~~v~~~~~------------~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      ...|++++|            ++++|++++.||.|++||++++ +.+..+..           |...|++++|+|+++ |
T Consensus       531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------h~~~v~~l~~s~~~~-l  598 (615)
T 1pgu_A          531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-----------HKDGVNNLLWETPST-L  598 (615)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-----------STTCEEEEEEEETTE-E
T ss_pred             CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc-----------CccceEEEEEcCCCC-e
Confidence            788999999            6789999999999999999987 55555443           688999999999999 9


Q ss_pred             EEecCCCeEEEEeCCC
Q psy18018        566 ITSSDDGTVKLWDVKT  581 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~  581 (635)
                      ++++.||.|++||+++
T Consensus       599 ~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          599 VSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEETTSCEEEEEEC-
T ss_pred             EEecCCceEEEEeeec
Confidence            9999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-51  Score=463.25  Aligned_cols=490  Identities=22%  Similarity=0.306  Sum_probs=390.0

Q ss_pred             CceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         73 PKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      ...+.+|.+.| ++++|+  +++||+|+.||+|++||+.+                     ++.+..+.+|.+.|.+++|
T Consensus       608 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~vw~~~~---------------------~~~~~~~~~h~~~v~~~~~  665 (1249)
T 3sfz_A          608 RLVVRPHTDAV-YHACFSQDGQRIASCGADKTLQVFKAET---------------------GEKLLDIKAHEDEVLCCAF  665 (1249)
T ss_dssp             SEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEE
T ss_pred             eEEEecccccE-EEEEECCCCCEEEEEeCCCeEEEEECCC---------------------CCEEEEeccCCCCEEEEEE
Confidence            34677999988 999999  99999999999888888764                     4567788899999999999


Q ss_pred             --cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccC---CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL---RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                        ++++|++++.||+|++||+.+++.+..+..+...+....+.+   ...+++++.|+.|++||+.+++++..+.+|.+.
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~  745 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS  745 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred             ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence              899999999999999999999999988877766666555544   357899999999999999999999999999999


Q ss_pred             eEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018        226 VWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE  303 (635)
Q Consensus       226 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (635)
                      |.+++|+  ++.+++++.||.|++||+.+...............               ...........+..+.+++++
T Consensus       746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~s~dg  810 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS---------------SEDPPEDVEVIVKCCSWSADG  810 (1249)
T ss_dssp             EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----------------------CCCCCBCCCCBCTTS
T ss_pred             EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccc---------------cCCccccccceEEEEEECCCC
Confidence            9999994  78999999999999999887543221110000000               000000111123334455555


Q ss_pred             hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018        304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  383 (635)
                      ..+..+......        +|..............+......++|+|++.++++++.+|.|++|++.++..+..+.+|.
T Consensus       811 ~~l~~~~~~~v~--------~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  882 (1249)
T 3sfz_A          811 DKIIVAAKNKVL--------LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL  882 (1249)
T ss_dssp             SEEEEEETTEEE--------EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred             CEEEEEcCCcEE--------EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence            544443322111        111111111111122344566778999999999999999999999999999999999999


Q ss_pred             cceeEEEEe--CCEEEEEeCCCcEEEEEccCCc----------------------------------------------c
Q psy18018        384 SLTSGMELR--NNILVSGNADSTVKVWDIVSGT----------------------------------------------K  415 (635)
Q Consensus       384 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~----------------------------------------------~  415 (635)
                      ..|.+++|+  +..+++++.|+.+++|++.+..                                              .
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA  962 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence            999999997  6699999999999999975320                                              1


Q ss_pred             eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEec
Q psy18018        416 KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  493 (635)
                      ......++|+++++++|+.+|.|++||+.+++....+.+|...|.++.+  +++++++++.||.|++||+.+++..... 
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~- 1041 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ- 1041 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-
T ss_pred             cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe-
Confidence            1223357889999999999999999999999999999999999999888  4669999999999999999998766433 


Q ss_pred             CCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC
Q psy18018        494 GRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG  572 (635)
Q Consensus       494 ~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  572 (635)
                      .   |...+.++++ .+..+++++.|+.|++||+.+++....+..           |...|++++|+||++++++++.|+
T Consensus      1042 ~---~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A         1042 A---HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC-----------HQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp             C---CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC-----------CSSCCCCEEECSSSSSCEEECCSS
T ss_pred             c---CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc-----------cCCcEEEEEECCCCCEEEEEcCCC
Confidence            3   8889999999 467889999999999999999987766544           688999999999999999999999


Q ss_pred             eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +|++||+.+++.+..+     .+|.+.|++++|+|||++|++++.||.    |.+||++
T Consensus      1108 ~v~iwd~~~~~~~~~l-----~~h~~~v~~~~~s~dg~~lat~~~dg~----i~vwd~~ 1157 (1249)
T 3sfz_A         1108 TAKIWSFDLLSPLHEL-----KGHNGCVRCSAFSLDGILLATGDDNGE----IRIWNVS 1157 (1249)
T ss_dssp             CCCEECSSSSSCSBCC-----CCCSSCEEEEEECSSSSEEEEEETTSC----CCEEESS
T ss_pred             cEEEEECCCcceeeee-----ccCCCcEEEEEECCCCCEEEEEeCCCE----EEEEECC
Confidence            9999999999988777     578999999999999999999999998    4444544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-48  Score=415.65  Aligned_cols=470  Identities=13%  Similarity=0.120  Sum_probs=334.5

Q ss_pred             eeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cC
Q psy18018         76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DG  152 (635)
Q Consensus        76 l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~  152 (635)
                      ..||.+.| +|++|+  +++||+|+.||+|+|||..++                     +....+ .|..+|.+++| .+
T Consensus        13 ~~gh~~~V-~~lafspdg~~lAsgs~Dg~I~lw~~~~~---------------------~~~~~~-~~~~~V~~l~fspg   69 (902)
T 2oaj_A           13 KYGMSSKP-IAAAFDFTQNLLAIATVTGEVHIYGQQQV---------------------EVVIKL-EDRSAIKEMRFVKG   69 (902)
T ss_dssp             EEECSSCE-EEEEEETTTTEEEEEETTSEEEEECSTTC---------------------EEEEEC-SSCCCEEEEEEETT
T ss_pred             ccCCCCCc-EEEEECCCCCEEEEEeCCCEEEEEeCCCc---------------------EEEEEc-CCCCCEEEEEEcCC
Confidence            35898888 999999  999999999999999987643                     333333 57889999999 67


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE-----------EEEeC
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL-----------RTLIG  221 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~  221 (635)
                      ++|++++.|++|++||+.+++.+..+..+..+....+.+.+.++++|+.||.|++||+.++++.           ..+.+
T Consensus        70 ~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~  149 (902)
T 2oaj_A           70 IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA  149 (902)
T ss_dssp             TEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred             CEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence            7899999999999999999998887766666666677778899999999999999999988764           23467


Q ss_pred             CCCCeEEEEeeC---CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018        222 HTGGVWSSQMAG---NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT  298 (635)
Q Consensus       222 h~~~v~~~~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (635)
                      |.++|.+++|++   ..+++++.||.| +||+.+.......... ..+            .                   
T Consensus       150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~-~~~------------g-------------------  196 (902)
T 2oaj_A          150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE-LPP------------F-------------------  196 (902)
T ss_dssp             CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC-BCT------------T-------------------
T ss_pred             CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc-cCC------------c-------------------
Confidence            999999999964   589999999999 9998775432100000 000            0                   


Q ss_pred             ecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEe
Q psy18018        299 FLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT  378 (635)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~  378 (635)
                       .+..                 ..         .. .....+......++|+|+|.+|++|+.||.|++||+.+++++..
T Consensus       197 -~~~~-----------------~~---------~~-~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          197 -APGG-----------------DF---------SE-KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             -CCCS-----------------TT---------CC-CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             -CCCc-----------------cc---------cc-ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence             0000                 00         00 00011223456688999999999999999999999999887653


Q ss_pred             --e---eC-------------CCcceeEEEEe----C---CEEEEEeCC-----CcEEEEEccC----------------
Q psy18018        379 --L---MG-------------HQSLTSGMELR----N---NILVSGNAD-----STVKVWDIVS----------------  412 (635)
Q Consensus       379 --~---~~-------------~~~~v~~l~~~----~---~~l~s~~~d-----g~i~iwd~~~----------------  412 (635)
                        +   ..             |...|.+++|.    +   .++++++.+     ..+.+|++..                
T Consensus       249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~  328 (902)
T 2oaj_A          249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY  328 (902)
T ss_dssp             ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred             EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence              2   12             34579999994    2   367777665     3788988521                


Q ss_pred             --CcceeEE---------E-EEe----------eCCcEEEEEeCCCcEEEEeCCCCceeee-------eccCCccEEEEE
Q psy18018        413 --GTKKLMF---------R-ICL----------FDGVHVVSGSLDTSIRVWEAESGNLRHT-------LMGHQSLTSGME  463 (635)
Q Consensus       413 --~~~~~~~---------~-~~~----------~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~~~~~v~~~~  463 (635)
                        ++.....         . .+.          .++..+++++.|+.+++|++.++.....       +..|...|+++.
T Consensus       329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~  408 (902)
T 2oaj_A          329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSM  408 (902)
T ss_dssp             HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEE
T ss_pred             cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEE
Confidence              1111111         1 111          2445889999999999999987754322       233444444433


Q ss_pred             e------------------------------------cCCEEEEEeCCCcEEEEECCCCceeE--EecC------CCccc
Q psy18018        464 L------------------------------------RNNILVSGNADSTVKVWDIVSGQCLQ--TLSG------RNKHQ  499 (635)
Q Consensus       464 ~------------------------------------~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~~  499 (635)
                      +                                    ++++|++|+.|++|++||+.++....  .+..      ...|.
T Consensus       409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~  488 (902)
T 2oaj_A          409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE  488 (902)
T ss_dssp             EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred             EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence            2                                    45699999999999999998874211  1110      01378


Q ss_pred             ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee-----------------ecc----------c------eecC-c
Q psy18018        500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP-----------------LMS----------S------FILN-P  543 (635)
Q Consensus       500 ~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~-----------------~~~----------~------~~~~-~  543 (635)
                      ..|.+++|  ++++||+|+.||+|+|||+.+++....                 +..          .      .... .
T Consensus       489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  568 (902)
T 2oaj_A          489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS  568 (902)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred             CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence            89999999  699999999999999999987642110                 000          0      0000 1


Q ss_pred             eeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCC-CCCceEEEEEeC-----CCC---eEEEE
Q psy18018        544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG-GSGGVVWRIRAS-----ETK---LVCAV  614 (635)
Q Consensus       544 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~i~~l~~s-----~d~---~~l~~  614 (635)
                      .....|...|++++||||| +||+|+.|++|+|||++++..+......... +|.+.|++|+|+     |||   ++|++
T Consensus       569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s  647 (902)
T 2oaj_A          569 TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC  647 (902)
T ss_dssp             EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred             EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence            2233489999999999999 9999999999999999888776431111112 788999999999     885   89999


Q ss_pred             ccCCCeeEeEEEEEeeec
Q psy18018        615 GSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       615 ~~~dg~~~~~l~~~d~~~  632 (635)
                      |+.|++  +++|.++++.
T Consensus       648 gs~D~t--v~~wd~~p~~  663 (902)
T 2oaj_A          648 GTDMGE--VITYKILPAS  663 (902)
T ss_dssp             EETTSE--EEEEEEEECG
T ss_pred             EecCCc--EEEEEEecCC
Confidence            999999  6777665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7e-45  Score=391.47  Aligned_cols=449  Identities=17%  Similarity=0.197  Sum_probs=355.2

Q ss_pred             CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018         15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      +..++.|.||.+.| +|++||    |+|++||+++.+        ..+.+||..+++.+..+.+|.+.+ ++++|+  ++
T Consensus         3 l~~~~~~~~h~~~v-~~i~~s----p~~~~la~~~~~--------g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~   68 (814)
T 3mkq_A            3 LDIKKTFSNRSDRV-KGIDFH----PTEPWVLTTLYS--------GRVEIWNYETQVEVRSIQVTETPV-RAGKFIARKN   68 (814)
T ss_dssp             CCCEEEEEEECSCE-EEEEEC----SSSSEEEEEETT--------SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGT
T ss_pred             cccceeeecCCCce-EEEEEC----CCCCEEEEEeCC--------CEEEEEECCCCceEEEEecCCCcE-EEEEEeCCCC
Confidence            34567899999999 999999    999999999754        445579999999999999999988 999999  99


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD  170 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~  170 (635)
                      +||+++.||.|++||+.+                     ++.+..+.+|.+.|++++|  ++++|++++.||+|++||+.
T Consensus        69 ~l~~~~~dg~i~vw~~~~---------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~  127 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNT---------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (814)
T ss_dssp             EEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred             EEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence            999999999888888764                     4566778899999999999  89999999999999999999


Q ss_pred             Cc-cceeeccccceeEEeeecc--CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-CCeEEEEe----eCCEEEEeeCc
Q psy18018        171 TE-ECLHAELQETEVELSHGYA--LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT-GGVWSSQM----AGNIIISGSTD  242 (635)
Q Consensus       171 ~~-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~----~~~~l~s~~~d  242 (635)
                      ++ .....+..+........+.  ++..+++++.||.|++||+.+++....+..+. ..+..++|    ++..+++++.|
T Consensus       128 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence            87 4455555555544544454  46799999999999999999888888777655 88999988    57899999999


Q ss_pred             eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCC
Q psy18018        243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN  322 (635)
Q Consensus       243 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (635)
                      |.|++||+.+......                                                                
T Consensus       208 g~i~~~d~~~~~~~~~----------------------------------------------------------------  223 (814)
T 3mkq_A          208 LTIKIWDYQTKSCVAT----------------------------------------------------------------  223 (814)
T ss_dssp             SEEEEEETTTTEEEEE----------------------------------------------------------------
T ss_pred             CEEEEEECCCCcEEEE----------------------------------------------------------------
Confidence            9999999865432100                                                                


Q ss_pred             cchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC---EEEEE
Q psy18018        323 LLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---ILVSG  399 (635)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~s~  399 (635)
                                    ...+......++++|++.++++++.||.|++||+.+++.+..+..|...+.+++++++   .++++
T Consensus       224 --------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  289 (814)
T 3mkq_A          224 --------------LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS  289 (814)
T ss_dssp             --------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEE
T ss_pred             --------------EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEE
Confidence                          0011233456779999999999999999999999999999999999999999999843   24556


Q ss_pred             eCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCc---EEE------EeCCCCce----eeeeccCCccEEEEEe--
Q psy18018        400 NADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTS---IRV------WEAESGNL----RHTLMGHQSLTSGMEL--  464 (635)
Q Consensus       400 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~---i~~------~d~~~~~~----~~~~~~~~~~v~~~~~--  464 (635)
                      +.++.+.+|++......   ..++|++..+++++.+..   +..      |++..+..    ...+..+...+.++++  
T Consensus       290 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  366 (814)
T 3mkq_A          290 GFDNGFTVLSLGNDEPT---LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP  366 (814)
T ss_dssp             EETTEEEEEECSCCSCC---EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred             EeCCCEEEEEcCCCCce---eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence            66778999998776543   345788888888766542   111      22333322    2334456666777776  


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018        465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                      +++++++++ |+.+.+|++......        +...+.+++|  +++++++++.+|.|++|+.-.              
T Consensus       367 dg~~la~~~-~~~~~i~~~~~~~~~--------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~--------------  423 (814)
T 3mkq_A          367 NGRFVTVVG-DGEYVIYTALAWRNK--------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK--------------  423 (814)
T ss_dssp             TSSEEEEEE-TTEEEEEETTTTEEE--------EEEECSEEEECTTSSCEEEECTTCCEEEEETTE--------------
T ss_pred             CCCEEEEec-CCEEEEEECcccccc--------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC--------------
Confidence            566888888 899999998654322        2345667888  689999999999999996321              


Q ss_pred             ceeEEeccCceecccccCCC---eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        543 PFYFLIYSQPLLCPHLQFNS---RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                           .|...+.+++|+||+   ++|++++.|+.|++||+.+++.+..+.     .+..   .++|+|||++|+++
T Consensus       424 -----~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----~~~~---~v~~s~dg~~la~~  486 (814)
T 3mkq_A          424 -----EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-----VNAK---DVIWSDNGELVMIV  486 (814)
T ss_dssp             -----ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-----SCEE---EEEECTTSSEEEEE
T ss_pred             -----CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe-----cCCC---EEEEcCCCCEEEEE
Confidence                 256778999999999   688999999999999999999998883     3433   89999999999999

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-42  Score=344.13  Aligned_cols=340  Identities=53%  Similarity=0.822  Sum_probs=259.7

Q ss_pred             eeeeecCCCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCC
Q psy18018         62 EINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH  141 (635)
Q Consensus        62 ~~iwd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h  141 (635)
                      ..-|.....+..+.+.+|.+.++.|+++++++|++|+.||+|++||+.+                     ++.+..+.+|
T Consensus       100 ~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~---------------------~~~~~~~~~h  158 (445)
T 2ovr_B          100 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT---------------------GKCLRTLVGH  158 (445)
T ss_dssp             HHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------CCEEEECCCC
T ss_pred             hhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC---------------------CcEEEEEcCC
Confidence            3347777777788999999998899999999999999999988888764                     4566788899


Q ss_pred             CcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018        142 LAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG  221 (635)
Q Consensus       142 ~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  221 (635)
                      .++|.+++|+++.+++++.||+|++||+.+++.+..                                         +.+
T Consensus       159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------------------------------------~~~  197 (445)
T 2ovr_B          159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT-----------------------------------------LYG  197 (445)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------ECC
T ss_pred             CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEE-----------------------------------------ECC
Confidence            999999999888888888888888887766554444                                         444


Q ss_pred             CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        222 HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       222 h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      |...|.++.++++.+++++.||.|++||+.+.....                                            
T Consensus       198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--------------------------------------------  233 (445)
T 2ovr_B          198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH--------------------------------------------  233 (445)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE--------------------------------------------
T ss_pred             CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE--------------------------------------------
Confidence            555555555555555555555555555543321100                                            


Q ss_pred             chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC
Q psy18018        302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  381 (635)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  381 (635)
                                                          ....+...+.++..++.++++|+.||.|++||+.+++.+..+.+
T Consensus       234 ------------------------------------~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  277 (445)
T 2ovr_B          234 ------------------------------------VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG  277 (445)
T ss_dssp             ------------------------------------EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred             ------------------------------------EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence                                                00011222223334566677777777788888777788888888


Q ss_pred             CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEE
Q psy18018        382 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  461 (635)
Q Consensus       382 ~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  461 (635)
                      |...+.++.+++..                                 +++++.|+.|++||+.+++.+..+.+|...+.+
T Consensus       278 ~~~~v~~~~~~~~~---------------------------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~  324 (445)
T 2ovr_B          278 HTNRVYSLQFDGIH---------------------------------VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  324 (445)
T ss_dssp             CSSCEEEEEECSSE---------------------------------EEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             CCCceEEEEECCCE---------------------------------EEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence            98888888875544                                 445555556666666677778888899999999


Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceec
Q psy18018        462 MELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       462 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      +.++++++++++.||.|++||+.+++.+..+.....|...|.+++++++++++++.||.|++||+.+++.+..+..... 
T Consensus       325 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-  403 (445)
T 2ovr_B          325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES-  403 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT-
T ss_pred             EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecccc-
Confidence            9999999999999999999999999999999877778899999999999999999999999999999988776632100 


Q ss_pred             CceeEEeccCceecccccCCCeEEEEecCCCe----EEEEeCCCC
Q psy18018        542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT----VKLWDVKTG  582 (635)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----v~iwd~~~~  582 (635)
                           ..+...|.+++|+|++.++++|+.||+    |.|||+...
T Consensus       404 -----~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          404 -----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             -----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             -----CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence                 126788999999999999999999998    999998753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.1e-42  Score=340.66  Aligned_cols=337  Identities=50%  Similarity=0.842  Sum_probs=278.9

Q ss_pred             CeEEEEeeCCCcc-eEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018        132 GECLHVLVGHLAA-VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       132 ~~~~~~l~~h~~~-v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  210 (635)
                      .+....+.+|.+. +.++.+++++|++++.||+|++||+.+                                       
T Consensus       108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~---------------------------------------  148 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT---------------------------------------  148 (445)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------------------------
T ss_pred             cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC---------------------------------------
Confidence            3456778899886 477777888888888888777776544                                       


Q ss_pred             CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                        ++.+..+.+|.+.|+++.++++.+++++.||+|++||+.++....                                 
T Consensus       149 --~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------------------------------  193 (445)
T 2ovr_B          149 --GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH---------------------------------  193 (445)
T ss_dssp             --CCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE---------------------------------
T ss_pred             --CcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEE---------------------------------
Confidence              445556678999999999999999999999999999987643210                                 


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA  370 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~  370 (635)
                                                                     ....+...+.++..++..+++|+.||.|++||+
T Consensus       194 -----------------------------------------------~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          194 -----------------------------------------------TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             -----------------------------------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             -----------------------------------------------EECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC
Confidence                                                           011234445566667889999999999999999


Q ss_pred             cCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018        371 ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH  450 (635)
Q Consensus       371 ~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  450 (635)
                      .+++.+..+.+|...+.+++++++.+++++                                 .|+.|++||+.+++.+.
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~  273 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGA---------------------------------YDFMVKVWDPETETCLH  273 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEECSSCEEEEE---------------------------------TTSCEEEEEGGGTEEEE
T ss_pred             CCCcEEEEEcCCcccEEEEEECCCEEEEEc---------------------------------CCCEEEEEECCCCcEeE
Confidence            999999999999999998887655555554                                 45555555666667778


Q ss_pred             eeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCc
Q psy18018        451 TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       451 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      .+.+|...+.++.++++++++++.|+.|++||+.+++.+..+..   |...+.++.++++++++++.||.|++||+++++
T Consensus       274 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~  350 (445)
T 2ovr_B          274 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ  350 (445)
T ss_dssp             EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred             EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcC---CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc
Confidence            88899999999999999999999999999999999999999887   888999999999999999999999999999998


Q ss_pred             eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018        531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL  610 (635)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  610 (635)
                      ....+....        .|...|++++|+  +++|++|+.||.|++||+.+++.+..+......++.+.|++++|+|++.
T Consensus       351 ~~~~~~~~~--------~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          351 CLQTLQGPN--------KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             EEEEECSTT--------SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             EEEEEccCC--------CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence            777665421        256789999885  6899999999999999999999998886555457889999999999999


Q ss_pred             EEEEccCCCeeEeEEEEEeeecCCC
Q psy18018        611 VCAVGSRNGTEETKLLVLDFDVDSK  635 (635)
Q Consensus       611 ~l~~~~~dg~~~~~l~~~d~~~~~~  635 (635)
                      +|++++.||+...++++|||+.+.|
T Consensus       421 ~la~~~~dg~~~~~l~v~df~~~~~  445 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLDFDVDMK  445 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEECCCCC-
T ss_pred             EEEEcccCCCCccEEEEEECCCCCC
Confidence            9999999998788999999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=312.52  Aligned_cols=227  Identities=22%  Similarity=0.375  Sum_probs=198.3

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      +++++..+++++.|+.|++||+.+++.+..+..|...+.+++|+                               |++++
T Consensus        88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s-------------------------------pdg~~  136 (321)
T 3ow8_A           88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------------------------------PDSQY  136 (321)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC-------------------------------TTSSE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC-------------------------------CCCCE
Confidence            45566677788888888888888888888887777777766664                               67778


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  506 (635)
                      |++++.++.+++|++++++....+..|...+.++++  ++++|++++.|+.|++||+.+++.+..+.+   |..+|.+++
T Consensus       137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~  213 (321)
T 3ow8_A          137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLT  213 (321)
T ss_dssp             EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEE
T ss_pred             EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEE
Confidence            888888888888998888888888889999999888  467999999999999999999999999887   888999999


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      |  ++++|++++.|+.|++||+++++....+..           |...|.+++|+|++++|++++.|++|++||+.++++
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-----------HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-----------CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence            9  689999999999999999999887666554           688999999999999999999999999999999999


Q ss_pred             EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      +..+     .+|.+.|++++|+|++++|++++.||.  +++|.
T Consensus       283 ~~~~-----~~h~~~v~~v~~s~~g~~l~s~~~d~~--i~vwd  318 (321)
T 3ow8_A          283 VHTF-----FDHQDQVWGVKYNGNGSKIVSVGDDQE--IHIYD  318 (321)
T ss_dssp             EEEE-----CCCSSCEEEEEECTTSSEEEEEETTCC--EEEEE
T ss_pred             EEEE-----cCCCCcEEEEEECCCCCEEEEEeCCCe--EEEEe
Confidence            9988     578999999999999999999999998  45553

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-40  Score=325.03  Aligned_cols=283  Identities=29%  Similarity=0.485  Sum_probs=246.9

Q ss_pred             EEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee-ccCCCEEEEEeCCCcEEEEECC
Q psy18018        135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG-YALRSRIVSGSDDNTLKVWSAT  211 (635)
Q Consensus       135 ~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~  211 (635)
                      ...+.+|.++|++++|  ++++|++++.||+|++||+.+++....+..+...+..+. .+.+.+|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            4567899999999999  889999999999999999999998888887765555444 4567899999999999999999


Q ss_pred             CCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccc
Q psy18018        212 TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE  291 (635)
Q Consensus       212 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (635)
                      +++++.++.+|...|.+++                                                             
T Consensus       181 ~~~~~~~~~~h~~~V~~v~-------------------------------------------------------------  199 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVS-------------------------------------------------------------  199 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEE-------------------------------------------------------------
T ss_pred             CCceeEEEcCCCCCEEEEE-------------------------------------------------------------
Confidence            9999999999998888776                                                             


Q ss_pred             eeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEcc
Q psy18018        292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE  371 (635)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~  371 (635)
                                                                               |+|++.++++|+.|+.|++||+.
T Consensus       200 ---------------------------------------------------------~~p~~~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          200 ---------------------------------------------------------IMPNGDHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             ---------------------------------------------------------ECSSSSEEEEEETTSEEEEEETT
T ss_pred             ---------------------------------------------------------EeCCCCEEEEEeCCCeEEEEECC
Confidence                                                                     66677788888888888889988


Q ss_pred             CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee
Q psy18018        372 SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT  451 (635)
Q Consensus       372 ~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  451 (635)
                      ++.++..+.+|...+.++.++                               +++.++++++.|+.|++||+.+++....
T Consensus       223 ~~~~~~~~~~h~~~v~~~~~~-------------------------------~~g~~l~s~s~D~~v~vwd~~~~~~~~~  271 (410)
T 1vyh_C          223 TGYCVKTFTGHREWVRMVRPN-------------------------------QDGTLIASCSNDQTVRVWVVATKECKAE  271 (410)
T ss_dssp             TCCEEEEEECCSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCcEEEEEeCCCccEEEEEEC-------------------------------CCCCEEEEEcCCCeEEEEECCCCceeeE
Confidence            888888899999888887765                               5666777888888888888888888888


Q ss_pred             eccCCccEEEEEec----------------------CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--
Q psy18018        452 LMGHQSLTSGMELR----------------------NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--  507 (635)
Q Consensus       452 ~~~~~~~v~~~~~~----------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--  507 (635)
                      +.+|...|.++.+.                      +.++++|+.|+.|++||+.+++++..+.+   |...|.+++|  
T Consensus       272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~  348 (410)
T 1vyh_C          272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHS  348 (410)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECS
T ss_pred             ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC---CCCcEEEEEEcC
Confidence            89999999999885                      45899999999999999999999999987   8899999999  


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       508 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      ++++|++++.|+.|++||+.+++.+..+..           |...|++++|+|++++|++|+.|++|++|+++
T Consensus       349 ~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          349 GGKFILSCADDKTLRVWDYKNKRCMKTLNA-----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSSCEEEEETTTEEEEECCTTSCCCEEEEC-----------CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcC-----------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            589999999999999999998887666544           78899999999999999999999999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-40  Score=325.15  Aligned_cols=304  Identities=28%  Similarity=0.420  Sum_probs=250.1

Q ss_pred             CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEE
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRI   94 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l   94 (635)
                      ....|.||.++| +|++|+    |++++|++++.++.        +.+||..+++..+.+.+|.+.| .+++|+  +++|
T Consensus       100 ~~~~l~gh~~~V-~~~~~~----p~~~~l~s~s~Dg~--------i~vwd~~~~~~~~~l~~h~~~V-~~v~~~~~~~~l  165 (410)
T 1vyh_C          100 EKYALSGHRSPV-TRVIFH----PVFSVMVSASEDAT--------IKVWDYETGDFERTLKGHTDSV-QDISFDHSGKLL  165 (410)
T ss_dssp             CSCEEECCSSCE-EEEEEC----SSSSEEEEEESSSC--------EEEEETTTCCCCEEECCCSSCE-EEEEECTTSSEE
T ss_pred             ceEeecccCCcE-EEEEEc----CCCCEEEEEeCCCe--------EEEEECCCCcEEEEEeccCCcE-EEEEEcCCCCEE
Confidence            356889999999 999999    99999999987544        4469999999999999999988 999999  8899


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      ++|+.|++|++||+.+                     ++++..+.+|...|.+++|  ++++|++++.|++|++||+.++
T Consensus       166 ~sgs~D~~i~iwd~~~---------------------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          166 ASCSADMTIKLWDFQG---------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             EEEETTSCCCEEETTS---------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEeCCCeEEEEeCCC---------------------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999988888764                     4566778899999999999  8899999999999999999999


Q ss_pred             cceeeccccceeEEee-eccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEeccc
Q psy18018        173 ECLHAELQETEVELSH-GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNA  251 (635)
Q Consensus       173 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~  251 (635)
                      +.+..+..+....... ..+++..+++++.|+.|++||+.++++...+.+|...|.++.|....-..          .+.
T Consensus       225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----------~~~  294 (410)
T 1vyh_C          225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS----------SIS  294 (410)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG----------GGG
T ss_pred             cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc----------chh
Confidence            9888887776544444 44567889999999999999999999999999999999999875321000          000


Q ss_pred             ceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhh
Q psy18018        252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE  331 (635)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (635)
                      .                                                                               
T Consensus       295 ~-------------------------------------------------------------------------------  295 (410)
T 1vyh_C          295 E-------------------------------------------------------------------------------  295 (410)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             h-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             hhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018        332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~  411 (635)
                               ...........++.++++|+.|+.|++||+.++.++..+.+|...|.+++|+                   
T Consensus       296 ---------~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-------------------  347 (410)
T 1vyh_C          296 ---------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-------------------  347 (410)
T ss_dssp             ---------CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-------------------
T ss_pred             ---------hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc-------------------
Confidence                     0000001123357899999999999999999999999999999999988876                   


Q ss_pred             CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECC
Q psy18018        412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV  484 (635)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  484 (635)
                                  |++++|++++.|+.|++||+.+++.+..+.+|...|.+++++  +.+|++|+.|++|++|+++
T Consensus       348 ------------~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          348 ------------SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ------------SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             ------------CCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence                        566778888888888889888888999999999999999985  4599999999999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.2e-40  Score=353.58  Aligned_cols=397  Identities=17%  Similarity=0.202  Sum_probs=308.5

Q ss_pred             CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV  148 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l  148 (635)
                      +..+.+.+|.+.| ++++|+  +++||+++.||.|++||+.                     +++.+..+.+|.++|+++
T Consensus         4 ~~~~~~~~h~~~v-~~i~~sp~~~~la~~~~~g~v~iwd~~---------------------~~~~~~~~~~~~~~v~~~   61 (814)
T 3mkq_A            4 DIKKTFSNRSDRV-KGIDFHPTEPWVLTTLYSGRVEIWNYE---------------------TQVEVRSIQVTETPVRAG   61 (814)
T ss_dssp             CCEEEEEEECSCE-EEEEECSSSSEEEEEETTSEEEEEETT---------------------TTEEEEEEECCSSCEEEE
T ss_pred             ccceeeecCCCce-EEEEECCCCCEEEEEeCCCEEEEEECC---------------------CCceEEEEecCCCcEEEE
Confidence            4567889999998 999999  9999999999888888876                     456678888999999999


Q ss_pred             Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEE-eeeccCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCC
Q psy18018        149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL-SHGYALRSRIVSGSDDNTLKVWSATTG-KCLRTLIGHTG  224 (635)
Q Consensus       149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~  224 (635)
                      +|  ++++|++++.||.|++||+.+++.+..+..+...+. ..+.+++..|++++.||.|++||+.++ .....+.+|..
T Consensus        62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  141 (814)
T 3mkq_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (814)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence            99  899999999999999999999998888876655444 444556779999999999999999987 77788999999


Q ss_pred             CeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        225 GVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       225 ~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      .|.+++|+   ++.+++++.||.|++||+........                                           
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~-------------------------------------------  178 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-------------------------------------------  178 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE-------------------------------------------
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE-------------------------------------------
Confidence            99999995   56999999999999999765321100                                           


Q ss_pred             chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe--cCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                        ...........++++|  ++.++++++.+|.|++||+.+++.+..+
T Consensus       179 ----------------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  224 (814)
T 3mkq_A          179 ----------------------------------LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (814)
T ss_dssp             ----------------------------------EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ----------------------------------EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence                                              0011223455677888  9999999999999999999999999999


Q ss_pred             eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018        380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  459 (635)
Q Consensus       380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  459 (635)
                      .+|...|.+++|+                               |++.++++++.||.|++||+.+++....+..|...+
T Consensus       225 ~~~~~~v~~~~~~-------------------------------~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v  273 (814)
T 3mkq_A          225 EGHMSNVSFAVFH-------------------------------PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS  273 (814)
T ss_dssp             ECCSSCEEEEEEC-------------------------------SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE
T ss_pred             cCCCCCEEEEEEc-------------------------------CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE
Confidence            9999999988876                               455566677777777777777777777777777788


Q ss_pred             EEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecC----------------------------------------CC
Q psy18018        460 SGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSG----------------------------------------RN  496 (635)
Q Consensus       460 ~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------~~  496 (635)
                      .++++.++   .+++++.++.+.+|++........+..                                        ..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (814)
T 3mkq_A          274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELG  353 (814)
T ss_dssp             EEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEEC
T ss_pred             EEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCC
Confidence            88777543   233344455577777654322211110                                        01


Q ss_pred             cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                      .+...+.+++|  +++++++++ |+.+.+|++......                +...+.+++|+||++++++++.++.|
T Consensus       354 ~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----------------~~~~i~~~~~spdg~~la~~~~~g~v  416 (814)
T 3mkq_A          354 SVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----------------AFGKCQDFVWGPDSNSYALIDETGQI  416 (814)
T ss_dssp             CCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----------------EEEECSEEEECTTSSCEEEECTTCCE
T ss_pred             CCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc----------------CCCceEEEEEeCCCCeEEEEeCCCcE
Confidence            13345677777  688999988 899999997643311                24578899999999999999999999


Q ss_pred             EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCC---eEEEEccCCCeeEeEEEEEeee
Q psy18018        575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETK---LVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~---~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ++|+.        +     .++...+.+++|+|||   .+|++++.|+.    |..||++
T Consensus       417 ~l~~~--------~-----~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~----v~~~d~~  459 (814)
T 3mkq_A          417 KYYKN--------F-----KEVTSWSVPMHSAIDRLFSGALLGVKSDGF----VYFFDWD  459 (814)
T ss_dssp             EEEET--------T-----EECTTCCCCCSSCCCEEECSSSEEEEETTE----EEEECTT
T ss_pred             EEEEC--------C-----CCccceEEcCCcCccceecceEEEEecCCE----EEEEECC
Confidence            99962        2     2456678899999999   58889999998    6666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-40  Score=309.71  Aligned_cols=283  Identities=23%  Similarity=0.379  Sum_probs=241.7

Q ss_pred             CceeeccCcceEEEEEEc------CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceE
Q psy18018         73 PKVLKGHDDHVITCLQFS------GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVR  146 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s------~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~  146 (635)
                      .+.+++|.+.| .+++|+      +++|+||+.|++|+|||+.+++.                   .....+.+|...|.
T Consensus        25 ~~~~~~H~~~V-~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------~~~~~l~gh~~~v~   84 (321)
T 3ow8_A           25 FKQEQAHDDAI-WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------DLQWSLEGHQLGVV   84 (321)
T ss_dssp             EEETTSSSSCE-EEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------EEEEEECCCSSCEE
T ss_pred             eeecccCCCcE-EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------eeeeeeccCCCCEE
Confidence            45567999998 999997      45899999999999998764421                   33456889999999


Q ss_pred             EEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy18018        147 CVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT  223 (635)
Q Consensus       147 ~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  223 (635)
                      +++|  ++..+++++.|++|++||+.+++.+..+..+.. +....+.+++.+|++++.+|.|++||+.+++....+..|.
T Consensus        85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~  164 (321)
T 3ow8_A           85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG  164 (321)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence            9999  889999999999999999999988877665543 3334455667899999999999999999988888877776


Q ss_pred             CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018        224 GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE  303 (635)
Q Consensus       224 ~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (635)
                      ..|.+++                                                                         
T Consensus       165 ~~v~~~~-------------------------------------------------------------------------  171 (321)
T 3ow8_A          165 KFILSIA-------------------------------------------------------------------------  171 (321)
T ss_dssp             SCEEEEE-------------------------------------------------------------------------
T ss_pred             ceEEEEE-------------------------------------------------------------------------
Confidence            6665544                                                                         


Q ss_pred             hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018        304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  383 (635)
                                                                   |+|++++|++|+.||.|++||+.+++.+..+.+|.
T Consensus       172 ---------------------------------------------~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~  206 (321)
T 3ow8_A          172 ---------------------------------------------YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA  206 (321)
T ss_dssp             ---------------------------------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ---------------------------------------------ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC
Confidence                                                         77888999999999999999999999999999999


Q ss_pred             cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE
Q psy18018        384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  463 (635)
Q Consensus       384 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  463 (635)
                      ..|.+++|+                               |++++|++++.|+.|++||+++++....+.+|...|.+++
T Consensus       207 ~~v~~l~~s-------------------------------pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          207 MPIRSLTFS-------------------------------PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             SCCCEEEEC-------------------------------TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CceeEEEEc-------------------------------CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            999998876                               5666778888888888888888888899999999999999


Q ss_pred             ec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018        464 LR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       464 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~  527 (635)
                      ++  +.+|++++.|++|++||+.+++++..+..   |...|.+++|  ++++|++++.|+.|++||..
T Consensus       256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD---HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC---CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            84  66999999999999999999999999987   8899999999  58899999999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-39  Score=305.20  Aligned_cols=223  Identities=26%  Similarity=0.397  Sum_probs=189.3

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      |+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++++                               |++++
T Consensus        63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-------------------------------~~~~~  111 (304)
T 2ynn_A           63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-------------------------------PTKPY  111 (304)
T ss_dssp             EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-------------------------------SSSSE
T ss_pred             EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-------------------------------CCCCE
Confidence            67778889999999999999999999999999999999999886                               45555


Q ss_pred             EEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018        429 VVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  504 (635)
                      |++++.|++|++||++++ .....+.+|...|.++++++   .++++|+.|++|++||+.++.....+..  .+...+..
T Consensus       112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~  189 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNY  189 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEE
T ss_pred             EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc--CCcCcEEE
Confidence            666666666666766665 45567889999999999864   5999999999999999988776666543  25567877


Q ss_pred             EEe----cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        505 LQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       505 ~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +.+    ++.+|++++.|++|++||+++++.+..+..           |...|.+++|+|++++|++|+.||+|++||+.
T Consensus       190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-----------h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-----------HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-----------CCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            777    467999999999999999999987776654           68899999999999999999999999999999


Q ss_pred             CCceEEeeeeccCCCCCceEEEEEeCCCCe--EEEEccCCCe
Q psy18018        581 TGEFIRNLVSLDSGGSGGVVWRIRASETKL--VCAVGSRNGT  620 (635)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~--~l~~~~~dg~  620 (635)
                      +++.+..+     ..+...+++++|+|++.  ++++|+.||.
T Consensus       259 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~asg~~~g~  295 (304)
T 2ynn_A          259 TYKVEKTL-----NVGLERSWCIATHPTGRKNYIASGFDNGF  295 (304)
T ss_dssp             TCCEEEEE-----CCSSSSEEEEEECTTCGGGCEEEEETTEE
T ss_pred             CCceeeec-----cCCCccEEEEEECCCCCceEEEEecCCce
Confidence            99999988     56788999999999875  6999999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1e-38  Score=319.65  Aligned_cols=346  Identities=23%  Similarity=0.417  Sum_probs=277.1

Q ss_pred             eEEEEeeCCCcce-EEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECC
Q psy18018        133 ECLHVLVGHLAAV-RCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSAT  211 (635)
Q Consensus       133 ~~~~~l~~h~~~v-~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  211 (635)
                      .....+.+|...| .++.+++++|++++.||+|++||+.+++.+..+..+...+....+.+++.+++++.||.|++||+.
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred             cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence            4566888998874 788889999999999999999999999999988888877777777777799999999999999999


Q ss_pred             CCeEEEEEeCCCCCeEEEEee----CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        212 TGKCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       212 ~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      +++++..+.+|...|.++.+.    ++++++++.||.|++||+........                             
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-----------------------------  242 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----------------------------  242 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-------------------------------
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccc-----------------------------
Confidence            999999999999999999984    47899999999999999775421100                             


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                                                                        ..         ...+...... .       
T Consensus       243 --------------------------------------------------~~---------~~~~~~~~~~-~-------  255 (464)
T 3v7d_B          243 --------------------------------------------------HG---------EEHDYPLVFH-T-------  255 (464)
T ss_dssp             ---------------------------------------------------------------CCSSEEES-C-------
T ss_pred             --------------------------------------------------cc---------ccCCcceEee-c-------
Confidence                                                              00         0000000000 0       


Q ss_pred             EEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc
Q psy18018        368 WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN  447 (635)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  447 (635)
                       ..........+.+|...+.++..+                                 ++++++++.|+.|++||+.+++
T Consensus       256 -~~~~~~~~~~~~~~~~~v~~~~~~---------------------------------~~~l~~~~~d~~i~vwd~~~~~  301 (464)
T 3v7d_B          256 -PEENPYFVGVLRGHMASVRTVSGH---------------------------------GNIVVSGSYDNTLIVWDVAQMK  301 (464)
T ss_dssp             -GGGCTTEEEEECCCSSCEEEEEEE---------------------------------TTEEEEEETTSCEEEEETTTTE
T ss_pred             -cCCCeEEEEEccCccceEEEEcCC---------------------------------CCEEEEEeCCCeEEEEECCCCc
Confidence             011223455666777777666544                                 4456666666677777777788


Q ss_pred             eeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEE
Q psy18018        448 LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd  525 (635)
                      .+..+.+|...|.++.++  ++++++++.||.|++||+.+++++..+..   |...|.+++++++++++++.||.|++||
T Consensus       302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLSDKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEcCCEEEEEeCCCcEEEEE
Confidence            888889999999999885  56999999999999999999999999987   8999999999999999999999999999


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                      +.+++.....            .+...+..++|+|++++|++++ ||.|++||+++++.+..+.    ..+...|++++|
T Consensus       379 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~----~~~~~~v~~v~~  441 (464)
T 3v7d_B          379 ANDYSRKFSY------------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI----LKDADQIWSVNF  441 (464)
T ss_dssp             TTTCCEEEEE------------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT----TTTCSEEEEEEE
T ss_pred             CCCCceeeee------------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh----ccCCCcEEEEEe
Confidence            9987644332            2466788889999999999998 8999999999999988643    467899999999


Q ss_pred             CCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        606 SETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       606 s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      + ++.++++++.||.  +.++.+||.
T Consensus       442 ~-~~~l~~~~~~~g~--~~i~~ldfs  464 (464)
T 3v7d_B          442 K-GKTLVAAVEKDGQ--SFLEILDFS  464 (464)
T ss_dssp             E-TTEEEEEEEETTE--EEEEEEECC
T ss_pred             c-CCEEEEEEEeCCe--EEEEEeecC
Confidence            7 5677778888887  678888874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.6e-39  Score=307.01  Aligned_cols=228  Identities=24%  Similarity=0.408  Sum_probs=183.1

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCC------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESG------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      |+|++..+++|+.|+.+++|++...      .....+.+|...|.+++|+                              
T Consensus       114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------------------------------  163 (354)
T 2pbi_B          114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT------------------------------  163 (354)
T ss_dssp             ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC------------------------------
T ss_pred             ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe------------------------------
Confidence            3344444444444444444443321      2234455677778777765                              


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                       +++..|++++.|++|++||+++++.+..+.+|...|.++.+.    ++++++|+.||.|++||+++++++..+..   |
T Consensus       164 -~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~---h  239 (354)
T 2pbi_B          164 -NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET---H  239 (354)
T ss_dssp             -SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC---C
T ss_pred             -CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---C
Confidence             566677888888888888888899999999999999988873    46999999999999999999999998887   8


Q ss_pred             cccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        499 QSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       499 ~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      ...|.+++|  ++++|++++.|++|++||+++++....+...         .+...+.+++|+|++++|++|+.|+.|++
T Consensus       240 ~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~l~~g~~d~~i~v  310 (354)
T 2pbi_B          240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---------SIIFGASSVDFSLSGRLLFAGYNDYTINV  310 (354)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------TCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---------CcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence            899999999  6899999999999999999987655444321         12346889999999999999999999999


Q ss_pred             EeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        577 WDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      ||+.+++.+..+     .+|.+.|++++|+|||++|++|+.||+  +++|
T Consensus       311 wd~~~~~~~~~l-----~~h~~~v~~l~~spdg~~l~sgs~D~~--v~vW  353 (354)
T 2pbi_B          311 WDVLKGSRVSIL-----FGHENRVSTLRVSPDGTAFCSGSWDHT--LRVW  353 (354)
T ss_dssp             EETTTCSEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTSE--EEEE
T ss_pred             EECCCCceEEEE-----ECCCCcEEEEEECCCCCEEEEEcCCCC--EEec
Confidence            999999998887     589999999999999999999999998  5555

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.1e-39  Score=304.80  Aligned_cols=282  Identities=26%  Similarity=0.425  Sum_probs=235.3

Q ss_pred             CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC  147 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~  147 (635)
                      .+..++|.+|.+.| .+++|+  +++|++|+.||+|++||+.+                     ++.+..+..|...|.+
T Consensus        45 ~~~~~~l~gH~~~v-~~~~~s~d~~~l~s~s~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~  102 (340)
T 1got_B           45 MRTRRTLRGHLAKI-YAMHWGTDSRLLLSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMT  102 (340)
T ss_dssp             CCEEEEECCCSSCE-EEEEECTTSSEEEEEETTTEEEEEETTT---------------------CCEEEEEECSSSCEEE
T ss_pred             chhheeecCCCCce-EEEEECCCCCEEEEEeCCCcEEEEECCC---------------------CCcceEeecCCccEEE
Confidence            34567799999998 999999  89999999999999998764                     4556778899999999


Q ss_pred             EEe--cCCEEEEEeCCCeEEEEeCCCcc----ceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018        148 VQY--DGKLVVSGAYDYMVKIWNPDTEE----CLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG  221 (635)
Q Consensus       148 l~~--~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  221 (635)
                      ++|  ++++|++++.|+.|++||+.+.+    ....+..+........+.+++.+++++.|+.|++||+.+++++..+.+
T Consensus       103 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~  182 (340)
T 1got_B          103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC
Confidence            999  89999999999999999998763    334455566666666777788899999999999999999999999999


Q ss_pred             CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018        222 HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ  301 (635)
Q Consensus       222 h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (635)
                      |.+.|.+++                                                                       
T Consensus       183 h~~~v~~~~-----------------------------------------------------------------------  191 (340)
T 1got_B          183 HTGDVMSLS-----------------------------------------------------------------------  191 (340)
T ss_dssp             CSSCEEEEE-----------------------------------------------------------------------
T ss_pred             CCCceEEEE-----------------------------------------------------------------------
Confidence            999888776                                                                       


Q ss_pred             chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC
Q psy18018        302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG  381 (635)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  381 (635)
                                                                     ++|++.++++|+.|+.|++||+.++..+..+.+
T Consensus       192 -----------------------------------------------~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          192 -----------------------------------------------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             -----------------------------------------------ECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             -----------------------------------------------ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence                                                           666777888888888888888888888888999


Q ss_pred             CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc--CCccE
Q psy18018        382 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG--HQSLT  459 (635)
Q Consensus       382 ~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~v  459 (635)
                      |...|.+++|+                               |++++|++++.|+.|++||+++++.+..+..  +...|
T Consensus       225 h~~~v~~v~~~-------------------------------p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          225 HESDINAICFF-------------------------------PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             CSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CcCCEEEEEEc-------------------------------CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            99999999886                               4555566666666666666666665555442  33468


Q ss_pred             EEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018        460 SGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       460 ~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd  525 (635)
                      .++++  +++++++|+.|+.|++||+.+++.+..+.+   |...|.+++|  ++.+|++|+.|+.|++||
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec---CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            88887  467999999999999999999999999887   9999999999  688999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.9e-39  Score=308.25  Aligned_cols=288  Identities=20%  Similarity=0.320  Sum_probs=241.5

Q ss_pred             CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018         15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      .+..+.|+||.+.| ++++|+    |||++|++++.++.        +.+||..+++.+..+..|...+ .+++|+  ++
T Consensus        45 ~~~~~~l~gH~~~v-~~~~~s----~d~~~l~s~s~Dg~--------v~iWd~~~~~~~~~~~~~~~~v-~~~~~s~~~~  110 (340)
T 1got_B           45 MRTRRTLRGHLAKI-YAMHWG----TDSRLLLSASQDGK--------LIIWDSYTTNKVHAIPLRSSWV-MTCAYAPSGN  110 (340)
T ss_dssp             CCEEEEECCCSSCE-EEEEEC----TTSSEEEEEETTTE--------EEEEETTTCCEEEEEECSSSCE-EEEEECTTSS
T ss_pred             chhheeecCCCCce-EEEEEC----CCCCEEEEEeCCCc--------EEEEECCCCCcceEeecCCccE-EEEEECCCCC
Confidence            34457899999999 999999    99999999987544        4469999999999999999988 899999  99


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      +|++|+.|+.|++||+.+++.                 ..+....+.+|.+.|.++.| ++..+++++.|++|++||+.+
T Consensus       111 ~l~s~~~d~~v~iw~~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~  173 (340)
T 1got_B          111 YVACGGLDNICSIYNLKTREG-----------------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             EEEEEETTCEEEEEETTTCSB-----------------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECccCCC-----------------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence            999999999999999876531                 23456778899999999999 667799999999999999999


Q ss_pred             ccceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEe
Q psy18018        172 EECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW  248 (635)
Q Consensus       172 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w  248 (635)
                      ++.+..+..+...+.. ...+.+..+++++.|+.|++||+.+++++..+.+|...|.+++|+  +++|++++.||+|++|
T Consensus       174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw  253 (340)
T 1got_B          174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            9988888766554444 445567789999999999999999999999999999999999995  7899999999999999


Q ss_pred             cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018        249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK  328 (635)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (635)
                      |+.........                                                                     
T Consensus       254 d~~~~~~~~~~---------------------------------------------------------------------  264 (340)
T 1got_B          254 DLRADQELMTY---------------------------------------------------------------------  264 (340)
T ss_dssp             ETTTTEEEEEE---------------------------------------------------------------------
T ss_pred             ECCCCcEEEEE---------------------------------------------------------------------
Confidence            98764321000                                                                     


Q ss_pred             hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEE
Q psy18018        329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVK  406 (635)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~  406 (635)
                             ...........++|+|+++++++|+.||.|++||..+++.+..+.+|...|.+++|+  +.+|++++.|+.|+
T Consensus       265 -------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~  337 (340)
T 1got_B          265 -------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             -------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             -------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence                   000011234557899999999999999999999999999999999999999999997  45788888888888


Q ss_pred             EEE
Q psy18018        407 VWD  409 (635)
Q Consensus       407 iwd  409 (635)
                      +||
T Consensus       338 iWd  340 (340)
T 1got_B          338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            885

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-38  Score=296.72  Aligned_cols=286  Identities=22%  Similarity=0.411  Sum_probs=220.6

Q ss_pred             CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV  148 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l  148 (635)
                      +..++|.+|.+.| ++++|+  +++|++++.||+|++||+++                     ++.+..+.+|..+|.++
T Consensus         4 ~~~~~~~~h~~~V-~~~~fsp~~~~l~s~~~dg~v~lWd~~~---------------------~~~~~~~~~~~~~v~~~   61 (304)
T 2ynn_A            4 DIKKTFSNRSDRV-KGIDFHPTEPWVLTTLYSGRVELWNYET---------------------QVEVRSIQVTETPVRAG   61 (304)
T ss_dssp             CCEEEEEEECSCE-EEEEECSSSSEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred             eeEEeecCCCCce-EEEEECCCCCEEEEEcCCCcEEEEECCC---------------------CceeEEeeccCCcEEEE
Confidence            4567899999998 999999  99999999999998888764                     45677888999999999


Q ss_pred             Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018        149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV  226 (635)
Q Consensus       149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  226 (635)
                      +|  ++++|++++.|++|++||+                                         .+++++..+.+|.+.|
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~-----------------------------------------~~~~~~~~~~~h~~~v  100 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNY-----------------------------------------NTGEKVVDFEAHPDYI  100 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEET-----------------------------------------TTCCEEEEEECCSSCE
T ss_pred             EEeCCCCEEEEECCCCEEEEEEC-----------------------------------------CCCcEEEEEeCCCCcE
Confidence            99  7777777777766666654                                         4455566778899988


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      .+++                                                                            
T Consensus       101 ~~~~----------------------------------------------------------------------------  104 (304)
T 2ynn_A          101 RSIA----------------------------------------------------------------------------  104 (304)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEE----------------------------------------------------------------------------
Confidence            8877                                                                            


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC-ceEEeeeCCCcc
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSL  385 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~~  385 (635)
                                                                |+|++.+|++|+.|+.|++||+.++ .....+.+|...
T Consensus       105 ------------------------------------------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~  142 (304)
T 2ynn_A          105 ------------------------------------------VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (304)
T ss_dssp             ------------------------------------------ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred             ------------------------------------------EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence                                                      5556666777777777777777665 344667889999


Q ss_pred             eeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec-cCCccEEEEEe
Q psy18018        386 TSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMEL  464 (635)
Q Consensus       386 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~  464 (635)
                      |.+++|++.                              ++..|++|+.|++|++||+.++.....+. +|...+..+.+
T Consensus       143 v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~  192 (304)
T 2ynn_A          143 VMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY  192 (304)
T ss_dssp             EEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE
T ss_pred             EEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEE
Confidence            999998631                              23345555555555555555544444433 45567777766


Q ss_pred             ----cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018        465 ----RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       465 ----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                          ++.++++++.|++|++||+++++++..+.+   |...|.+++|  ++++|++++.||+|++||+++++....+.. 
T Consensus       193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-  268 (304)
T 2ynn_A          193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-  268 (304)
T ss_dssp             CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC-
Confidence                356999999999999999999999999988   8899999999  578999999999999999999988877654 


Q ss_pred             eecCceeEEeccCceecccccCCCe--EEEEecCCCeEEEEeCCCC
Q psy18018        539 FILNPFYFLIYSQPLLCPHLQFNSR--FVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~v~iwd~~~~  582 (635)
                                |...+.+++|+|+++  ++++|+.|| +.+|++.+.
T Consensus       269 ----------~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          269 ----------GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             ----------SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             ----------CCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence                      567899999999885  677777555 888887653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.9e-39  Score=303.49  Aligned_cols=301  Identities=23%  Similarity=0.418  Sum_probs=233.5

Q ss_pred             CCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018         72 DPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV  148 (635)
Q Consensus        72 ~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l  148 (635)
                      +..+|.+|.+.| ++++|+   +++|+||+.|++|++||+....                ...+.++..+.+|...|.++
T Consensus         9 l~~~l~gH~~~V-~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~----------------~~~~~~~~~~~~h~~~v~~~   71 (319)
T 3frx_A            9 LRGTLEGHNGWV-TSLATSAGQPNLLLSASRDKTLISWKLTGDD----------------QKFGVPVRSFKGHSHIVQDC   71 (319)
T ss_dssp             EEEEECCCSSCE-EEEEECSSCTTEEEEEETTSEEEEEEEEEET----------------TEEEEEEEEEECCSSCEEEE
T ss_pred             EEEEEccccceE-EEEEccCCCccEEEEecCCccEEEecCCCCC----------------ccccccceEEeCCcccEEEE
Confidence            456789999998 999998   4799999999999999975321                01245678899999999999


Q ss_pred             Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018        149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV  226 (635)
Q Consensus       149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  226 (635)
                      +|  ++++|++++.|++|++||+.                                         +++++..+.+|...|
T Consensus        72 ~~s~dg~~l~s~s~D~~v~~wd~~-----------------------------------------~~~~~~~~~~h~~~v  110 (319)
T 3frx_A           72 TLTADGAYALSASWDKTLRLWDVA-----------------------------------------TGETYQRFVGHKSDV  110 (319)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETT-----------------------------------------TTEEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECC-----------------------------------------CCCeeEEEccCCCcE
Confidence            99  78888888877777777654                                         444556677899988


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      .+++                                                                            
T Consensus       111 ~~~~----------------------------------------------------------------------------  114 (319)
T 3frx_A          111 MSVD----------------------------------------------------------------------------  114 (319)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEE----------------------------------------------------------------------------
Confidence            8877                                                                            


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  386 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v  386 (635)
                                                                ++|++.++++|+.|+.|++||+. ++.+..+.+|...+
T Consensus       115 ------------------------------------------~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v  151 (319)
T 3frx_A          115 ------------------------------------------IDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWV  151 (319)
T ss_dssp             ------------------------------------------ECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred             ------------------------------------------EcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcE
Confidence                                                      44455566666666666666664 45566777888888


Q ss_pred             eEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-
Q psy18018        387 SGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-  465 (635)
Q Consensus       387 ~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-  465 (635)
                      .++.+.+..-                         ..+++..+++++.|+.|++||+.+++....+.+|...|.+++++ 
T Consensus       152 ~~~~~~~~~~-------------------------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp  206 (319)
T 3frx_A          152 SQVRVVPNEK-------------------------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP  206 (319)
T ss_dssp             EEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT
T ss_pred             EEEEEccCCC-------------------------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC
Confidence            8888763211                         01355678889999999999999999899999999999999984 


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018        466 -NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       466 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                       +++|++++.||.|++||+.+++.+..+..    ...|.+++|  ++.++++++.+ .+++|++..+.....+...... 
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~-  280 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG-  280 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEEC----CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecC----CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-
Confidence             66999999999999999999999888874    467999999  68888888755 5999999987766555432111 


Q ss_pred             ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                        ....+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       281 --~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          281 --YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             --CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             --cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence              11235667899999999999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.9e-38  Score=297.30  Aligned_cols=230  Identities=20%  Similarity=0.370  Sum_probs=188.7

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      |+|+++++++|+.|+.|++||+.+++.+..+.+|...|.+++++                               |++.+
T Consensus        73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-------------------------------~~~~~  121 (319)
T 3frx_A           73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-------------------------------KKASM  121 (319)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-------------------------------TTSCE
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-------------------------------CCCCE
Confidence            66778888888889999999998898889999999999999886                               34455


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--------CEEEEEeCCCcEEEEECCCCceeEEecCCCcccc
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--------NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS  500 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  500 (635)
                      +++++.|++|++||++ ++.+..+.+|...+.++.+.+        ..+++++.|+.|++||+.+.+....+.+   |..
T Consensus       122 l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~  197 (319)
T 3frx_A          122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNS  197 (319)
T ss_dssp             EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC---CCS
T ss_pred             EEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC---CCC
Confidence            6666666666666664 456677888999999988743        3899999999999999999998888887   899


Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      .|.++++  ++++|++++.||.|++||+.+++.+..+.            +...|.+++|+|++.+|++++.+ .+++|+
T Consensus       198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~la~~~~~-~i~v~~  264 (319)
T 3frx_A          198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS------------AQDEVFSLAFSPNRYWLAAATAT-GIKVFS  264 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------------CCSCEEEEEECSSSSEEEEEETT-EEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------CCCcEEEEEEcCCCCEEEEEcCC-CcEEEE
Confidence            9999999  68999999999999999999988666553            24679999999999999988755 599999


Q ss_pred             CCCCceEEeeeecc---CCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        579 VKTGEFIRNLVSLD---SGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       579 ~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      +..+..+..+....   ...+...+.+++|+|||++|++|+.||.  +++|.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~--i~vWd~  315 (319)
T 3frx_A          265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV--IRVWQV  315 (319)
T ss_dssp             ETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC--EEEEEE
T ss_pred             eCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce--EEEEEE
Confidence            99888777664221   1234667999999999999999999998  555544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.1e-39  Score=314.14  Aligned_cols=311  Identities=21%  Similarity=0.349  Sum_probs=226.5

Q ss_pred             EEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC
Q psy18018        124 LRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD  201 (635)
Q Consensus       124 i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (635)
                      +..|+.....+.+.+.+|.++|++++|  ++++|++|+.||+|++||+.                               
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-------------------------------   96 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-------------------------------   96 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-------------------------------
T ss_pred             ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-------------------------------
Confidence            345666677888999999999999999  77788888877777777654                               


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccc
Q psy18018        202 DNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ  279 (635)
Q Consensus       202 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (635)
                                +++.+..+.+|...|.+++|+  +++|++++.|+.+++|++.....                        
T Consensus        97 ----------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~------------------------  142 (380)
T 3iz6_a           97 ----------TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD------------------------  142 (380)
T ss_dssp             ----------TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS------------------------
T ss_pred             ----------CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc------------------------
Confidence                      444455667787777766652  55555555555555555432100                        


Q ss_pred             cccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEe
Q psy18018        280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG  359 (635)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  359 (635)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (380)
T 3iz6_a          143 --------------------------------------------------------------------------------  142 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018        360 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR  439 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  439 (635)
                       .+        ........+.+|...+.++.|.+.                              ++..|++++.|++|+
T Consensus       143 -~~--------~~~~~~~~~~gh~~~v~~~~~~~~------------------------------~~~~l~s~s~D~~i~  183 (380)
T 3iz6_a          143 -RD--------GNMPVSRVLTGHKGYASSCQYVPD------------------------------QETRLITGSGDQTCV  183 (380)
T ss_dssp             -CC--------CSSTTCCBCCCCSSCCCCCBCCSS------------------------------SSSCEEEECTTSCEE
T ss_pred             -cc--------CCccceeeccCCCcceEEEEEecC------------------------------CCCEEEEECCCCcEE
Confidence             00        001123456678888877777521                              122344555555555


Q ss_pred             EEeCCCCceeeee-----ccCCccEEEEEe---cCCEEEEEeCCCcEEEEECC-CCceeEEecCCCcccccEEEEEe--c
Q psy18018        440 VWEAESGNLRHTL-----MGHQSLTSGMEL---RNNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVTCLQF--N  508 (635)
Q Consensus       440 ~~d~~~~~~~~~~-----~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~--~  508 (635)
                      +||+.+++.+..+     .+|...|.++.+   +++++++|+.|+.|++||++ ..+.+..+.+   |...|.+++|  +
T Consensus       184 ~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~  260 (380)
T 3iz6_a          184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG---HEGDINSVKFFPD  260 (380)
T ss_dssp             EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---CSSCCCEEEECTT
T ss_pred             EEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---cCCCeEEEEEecC
Confidence            5555555555444     578889999987   46799999999999999997 4567777877   8899999999  6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018        509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      +++|++++.|++|++||+++++.+..+.......    ..+...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus       261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN----DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS----CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCeEEEEcCCCeEEEEECCCCcEEEEeccccccc----ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            8999999999999999999998776654421111    012345899999999999999999999999999999988776


Q ss_pred             eeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        589 VSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       589 ~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      .... .+|.+.|.+++|+|||++|++|+.||+  +++|.+
T Consensus       337 ~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~--i~iW~~  373 (380)
T 3iz6_a          337 GTLQ-NSHEGRISCLGLSSDGSALCTGSWDKN--LKIWAF  373 (380)
T ss_dssp             CCSC-SSCCCCCCEEEECSSSSEEEEECTTSC--EEEEEC
T ss_pred             eccc-CCCCCceEEEEECCCCCEEEEeeCCCC--EEEEec
Confidence            4322 368899999999999999999999999  455543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=315.66  Aligned_cols=333  Identities=18%  Similarity=0.250  Sum_probs=251.0

Q ss_pred             cEEEEeCCCCeEEEEeeCCCcceEEEEe--cCC-EEEEEeCCCeEEEEeC----CCcc------ceeeccc---------
Q psy18018        123 TLRVWHIESGECLHVLVGHLAAVRCVQY--DGK-LVVSGAYDYMVKIWNP----DTEE------CLHAELQ---------  180 (635)
Q Consensus       123 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~-~l~s~~~dg~v~iwd~----~~~~------~~~~~~~---------  180 (635)
                      .+.+|+++..........|.++|++++|  +++ +|++++.||.|++||+    .+++      ....+..         
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            3456666555555455567799999999  788 9999999999999999    8877      3333333         


Q ss_pred             -cc-eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecc
Q psy18018        181 -ET-EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIG  258 (635)
Q Consensus       181 -~~-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~  258 (635)
                       +. .+....+.+++.+|++++.||.|++|| .+++.+..+.+|...|.+++|                           
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~---------------------------  157 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW---------------------------  157 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEE---------------------------
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEE---------------------------
Confidence             23 455555566778999999999999999 678888889999998888885                           


Q ss_pred             ccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccc
Q psy18018        259 QLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRN  338 (635)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (635)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (425)
T 1r5m_A          158 --------------------------------------------------------------------------------  157 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc---------------eeEEEEeCCEEEEEeCCC
Q psy18018        339 KKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL---------------TSGMELRNNILVSGNADS  403 (635)
Q Consensus       339 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~l~s~~~dg  403 (635)
                                 +|++++|++++.||.|++||+.+++.+..+..+...               +.++++.           
T Consensus       158 -----------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  215 (425)
T 1r5m_A          158 -----------NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV-----------  215 (425)
T ss_dssp             -----------CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE-----------
T ss_pred             -----------CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc-----------
Confidence                       333444444444444555554444444444433332               3333332           


Q ss_pred             cEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEE
Q psy18018        404 TVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVW  481 (635)
Q Consensus       404 ~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw  481 (635)
                                          ++ ..+++++.++.|++||+.+++....+.+|...+.++.++  ++++++++.|+.|++|
T Consensus       216 --------------------~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          216 --------------------DD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW  274 (425)
T ss_dssp             --------------------ET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             --------------------CC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence                                33 347777888888888988888888899999999999884  6699999999999999


Q ss_pred             ECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018        482 DIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       482 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                      |+.+++.+..+..   |...|.+++|+  + ++++++.|+.|++||+++++.+..+..           |...|.+++|+
T Consensus       275 d~~~~~~~~~~~~---~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~s  339 (425)
T 1r5m_A          275 HGGNGNSQNCFYG---HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----------DGVPIFAGRIS  339 (425)
T ss_dssp             CSSSBSCSEEECC---CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----------TTCCEEEEEEC
T ss_pred             ECCCCccceEecC---CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----------CCccEEEEEEc
Confidence            9999998888876   88899999993  5 999999999999999999887665543           67899999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCc--------------------eEEeeeeccCCCCCc--eEEEEEeCCCCeEEEEccC
Q psy18018        560 FNSRFVITSSDDGTVKLWDVKTGE--------------------FIRNLVSLDSGGSGG--VVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       560 ~~~~~l~~~~~d~~v~iwd~~~~~--------------------~~~~~~~~~~~~~~~--~i~~l~~s~d~~~l~~~~~  617 (635)
                      |++++|++++.||.|++||+.+++                    .+..+     ..|..  .|.+++|+|++++|++++.
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-----QSSQDNDYIFDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-----CCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-----cCcccCCceEEEEccCCCceEEEEec
Confidence            999999999999999999999988                    77777     45655  9999999999999999999


Q ss_pred             CCeeEeEEEEEee
Q psy18018        618 NGTEETKLLVLDF  630 (635)
Q Consensus       618 dg~~~~~l~~~d~  630 (635)
                      ||.    |..||+
T Consensus       415 dg~----i~iw~~  423 (425)
T 1r5m_A          415 LQE----GSVVAI  423 (425)
T ss_dssp             SSC----CEEEEC
T ss_pred             Cce----EEEEee
Confidence            998    444444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-37  Score=311.66  Aligned_cols=350  Identities=25%  Similarity=0.404  Sum_probs=269.5

Q ss_pred             eecCCC-CCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCc
Q psy18018         65 WRTRPI-KDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLA  143 (635)
Q Consensus        65 wd~~~~-~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~  143 (635)
                      |..... .....+.+|.+.++.|++|++++|++|+.||+|++||+.+                     ++++..+.+|.+
T Consensus       105 w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~---------------------~~~~~~~~~h~~  163 (464)
T 3v7d_B          105 WYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSIN---------------------KKFLLQLSGHDG  163 (464)
T ss_dssp             HHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSS
T ss_pred             hcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCC---------------------CcEEEEEeCCCc
Confidence            543332 3456899999998899999999999999999888888764                     566788889999


Q ss_pred             ceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeec---cCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        144 AVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY---ALRSRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       144 ~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      +|++++| .+..|++++.||+|++||+.+++.+..+..+...+....+   +++..+++++.|+.|++||+.+++.....
T Consensus       164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  243 (464)
T 3v7d_B          164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH  243 (464)
T ss_dssp             CEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred             CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence            9999999 4559999999999999999999988888766555544444   35588999999999999999887655433


Q ss_pred             eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      ........                  ........                                              
T Consensus       244 ~~~~~~~~------------------~~~~~~~~----------------------------------------------  259 (464)
T 3v7d_B          244 GEEHDYPL------------------VFHTPEEN----------------------------------------------  259 (464)
T ss_dssp             ---CCSSE------------------EESCGGGC----------------------------------------------
T ss_pred             cccCCcce------------------EeeccCCC----------------------------------------------
Confidence            21111000                  00000000                                              


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                       .........+...+.++++++.++++|+.||.|++||+.+++.+..+
T Consensus       260 ---------------------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  306 (464)
T 3v7d_B          260 ---------------------------------PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  306 (464)
T ss_dssp             ---------------------------------TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ---------------------------------eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence                                             00001123355566778999999999999999999999999999999


Q ss_pred             eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018        380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  459 (635)
Q Consensus       380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  459 (635)
                      .+|...|.+++++                               |+++++++++.|+.|++||+.+++.+..+.+|...|
T Consensus       307 ~~~~~~v~~~~~~-------------------------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v  355 (464)
T 3v7d_B          307 SGHTDRIYSTIYD-------------------------------HERKRCISASMDTTIRIWDLENGELMYTLQGHTALV  355 (464)
T ss_dssp             CCCSSCEEEEEEE-------------------------------TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cCCCCCEEEEEEc-------------------------------CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence            9999999988876                               566678888888888888988899999999999999


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018        460 SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF  539 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  539 (635)
                      .++.++++++++++.||.|++||+.+++.......  .+...+.++..+++++++++ ||.|++||+++++.+...... 
T Consensus       356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~-  431 (464)
T 3v7d_B          356 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK-  431 (464)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT-
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc-
Confidence            99999999999999999999999998877666542  23444555666899999998 899999999999988764332 


Q ss_pred             ecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                               |...|.+++|+ +..++++++.||.+.+|
T Consensus       432 ---------~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          432 ---------DADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ---------TCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             ---------CCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence                     57889999997 55666677777766554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=300.24  Aligned_cols=298  Identities=23%  Similarity=0.356  Sum_probs=211.9

Q ss_pred             CCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEe-eC-CCcceE
Q psy18018         69 PIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL-VG-HLAAVR  146 (635)
Q Consensus        69 ~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l-~~-h~~~v~  146 (635)
                      +.++++.|++|.+.| .+++|++.+||+|+.|++|++||+.++.                   .+....+ .+ |..+|.
T Consensus         3 ~~~~~~~~~~h~~~v-~~~~~s~~~las~~~D~~i~lw~~~~~~-------------------~~~~~~~~~~~h~~~v~   62 (330)
T 2hes_X            3 SINLIKSLKLYKEKI-WSFDFSQGILATGSTDRKIKLVSVKYDD-------------------FTLIDVLDETAHKKAIR   62 (330)
T ss_dssp             CCEEEEEEECCSSCE-EEEEEETTEEEEEESSSCEEEEECSSSC-------------------CEEEEEECTTCCCSCEE
T ss_pred             ccccceeeccCCCce-eeeccCCCEEEEEcCCCEEEEEEecCCC-------------------eEEEEEEecCCccCCEE
Confidence            455678899999998 9999996699999999999999987542                   2334445 34 999999


Q ss_pred             EEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018        147 CVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG  224 (635)
Q Consensus       147 ~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  224 (635)
                      +++|  ++++|++++.|++|++||+.....                                  +....+++..+.+|..
T Consensus        63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~----------------------------------~~~~~~~~~~~~~h~~  108 (330)
T 2hes_X           63 SVAWRPHTSLLAAGSFDSTVSIWAKEESAD----------------------------------RTFEMDLLAIIEGHEN  108 (330)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEC-----------------------------------------CCCEEEEEEC----
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcccCcC----------------------------------ccccceeEEEEcCCCC
Confidence            9999  899999999999999999754210                                  0013455677888999


Q ss_pred             CeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       225 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      .|.+++|                                                                         
T Consensus       109 ~V~~v~~-------------------------------------------------------------------------  115 (330)
T 2hes_X          109 EVKGVAW-------------------------------------------------------------------------  115 (330)
T ss_dssp             CEEEEEE-------------------------------------------------------------------------
T ss_pred             cEEEEEE-------------------------------------------------------------------------
Confidence            8888875                                                                         


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC----CceEEeee
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES----GNLRHTLM  380 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~----~~~~~~~~  380 (635)
                                                                   +|++++|++|+.|+.|++||+..    .+++..+.
T Consensus       116 ---------------------------------------------sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~  150 (330)
T 2hes_X          116 ---------------------------------------------SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ  150 (330)
T ss_dssp             ---------------------------------------------CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred             ---------------------------------------------CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence                                                         44444555555555555555421    23456678


Q ss_pred             CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC--ceeeeeccCCcc
Q psy18018        381 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSL  458 (635)
Q Consensus       381 ~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~  458 (635)
                      +|...|.+++|+                               |++.+|++++.|++|++||..++  +.+..+.+|...
T Consensus       151 ~h~~~v~~v~~~-------------------------------p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~  199 (330)
T 2hes_X          151 EHSQDVKHVIWH-------------------------------PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT  199 (330)
T ss_dssp             CCSSCEEEEEEC-------------------------------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             cCCCceEEEEEC-------------------------------CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence            899999999886                               34445555555555566655444  567788999999


Q ss_pred             EEEEEecC----CEEEEEeCCCcEEEEECCCC--------ceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEE
Q psy18018        459 TSGMELRN----NILVSGNADSTVKVWDIVSG--------QCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       459 v~~~~~~~----~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd  525 (635)
                      |.++.+++    .++++++.|++|++||+..+        .+...+.  ..|...|.+++| ++.+|++++.||.|++|+
T Consensus       200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP--DVHKRQVYNVAWGFNGLIASVGADGVLAVYE  277 (330)
T ss_dssp             EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC--SCCSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc--cccccceEEEEEcCCCEEEEEeCCCEEEEEE
Confidence            99999864    48999999999999998754        2233332  237889999999 467899999999999999


Q ss_pred             CCCCce--eeeeccceecCceeEEeccC-ceecccccC--CCeEEEEecCCCeEEEEeCCC
Q psy18018        526 VKTGEF--STPLMSSFILNPFYFLIYSQ-PLLCPHLQF--NSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       526 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ..+++.  .....          ..|.. .|.+++|+|  ++++||+|+.||+|+|||+++
T Consensus       278 ~~~~~~~~~~~~~----------~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          278 EVDGEWKVFAKRA----------LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EETTEEEEEEEES----------CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEeccc----------cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            887642  11111          12555 899999999  789999999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=315.86  Aligned_cols=333  Identities=19%  Similarity=0.252  Sum_probs=257.4

Q ss_pred             eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeec----CCCC------CCc
Q psy18018          6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRT----RPIK------DPK   74 (635)
Q Consensus         6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~----~~~~------~~~   74 (635)
                      +.+.|+............|.+.| +|++|+    |+|+ +||+++.++        .+.+||.    .+++      ...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s----~~~~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~   92 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNI-VSSTWN----PLDESILAYGEKNS--------VARLARIVETDQEGKKYWKLTIIA   92 (425)
T ss_dssp             --------CCCEECEEEEECSCC-SEEEEC----SSCTTEEEEEETBT--------EEEEEEEEEC------CEEEEEEE
T ss_pred             ccccccchhhhhheeeeeccCce-EEEEEC----CCCCcEEEEecCCc--------eEEEEEEecccCCccccccccccc
Confidence            44555544443333444556898 999999    9999 999998654        4456999    8877      344


Q ss_pred             eeec----------cCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCC
Q psy18018         75 VLKG----------HDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL  142 (635)
Q Consensus        75 ~l~~----------h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~  142 (635)
                      .+..          |.+.+ ++++|+  +++|++++.||.|++||.                      +++.+..+.+|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~~~----------------------~~~~~~~~~~~~  149 (425)
T 1r5m_A           93 ELRHPFALSASSGKTTNQV-TCLAWSHDGNSIVTGVENGELRLWNK----------------------TGALLNVLNFHR  149 (425)
T ss_dssp             EEECCCCCC------CBCE-EEEEECTTSSEEEEEETTSCEEEEET----------------------TSCEEEEECCCC
T ss_pred             cccccccccccccCCCCce-EEEEEcCCCCEEEEEeCCCeEEEEeC----------------------CCCeeeeccCCC
Confidence            4544          67677 999999  899999999999988883                      245677788999


Q ss_pred             cceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecccccee---------------EEeeeccCCCEEEEEeCCCcE
Q psy18018        143 AAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEV---------------ELSHGYALRSRIVSGSDDNTL  205 (635)
Q Consensus       143 ~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~dg~i  205 (635)
                      .+|.+++|  ++++|++++.||.|++||+.+++.+..+..+...               .....+.+++.+++++.+|.|
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  229 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI  229 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence            99999999  8999999999999999999999887766655443               444455566778888888888


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018        206 KVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI  285 (635)
Q Consensus       206 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (635)
                      ++||+.+++.+..+.+|...|.+++                                                       
T Consensus       230 ~~~d~~~~~~~~~~~~~~~~i~~~~-------------------------------------------------------  254 (425)
T 1r5m_A          230 FVYQITEKTPTGKLIGHHGPISVLE-------------------------------------------------------  254 (425)
T ss_dssp             EEEETTCSSCSEEECCCSSCEEEEE-------------------------------------------------------
T ss_pred             EEEEcCCCceeeeeccCCCceEEEE-------------------------------------------------------
Confidence            8888888777777777777766655                                                       


Q ss_pred             eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018        286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI  365 (635)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  365 (635)
                                                                                     ++|++++|++++.||.|
T Consensus       255 ---------------------------------------------------------------~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          255 ---------------------------------------------------------------FNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             ---------------------------------------------------------------EETTTTEEEEEETTSCE
T ss_pred             ---------------------------------------------------------------ECCCCCEEEEEcCCCEE
Confidence                                                                           66677778888888888


Q ss_pred             EEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018        366 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES  445 (635)
Q Consensus       366 ~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  445 (635)
                      ++||+.+++.+..+..|...+.+++|+                               |++ .+++++.|+.|++||+.+
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~-------------------------------~~~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYGHSQSIVSASWV-------------------------------GDD-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             EEECSSSBSCSEEECCCSSCEEEEEEE-------------------------------TTT-EEEEEETTSEEEEEETTT
T ss_pred             EEEECCCCccceEecCCCccEEEEEEC-------------------------------CCC-EEEEEeCCCcEEEEECCC
Confidence            888888888888888888889888876                               344 567777777888888888


Q ss_pred             CceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCc--------------------eeEEecCCCcccc--c
Q psy18018        446 GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQ--------------------CLQTLSGRNKHQS--A  501 (635)
Q Consensus       446 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~--~  501 (635)
                      ++.+..+..|...+.++.++  ++++++++.||.|++||+.+++                    .+..+..   |..  .
T Consensus       320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  396 (425)
T 1r5m_A          320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS---SQDNDY  396 (425)
T ss_dssp             TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC---TTCCCC
T ss_pred             CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC---cccCCc
Confidence            88888888899999999885  6799999999999999999887                    7788876   655  8


Q ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018        502 VTCLQF--NSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       502 v~~~~~--~~~~l~~~~~d~~i~vwd~~  527 (635)
                      |.+++|  ++++|++++.||.|++|+++
T Consensus       397 v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          397 IFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eEEEEccCCCceEEEEecCceEEEEeec
Confidence            999999  68899999999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.8e-39  Score=307.03  Aligned_cols=284  Identities=17%  Similarity=0.214  Sum_probs=216.8

Q ss_pred             eCCCcceEEEEe--cCCEEEEEeC------CCeEEEEeCCCccceeec----cccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018        139 VGHLAAVRCVQY--DGKLVVSGAY------DYMVKIWNPDTEECLHAE----LQETEVELSHGYALRSRIVSGSDDNTLK  206 (635)
Q Consensus       139 ~~h~~~v~~l~~--~~~~l~s~~~------dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~  206 (635)
                      .+|...|++++|  ||++||+++.      |++|++|+..++.....+    ..+...+..+.+.+++.+++++.||+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~  118 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE  118 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence            479999999999  9999999997      788999998877654332    2344445666666777888899999999


Q ss_pred             EEECCCCeEEE----EEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018        207 VWSATTGKCLR----TLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR  282 (635)
Q Consensus       207 vwd~~~~~~~~----~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (635)
                      +||+.+++...    ...+|...|.+++                                                    
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~----------------------------------------------------  146 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLS----------------------------------------------------  146 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEE----------------------------------------------------
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEE----------------------------------------------------
Confidence            99998876542    2335666666555                                                    


Q ss_pred             ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018        283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD  362 (635)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  362 (635)
                                                                                        |+|++++|++|+.|
T Consensus       147 ------------------------------------------------------------------~spdg~~l~sgs~d  160 (357)
T 4g56_B          147 ------------------------------------------------------------------VFSDGTQAVSGGKD  160 (357)
T ss_dssp             ------------------------------------------------------------------ECSSSSEEEEEETT
T ss_pred             ------------------------------------------------------------------ECCCCCEEEEEeCC
Confidence                                                                              78888999999999


Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEe
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE  442 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  442 (635)
                      +.|++||+.+++.+..+.+|...|.+++|+++                              ....+++++.|+.|++||
T Consensus       161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~------------------------------~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG------------------------------KDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------CSSCEEEEETTSCEEECC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCCEEEEEEccC------------------------------CCceeeeeccCCceEEEE
Confidence            99999999999999999999999999998621                              112355556666666666


Q ss_pred             CCCCceeeee--ccCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cC-CEEEE
Q psy18018        443 AESGNLRHTL--MGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NS-RFVIT  514 (635)
Q Consensus       443 ~~~~~~~~~~--~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~  514 (635)
                      +++++....+  ..|...+.+++++   +.++++|+.|+.|++||+++++++..+..   |...|++++|  ++ ++|++
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             TTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEE
T ss_pred             CCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEE
Confidence            6666655444  3466788899885   45899999999999999999999999887   8899999999  34 68999


Q ss_pred             EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       515 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                      ++.|++|+|||+++++.+..+            .|...|++++|+| |+++|++++.||+|++||+.+....
T Consensus       288 gs~D~~i~iwd~~~~~~~~~~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          288 ISEDCTVAVLDADFSEVFRDL------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EETTSCEEEECTTSCEEEEEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeCCCEEEEEECCCCcEeEEC------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            999999999999988765433            3788999999998 8999999999999999999765433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=301.32  Aligned_cols=236  Identities=17%  Similarity=0.216  Sum_probs=196.2

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEE----eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      ...++|+|++ .+++|+.||.|++||+.+++.+.    ...+|...|.+++|+                           
T Consensus        85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s---------------------------  136 (344)
T 4gqb_B           85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL---------------------------  136 (344)
T ss_dssp             EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC---------------------------
T ss_pred             EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC---------------------------
Confidence            4567788885 68899999999999999887543    345899999999876                           


Q ss_pred             EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018        420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  496 (635)
                          |++++|++|+.|++|++||+.+++.+..+.+|...|.++.++  + .++++++.|++|++||++++++...+... 
T Consensus       137 ----pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-  211 (344)
T 4gqb_B          137 ----SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-  211 (344)
T ss_dssp             ----TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred             ----CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-
Confidence                677788888888999999999999999999999999999984  3 48999999999999999999988877532 


Q ss_pred             cccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCC
Q psy18018        497 KHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDG  572 (635)
Q Consensus       497 ~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~  572 (635)
                      .+...+.+++|   ++++|++|+.||.|++||+++++.+..+..           |...|++++|+|++ ++||+|+.|+
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-----------h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-----------HSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-----------CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-----------CCCCEEEEEEccCCCeEEEEEeCCC
Confidence            25567888988   367899999999999999999887766654           78899999999998 5899999999


Q ss_pred             eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEEeee
Q psy18018        573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +|+|||+.+++++. +     .+|.+.|++|+|+|+++ +|++++.||+  +++|.++-+
T Consensus       281 ~i~vwd~~~~~~~~-~-----~~H~~~V~~v~~sp~~~~llas~s~D~~--v~~w~v~~~  332 (344)
T 4gqb_B          281 SLAVLDSSLSELFR-S-----QAHRDFVRDATWSPLNHSLLTTVGWDHQ--VVHHVVPTE  332 (344)
T ss_dssp             CEEEECTTCCEEEE-E-----CCCSSCEEEEEECSSSTTEEEEEETTSC--EEEEECCC-
T ss_pred             eEEEEECCCCcEEE-E-----cCCCCCEEEEEEeCCCCeEEEEEcCCCe--EEEEECCCC
Confidence            99999999988654 3     47999999999999986 6789999999  667766543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-38  Score=305.51  Aligned_cols=307  Identities=14%  Similarity=0.178  Sum_probs=219.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeC------ceeEEEecccceeeeccccccc
Q psy18018        192 LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGST------DRTLKGWSNAERILAIGQLIDS  263 (635)
Q Consensus       192 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~  263 (635)
                      ..+.++.+..+.....|++....    ..+|...|.+++|  +|.+|++++.      |+.+++|+..+.......    
T Consensus        15 ~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~----   86 (357)
T 4g56_B           15 TENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL----   86 (357)
T ss_dssp             -----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG----
T ss_pred             ccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE----
Confidence            34556666677788899876433    3579999999999  5899999998      678888876543211000    


Q ss_pred             cCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCC
Q psy18018        264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV  343 (635)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (635)
                                                                                            ......+...
T Consensus        87 ----------------------------------------------------------------------~~~~~~~~~~   96 (357)
T 4g56_B           87 ----------------------------------------------------------------------CTAGVQTEAG   96 (357)
T ss_dssp             ----------------------------------------------------------------------CSEEEECSSC
T ss_pred             ----------------------------------------------------------------------ecccCCCCCC
Confidence                                                                                  0000112223


Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEE----eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      ...++|+|++. +++++.||.|++||+.+++...    ...+|...|.+++|+                           
T Consensus        97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s---------------------------  148 (357)
T 4g56_B           97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF---------------------------  148 (357)
T ss_dssp             EEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC---------------------------
T ss_pred             EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC---------------------------
Confidence            45678999876 4567789999999998876542    345788888888875                           


Q ss_pred             EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018        420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  496 (635)
                          |++++|++++.|+.|++||+.+++.+..+.+|...|.++++.  + .++++++.|+.|++||++++++...+.. .
T Consensus       149 ----pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~  223 (357)
T 4g56_B          149 ----SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-C  223 (357)
T ss_dssp             ----SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-T
T ss_pred             ----CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-c
Confidence                677788888888999999999999999999999999999984  3 4899999999999999999887766543 2


Q ss_pred             cccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCC
Q psy18018        497 KHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDG  572 (635)
Q Consensus       497 ~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~  572 (635)
                      .+...+.+++|+   +.+|++|+.|+.|++||+++++....+..           |...|++++|+|++ ++||+|+.|+
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-----------HSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-----------CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-----------cceeEEEEEEcCCCCCEEEEEeCCC
Confidence            366789999993   67899999999999999999887766554           68899999999987 6899999999


Q ss_pred             eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEccCCCeeEeEEEEE
Q psy18018        573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      +|+|||+++++.+..+      +|.+.|++|+|+| |+.+|++++.||+  +++|.+
T Consensus       293 ~i~iwd~~~~~~~~~~------~H~~~V~~vafsP~d~~~l~s~s~Dg~--v~iW~~  341 (357)
T 4g56_B          293 TVAVLDADFSEVFRDL------SHRDFVTGVAWSPLDHSKFTTVGWDHK--VLHHHL  341 (357)
T ss_dssp             CEEEECTTSCEEEEEC------CCSSCEEEEEECSSSTTEEEEEETTSC--EEEEEC
T ss_pred             EEEEEECCCCcEeEEC------CCCCCEEEEEEeCCCCCEEEEEcCCCe--EEEEEC
Confidence            9999999999887655      6899999999998 8999999999998  455544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=300.91  Aligned_cols=279  Identities=19%  Similarity=0.237  Sum_probs=214.5

Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc-------c----ceeeccccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE-------E----CLHAELQETEVELSHGYALRSRIVSGSDDNTLK  206 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  206 (635)
                      .|...|.+++|  ||++|++++ |+++++||....       .    ...........+..+.+.+++++++++.||.|+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~  106 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVE  106 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEE
Confidence            67888999999  899999887 778888873211       0    111111122335556666778999999999999


Q ss_pred             EEECCCCeEEEE----EeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018        207 VWSATTGKCLRT----LIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR  282 (635)
Q Consensus       207 vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (635)
                      +||+.+++.+..    +.+|.+.|.+++                                                    
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~----------------------------------------------------  134 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVS----------------------------------------------------  134 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEE----------------------------------------------------
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEE----------------------------------------------------
Confidence            999998875543    347888877766                                                    


Q ss_pred             ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018        283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD  362 (635)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  362 (635)
                                                                                        |+|++++|++|+.|
T Consensus       135 ------------------------------------------------------------------~spdg~~l~sgs~d  148 (344)
T 4gqb_B          135 ------------------------------------------------------------------VLSSGTQAVSGSKD  148 (344)
T ss_dssp             ------------------------------------------------------------------ECTTSSEEEEEETT
T ss_pred             ------------------------------------------------------------------ECCCCCEEEEEeCC
Confidence                                                                              77888899999999


Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC-cEEEEEeCCCcEEEE
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG-VHVVSGSLDTSIRVW  441 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~  441 (635)
                      +.|++||+.+++++..+.+|...|.+++|++                               ++ ..+++++.|++|++|
T Consensus       149 ~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~-------------------------------~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          149 ICIKVWDLAQQVVLSSYRAHAAQVTCVAASP-------------------------------HKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECS-------------------------------SCTTEEEEEETTSCEEEE
T ss_pred             CeEEEEECCCCcEEEEEcCcCCceEEEEecC-------------------------------CCCCceeeeccccccccc
Confidence            9999999999999999999999999999862                               22 234555566666666


Q ss_pred             eCCCCceeeeec--cCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cC-CEEE
Q psy18018        442 EAESGNLRHTLM--GHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NS-RFVI  513 (635)
Q Consensus       442 d~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~  513 (635)
                      |+++++....+.  .|...+.++.++   ++++++|+.||.|++||+++++++..+.+   |...|++++|  ++ ++|+
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp~g~~~la  274 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLA  274 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---CSSCEEEEEECSSSSCCEE
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEccCCCeEEE
Confidence            666666665553  345567888874   45899999999999999999999999988   8999999999  44 6899


Q ss_pred             EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe-EEEEecCCCeEEEEeCCCCc
Q psy18018        514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSSDDGTVKLWDVKTGE  583 (635)
Q Consensus       514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~v~iwd~~~~~  583 (635)
                      +++.|++|++||+++++... +           ..|...|++++|+|+++ +|++++.|++|++|++.+..
T Consensus       275 sgs~D~~i~vwd~~~~~~~~-~-----------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          275 SLSEDCSLAVLDSSLSELFR-S-----------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEETTSCEEEECTTCCEEEE-E-----------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEeCCCeEEEEECCCCcEEE-E-----------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99999999999999887543 2           24789999999999986 67799999999999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-38  Score=304.57  Aligned_cols=290  Identities=22%  Similarity=0.335  Sum_probs=238.9

Q ss_pred             CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018         15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS   92 (635)
Q Consensus        15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~   92 (635)
                      .+..+.|.||.+.| .|++|+    |++++||+++.++        .+.+||..+++..+.+..|...+ .+++|+  ++
T Consensus        54 ~~~~~~l~gH~~~V-~~~~~s----~d~~~l~s~s~Dg--------~v~vWd~~~~~~~~~~~~~~~~v-~~~~~sp~g~  119 (354)
T 2pbi_B           54 MKTRRTLKGHGNKV-LCMDWC----KDKRRIVSSSQDG--------KVIVWDSFTTNKEHAVTMPCTWV-MACAYAPSGC  119 (354)
T ss_dssp             CCEEEEEECCSSCE-EEEEEC----TTSSEEEEEETTS--------EEEEEETTTCCEEEEEECSSSCC-CEEEECTTSS
T ss_pred             cEEEEEecCCCCeE-EEEEEC----CCCCEEEEEeCCC--------eEEEEECCCCCcceEEecCCCCE-EEEEECCCCC
Confidence            34557899999999 999999    9999999998654        44569999999999999999888 899999  99


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD  170 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~  170 (635)
                      +||+|+.|+.+++|++.....               .........+.+|.+.|.+++|  ++..|++++.|++|++||+.
T Consensus       120 ~lasg~~d~~i~v~~~~~~~~---------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~  184 (354)
T 2pbi_B          120 AIACGGLDNKCSVYPLTFDKN---------------ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE  184 (354)
T ss_dssp             EEEEESTTSEEEEEECCCCTT---------------CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             EEEEeeCCCCEEEEEEecccc---------------ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999864320               0112345667789999999999  78899999999999999999


Q ss_pred             CccceeeccccceeEEeeecc---CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeE
Q psy18018        171 TEECLHAELQETEVELSHGYA---LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTL  245 (635)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i  245 (635)
                      +++.+..+..+........+.   ++..+++++.||.|++||+++++++..+.+|...|.+++|+  ++.|++++.|++|
T Consensus       185 ~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v  264 (354)
T 2pbi_B          185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC  264 (354)
T ss_dssp             TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence            999988887776555444433   35799999999999999999999999999999999999994  7899999999999


Q ss_pred             EEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcch
Q psy18018        246 KGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLW  325 (635)
Q Consensus       246 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (635)
                      ++||+........                                        +                          
T Consensus       265 ~lwd~~~~~~~~~----------------------------------------~--------------------------  278 (354)
T 2pbi_B          265 RLYDLRADREVAI----------------------------------------Y--------------------------  278 (354)
T ss_dssp             EEEETTTTEEEEE----------------------------------------E--------------------------
T ss_pred             EEEECCCCcEEEE----------------------------------------E--------------------------
Confidence            9999875321100                                        0                          


Q ss_pred             hhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCC
Q psy18018        326 REKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADS  403 (635)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg  403 (635)
                                ...........++|+|++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+  +.+|++++.|+
T Consensus       279 ----------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          279 ----------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             ----------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ----------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence                      000011223457799999999999999999999999999999999999999999997  45777777777


Q ss_pred             cEEEEE
Q psy18018        404 TVKVWD  409 (635)
Q Consensus       404 ~i~iwd  409 (635)
                      .|++|+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            777774

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-38  Score=307.34  Aligned_cols=298  Identities=24%  Similarity=0.432  Sum_probs=225.3

Q ss_pred             eeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018         62 EINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV  139 (635)
Q Consensus        62 ~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~  139 (635)
                      ...|+.....+.++|.+|.+.| ++++|+  +++|+||+.|++|++||+.+                     ++....+.
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V-~~~~~sp~~~~l~s~s~D~~v~iWd~~~---------------------~~~~~~~~  105 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKV-YSLDWTPEKNWIVSASQDGRLIVWNALT---------------------SQKTHAIK  105 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCE-EEEEECTTSSCEEEEETTSEEEEEETTT---------------------TEEEEEEE
T ss_pred             ccccccceeEEeecccccccEE-EEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------CccceEEe
Confidence            3458888888889999999998 999999  89999999999999998764                     45677888


Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc-------ceeeccccceeEEeeeccC--CCEEEEEeCCCcEEEE
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE-------CLHAELQETEVELSHGYAL--RSRIVSGSDDNTLKVW  208 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vw  208 (635)
                      +|...|.+++|  ++++|++++.|+.+++||+.+..       ....+..+......+.+.+  +.+|++++.|++|++|
T Consensus       106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w  185 (380)
T 3iz6_a          106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW  185 (380)
T ss_dssp             CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence            99999999999  89999999999999999987543       2223344444333333333  4579999999999999


Q ss_pred             ECCCCeEEEEE-----eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccc
Q psy18018        209 SATTGKCLRTL-----IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD  283 (635)
Q Consensus       209 d~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (635)
                      |+.+++.+..+     .+|...|.++.+                                                    
T Consensus       186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~----------------------------------------------------  213 (380)
T 3iz6_a          186 DVTTGQRISIFGSEFPSGHTADVLSLSI----------------------------------------------------  213 (380)
T ss_dssp             CTTTCCEEEEECCCSSSSCCSCEEEEEE----------------------------------------------------
T ss_pred             EcCCCcEEEEeecccCCCCccCeEEEEe----------------------------------------------------
Confidence            99999888776     456666666553                                                    


Q ss_pred             eeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCC
Q psy18018        284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLD  362 (635)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d  362 (635)
                                                                                        ++ ++.++++|+.|
T Consensus       214 ------------------------------------------------------------------~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          214 ------------------------------------------------------------------NSLNANMFISGSCD  227 (380)
T ss_dssp             ------------------------------------------------------------------CSSSCCEEEEEETT
T ss_pred             ------------------------------------------------------------------ecCCCCEEEEEECC
Confidence                                                                              22 45566777777


Q ss_pred             CeEEEEEcc-CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEE
Q psy18018        363 TSIRVWEAE-SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW  441 (635)
Q Consensus       363 g~i~v~~~~-~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~  441 (635)
                      +.|++||+. .++.+..+.+|...|.+++|+                               |++++|++++.|++|++|
T Consensus       228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-------------------------------p~~~~l~s~s~D~~i~lw  276 (380)
T 3iz6_a          228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFF-------------------------------PDGQRFGTGSDDGTCRLF  276 (380)
T ss_dssp             SCEEEEETTTTCCCCEEECCCSSCCCEEEEC-------------------------------TTSSEEEEECSSSCEEEE
T ss_pred             CeEEEEECCCCCcceEEECCcCCCeEEEEEe-------------------------------cCCCeEEEEcCCCeEEEE
Confidence            777777765 345667788999999999986                               334444455555555555


Q ss_pred             eCCCCceeeeeccC-------CccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecC-CCcccccEEEEEe--cC
Q psy18018        442 EAESGNLRHTLMGH-------QSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSG-RNKHQSAVTCLQF--NS  509 (635)
Q Consensus       442 d~~~~~~~~~~~~~-------~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~--~~  509 (635)
                      |+++++.+..+..+       ...+.+++|  +++++++|+.||.|++||+..++.+..+.. ...|...|.+++|  ++
T Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            55555544444332       223666666  678999999999999999999988877732 2348899999999  68


Q ss_pred             CEEEEEeCCCcEEEEECCCCc
Q psy18018        510 RFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       510 ~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      ++|++|+.|++|++|++...+
T Consensus       357 ~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          357 SALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SEEEEECTTSCEEEEECCSSS
T ss_pred             CEEEEeeCCCCEEEEecCCCc
Confidence            999999999999999998654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-37  Score=302.46  Aligned_cols=291  Identities=24%  Similarity=0.423  Sum_probs=229.8

Q ss_pred             cccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcc-----------------eE
Q psy18018         22 KGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDH-----------------VI   84 (635)
Q Consensus        22 ~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~-----------------vi   84 (635)
                      .+|.+.| +|++||    |||++||+++.         ..+.+|+..+++.+..+.+|...                 .|
T Consensus        61 ~~h~~~V-~~v~fs----pdg~~la~g~~---------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v  126 (393)
T 1erj_A           61 LDHTSVV-CCVKFS----NDGEYLATGCN---------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI  126 (393)
T ss_dssp             EECSSCC-CEEEEC----TTSSEEEEECB---------SCEEEEETTTCCEEEEECC-----------------CCCCBE
T ss_pred             cCCCCEE-EEEEEC----CCCCEEEEEcC---------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeE
Confidence            3799999 999999    99999999863         23456999999988888776532                 14


Q ss_pred             EEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC
Q psy18018         85 TCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY  160 (635)
Q Consensus        85 ~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~  160 (635)
                      ++++|+  +++||+|+.|++|++||+.+                     ++.+..+.+|...|.+++|  ++++|++++.
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  185 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSG  185 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCC---------------------CcEEEEEccCCCCEEEEEEcCCCCEEEEecC
Confidence            899999  89999999999888888764                     4566788899999999999  8999999999


Q ss_pred             CCeEEEEeCCCccceeeccccceeEEeeecc-CCCEEEEEeCCCcEEEEECCCCeEEEEE-------eCCCCCeEEEEee
Q psy18018        161 DYMVKIWNPDTEECLHAELQETEVELSHGYA-LRSRIVSGSDDNTLKVWSATTGKCLRTL-------IGHTGGVWSSQMA  232 (635)
Q Consensus       161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~  232 (635)
                      |++|++||+.+++....+.....+......+ ++.++++++.|+.|++||+.+++.+..+       .+|...|.+++|+
T Consensus       186 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  265 (393)
T 1erj_A          186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  265 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence            9999999999998877776666666666666 6789999999999999999999888776       5788999999984


Q ss_pred             --CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        233 --GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       233 --~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                        +++|++++.||.|++||+.......                                                     
T Consensus       266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~-----------------------------------------------------  292 (393)
T 1erj_A          266 RDGQSVVSGSLDRSVKLWNLQNANNKS-----------------------------------------------------  292 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEEC------------------------------------------------------------
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCCcc-----------------------------------------------------
Confidence              7788999999999999875421100                                                     


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                              .               .-....+.+...+.+|...|.+++
T Consensus       293 ----------------------------------------~---------------~~~~~~~~~~~~~~~h~~~v~~~~  317 (393)
T 1erj_A          293 ----------------------------------------D---------------SKTPNSGTCEVTYIGHKDFVLSVA  317 (393)
T ss_dssp             ---------------------------------------------------------------CEEEEEECCSSCEEEEE
T ss_pred             ----------------------------------------c---------------ccCCCCCcceEEEecccCcEEEEE
Confidence                                                    0               000012334456677888888777


Q ss_pred             EeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-----
Q psy18018        391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-----  465 (635)
Q Consensus       391 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----  465 (635)
                      ++                               +++.+|++++.|+.|++||..+++.+..+.+|...|.++++.     
T Consensus       318 ~~-------------------------------~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          318 TT-------------------------------QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             EC-------------------------------GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             EC-------------------------------CCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence            65                               566678888888888889988899999999999999999874     


Q ss_pred             ---CCEEEEEeCCCcEEEEECCCC
Q psy18018        466 ---NNILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       466 ---~~~l~s~~~dg~i~iwd~~~~  486 (635)
                         +++|++|+.||+|++|++...
T Consensus       367 ~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          367 GPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCEEEEECCCCcEEECccccc
Confidence               468999999999999997643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.4e-37  Score=292.59  Aligned_cols=230  Identities=18%  Similarity=0.303  Sum_probs=172.9

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      |+|++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+  ++.|++++.|+.|++||                 
T Consensus        84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd-----------------  146 (343)
T 2xzm_R           84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN-----------------  146 (343)
T ss_dssp             ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE-----------------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe-----------------
Confidence            66677788888888889999988888888999999999999986  33555555555555554                 


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeee---eccCCccEEEEEecC------------CEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHT---LMGHQSLTSGMELRN------------NILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~~~------------~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                                      +... ....   ..+|...+.++.+++            .++++++.|+.|++||. ..+....
T Consensus       147 ----------------~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~  208 (343)
T 2xzm_R          147 ----------------ILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYT  208 (343)
T ss_dssp             ----------------SSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEE
T ss_pred             ----------------ccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEE
Confidence                            4321 1111   236778888888753            58999999999999994 4666667


Q ss_pred             ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      +..   |...|.+++|  ++++|++++.|+.|++||+........           ...+...|.+++|+|++++++++ 
T Consensus       209 ~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~-----------~~~~~~~v~~v~~sp~~~~la~~-  273 (343)
T 2xzm_R          209 FKA---HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-----------EFDAGSTINQIAFNPKLQWVAVG-  273 (343)
T ss_dssp             EEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE-----------EEECSSCEEEEEECSSSCEEEEE-
T ss_pred             EcC---ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce-----------eecCCCcEEEEEECCCCCEEEEE-
Confidence            776   8899999999  689999999999999999954331111           11245679999999999988765 


Q ss_pred             CCCeEEEEeCCCCceEE--eeeec------cCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        570 DDGTVKLWDVKTGEFIR--NLVSL------DSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~--~~~~~------~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      .|+.|++||+.+++...  .+...      ...+|...|.+++|+|+|++|++|+.||.  +++|.++-
T Consensus       274 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~--v~~w~~~~  340 (343)
T 2xzm_R          274 TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV--IRTFSFET  340 (343)
T ss_dssp             ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE--EEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce--EEEEEEEc
Confidence            57789999998876543  33210      01257788999999999999999999998  56665543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.9e-36  Score=283.76  Aligned_cols=230  Identities=28%  Similarity=0.546  Sum_probs=192.2

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      |+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+                               |++++
T Consensus        73 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-------------------------------~~~~~  121 (312)
T 4ery_A           73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-------------------------------PQSNL  121 (312)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-------------------------------SSSSE
T ss_pred             EcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-------------------------------CCCCE
Confidence            66777888888888888889888888888899999988888875                               55667


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ  506 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  506 (635)
                      +++++.|+.|++||+++++.+..+..|...+.++.++  ++++++++.|+.|++||+.+++.+..+..  .+...+.+++
T Consensus       122 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~  199 (312)
T 4ery_A          122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVK  199 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEE
Confidence            7888888888888888888888999999999999884  66999999999999999999988877643  2566788888


Q ss_pred             e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceec--ccc-cCCCeEEEEecCCCeEEEEeCCC
Q psy18018        507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC--PHL-QFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      |  ++++|++++.|+.|++||+++++....+..+           .....+  ..+ .+++++|++|+.||.|++||+.+
T Consensus       200 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-----------KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS-----------CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec-----------CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence            8  6899999999999999999999877766543           222222  223 36789999999999999999999


Q ss_pred             CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc--CCCeeEeEEEEEe
Q psy18018        582 GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS--RNGTEETKLLVLD  629 (635)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~--~dg~~~~~l~~~d  629 (635)
                      ++.+..+     .+|.+.|.+++|+|++.+|++++  .|+.  +++|..|
T Consensus       269 ~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~--i~~W~~d  311 (312)
T 4ery_A          269 KEIVQKL-----QGHTDVVISTACHPTENIIASAALENDKT--IKLWKSD  311 (312)
T ss_dssp             CCEEEEE-----CCCSSCEEEEEECSSSSEEEEEECTTTCC--EEEEECC
T ss_pred             chhhhhh-----hccCCcEEEEeecCcCCceEEEEccCCcc--EEEecCC
Confidence            9999888     58899999999999999999987  5787  6777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.1e-36  Score=288.57  Aligned_cols=318  Identities=18%  Similarity=0.286  Sum_probs=247.1

Q ss_pred             cccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCC
Q psy18018         24 HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDN  101 (635)
Q Consensus        24 h~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~  101 (635)
                      |.++| .+++||    |||+++|.+.....+        ..|+...........+|.+.+ ++++|+  +++|++++ ||
T Consensus         8 ~~~~v-~~~~~s----~dg~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~-dg   72 (337)
T 1gxr_A            8 GSKPA-YSFHVT----ADGQMQPVPFPPDAL--------IGPGIPRHARQINTLNHGEVV-CAVTISNPTRHVYTGG-KG   72 (337)
T ss_dssp             EEEEC-CEEEEC----SSSCEEECCCCTTSS--------SSTTCCSEEEEEEEECCSSCC-CEEEECSSSSEEEEEC-BS
T ss_pred             cCCce-eEEEEC----CCCCEEEeecCCCcE--------eccccCCccccceeccCCCce-EEEEEecCCcEEEEcC-CC
Confidence            45567 899999    999999988754332        236555444444555898888 999999  88999998 99


Q ss_pred             cEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee--CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee
Q psy18018        102 TLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV--GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA  177 (635)
Q Consensus       102 ~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~--~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~  177 (635)
                      .|++||+.+++.                  ......+.  +|...|.+++|  ++++|++++.||.|++||+.+++.   
T Consensus        73 ~i~iw~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---  131 (337)
T 1gxr_A           73 CVKVWDISHPGN------------------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---  131 (337)
T ss_dssp             EEEEEETTSTTC------------------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----
T ss_pred             eEEEEECCCCCc------------------eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---
Confidence            999999986541                  12233333  79999999999  788888888888888888654321   


Q ss_pred             ccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeec
Q psy18018        178 ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAI  257 (635)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~  257 (635)
                                                          .....+..|...|.+++                           
T Consensus       132 ------------------------------------~~~~~~~~~~~~i~~~~---------------------------  148 (337)
T 1gxr_A          132 ------------------------------------RIKAELTSSAPACYALA---------------------------  148 (337)
T ss_dssp             ------------------------------------EEEEEEECSSSCEEEEE---------------------------
T ss_pred             ------------------------------------ceeeecccCCCceEEEE---------------------------
Confidence                                                12344556666666655                           


Q ss_pred             cccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcc
Q psy18018        258 GQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHR  337 (635)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (635)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (337)
T 1gxr_A          149 --------------------------------------------------------------------------------  148 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCccee
Q psy18018        338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKL  417 (635)
Q Consensus       338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~  417 (635)
                                 ++|+++++++++.+|.|++||+.+++.+..+..|...+.+++++                         
T Consensus       149 -----------~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-------------------------  192 (337)
T 1gxr_A          149 -----------ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-------------------------  192 (337)
T ss_dssp             -----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-------------------------
T ss_pred             -----------ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC-------------------------
Confidence                       66677788888888889999988888888888899999988886                         


Q ss_pred             EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018        418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  495 (635)
                            |+++++++++.|+.|++||+++++....+. +...+.++.+  +++++++++.|+.|++||+.+++.. .+.. 
T Consensus       193 ------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~-  263 (337)
T 1gxr_A          193 ------NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL-  263 (337)
T ss_dssp             ------TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC-
T ss_pred             ------CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC-
Confidence                  445566666667777777777766666554 6677888887  4679999999999999999988754 4444 


Q ss_pred             CcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe
Q psy18018        496 NKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT  573 (635)
Q Consensus       496 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  573 (635)
                        |...|.+++|  ++++|++++.||.|++||+++++.....            .|...+.+++|+|++++|++++.||.
T Consensus       264 --~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~dg~  329 (337)
T 1gxr_A          264 --HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             --CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------------cCCCcEEEEEECCCCCEEEEecCCCe
Confidence              8889999999  5899999999999999999998765322            36788999999999999999999999


Q ss_pred             EEEEeC
Q psy18018        574 VKLWDV  579 (635)
Q Consensus       574 v~iwd~  579 (635)
                      |++||+
T Consensus       330 i~iw~~  335 (337)
T 1gxr_A          330 ATVYEV  335 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.3e-36  Score=282.81  Aligned_cols=288  Identities=29%  Similarity=0.574  Sum_probs=227.3

Q ss_pred             CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC  147 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~  147 (635)
                      .....++.+|.+.| ++++|+  +++||+++.|+.|++|++.+                     ++....+.+|...|.+
T Consensus        13 ~~~~~~~~gh~~~v-~~~~~s~~~~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~h~~~v~~   70 (312)
T 4ery_A           13 YALKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYD---------------------GKFEKTISGHKLGISD   70 (312)
T ss_dssp             CEEEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEE
T ss_pred             ceeEEEEcccCCcE-EEEEECCCCCEEEEeeCCCeEEEEeCCC---------------------cccchhhccCCCceEE
Confidence            34556788999988 999999  89999999999999988764                     4556678899999999


Q ss_pred             EEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018        148 VQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG  225 (635)
Q Consensus       148 l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  225 (635)
                      ++|  ++++|++++.|+.|++||+.+                                         ++++..+.+|...
T Consensus        71 ~~~~~~~~~l~s~~~d~~i~vwd~~~-----------------------------------------~~~~~~~~~~~~~  109 (312)
T 4ery_A           71 VAWSSDSNLLVSASDDKTLKIWDVSS-----------------------------------------GKCLKTLKGHSNY  109 (312)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTT-----------------------------------------CCEEEEEECCSSC
T ss_pred             EEEcCCCCEEEEECCCCEEEEEECCC-----------------------------------------CcEEEEEcCCCCC
Confidence            999  778888888777777776543                                         4445566678777


Q ss_pred             eEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhh
Q psy18018        226 VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL  305 (635)
Q Consensus       226 v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (635)
                      |.++.                                                                           
T Consensus       110 v~~~~---------------------------------------------------------------------------  114 (312)
T 4ery_A          110 VFCCN---------------------------------------------------------------------------  114 (312)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             EEEEE---------------------------------------------------------------------------
Confidence            76655                                                                           


Q ss_pred             HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc
Q psy18018        306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL  385 (635)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~  385 (635)
                                                                 |+|+++++++|+.|+.|++||+.+++.+..+..|...
T Consensus       115 -------------------------------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  151 (312)
T 4ery_A          115 -------------------------------------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP  151 (312)
T ss_dssp             -------------------------------------------ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             -------------------------------------------EcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence                                                       6667778888888889999998888888888899999


Q ss_pred             eeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec-cCCccEEEEEe
Q psy18018        386 TSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMEL  464 (635)
Q Consensus       386 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~  464 (635)
                      |.+++++                               ++++++++++.|+.|++||+.+++.+..+. .+...+..+.+
T Consensus       152 v~~~~~~-------------------------------~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  200 (312)
T 4ery_A          152 VSAVHFN-------------------------------RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF  200 (312)
T ss_dssp             EEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEE
T ss_pred             EEEEEEc-------------------------------CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEE
Confidence            9888876                               445566666667777777777766665554 35567777777


Q ss_pred             --cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE-EEe-cCCEEEEEeCCCcEEEEECCCCceeeeecccee
Q psy18018        465 --RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC-LQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI  540 (635)
Q Consensus       465 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  540 (635)
                        +++++++++.|+.|++||+.+++.+..+..+......+.. ... ++.+|++++.||.|++||+++++.+..+..   
T Consensus       201 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---  277 (312)
T 4ery_A          201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG---  277 (312)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC---
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc---
Confidence              4679999999999999999999998888773322222222 222 588999999999999999999988777654   


Q ss_pred             cCceeEEeccCceecccccCCCeEEEEec--CCCeEEEEeCC
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVITSS--DDGTVKLWDVK  580 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~v~iwd~~  580 (635)
                              |...|.+++|+|++++|++++  .|++|++|+..
T Consensus       278 --------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          278 --------HTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             --------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             --------cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence                    688999999999999999986  69999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-36  Score=291.19  Aligned_cols=309  Identities=18%  Similarity=0.299  Sum_probs=219.5

Q ss_pred             CCCceeeccCcceEEEEEE-----c---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCC
Q psy18018         71 KDPKVLKGHDDHVITCLQF-----S---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL  142 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~-----s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~  142 (635)
                      ++...|++|.+.| ++++|     +   +++||||+.|++|++||+.+++..              ...+++...+.+|.
T Consensus        12 ~~~~~l~gH~~~V-~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------~~~~~~~~~l~~h~   76 (343)
T 2xzm_R           12 VKRGILEGHSDWV-TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------GYFGIPHKALTGHN   76 (343)
T ss_dssp             EEEEEEECCSSCE-EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------SBSEEEEEEECCCS
T ss_pred             eeeeeeccchhhh-hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------cccccccchhccCC
Confidence            4456799999998 99999     3   789999999999999998754310              01245677889999


Q ss_pred             cceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy18018        143 AAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI  220 (635)
Q Consensus       143 ~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  220 (635)
                      ..|.+++|  ++.++++++.|++|++||+.                                         +++.+..+.
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~-----------------------------------------~~~~~~~~~  115 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLR-----------------------------------------TGTTYKRFV  115 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETT-----------------------------------------SSCEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECC-----------------------------------------CCcEEEEEc
Confidence            99999999  77788888877777777654                                         344556677


Q ss_pred             CCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018        221 GHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT  298 (635)
Q Consensus       221 ~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (635)
                      +|...|.+++|+  +++|++++.|++|++||                                                 
T Consensus       116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd-------------------------------------------------  146 (343)
T 2xzm_R          116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWN-------------------------------------------------  146 (343)
T ss_dssp             CCCSCEEEEEECSSTTEEEEEETTSCEEEEE-------------------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe-------------------------------------------------
Confidence            899999988853  44555555555555555                                                 


Q ss_pred             ecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEe
Q psy18018        299 FLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT  378 (635)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~  378 (635)
                                                                                             +.. .....
T Consensus       147 -----------------------------------------------------------------------~~~-~~~~~  154 (343)
T 2xzm_R          147 -----------------------------------------------------------------------ILG-ECKFS  154 (343)
T ss_dssp             -----------------------------------------------------------------------SSS-CEEEE
T ss_pred             -----------------------------------------------------------------------ccC-Cceee
Confidence                                                                                   331 11111


Q ss_pred             e---eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC
Q psy18018        379 L---MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH  455 (635)
Q Consensus       379 ~---~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  455 (635)
                      .   ..|...+.+++|++..-     .          .      ....|.+.++++++.|+.|++|| .+.+....+.+|
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~-----~----------~------~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h  212 (343)
T 2xzm_R          155 SAEKENHSDWVSCVRYSPIMK-----S----------A------NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAH  212 (343)
T ss_dssp             CCTTTSCSSCEEEEEECCCCC-----S----------C------SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECC
T ss_pred             eecccCCCceeeeeeeccccc-----c----------c------cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCc
Confidence            1   25677788888764210     0          0      00134567889999999999999 456777788999


Q ss_pred             CccEEEEEec--CCEEEEEeCCCcEEEEECCC-CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        456 QSLTSGMELR--NNILVSGNADSTVKVWDIVS-GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       456 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      ...|.+++++  +++|++++.|+.|++||+.. ......+.    +...|.+++|  ++.+++ ++.|+.|++|++.+++
T Consensus       213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD----AGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE----CSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCC
T ss_pred             cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec----CCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCC
Confidence            9999999984  66999999999999999943 44444443    4456999999  466665 4567889999998876


Q ss_pred             eee--eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCc
Q psy18018        531 FST--PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE  583 (635)
Q Consensus       531 ~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~  583 (635)
                      ...  .+.............|...|++++|+|++++|++|+.||.|++||+++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            543  22211000000112467789999999999999999999999999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-37  Score=289.42  Aligned_cols=300  Identities=20%  Similarity=0.329  Sum_probs=214.7

Q ss_pred             CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                      .+.+++.++.+|.++|+++.|++++|++++.|++|++|++.........                               
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~-------------------------------   50 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID-------------------------------   50 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE-------------------------------
T ss_pred             cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE-------------------------------
Confidence            4567788999999999999999889999999999999998653110000                               


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA  370 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~  370 (635)
                                                                 .+....+......++|+|++++|++|+.|+.|++|+.
T Consensus        51 -------------------------------------------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~   87 (330)
T 2hes_X           51 -------------------------------------------VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK   87 (330)
T ss_dssp             -------------------------------------------EECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             -------------------------------------------EEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence                                                       0000112234556789999999999999999999998


Q ss_pred             cC-------CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC
Q psy18018        371 ES-------GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA  443 (635)
Q Consensus       371 ~~-------~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  443 (635)
                      ..       .+.+..+.+|...|.+++|+                               |++++|++++.|++|++||+
T Consensus        88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------------------------------p~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           88 EESADRTFEMDLLAIIEGHENEVKGVAWS-------------------------------NDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             -------CCCEEEEEEC----CEEEEEEC-------------------------------TTSCEEEEEETTSCEEEEEC
T ss_pred             ccCcCccccceeEEEEcCCCCcEEEEEEC-------------------------------CCCCEEEEEeCCCEEEEEec
Confidence            53       34567788999999999886                               34445555555555555555


Q ss_pred             CC----CceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC--ceeEEecCCCcccccEEEEEec----CCE
Q psy18018        444 ES----GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQFN----SRF  511 (635)
Q Consensus       444 ~~----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~----~~~  511 (635)
                      ..    .+.+..+.+|...|.++.|+  +++|++++.|++|++||..++  +++..+.+   |...|.+++|+    +.+
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCSSSSCE
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecCCCCeeE
Confidence            22    24567788999999999985  569999999999999998766  56777776   89999999994    458


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce--EEeee
Q psy18018        512 VITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF--IRNLV  589 (635)
Q Consensus       512 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~  589 (635)
                      |++++.|++|++||+..+........  .........|...|.+++|++++ +|++++.||+|+|||..+++.  +....
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~  290 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEW--VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA  290 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEE--EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES
T ss_pred             EEEEeCCCeEEEEEecCCCcccccee--EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc
Confidence            99999999999999876421100000  00000001278899999999765 889999999999999988743  22221


Q ss_pred             eccCCCCCc-eEEEEEeCC--CCeEEEEccCCCeeEeEEEE
Q psy18018        590 SLDSGGSGG-VVWRIRASE--TKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       590 ~~~~~~~~~-~i~~l~~s~--d~~~l~~~~~dg~~~~~l~~  627 (635)
                          .+|.. .|.+++|+|  ++++|++|+.||+  ++||.
T Consensus       291 ----~~h~~~~v~~v~~~~~~~~~~las~s~Dg~--v~~W~  325 (330)
T 2hes_X          291 ----LCHGVYEINVVKWLELNGKTILATGGDDGI--VNFWS  325 (330)
T ss_dssp             ----CTTTTSCEEEEEEC-----CCEEEEETTSE--EEEEE
T ss_pred             ----cccccceEEEEEEecCCCceEEEEecCCCc--EEEEE
Confidence                35666 899999999  7999999999998  44543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-38  Score=310.52  Aligned_cols=366  Identities=15%  Similarity=0.192  Sum_probs=259.7

Q ss_pred             cccceEEEEEecCCCCCCCc-eeecCCcch--heeeccceeeeeeecCCCC---CCceeeccCcceEEEEEEc--CCEEE
Q psy18018         24 HDDHVITCLQFSGKSFPCES-FIRSSSPWK--ALFMSHRSVEINWRTRPIK---DPKVLKGHDDHVITCLQFS--GSRIV   95 (635)
Q Consensus        24 h~~~vi~~~~~s~~~~~~~~-~la~~~~~~--~~~~~~~~~~~iwd~~~~~---~~~~l~~h~~~vi~~~~~s--~~~l~   95 (635)
                      +...| ++++||    |+|+ ++|++...+  .+..+.+..+.+||..+++   .+..+ .|...+ ++++|+  +++|+
T Consensus        11 ~~~~v-~~~~~s----p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v-~~~~~s~~~~~l~   83 (416)
T 2pm9_A           11 EFSRT-ATFAWS----HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKF-NDLDWSHNNKIIA   83 (416)
T ss_dssp             EEEES-CBCCBC----SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCE-EEEEECSSSSCEE
T ss_pred             hhhhc-ceEeeC----CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCce-EEEEECCCCCeEE
Confidence            34566 899999    8887 999984322  1112345667789999876   33333 577777 999999  89999


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCCc
Q psy18018         96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      +++.|+.|++||+.+..                 ...+.+..+.+|...|++++|  + +++|++++.||+|++||+.++
T Consensus        84 ~~~~dg~v~vw~~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           84 GALDNGSLELYSTNEAN-----------------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             EEESSSCEEEECCSSTT-----------------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             EEccCCeEEEeeccccc-----------------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999987521                 113467888899999999999  5 889999999999999999988


Q ss_pred             c------ceeec---cccc-eeEEeeeccC-CCEEEEEeCCCcEEEEECCCCeEEEEEeCC------CCCeEEEEeeCCE
Q psy18018        173 E------CLHAE---LQET-EVELSHGYAL-RSRIVSGSDDNTLKVWSATTGKCLRTLIGH------TGGVWSSQMAGNI  235 (635)
Q Consensus       173 ~------~~~~~---~~~~-~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~  235 (635)
                      +      .....   ..+. .+......+. +..+++++.|+.|++||+.+++.+..+..|      ...|.+++     
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-----  221 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE-----  221 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE-----
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE-----
Confidence            6      33222   2333 3333444444 578999999999999999999888887765      34444444     


Q ss_pred             EEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccce
Q psy18018        236 IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW  315 (635)
Q Consensus       236 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (635)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (416)
T 2pm9_A          222 --------------------------------------------------------------------------------  221 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEeecCCcchhhhhhhhhhhccccccCCCceEEEEecC-cEEEEecCCC---eEEEEEccCC-ceEEeee-CCCcceeEE
Q psy18018        316 RFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG-VHVVSGSLDT---SIRVWEAESG-NLRHTLM-GHQSLTSGM  389 (635)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg---~i~v~~~~~~-~~~~~~~-~~~~~v~~l  389 (635)
                                                       |+|++ .++++++.++   .|++||+.++ ..+..+. +|...|.++
T Consensus       222 ---------------------------------~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  268 (416)
T 2pm9_A          222 ---------------------------------WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL  268 (416)
T ss_dssp             ---------------------------------ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred             ---------------------------------ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence                                             66665 5677777777   8888888875 5566677 888899988


Q ss_pred             EEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee-CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C
Q psy18018        390 ELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N  466 (635)
Q Consensus       390 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~  466 (635)
                      +|+                               | ++++|++++.|+.|++||+.+++.+..+.+|...|.+++++  +
T Consensus       269 ~~s-------------------------------~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          269 DWC-------------------------------HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             EEC-------------------------------SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred             EeC-------------------------------CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence            886                               3 56678888888888899988899999999999999999985  3


Q ss_pred             -CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCce
Q psy18018        467 -NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF  544 (635)
Q Consensus       467 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  544 (635)
                       .++++++.|+.|++||+.+.+...................+ .+..++.++..+.+.+   ..      .         
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~---------  379 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL---QA------P---------  379 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC---CC------C---------
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc---cC------C---------
Confidence             69999999999999999876643332210000000111111 2333333332221111   00      0         


Q ss_pred             eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                        ..|..++.+++|+|||++|++++.|+.|+||++.+.
T Consensus       380 --~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          380 --TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             --STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             --ccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence              015667889999999999999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=288.33  Aligned_cols=304  Identities=21%  Similarity=0.303  Sum_probs=216.7

Q ss_pred             CeEEEEeeCCCc-ceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee---ccccc-eeEEeeeccCCCEEEEEeCCCc
Q psy18018        132 GECLHVLVGHLA-AVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA---ELQET-EVELSHGYALRSRIVSGSDDNT  204 (635)
Q Consensus       132 ~~~~~~l~~h~~-~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~-~~~~~~~~~~~~~l~~~~~dg~  204 (635)
                      .+++..+.+|.. .|.+++|  ++++||+++.|++|++||+.+++....   ...+. .+....+.+++.+|++++.|+.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            356788999988 9999999  899999999999999999988754322   23333 4445555567889999999999


Q ss_pred             EEEEECCCC--eEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018        205 LKVWSATTG--KCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR  282 (635)
Q Consensus       205 i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (635)
                      +++||..++  +++..+.+|...|.+++|                                                   
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~---------------------------------------------------  113 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAW---------------------------------------------------  113 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEE---------------------------------------------------
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEE---------------------------------------------------
Confidence            999998876  467788899999988885                                                   


Q ss_pred             ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018        283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD  362 (635)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  362 (635)
                                                                                         +|++++|++|+.|
T Consensus       114 -------------------------------------------------------------------sp~~~~l~s~s~D  126 (345)
T 3fm0_A          114 -------------------------------------------------------------------APSGNLLATCSRD  126 (345)
T ss_dssp             -------------------------------------------------------------------CTTSSEEEEEETT
T ss_pred             -------------------------------------------------------------------eCCCCEEEEEECC
Confidence                                                                               4444445555555


Q ss_pred             CeEEEEEccCC---ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018        363 TSIRVWEAESG---NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR  439 (635)
Q Consensus       363 g~i~v~~~~~~---~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  439 (635)
                      +.|++||+.++   ..+..+.+|...|.+++|+                               |++++|++++.|+.|+
T Consensus       127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~-------------------------------p~~~~l~s~s~d~~i~  175 (345)
T 3fm0_A          127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH-------------------------------PSQELLASASYDDTVK  175 (345)
T ss_dssp             SCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC-------------------------------SSSSCEEEEETTSCEE
T ss_pred             CeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC-------------------------------CCCCEEEEEeCCCcEE
Confidence            55555554433   2345567788888888876                               3445555666666666


Q ss_pred             EEeCCCCc--eeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC---------------ceeEEecCCCcccc
Q psy18018        440 VWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG---------------QCLQTLSGRNKHQS  500 (635)
Q Consensus       440 ~~d~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~~~  500 (635)
                      +||..+++  ....+.+|...|.+++|+  +++|++++.|++|++||....               +++..+.+  .|..
T Consensus       176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  253 (345)
T 3fm0_A          176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG--FHSR  253 (345)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS--SCSS
T ss_pred             EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC--CCCC
Confidence            66665553  346788999999999985  669999999999999996321               22233332  2778


Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCCeEEEE
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDGTVKLW  577 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~v~iw  577 (635)
                      .|.+++|  ++..|++++.|+.|++|+...+.........  ........|...|++++|+|++ .+||+|+.||+|++|
T Consensus       254 ~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS--LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE--EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE--EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence            8999999  5889999999999999998765421110000  0000012478899999999998 599999999999999


Q ss_pred             eCCCCceEEee
Q psy18018        578 DVKTGEFIRNL  588 (635)
Q Consensus       578 d~~~~~~~~~~  588 (635)
                      ++.+++.+...
T Consensus       332 ~~~~~~~~~~~  342 (345)
T 3fm0_A          332 KYQRPEGLHHH  342 (345)
T ss_dssp             EECC-------
T ss_pred             EecCCCCcccc
Confidence            99988876554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-36  Score=299.88  Aligned_cols=343  Identities=17%  Similarity=0.215  Sum_probs=237.4

Q ss_pred             eEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy18018        145 VRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGH  222 (635)
Q Consensus       145 v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  222 (635)
                      +++++|  ++++|++++.||.|++||+.+++....+..+.........+++.+|++++.||.|++||+.+++....+.+|
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  138 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH  138 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence            446777  899999999999999999999887776666655555555667889999999999999999999998888899


Q ss_pred             CCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018        223 TGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL  300 (635)
Q Consensus       223 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (635)
                      ...|.+++|+  +++|++++.|+.|++||+.+....                                            
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--------------------------------------------  174 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--------------------------------------------  174 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--------------------------------------------
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--------------------------------------------
Confidence            9999998863  455666666666666655432110                                            


Q ss_pred             CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec--CcEEEEecCCCeEEEEEccCCceEEe
Q psy18018        301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLRHT  378 (635)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~  378 (635)
                                                          .....|...+.++...  +++|++++.||.|++||+.+++.+..
T Consensus       175 ------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          175 ------------------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             ------------------------------------EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ------------------------------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence                                                0001123333444444  33455555555555555555555555


Q ss_pred             eeCCC---cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec-c
Q psy18018        379 LMGHQ---SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-G  454 (635)
Q Consensus       379 ~~~~~---~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~  454 (635)
                      +..|.   ..+.++++.+.      .+..+  ...  .........++|+++++++++.||.|++||+.+++....+. .
T Consensus       219 ~~~~~~~~~~v~~~~~~~~------~~~~~--~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          219 FNRKENPHDGVNSIALFVG------TDRQL--HEI--STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ECBTTBTTCCEEEEEEEEC------CCSSC--GGG--CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             eecCCCCCCCccEEEEecC------Cccee--eec--ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence            55532   23333333200      00000  000  00000111256899999999999999999999988777765 4


Q ss_pred             CCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCce-eEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCC
Q psy18018        455 HQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTG  529 (635)
Q Consensus       455 ~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~  529 (635)
                      |...+.++++++  . ++++++.||.|++||+++++. +..+..+  +...+.++.+ ++++|++++.|+.|++|++...
T Consensus       289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--EGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--TTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--CCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            788999999964  4 999999999999999998754 5555542  5677888877 6889999999999999999875


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCe---EEEEecCCCeEEEEeCCC
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR---FVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~v~iwd~~~  581 (635)
                      ........  ...+.....|...|.+++|+|+++   .+++++.+|.+.+|+++.
T Consensus       367 ~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          367 ESERPAIE--FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TCCSCEEC--TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCCcccee--ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            43322211  122334556788999999999999   677777899999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.7e-36  Score=286.11  Aligned_cols=301  Identities=23%  Similarity=0.346  Sum_probs=226.9

Q ss_pred             CCCeEEEEeeCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCCccc-----eeeccccce-eEEeeeccCCCEEEEEe
Q psy18018        130 ESGECLHVLVGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDTEEC-----LHAELQETE-VELSHGYALRSRIVSGS  200 (635)
Q Consensus       130 ~~~~~~~~l~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~~~~  200 (635)
                      ++.++..+|+||.++|++|+|  + +++|+||+.||+|++||+.+.+.     ...+..+.. +....+.+++.+|++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            344566789999999999999  4 68999999999999999887543     334444444 44444456678899999


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccc
Q psy18018        201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF  280 (635)
Q Consensus       201 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (635)
                      .|+.|++|+............+...+....                                                  
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------  135 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVA--------------------------------------------------  135 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEE--------------------------------------------------
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEE--------------------------------------------------
Confidence            999999999888877777666665555444                                                  


Q ss_pred             ccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec
Q psy18018        281 QRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS  360 (635)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  360 (635)
                                                                                          +++++.++++++
T Consensus       136 --------------------------------------------------------------------~~~~~~~l~s~s  147 (340)
T 4aow_A          136 --------------------------------------------------------------------FSSDNRQIVSGS  147 (340)
T ss_dssp             --------------------------------------------------------------------ECTTSSCEEEEE
T ss_pred             --------------------------------------------------------------------EeecCccceeec
Confidence                                                                                344555566666


Q ss_pred             CCCeEEEEEccCCce-EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018        361 LDTSIRVWEAESGNL-RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR  439 (635)
Q Consensus       361 ~dg~i~v~~~~~~~~-~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  439 (635)
                      .|+.+++||...... .....+|...+..+++...                             +....+++++.|+.|+
T Consensus       148 ~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------~~~~~~~s~~~d~~i~  198 (340)
T 4aow_A          148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN-----------------------------SSNPIIVSCGWDKLVK  198 (340)
T ss_dssp             TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC-----------------------------SSSCEEEEEETTSCEE
T ss_pred             CCCeEEEEEeCCCceEEEEeccccCcccceEEccC-----------------------------CCCcEEEEEcCCCEEE
Confidence            666666666654332 2344567777777776521                             2334567777888888


Q ss_pred             EEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEe
Q psy18018        440 VWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSS  516 (635)
Q Consensus       440 ~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~  516 (635)
                      +||+.+++....+.+|...|.+++++  +++|++++.|+.|++||+.+.+.+..+.    +...+.++++ .+..+++++
T Consensus       199 i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~  274 (340)
T 4aow_A          199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRYWLCAA  274 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSSSEEEEE
T ss_pred             EEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeeecCCCCceeecc
Confidence            88888899999999999999999885  6799999999999999999999988887    4467888988 356677788


Q ss_pred             CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCc
Q psy18018        517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE  583 (635)
Q Consensus       517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~  583 (635)
                      .|+.|++||++++.....+....  .......|...|++++|+||+++|++|+.||.|+|||+++|+
T Consensus       275 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          275 TGPSIKIWDLEGKIIVDELKQEV--ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ETTEEEEEETTTTEEEEEECCC---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEECCCCeEEEeccccc--eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            89999999999888776665431  122334578899999999999999999999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-38  Score=308.46  Aligned_cols=329  Identities=13%  Similarity=0.168  Sum_probs=246.2

Q ss_pred             cceEEEEe--cCC-EEEEE----------eCCCeEEEEeCCCcc---ceeeccccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018        143 AAVRCVQY--DGK-LVVSG----------AYDYMVKIWNPDTEE---CLHAELQETEVELSHGYALRSRIVSGSDDNTLK  206 (635)
Q Consensus       143 ~~v~~l~~--~~~-~l~s~----------~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  206 (635)
                      ..|.+++|  +++ +|+++          +.|+.|++||+.+++   .+........+....+.+++.+|++++.||.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            46888889  665 89999          899999999999886   344444445566666667788999999999999


Q ss_pred             EEECCC----CeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccc
Q psy18018        207 VWSATT----GKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ  279 (635)
Q Consensus       207 vwd~~~----~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (635)
                      +||+.+    .+.+..+.+|...|.+++|+   +++|++++.||.|++||+.+.....                      
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----------------------  150 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP----------------------  150 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT----------------------
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc----------------------
Confidence            999987    45888888999999998874   5677777777777777765421000                      


Q ss_pred             cccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEe
Q psy18018        280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG  359 (635)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  359 (635)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (416)
T 2pm9_A          151 --------------------------------------------------------------------------------  150 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018        360 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR  439 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  439 (635)
                        . ..      ..........|...+.+++|+++                              .+..+++++.|+.|+
T Consensus       151 --~-~~------~~~~~~~~~~~~~~v~~~~~~~~------------------------------~~~~l~~~~~dg~v~  191 (416)
T 2pm9_A          151 --S-NY------TPLTPGQSMSSVDEVISLAWNQS------------------------------LAHVFASAGSSNFAS  191 (416)
T ss_dssp             --T-TC------CCBCCCCSCCSSCCCCEEEECSS------------------------------CTTEEEEESSSSCEE
T ss_pred             --c-cc------cccccccccCCCCCeeEEEeCCC------------------------------CCcEEEEEcCCCCEE
Confidence              0 00      00001123567888888888621                              134455556666666


Q ss_pred             EEeCCCCceeeeeccC------CccEEEEEecC---CEEEEEeCCC---cEEEEECCCC-ceeEEec-CCCcccccEEEE
Q psy18018        440 VWEAESGNLRHTLMGH------QSLTSGMELRN---NILVSGNADS---TVKVWDIVSG-QCLQTLS-GRNKHQSAVTCL  505 (635)
Q Consensus       440 ~~d~~~~~~~~~~~~~------~~~v~~~~~~~---~~l~s~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~  505 (635)
                      +||+++++.+..+..+      ...+.++.+++   .++++++.|+   .|++||++++ ++...+. .   |...|.++
T Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~~v~~~  268 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---HQKGILSL  268 (416)
T ss_dssp             EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---CSSCEEEE
T ss_pred             EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---ccCceeEE
Confidence            6666666666666655      78899999863   4899999999   9999999986 5556665 5   88899999


Q ss_pred             Ee---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCCeEEEEeCCC
Q psy18018        506 QF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       506 ~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~v~iwd~~~  581 (635)
                      +|   ++++|++++.|+.|++||+++++.+..+..           |...|++++|+|++ ++|++++.|+.|++||+.+
T Consensus       269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-----------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-----------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-----------CCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            99   578999999999999999999987766654           68899999999999 8999999999999999988


Q ss_pred             CceEEeeee------------------------------ccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        582 GEFIRNLVS------------------------------LDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       582 ~~~~~~~~~------------------------------~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      ++.......                              ..+..+..++.+++|+|||++|++++.||.  ++||.+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~--v~~w~~  412 (416)
T 2pm9_A          338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG--VSITNP  412 (416)
T ss_dssp             CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC--BCCBCC
T ss_pred             CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCe--EEEEEe
Confidence            764322110                              001125678889999999999999999998  455443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=289.12  Aligned_cols=203  Identities=26%  Similarity=0.395  Sum_probs=166.3

Q ss_pred             CCCCcccccccc-ceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCc---eeeccCcceEEEEEEc
Q psy18018         15 IKDPKVLKGHDD-HVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPK---VLKGHDDHVITCLQFS   90 (635)
Q Consensus        15 ~~~~~~l~gh~~-~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~---~l~~h~~~vi~~~~~s   90 (635)
                      +...+.|.||.+ .| .+++||    |+|++||+++.++.+        .+||..+++...   ...+|.+.| .+++|+
T Consensus         5 ~~~~~~~~~h~~~~v-~~l~~s----p~g~~las~~~D~~i--------~iw~~~~~~~~~~~~~~~~h~~~v-~~~~~s   70 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRC-WFLAWN----PAGTLLASCGGDRRI--------RIWGTEGDSWICKSVLSEGHQRTV-RKVAWS   70 (345)
T ss_dssp             EEEEEEECCSTTSCE-EEEEEC----TTSSCEEEEETTSCE--------EEEEEETTEEEEEEEECSSCSSCE-EEEEEC
T ss_pred             EEEeeeecCCCCCcE-EEEEEC----CCCCEEEEEcCCCeE--------EEEEcCCCcceeeeeeccccCCcE-EEEEEC
Confidence            344578899998 77 899999    999999999875544        469998875432   236899988 999999


Q ss_pred             --CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEE
Q psy18018         91 --GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKI  166 (635)
Q Consensus        91 --~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~i  166 (635)
                        +++||+|+.|++|++||+.++.                   .+++..+.+|..+|.+++|  ++++|++++.|++|++
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~i  131 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDD-------------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV  131 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC--------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCCEEEEEECCCcEEEEEccCCC-------------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEE
Confidence              9999999999999999976442                   2456788899999999999  8999999999999999


Q ss_pred             EeCCCccc---eeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCCCeEEEEee--CCEEEE
Q psy18018        167 WNPDTEEC---LHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGK--CLRTLIGHTGGVWSSQMA--GNIIIS  238 (635)
Q Consensus       167 wd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s  238 (635)
                      ||+.++..   +..+..+.. +......+.+.+|++++.|+.|++||..+++  +..++.+|...|++++|+  +++|++
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s  211 (345)
T 3fm0_A          132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS  211 (345)
T ss_dssp             EEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence            99987643   334444443 4445555667899999999999999998875  457889999999999995  789999


Q ss_pred             eeCceeEEEecc
Q psy18018        239 GSTDRTLKGWSN  250 (635)
Q Consensus       239 ~~~dg~i~~w~~  250 (635)
                      ++.|++|++|+.
T Consensus       212 ~s~D~~v~iW~~  223 (345)
T 3fm0_A          212 CSDDRTVRIWRQ  223 (345)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEecc
Confidence            999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-35  Score=285.07  Aligned_cols=278  Identities=24%  Similarity=0.463  Sum_probs=211.5

Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccc-------------------eeEEeeeccCCCEEEE
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQET-------------------EVELSHGYALRSRIVS  198 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~  198 (635)
                      +|.+.|.+++|  ||++||+++ ++++++|++.+++.+..+..+.                   .+....+.+++.+|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            69999999999  899999976 7899999999988776554332                   1334445566789999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecc
Q psy18018        199 GSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEP  278 (635)
Q Consensus       199 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (635)
                      ++.|+.|++||+.+++.+..+.+|...|.+++                                                
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~------------------------------------------------  172 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLD------------------------------------------------  172 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEE------------------------------------------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEE------------------------------------------------
Confidence            99999999999999999999999999888877                                                


Q ss_pred             ccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE
Q psy18018        279 QFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS  358 (635)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  358 (635)
                                                                                            |+|++.+|++
T Consensus       173 ----------------------------------------------------------------------~~p~~~~l~s  182 (393)
T 1erj_A          173 ----------------------------------------------------------------------YFPSGDKLVS  182 (393)
T ss_dssp             ----------------------------------------------------------------------ECTTSSEEEE
T ss_pred             ----------------------------------------------------------------------EcCCCCEEEE
Confidence                                                                                  4455555666


Q ss_pred             ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee-CCcEEEEEeCCCc
Q psy18018        359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF-DGVHVVSGSLDTS  437 (635)
Q Consensus       359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~l~~~~~d~~  437 (635)
                      ++.|+.|++||+.+++....+. +...+.+++++                               | +++++++++.|+.
T Consensus       183 ~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~-------------------------------~~~~~~l~~~s~d~~  230 (393)
T 1erj_A          183 GSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS-------------------------------PGDGKYIAAGSLDRA  230 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-------------------------------STTCCEEEEEETTSC
T ss_pred             ecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE-------------------------------CCCCCEEEEEcCCCc
Confidence            6666666666666655554443 23345555553                               3 4556666666666


Q ss_pred             EEEEeCCCCceeeee-------ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCc------------eeEEecCCC
Q psy18018        438 IRVWEAESGNLRHTL-------MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQ------------CLQTLSGRN  496 (635)
Q Consensus       438 i~~~d~~~~~~~~~~-------~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~  496 (635)
                      |++||+.+++.+..+       .+|...|.+++++  +++|++++.|+.|++||+.+..            +...+.+  
T Consensus       231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--  308 (393)
T 1erj_A          231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--  308 (393)
T ss_dssp             EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC--
T ss_pred             EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec--
Confidence            666666666655554       5789999999984  6799999999999999997632            3344555  


Q ss_pred             cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC------CCeEEEEe
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF------NSRFVITS  568 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~  568 (635)
                       |...|.++++  ++++|++++.|+.|++||+++++.+..+..           |...|.+++|+|      ++++|++|
T Consensus       309 -h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----------h~~~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          309 -HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----------HRNSVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             -CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             -ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----------CCCCEEEEEecCCcCcCCCCCEEEEE
Confidence             8888999999  689999999999999999999987766554           678888888765      78999999


Q ss_pred             cCCCeEEEEeCCCC
Q psy18018        569 SDDGTVKLWDVKTG  582 (635)
Q Consensus       569 ~~d~~v~iwd~~~~  582 (635)
                      +.||+|+||+++..
T Consensus       377 s~Dg~i~iW~~~~~  390 (393)
T 1erj_A          377 SGDCKARIWKYKKI  390 (393)
T ss_dssp             ETTSEEEEEEEEEC
T ss_pred             CCCCcEEECccccc
Confidence            99999999998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-35  Score=285.02  Aligned_cols=314  Identities=16%  Similarity=0.237  Sum_probs=247.1

Q ss_pred             CCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE-
Q psy18018        141 HLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL-  216 (635)
Q Consensus       141 h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-  216 (635)
                      |.++|.+++|  ||+.++++..++.+..|+............+ ..+......+++.++++++ ||.|++||+.+++.. 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            5678899999  9999999988888777766655444333334 3444444455566777777 899999998765432 


Q ss_pred             --EEEe--CCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018        217 --RTLI--GHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL  292 (635)
Q Consensus       217 --~~~~--~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (635)
                        ..+.  +|...|.+++                                                              
T Consensus        87 ~~~~~~~~~~~~~v~~~~--------------------------------------------------------------  104 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCK--------------------------------------------------------------  104 (337)
T ss_dssp             CSEEEECSCTTSBEEEEE--------------------------------------------------------------
T ss_pred             eeecccccCCCCcEEEEE--------------------------------------------------------------
Confidence              2222  4555544444                                                              


Q ss_pred             eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC
Q psy18018        293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES  372 (635)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~  372 (635)
                                                                              |+|+++++++++.+|.|++||+.+
T Consensus       105 --------------------------------------------------------~~~~~~~l~~~~~d~~i~~~d~~~  128 (337)
T 1gxr_A          105 --------------------------------------------------------LLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             --------------------------------------------------------ECTTSSEEEEEESSSEEEEEECCC
T ss_pred             --------------------------------------------------------EcCCCCEEEEEcCCCcEEEEECCC
Confidence                                                                    667777788888888888888877


Q ss_pred             Cc--eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018        373 GN--LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH  450 (635)
Q Consensus       373 ~~--~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  450 (635)
                      ++  ....+..|...+.+++++                               |+++++++++.|+.|++||+++++...
T Consensus       129 ~~~~~~~~~~~~~~~i~~~~~~-------------------------------~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A          129 PTPRIKAELTSSAPACYALAIS-------------------------------PDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             C--EEEEEEECSSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCcceeeecccCCCceEEEEEC-------------------------------CCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            66  556677788888888775                               456677778888888888888888888


Q ss_pred             eeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018        451 TLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       451 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~  526 (635)
                      .+..|...+.++.+  +++++++++.|+.|++||+++++.+..+.    +...+.++++  +++++++++.|+.|++||+
T Consensus       178 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~  253 (337)
T 1gxr_A          178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            89999999999998  46699999999999999999999888775    6678999998  6899999999999999999


Q ss_pred             CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      ++++... +           ..|...|.+++|+|++++|++++.||.|++||+.+++.+...      .+...+.+++|+
T Consensus       254 ~~~~~~~-~-----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------~~~~~v~~~~~s  315 (337)
T 1gxr_A          254 NKPDKYQ-L-----------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------KESSSVLSCDIS  315 (337)
T ss_dssp             TSSCEEE-E-----------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSCEEEEEEC
T ss_pred             CCCCeEE-E-----------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEC
Confidence            9876432 1           236889999999999999999999999999999999988554      467889999999


Q ss_pred             CCCeEEEEccCCCeeEeEEEEE
Q psy18018        607 ETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      |++++|++++.||.  +++|.+
T Consensus       316 ~~~~~l~~~~~dg~--i~iw~~  335 (337)
T 1gxr_A          316 VDDKYIVTGSGDKK--ATVYEV  335 (337)
T ss_dssp             TTSCEEEEEETTSC--EEEEEE
T ss_pred             CCCCEEEEecCCCe--EEEEEE
Confidence            99999999999998  444443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.6e-35  Score=281.43  Aligned_cols=299  Identities=23%  Similarity=0.365  Sum_probs=232.7

Q ss_pred             cCCCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCc
Q psy18018         67 TRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLA  143 (635)
Q Consensus        67 ~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~  143 (635)
                      .++.++..+|+||.+.| ++++|+   +++|||||.|++|+|||+.+++.                ..+.+...+.+|..
T Consensus        25 ~~~~~l~~tL~GH~~~V-~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------~~~~~~~~l~~h~~   87 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWV-TQIATTPQFPDMILSASRDKTIIMWKLTRDET----------------NYGIPQRALRGHSH   87 (340)
T ss_dssp             -CEEEEEEEECCCSSCE-EEEEECTTCTTEEEEEETTSCEEEEEECCSSS----------------CSEEEEEEECCCSS
T ss_pred             CCceEEEEEECCccCCE-EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------ccceeeEEEeCCCC
Confidence            34445567899999998 999998   68999999999999999876541                23456778899999


Q ss_pred             ceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE-EEE
Q psy18018        144 AVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCL-RTL  219 (635)
Q Consensus       144 ~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~  219 (635)
                      .|.+++|  ++++|++++.|+.|++|+............... .......+.+..+++++.|+.+++||....... ...
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence            9999999  899999999999999999998877666555443 344444556788999999999999998765443 334


Q ss_pred             eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      .+|...+..+.+..                                                                  
T Consensus       168 ~~~~~~v~~~~~~~------------------------------------------------------------------  181 (340)
T 4aow_A          168 ESHSEWVSCVRFSP------------------------------------------------------------------  181 (340)
T ss_dssp             SSCSSCEEEEEECS------------------------------------------------------------------
T ss_pred             ccccCcccceEEcc------------------------------------------------------------------
Confidence            56666666555310                                                                  


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                                        .+....+++++.|+.|++||+.+++.+..+
T Consensus       182 --------------------------------------------------~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~  211 (340)
T 4aow_A          182 --------------------------------------------------NSSNPIIVSCGWDKLVKVWNLANCKLKTNH  211 (340)
T ss_dssp             --------------------------------------------------CSSSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             --------------------------------------------------CCCCcEEEEEcCCCEEEEEECCCCceeeEe
Confidence                                                              112345778888899999999999999999


Q ss_pred             eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018        380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  459 (635)
Q Consensus       380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  459 (635)
                      .+|...|.+++|+                               |++++|++++.|+.|++||+.+.+.+..+..+ ..+
T Consensus       212 ~~h~~~v~~~~~s-------------------------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v  259 (340)
T 4aow_A          212 IGHTGYLNTVTVS-------------------------------PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DII  259 (340)
T ss_dssp             CCCSSCEEEEEEC-------------------------------TTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCE
T ss_pred             cCCCCcEEEEEEC-------------------------------CCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceE
Confidence            9999999998876                               55667777777788888888887777777654 567


Q ss_pred             EEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecC------CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        460 SGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSG------RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       460 ~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      .++.+.+ ..+++++.|+.|++||++++..+..+..      ...|...|++++|  ++++|++|+.||.|++||+++|+
T Consensus       260 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          260 NALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            7888753 4677888899999999998887776653      2247889999999  68999999999999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-36  Score=298.19  Aligned_cols=392  Identities=11%  Similarity=0.116  Sum_probs=237.7

Q ss_pred             CCCCCccccccccceEEEEEecCC------CCCCCceeecCCcchheeeccceeeeeeecCCCCCCcee-eccCcceEEE
Q psy18018         14 PIKDPKVLKGHDDHVITCLQFSGK------SFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVL-KGHDDHVITC   86 (635)
Q Consensus        14 ~~~~~~~l~gh~~~vi~~~~~s~~------~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l-~~h~~~vi~~   86 (635)
                      |.+....+..|...+ ..+.+.|.      -.|+++.++++.              .|+ .+++++..+ .+|.+.| ++
T Consensus         6 ~~~~~~~~~~~~~~l-~~~~~~p~~~~~~~f~~~~~~~~~~~--------------~w~-~~g~~~~~~~~~h~~~V-~~   68 (437)
T 3gre_A            6 HHHGEGDVESIEKFL-STFKILPPLRDYKEFGPIQEIVRSPN--------------MGN-LRGKLIATLMENEPNSI-TS   68 (437)
T ss_dssp             --------CCCGGGT-TCC-CCCCGGGCGGGCCCCCCCCCCC--------------GGG-CCCCEEEEECTTTTSCE-EE
T ss_pred             cccCCCChhHHHHHh-ccCCCCCChhchhhcCCccccccccc--------------ccc-ccceEEeeeccCCCCce-EE
Confidence            444445555555555 55555532      016666666665              288 567888888 8898888 99


Q ss_pred             EEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC
Q psy18018         87 LQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD  161 (635)
Q Consensus        87 ~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d  161 (635)
                      ++|+   +++||+|+.||+|++||+.+.+.        +       ...+....+ +|.++|++++|  ++++|++++.|
T Consensus        69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~--------~-------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           69 SAVSPGETPYLITGSDQGVIKIWNLKEIIV--------G-------EVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEECSSSCEEEEEETTSEEEEEEHHHHHT--------T-------CCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCCCEEEEecCCceEEEeECccccc--------C-------cccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            9998   68999999999999999865110        0       011223333 59999999999  78999999999


Q ss_pred             CeEEEEeCC---CccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe----eCC
Q psy18018        162 YMVKIWNPD---TEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM----AGN  234 (635)
Q Consensus       162 g~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~----~~~  234 (635)
                      |+|++||+.   +++.......+ .+ ....+.+                           .++...+.++.+    ++.
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~-~i-~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCE-CI-RKINLKN---------------------------FGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEE-EE-EEEEGGG---------------------------GSSCCCEEEEEEEECSSCE
T ss_pred             CEEEEEEeccccCCceeeccccc-ee-EEEEccC---------------------------cccccCceEEEEEEcCCCC
Confidence            999999985   33333222111 00 0000000                           002333344332    255


Q ss_pred             EEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccc
Q psy18018        235 IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRS  314 (635)
Q Consensus       235 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (635)
                      .+++++.||.|++||+.+......                                                        
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~--------------------------------------------------------  207 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQI--------------------------------------------------------  207 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEE--------------------------------------------------------
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEE--------------------------------------------------------
Confidence            555555555555555543211000                                                        


Q ss_pred             eeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEeC
Q psy18018        315 WRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRN  393 (635)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~  393 (635)
                                          .....+......++|+|++.+|++|+.||.|++||+.+++.+..+. .|...|.++++.+
T Consensus       208 --------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          208 --------------------IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             --------------------EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             --------------------EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence                                0000011223345578888899999999999999999988888876 7888999997753


Q ss_pred             ------CEEEEEeCCCcEEEEEccCCcceeEEEE---------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc--CC
Q psy18018        394 ------NILVSGNADSTVKVWDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG--HQ  456 (635)
Q Consensus       394 ------~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~  456 (635)
                            .++++++.||.|++||+.+++....+..         ++|+++.+                  ....+.+  |.
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~  329 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL------------------EELNFCGIRSL  329 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG------------------GGCCCCCCCSG
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc------------------ccceecccccC
Confidence                  3777777788888888776654433221         11111111                  0011333  77


Q ss_pred             ccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeee
Q psy18018        457 SLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPL  535 (635)
Q Consensus       457 ~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  535 (635)
                      ..|.++++++ ++|++++.|+.|++||+.+++....+.++...........++....+....      |+......... 
T Consensus       330 ~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-  402 (437)
T 3gre_A          330 NALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK------MKRTSTHSVDD-  402 (437)
T ss_dssp             GGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE------CC----------
T ss_pred             CceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe------cccccccccCc-
Confidence            7888888864 589999999999999999999999888744344445555553332222111      22222221111 


Q ss_pred             ccceecCceeEEeccCceecccccCC--CeEEEEecCCCeEEEEe
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFN--SRFVITSSDDGTVKLWD  578 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~v~iwd  578 (635)
                                ...|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       403 ----------~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          403 ----------SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             --------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ----------ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                      1237889999999998  88999999999999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-35  Score=293.14  Aligned_cols=283  Identities=33%  Similarity=0.556  Sum_probs=234.6

Q ss_pred             EeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE
Q psy18018        137 VLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL  216 (635)
Q Consensus       137 ~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  216 (635)
                      ...+|...|.++++++++|++|+.||+|++||+.+++....+..+...+....+ +++.+++|+.||.|++||+.+++.+
T Consensus       128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            334678889999999999999999999999999999998888877766666666 7889999999999999999999999


Q ss_pred             EEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018        217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV  296 (635)
Q Consensus       217 ~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (635)
                      ..+.+|...|.++.++++.+++++.||.|++||+.+.....                                       
T Consensus       207 ~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~---------------------------------------  247 (435)
T 1p22_A          207 NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT---------------------------------------  247 (435)
T ss_dssp             EEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCE---------------------------------------
T ss_pred             EEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCce---------------------------------------
Confidence            99999999999999999999999999999999987542110                                       


Q ss_pred             EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceE
Q psy18018        297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR  376 (635)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~  376 (635)
                                                            .......+...+.++.++++++++|+.||.|++||+.+++.+
T Consensus       248 --------------------------------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  289 (435)
T 1p22_A          248 --------------------------------------LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV  289 (435)
T ss_dssp             --------------------------------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             --------------------------------------eeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE
Confidence                                                  000112244455566779999999999999999999999999


Q ss_pred             EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018        377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  456 (635)
Q Consensus       377 ~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  456 (635)
                      ..+.+|...+.++.++++.++++                                 +.|+.|++||+.+++.+..+.+|.
T Consensus       290 ~~~~~~~~~v~~~~~~~~~l~~g---------------------------------~~dg~i~iwd~~~~~~~~~~~~h~  336 (435)
T 1p22_A          290 RTLNGHKRGIACLQYRDRLVVSG---------------------------------SSDNTIRLWDIECGACLRVLEGHE  336 (435)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEE---------------------------------ETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEcCCCCcEEEEEeCCCEEEEE---------------------------------eCCCeEEEEECCCCCEEEEEeCCc
Confidence            99999999999888765555554                                 555556666666777888889999


Q ss_pred             ccEEEEEecCCEEEEEeCCCcEEEEECCCCc---------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECC
Q psy18018        457 SLTSGMELRNNILVSGNADSTVKVWDIVSGQ---------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       457 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~  527 (635)
                      ..|.++.++++++++|+.||.|++||+.+++         ++..+..   |...|.++++++++|++++.||.|++||+.
T Consensus       337 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          337 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRVFRLQFDEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCCCCEEECSSCEEECCSSSEEEEEC--
T ss_pred             CcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC---CCCCeEEEEeCCCEEEEEeCCCEEEEEECC
Confidence            9999999999999999999999999997665         6777776   889999999999999999999999999998


Q ss_pred             CCceee
Q psy18018        528 TGEFST  533 (635)
Q Consensus       528 ~~~~~~  533 (635)
                      +.....
T Consensus       414 ~~~~~~  419 (435)
T 1p22_A          414 NDPAAQ  419 (435)
T ss_dssp             ------
T ss_pred             CCCCcc
Confidence            876443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-34  Score=286.39  Aligned_cols=333  Identities=16%  Similarity=0.195  Sum_probs=254.4

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      ++++|+    |+|++|++++.++        .+.+||..+++....+..|  .++.+..|+  +++||+++.|+.|++||
T Consensus        60 ~~~~~s----~~g~~l~~~~~d~--------~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd  125 (420)
T 3vl1_A           60 KGNTFE----KVGSHLYKARLDG--------HDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLD  125 (420)
T ss_dssp             TTCEEE----EEETTEEEEEETT--------EEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred             cceeee----ecCCeEEEEEcCC--------cEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence            589999    9999999998754        4446999999998888888  343555677  88999999988888887


Q ss_pred             CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeE
Q psy18018        108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVE  185 (635)
Q Consensus       108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  185 (635)
                      +.                     +++....+.+|.+.|++++|  ++++|++++.|++|++||+.+++.+..+..+...+
T Consensus       126 ~~---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  184 (420)
T 3vl1_A          126 SN---------------------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV  184 (420)
T ss_dssp             TT---------------------SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred             CC---------------------CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence            65                     44566777899999999999  88999999999999999999999888887665544


Q ss_pred             Ee-eeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018        186 LS-HGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG---HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI  261 (635)
Q Consensus       186 ~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  261 (635)
                      .. ...+++..|++++.|+.|++||+.+++.+..+..   |...+.++.+...      .+..  +.             
T Consensus       185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~--~~-------------  243 (420)
T 3vl1_A          185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG------TDRQ--LH-------------  243 (420)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC------CCSS--CG-------------
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC------Ccce--ee-------------
Confidence            44 4455678999999999999999999999999875   5566777665210      0000  00             


Q ss_pred             cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018        262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT  341 (635)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (635)
                                                                                                  ....
T Consensus       244 ----------------------------------------------------------------------------~~~~  247 (420)
T 3vl1_A          244 ----------------------------------------------------------------------------EIST  247 (420)
T ss_dssp             ----------------------------------------------------------------------------GGCC
T ss_pred             ----------------------------------------------------------------------------eccc
Confidence                                                                                        0011


Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      .....++|+|+++++++|+.||.|++||+.+++....+. .|...+.+++|+                            
T Consensus       248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----------------------------  299 (420)
T 3vl1_A          248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD----------------------------  299 (420)
T ss_dssp             CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC----------------------------
T ss_pred             CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEe----------------------------
Confidence            223345689999999999999999999999988776664 477889888886                            


Q ss_pred             EEeeCCc-EEEEEeCCCcEEEEeCCCCc-eeeeecc-CCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCcee-------
Q psy18018        421 ICLFDGV-HVVSGSLDTSIRVWEAESGN-LRHTLMG-HQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCL-------  489 (635)
Q Consensus       421 ~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~-------  489 (635)
                         |++. +|++++.||.|++||+++++ ++..+.+ |...+.++.+ +++++++++.|+.|++|++...+..       
T Consensus       300 ---~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  376 (420)
T 3vl1_A          300 ---GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFE  376 (420)
T ss_dssp             ---SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred             ---CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence               3444 56666667777777777654 3566666 6678888876 4669999999999999998864221       


Q ss_pred             --EEecCCCcccccEEEEEe--cCC---EEEEEeCCCcEEEEECCC
Q psy18018        490 --QTLSGRNKHQSAVTCLQF--NSR---FVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       490 --~~~~~~~~~~~~v~~~~~--~~~---~l~~~~~d~~i~vwd~~~  528 (635)
                        ..+..   +...|.+++|  ++.   .+++++.+|.+.+|++++
T Consensus       377 ~~~~~~~---~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          377 TPTFLVS---NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEEECC---SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CccEEcc---CCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence              12222   6778888888  566   677777899999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4e-34  Score=300.39  Aligned_cols=228  Identities=22%  Similarity=0.363  Sum_probs=179.6

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      |+|++++|++|+.||.|++||+.++.....+.+|...|.+++|+  ++.|++++.|+.|++||                 
T Consensus       438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd-----------------  500 (694)
T 3dm0_A          438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-----------------  500 (694)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC-----------------
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE-----------------
Confidence            66777888888888889999988888888999999999999986  34555555555555554                 


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceee---eeccCCccEEEEEecC----CEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRH---TLMGHQSLTSGMELRN----NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ  499 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  499 (635)
                                      ........   ...+|...|.++.+++    ..+++++.|+.|++||+++++....+.+   |.
T Consensus       501 ----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---h~  561 (694)
T 3dm0_A          501 ----------------TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HT  561 (694)
T ss_dssp             ----------------TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC---CS
T ss_pred             ----------------CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC---CC
Confidence                            43222111   1246888999999864    4799999999999999999999888887   89


Q ss_pred             ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       500 ~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      ..|.++++  ++++|++++.||.|++||+.+++.+..+.            +...|.+++|+|++.+|++++ ++.|+||
T Consensus       562 ~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iw  628 (694)
T 3dm0_A          562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE------------ANSVIHALCFSPNRYWLCAAT-EHGIKIW  628 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB------------CSSCEEEEEECSSSSEEEEEE-TTEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEE
Confidence            99999999  68999999999999999999988665543            345799999999999988776 5569999


Q ss_pred             eCCCCceEEeeeeccCC--------------CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        578 DVKTGEFIRNLVSLDSG--------------GSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~--------------~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      |+.+++.+..+......              .+...+++++|+|||++|++|+.||.  +++|.
T Consensus       629 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~--i~iW~  690 (694)
T 3dm0_A          629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV--IRVWG  690 (694)
T ss_dssp             ETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE--EEEEE
T ss_pred             ECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe--EEEEe
Confidence            99999988776421110              11123789999999999999999998  55554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-36  Score=298.69  Aligned_cols=345  Identities=7%  Similarity=0.047  Sum_probs=219.8

Q ss_pred             CCCceeeccCcceEEEEEEc--C---------CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeE----E
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--G---------SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGEC----L  135 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~---------~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~----~  135 (635)
                      +...++. +.+.| .+++|+  +         ++||+++.++...-+  .....++++++.|++|++||+.+++.    .
T Consensus       125 r~~~~~~-~~~~V-~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~--~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~  200 (524)
T 2j04_B          125 RRGFIYN-VGGLV-TDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPL--NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKV  200 (524)
T ss_dssp             SCEEEEE-CCC---CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------CEEEEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCCce-eEEEecccCCCCccCcCCeEEEEEEecccCCcc--chhhhhhccCCCCceEEEEEccCCCCCceEE
Confidence            3333444 55666 899999  5         799999876532111  11223579999999999999987764    2


Q ss_pred             EEeeCCCcceEEEEe--c------CCEEEEEeCCCeEEEEeCCCccce-----------eeccccceeEEeeeccCCCEE
Q psy18018        136 HVLVGHLAAVRCVQY--D------GKLVVSGAYDYMVKIWNPDTEECL-----------HAELQETEVELSHGYALRSRI  196 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~--~------~~~l~s~~~dg~v~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l  196 (635)
                      ..+.+|.+.|.+++|  +      +.+||+++.||+|++||+.+++..           ..+..+...+.++.+.+++.|
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l  280 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV  280 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence            456788999999999  3      469999999999999999876422           233344455566666666799


Q ss_pred             EEEeCCCcEEEEECCCC-eEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeee
Q psy18018        197 VSGSDDNTLKVWSATTG-KCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQL  275 (635)
Q Consensus       197 ~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (635)
                      ++|+.||+|++||+.++ .+...+.+|...|.++++                                            
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~--------------------------------------------  316 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST--------------------------------------------  316 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE--------------------------------------------
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE--------------------------------------------
Confidence            99999999999999876 445668899999998841                                            


Q ss_pred             eccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecC-c
Q psy18018        276 IEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG-V  354 (635)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~  354 (635)
                                                                                              ++++++ .
T Consensus       317 ------------------------------------------------------------------------~~s~~g~~  324 (524)
T 2j04_B          317 ------------------------------------------------------------------------AYSDFEDT  324 (524)
T ss_dssp             ------------------------------------------------------------------------ECCTTSCC
T ss_pred             ------------------------------------------------------------------------EcCCCCCe
Confidence                                                                                    022233 3


Q ss_pred             EEEEecCCCeEEEEEccCCceEEeeeCCCc--ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEE
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSG  432 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~  432 (635)
                      +|++++.|++|++||+++++....+.+|..  .+.+++|+                               |+++.++++
T Consensus       325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-------------------------------p~~~~l~s~  373 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-------------------------------PQIYSYIYS  373 (524)
T ss_dssp             EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-------------------------------TTTTEEEEE
T ss_pred             EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC-------------------------------CCcCeEEEe
Confidence            444444444444444444433333333322  34455554                               667778888


Q ss_pred             eCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCC--CcccccEEEEEe-
Q psy18018        433 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGR--NKHQSAVTCLQF-  507 (635)
Q Consensus       433 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~-  507 (635)
                      +.|++|++||++++.....+.+|.+.|.+++++  +++|++|+.||+|++||+... .+......  ..+...+.+++| 
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~s  452 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYS  452 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCC
T ss_pred             CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccC
Confidence            888889999998888888899999999999985  568999999999999998653 22221110  001224667777 


Q ss_pred             -cCCEEEEEeCCCcEEEEECC-CCceeeeeccceecCceeEEeccCceecccccCCCe---EEEEecCCCeEEEEeCCC
Q psy18018        508 -NSRFVITSSDDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR---FVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       508 -~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~v~iwd~~~  581 (635)
                       +++.+ ....  .+++|+.. ++.....+.           .|...|.+++|+|++.   ++|+|+.||.|+||++.-
T Consensus       453 p~g~~~-~~~~--~~~~~~~~~~g~~~~~l~-----------gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          453 IKDDKY-RIDS--SYEVYPLTVNDVSKAKID-----------AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             SSSCEE-EECC--CCCCCC------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCCeE-EccC--CceecccccCCcceeeec-----------CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence             34433 2222  22333322 233333333           3788999999999965   999999999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.5e-34  Score=300.79  Aligned_cols=297  Identities=26%  Similarity=0.438  Sum_probs=220.4

Q ss_pred             CceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEE
Q psy18018         73 PKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQ  149 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~  149 (635)
                      ...|++|.+.| +|++|+   +++|+||+.|++|++||+.++..                ..+.....+.+|...|.+++
T Consensus       375 ~~~l~~H~~~V-~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~----------------~~~~~~~~~~~h~~~v~~v~  437 (694)
T 3dm0_A          375 KGTMRAHTDMV-TAIATPIDNADIIVSASRDKSIILWKLTKDDK----------------AYGVAQRRLTGHSHFVEDVV  437 (694)
T ss_dssp             EEEEECCSSCE-EEEECCTTCCSEEEEEETTSEEEEEECCCSTT----------------CSCEEEEEEECCSSCEEEEE
T ss_pred             hhhcccCCcee-EEEEecCCCCCEEEEEeCCCcEEEEEccCCCc----------------ccccccceecCCCCcEEEEE
Confidence            34688999998 999998   57999999999999999875431                12456678899999999999


Q ss_pred             e--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeE
Q psy18018        150 Y--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW  227 (635)
Q Consensus       150 ~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  227 (635)
                      |  ++++|++++.||+|++||+.+                                         ++.+..+.+|...|.
T Consensus       438 ~s~~g~~l~sgs~Dg~v~vwd~~~-----------------------------------------~~~~~~~~~h~~~v~  476 (694)
T 3dm0_A          438 LSSDGQFALSGSWDGELRLWDLAA-----------------------------------------GVSTRRFVGHTKDVL  476 (694)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-----------------------------------------TEEEEEEECCSSCEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCC-----------------------------------------CcceeEEeCCCCCEE
Confidence            9  788888888877777776543                                         444556778999999


Q ss_pred             EEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhh
Q psy18018        228 SSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL  305 (635)
Q Consensus       228 ~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (635)
                      +++|+  ++.|++++.|++|++||...                                                     
T Consensus       477 ~~~~s~~~~~l~s~s~D~~i~iwd~~~-----------------------------------------------------  503 (694)
T 3dm0_A          477 SVAFSLDNRQIVSASRDRTIKLWNTLG-----------------------------------------------------  503 (694)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEECTTS-----------------------------------------------------
T ss_pred             EEEEeCCCCEEEEEeCCCEEEEEECCC-----------------------------------------------------
Confidence            98873  55677777777777776422                                                     


Q ss_pred             HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE---eeeCC
Q psy18018        306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH---TLMGH  382 (635)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~---~~~~~  382 (635)
                                                                                         .....   ...+|
T Consensus       504 -------------------------------------------------------------------~~~~~~~~~~~~h  516 (694)
T 3dm0_A          504 -------------------------------------------------------------------ECKYTISEGGEGH  516 (694)
T ss_dssp             -------------------------------------------------------------------CEEEEECSSTTSC
T ss_pred             -------------------------------------------------------------------CcceeeccCCCCC
Confidence                                                                               11110   11357


Q ss_pred             CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEE
Q psy18018        383 QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM  462 (635)
Q Consensus       383 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  462 (635)
                      ...|.+++|+++                             .....+++++.|+.|++||+.+++....+.+|...|.++
T Consensus       517 ~~~v~~~~~~~~-----------------------------~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v  567 (694)
T 3dm0_A          517 RDWVSCVRFSPN-----------------------------TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV  567 (694)
T ss_dssp             SSCEEEEEECSC-----------------------------SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCcEEEEEEeCC-----------------------------CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            778888887631                             012356777777888888888888888999999999999


Q ss_pred             Eec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018        463 ELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       463 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      +++  +++|++++.||.|++||+.+++.+..+.    +...+.+++|  ++.+++++ .|+.|++||+++++.+..+..+
T Consensus       568 ~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             EECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCC
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccc
Confidence            985  6799999999999999999999887776    4567899999  45666555 4667999999999877766532


Q ss_pred             eecC--------ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        539 FILN--------PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       539 ~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ....        +.....+...+++++|||||++|++|+.||+|+|||+..
T Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            2111        001111222478899999999999999999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.9e-34  Score=284.15  Aligned_cols=265  Identities=27%  Similarity=0.565  Sum_probs=234.1

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      .+...+.++.++++++++|+.||.|++||+.+++....+.+|...|.+++++++.+++++.||.|++||+.+++......
T Consensus       131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  210 (435)
T 1p22_A          131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI  210 (435)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999886554432


Q ss_pred             -------EEeeCCcEEEEEeCCCcEEEEeCCCCcee---eeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeE
Q psy18018        421 -------ICLFDGVHVVSGSLDTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       421 -------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  490 (635)
                             ....++..+++++.|+.|++||+.+++..   ..+.+|...|.++.++++++++++.||.|++||+.+++.+.
T Consensus       211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  290 (435)
T 1p22_A          211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR  290 (435)
T ss_dssp             CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEE
Confidence                   23446789999999999999999987665   67889999999999999999999999999999999999999


Q ss_pred             EecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      .+..   |...|.+++++++++++|+.||.|++||+++++.+..+..           |...|.+++|  ++++|++|+.
T Consensus       291 ~~~~---~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~--~~~~l~sg~~  354 (435)
T 1p22_A          291 TLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-----------HEELVRCIRF--DNKRIVSGAY  354 (435)
T ss_dssp             EEEC---CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC-----------CSSCEEEEEC--CSSEEEEEET
T ss_pred             EEcC---CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-----------CcCcEEEEEe--cCCEEEEEeC
Confidence            9987   8899999999999999999999999999999987776654           6788999988  8899999999


Q ss_pred             CCeEEEEeCCCCc---------eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        571 DGTVKLWDVKTGE---------FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       571 d~~v~iwd~~~~~---------~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ||.|++||+.+++         .+..+     .+|.+.|.+++|  ++.+|++++.||.    |..||+..
T Consensus       355 dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~--~~~~l~s~s~Dg~----i~iwd~~~  414 (435)
T 1p22_A          355 DGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF--DEFQIVSSSHDDT----ILIWDFLN  414 (435)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE--CSSCEEECCSSSE----EEEEC---
T ss_pred             CCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe--CCCEEEEEeCCCE----EEEEECCC
Confidence            9999999998776         67777     578999999999  7889999999998    44555443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-34  Score=280.00  Aligned_cols=309  Identities=14%  Similarity=0.198  Sum_probs=231.0

Q ss_pred             EeeCCCcceEEEEec------CCEEEEEeCCCeEEEEeCCCccceeecccc------ceeEEeeeccC----CCEEEEEe
Q psy18018        137 VLVGHLAAVRCVQYD------GKLVVSGAYDYMVKIWNPDTEECLHAELQE------TEVELSHGYAL----RSRIVSGS  200 (635)
Q Consensus       137 ~l~~h~~~v~~l~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~----~~~l~~~~  200 (635)
                      ...+|.++|++++|.      ...+++++.++.|++||+.+++.+..+...      ..+......+.    +.+|++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            445899999999994      456777777889999999988776554422      23444444444    45899999


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccc
Q psy18018        201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF  280 (635)
Q Consensus       201 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (635)
                      .||.|++||+.+++.+..+.+|...|.++.                                                  
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~--------------------------------------------------  122 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELK--------------------------------------------------  122 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEE--------------------------------------------------
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEE--------------------------------------------------
Confidence            999999999999999999999999888877                                                  


Q ss_pred             ccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEe
Q psy18018        281 QRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSG  359 (635)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~  359 (635)
                                                                                          |+| ++.+|+++
T Consensus       123 --------------------------------------------------------------------~~~~~~~~l~s~  134 (366)
T 3k26_A          123 --------------------------------------------------------------------FHPRDPNLLLSV  134 (366)
T ss_dssp             --------------------------------------------------------------------ECSSCTTEEEEE
T ss_pred             --------------------------------------------------------------------ECCCCCCEEEEE
Confidence                                                                                555 56677777


Q ss_pred             cCCCeEEEEEccCCceEEee---eCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE---EEeeCCcEEEE
Q psy18018        360 SLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR---ICLFDGVHVVS  431 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~l~~  431 (635)
                      +.||.|++||+.+++.+..+   ..|...|.+++|+  ++.|++++.||.|++||+.+++......   .+++++..+..
T Consensus       135 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred             eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence            77888888888877777777   6899999999997  5688888888888888887654332111   12233222221


Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCce--------------eEEecCCCc
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQC--------------LQTLSGRNK  497 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~  497 (635)
                      .....        .........+|...|.++.++++++++++.|+.|++||+.+++.              +..+..   
T Consensus       215 ~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---  283 (366)
T 3k26_A          215 ISQKI--------HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---  283 (366)
T ss_dssp             CCEEE--------CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---
T ss_pred             cceee--------ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc---
Confidence            11100        01223445569999999999999999999999999999987644              555555   


Q ss_pred             ccccEEEEEe--c--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEec--cCceecccccCCCeEEEEecCC
Q psy18018        498 HQSAVTCLQF--N--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY--SQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       498 ~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      |...|.+++|  +  +++|++++.||.|++||+.+++.......       ....|  ...|++++|+|++++|++++.|
T Consensus       284 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          284 SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT-------TLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE-------EECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce-------EEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence            7777887877  5  89999999999999999998864431111       11123  6899999999999999999999


Q ss_pred             CeEEEEeCCC
Q psy18018        572 GTVKLWDVKT  581 (635)
Q Consensus       572 ~~v~iwd~~~  581 (635)
                      |.|++||+.+
T Consensus       357 g~i~iwd~~~  366 (366)
T 3k26_A          357 ASIWRWDRLR  366 (366)
T ss_dssp             SEEEEEEC--
T ss_pred             CEEEEEEecC
Confidence            9999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.6e-34  Score=280.83  Aligned_cols=304  Identities=14%  Similarity=0.157  Sum_probs=223.7

Q ss_pred             EEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCcc------ceeeccccceeEEeeec-cC----C---CEEEEE
Q psy18018        134 CLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEE------CLHAELQETEVELSHGY-AL----R---SRIVSG  199 (635)
Q Consensus       134 ~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~-~~----~---~~l~~~  199 (635)
                      ....+.+|.++|++++|+.++|++++.||+|++||+.+++      .+..+..+...+..+.+ +.    +   .+|+++
T Consensus         8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            4567789999999999977999999999999999999987      56666655554444444 44    5   789999


Q ss_pred             eCCCcEEEEECCCCeE-----EEEEeCC-----CCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018        200 SDDNTLKVWSATTGKC-----LRTLIGH-----TGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI  269 (635)
Q Consensus       200 ~~dg~i~vwd~~~~~~-----~~~~~~h-----~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  269 (635)
                      +.||.|++||+.+++.     +..+..|     ...|.++.|...                                   
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------------  132 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS-----------------------------------  132 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC-----------------------------------
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec-----------------------------------
Confidence            9999999999888776     7777777     477777665400                                   


Q ss_pred             eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018        270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF  349 (635)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (635)
                                                                                                     -
T Consensus       133 -------------------------------------------------------------------------------~  133 (397)
T 1sq9_A          133 -------------------------------------------------------------------------------N  133 (397)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             EecCcE-EEEecCCCeEEEEEccC------CceEE-----ee-------eCCCcceeEEEEeCCEEEEEeCCCcEEEEEc
Q psy18018        350 QFDGVH-VVSGSLDTSIRVWEAES------GNLRH-----TL-------MGHQSLTSGMELRNNILVSGNADSTVKVWDI  410 (635)
Q Consensus       350 s~~~~~-l~~~~~dg~i~v~~~~~------~~~~~-----~~-------~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~  410 (635)
                      .|++.+ |++++.||.|++||+.+      ++.+.     .+       ..|...+.+++|+                  
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------  195 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS------------------  195 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC------------------
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC------------------
Confidence            033444 44444444444444443      22222     33       3467777777775                  


Q ss_pred             cCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc---C---CccEEEEEe--cCCEEEEEeCC---CcEE
Q psy18018        411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG---H---QSLTSGMEL--RNNILVSGNAD---STVK  479 (635)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~---~~~v~~~~~--~~~~l~s~~~d---g~i~  479 (635)
                                   |++ .+++++.|+.|++||+++++.+..+..   |   ...+.++.+  ++++|++++.|   +.|+
T Consensus       196 -------------~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          196 -------------ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  261 (397)
T ss_dssp             -------------TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             -------------CCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence                         455 677777778888888888888888888   8   899999998  46799999999   9999


Q ss_pred             EEECCCCceeEEecCCC----------cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeec------ccee-
Q psy18018        480 VWDIVSGQCLQTLSGRN----------KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLM------SSFI-  540 (635)
Q Consensus       480 iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------~~~~-  540 (635)
                      +||+.+++.+..+....          .|...|.+++|  ++++|++++.||.|++||+++++.+..+.      .+.. 
T Consensus       262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T 1sq9_A          262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  341 (397)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             EEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence            99999999888876411          16788999999  58999999999999999999998877766      2100 


Q ss_pred             ---cCceeEEeccCceecccccCCC----------eEEEEecCCCeEEEEeCCCCc
Q psy18018        541 ---LNPFYFLIYSQPLLCPHLQFNS----------RFVITSSDDGTVKLWDVKTGE  583 (635)
Q Consensus       541 ---~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~d~~v~iwd~~~~~  583 (635)
                         ........|...|++++|+|++          ++|++++.||.|++||+++|+
T Consensus       342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence               0000001137899999999998          799999999999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-33  Score=261.90  Aligned_cols=288  Identities=24%  Similarity=0.344  Sum_probs=228.1

Q ss_pred             CCCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV  148 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l  148 (635)
                      .+..+.+.+|.+.| ++++|. +++|++++.||.|++||+.                     +++....+..|...|.++
T Consensus         8 ~~~~~~l~~h~~~v-~~~~~~~~~~l~s~~~dg~v~vw~~~---------------------~~~~~~~~~~~~~~v~~~   65 (313)
T 3odt_A            8 YQLSATLKGHDQDV-RDVVAVDDSKVASVSRDGTVRLWSKD---------------------DQWLGTVVYTGQGFLNSV   65 (313)
T ss_dssp             CEEEEEECCCSSCE-EEEEEEETTEEEEEETTSEEEEEEES---------------------SSEEEEEEEECSSCEEEE
T ss_pred             HHHHHHhhCCCCCc-EEEEecCCCEEEEEEcCCcEEEEECC---------------------CCEEEEEeecCCccEEEE
Confidence            36678899999998 899998 9999999999999888875                     345667788999999999


Q ss_pred             Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018        149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV  226 (635)
Q Consensus       149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  226 (635)
                      +|  ++++|++++.||.|++|++....                                      ..+.+..+.+|...|
T Consensus        66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~i  107 (313)
T 3odt_A           66 CYDSEKELLLFGGKDTMINGVPLFATS--------------------------------------GEDPLYTLIGHQGNV  107 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTCCT--------------------------------------TSCC-CEECCCSSCE
T ss_pred             EECCCCCEEEEecCCCeEEEEEeeecC--------------------------------------CCCcccchhhcccCE
Confidence            99  89999999999999999986532                                      223345566788888


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      .++.++++.+++++.||.|++||.......                                                  
T Consensus       108 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--------------------------------------------------  137 (313)
T 3odt_A          108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN--------------------------------------------------  137 (313)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEETTEEEEE--------------------------------------------------
T ss_pred             EEEEecCCEEEEEeCCCCEEEEcCCcEEEe--------------------------------------------------
Confidence            888888888888888888888872211100                                                  


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeC-CCc
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQS  384 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~  384 (635)
                                                    ...+......+++.| ++.++++++.||.|++||  .++....+.. |..
T Consensus       138 ------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~  185 (313)
T 3odt_A          138 ------------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND  185 (313)
T ss_dssp             ------------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS
T ss_pred             ------------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc
Confidence                                          000112233345666 889999999999999999  4556666666 788


Q ss_pred             ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe
Q psy18018        385 LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL  464 (635)
Q Consensus       385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  464 (635)
                      .+.+++++                               +++. +++++.|+.|++||+++++.+..+.+|...+.++.+
T Consensus       186 ~i~~~~~~-------------------------------~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  233 (313)
T 3odt_A          186 VVRHLAVV-------------------------------DDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL  233 (313)
T ss_dssp             CEEEEEEE-------------------------------ETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             cEEEEEEc-------------------------------CCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence            88888775                               4444 677778888888888888899999999999999999


Q ss_pred             cCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeee
Q psy18018        465 RNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPL  535 (635)
Q Consensus       465 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~  535 (635)
                      +++ .+++++.||.|++||+.+++.+..+..   |...|.+++|  +++ +++++.||.|++||+++++.....
T Consensus       234 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          234 LPNGDIVSCGEDRTVRIWSKENGSLKQVITL---PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             CTTSCEEEEETTSEEEEECTTTCCEEEEEEC---SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             ecCCCEEEEecCCEEEEEECCCCceeEEEec---cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            644 799999999999999999999999887   7789999999  455 777999999999999988765544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-34  Score=283.46  Aligned_cols=338  Identities=11%  Similarity=0.183  Sum_probs=245.2

Q ss_pred             CCeEEEEe-eCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCC---cc---ceeeccccceeEEeeeccCCCEEEEEe
Q psy18018        131 SGECLHVL-VGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT---EE---CLHAELQETEVELSHGYALRSRIVSGS  200 (635)
Q Consensus       131 ~~~~~~~l-~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (635)
                      +++++..+ .+|.++|++++|   ++++|++++.||+|++||+.+   +.   ....+.+...+....+.+.+..|++++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe
Confidence            46778888 899999999999   578999999999999999877   33   222333344555555556678999999


Q ss_pred             CCCcEEEEECC---CCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeec
Q psy18018        201 DDNTLKVWSAT---TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE  277 (635)
Q Consensus       201 ~dg~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (635)
                      .||.|++||+.   +++.+..+.+|  .+..+.++...    ..+..+.++                             
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~----~~~~~~~~~-----------------------------  175 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG----KNEYAVRMR-----------------------------  175 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----SCCCEEEEE-----------------------------
T ss_pred             CCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----cccCceEEE-----------------------------
Confidence            99999999984   56666655544  44444432100    000000000                             


Q ss_pred             cccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEE
Q psy18018        278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVV  357 (635)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  357 (635)
                                                                                           ..+++++.+++
T Consensus       176 ---------------------------------------------------------------------~~~~~~~~~l~  186 (437)
T 3gre_A          176 ---------------------------------------------------------------------AFVNEEKSLLV  186 (437)
T ss_dssp             ---------------------------------------------------------------------EEECSSCEEEE
T ss_pred             ---------------------------------------------------------------------EEEcCCCCEEE
Confidence                                                                                 11557899999


Q ss_pred             EecCCCeEEEEEccCCceEEeeeC--CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCC
Q psy18018        358 SGSLDTSIRVWEAESGNLRHTLMG--HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD  435 (635)
Q Consensus       358 ~~~~dg~i~v~~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d  435 (635)
                      +++.||.|++||+.+++.+..+..  |...|.+++|+                               |++++|++++.|
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-------------------------------~~~~~l~s~~~d  235 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-------------------------------EECCVLILGTTR  235 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-------------------------------TTSCEEEEEETT
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-------------------------------CCCCEEEEEcCC
Confidence            999999999999999999999988  88899998875                               566677788888


Q ss_pred             CcEEEEeCCCCceeeeec-cCCccEEEEEec------CCEEEEEeCCCcEEEEECCCCceeEEecCCC------------
Q psy18018        436 TSIRVWEAESGNLRHTLM-GHQSLTSGMELR------NNILVSGNADSTVKVWDIVSGQCLQTLSGRN------------  496 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------  496 (635)
                      |.|++||+++++.+..+. .|...|.++.+.      +.++++++.||.|++||+.+++.+..+..+.            
T Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (437)
T 3gre_A          236 GIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE  315 (437)
T ss_dssp             SCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred             CeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence            888888888888888776 788899999654      3389999999999999999999888777431            


Q ss_pred             -----------cccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018        497 -----------KHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       497 -----------~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                                 .|...|.++++ ++++|++++.|+.|++||+.+++....+..+..        ....+....++++..+
T Consensus       316 ~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  387 (437)
T 3gre_A          316 KGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSR--------FSDVFIPTQVTANLTM  387 (437)
T ss_dssp             SSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC----------CCCEEEEEEEETTEEE
T ss_pred             cccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccc--------cCceEEEEEeecceEE
Confidence                       16667888888 577999999999999999999987777654321        1233445566666666


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC--CeEEEEccCCCeeEeEEE
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET--KLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d--~~~l~~~~~dg~~~~~l~  626 (635)
                      ++..        |+...+..+...     ..|.+.|.+++|+++  +.+|++|+.||.  ++||
T Consensus       388 ~~~~--------~~~~~~~~~~~~-----~~h~~~I~~i~~~~~~~~~~l~s~~~dG~--I~iw  436 (437)
T 3gre_A          388 LLRK--------MKRTSTHSVDDS-----LYHHDIINSISTCEVDETPLLVACDNSGL--IGIF  436 (437)
T ss_dssp             EEEE--------CC------------------CCCEEEEEEEESSSSEEEEEEETTSC--EEEE
T ss_pred             EEEe--------cccccccccCcc-----cccccceeeEeeeccCCceEEEEEcCCce--EEEe
Confidence            6554        333444444333     468899999999998  889999999999  6666

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.3e-34  Score=281.07  Aligned_cols=296  Identities=16%  Similarity=0.177  Sum_probs=227.0

Q ss_pred             CceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018         73 PKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--  150 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--  150 (635)
                      .+.+.+|.+.| ++++|+.++|++++.||.|++||+.+++.               ....+.+..+.+|..+|.+++|  
T Consensus         9 ~~~~~~h~~~i-~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---------------~~~~~~~~~~~~h~~~v~~~~~~~   72 (397)
T 1sq9_A            9 ANAGKAHDADI-FSVSACNSFTVSCSGDGYLKVWDNKLLDN---------------ENPKDKSYSHFVHKSGLHHVDVLQ   72 (397)
T ss_dssp             EEESSCSSSCE-EEEEECSSEEEEEETTSEEEEEESBCCTT---------------CCGGGGEEEEECCTTCEEEEEEEE
T ss_pred             hhhhhhhhcCe-EEEEecCCeEEEEcCCCEEEEEECCCccc---------------ccCCCcceEEecCCCcEEEEEEec
Confidence            45678999988 99999999999999999999999875531               0112356778899999999999  


Q ss_pred             c----C---CEEEEEeCCCeEEEEeCCCccc-----eeecccc------ceeEEeeec----cCCCE-EEEEeCCCcEEE
Q psy18018        151 D----G---KLVVSGAYDYMVKIWNPDTEEC-----LHAELQE------TEVELSHGY----ALRSR-IVSGSDDNTLKV  207 (635)
Q Consensus       151 ~----~---~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-l~~~~~dg~i~v  207 (635)
                      +    +   ++|++++.||.|++||+.+++.     ...+..+      ..+......    +.+.. +++++.||.|++
T Consensus        73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (397)
T 1sq9_A           73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  152 (397)
T ss_dssp             EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence            6    8   8999999999999999998876     6655554      334444444    45667 778888888888


Q ss_pred             EECCC------CeEEE-----EEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeee
Q psy18018        208 WSATT------GKCLR-----TLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLI  276 (635)
Q Consensus       208 wd~~~------~~~~~-----~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (635)
                      ||+.+      ++.+.     .+.++                      +..                             
T Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~-----------------------------  181 (397)
T 1sq9_A          153 WKFHPFADESNSLTLNWSPTLELQGT----------------------VES-----------------------------  181 (397)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEE----------------------ECC-----------------------------
T ss_pred             EeCCccccccccceeeccCcceeeee----------------------ecc-----------------------------
Confidence            88765      32222     11100                      000                             


Q ss_pred             ccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE
Q psy18018        277 EPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV  356 (635)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  356 (635)
                                                                                  ..........++++|++ ++
T Consensus       182 ------------------------------------------------------------~~~~~~~i~~~~~~~~~-~l  200 (397)
T 1sq9_A          182 ------------------------------------------------------------PMTPSQFATSVDISERG-LI  200 (397)
T ss_dssp             ------------------------------------------------------------SSSSCCCCCEEEECTTS-EE
T ss_pred             ------------------------------------------------------------ccCCCCCceEEEECCCc-eE
Confidence                                                                        01122345567789999 99


Q ss_pred             EEecCCCeEEEEEccCCceEEeeeC---C---CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        357 VSGSLDTSIRVWEAESGNLRHTLMG---H---QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       357 ~~~~~dg~i~v~~~~~~~~~~~~~~---~---~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      ++++.||.|++||+.+++.+..+..   |   ...+.+++|+                               |++++|+
T Consensus       201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-------------------------------~~~~~l~  249 (397)
T 1sq9_A          201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-------------------------------PQGSLLA  249 (397)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-------------------------------SSTTEEE
T ss_pred             EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-------------------------------CCCCEEE
Confidence            9999999999999999999999988   8   8888888876                               4555666


Q ss_pred             EEeCC---CcEEEEeCCCCceeeeecc-------------CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        431 SGSLD---TSIRVWEAESGNLRHTLMG-------------HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       431 ~~~~d---~~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                      +++.|   +.|++||+.+++.+..+.+             |...|.++.++  +++|++++.||.|++||+.+++.+..+
T Consensus       250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            66666   7777777777777777777             99999999985  679999999999999999999999988


Q ss_pred             c------CCCcc---------------cccEEEEEe--cC----------CEEEEEeCCCcEEEEECCCCc
Q psy18018        493 S------GRNKH---------------QSAVTCLQF--NS----------RFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       493 ~------~~~~~---------------~~~v~~~~~--~~----------~~l~~~~~d~~i~vwd~~~~~  530 (635)
                      .      .   |               ...|.+++|  ++          ++|++++.||.|++|++++++
T Consensus       330 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          330 NMHCDDIE---IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ECCGGGCS---SGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ecccCccc---chhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            8      5   5               889999999  45          699999999999999998763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=294.28  Aligned_cols=360  Identities=11%  Similarity=0.064  Sum_probs=231.0

Q ss_pred             eEEEEeeCCCcceEEEEe--cC---------CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC
Q psy18018        133 ECLHVLVGHLAAVRCVQY--DG---------KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD  201 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~--~~---------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (635)
                      +....+. +.+.|.+++|  ++         ++||+++.++..        .              ...+....+++++.
T Consensus       125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~--------------~~~~~~~~laS~s~  181 (524)
T 2j04_B          125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------E--------------PLNEHLEMFDKEKH  181 (524)
T ss_dssp             SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------
T ss_pred             cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------C--------------ccchhhhhhccCCC
Confidence            3334443 6789999999  54         789999876531        0              01345677899999


Q ss_pred             CCcEEEEECCCCeEE----EEEeCCCCCeEEEEeeC--------CEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018        202 DNTLKVWSATTGKCL----RTLIGHTGGVWSSQMAG--------NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI  269 (635)
Q Consensus       202 dg~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~--------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  269 (635)
                      |++|++||+.+++..    ..+.+|.+.|++++|..        .+|++++.||+|++||+...........        
T Consensus       182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~--------  253 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK--------  253 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE--------
T ss_pred             CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce--------
Confidence            999999999877642    45677889999999963        5999999999999999865421000000        


Q ss_pred             eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018        270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF  349 (635)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (635)
                          ....+                                                       ......+.....+++|
T Consensus       254 ----~~~~p-------------------------------------------------------~~~l~~h~~~v~sv~~  274 (524)
T 2j04_B          254 ----MCEKP-------------------------------------------------------SLTLSLADSLITTFDF  274 (524)
T ss_dssp             ----CCCSC-------------------------------------------------------SEEECCTTTCEEEEEE
T ss_pred             ----eecCc-------------------------------------------------------eEEEEcCCCCEEEEEe
Confidence                00000                                                       0000011233445667


Q ss_pred             EecCcEEEEecCCCeEEEEEccCCc-eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC-c
Q psy18018        350 QFDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG-V  427 (635)
Q Consensus       350 s~~~~~l~~~~~dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~  427 (635)
                      +++ ..|++|+.||.|++||+.++. +...+.+|...|.++++.                             +++++ .
T Consensus       275 s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~-----------------------------~s~~g~~  324 (524)
T 2j04_B          275 LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA-----------------------------YSDFEDT  324 (524)
T ss_dssp             SSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE-----------------------------CCTTSCC
T ss_pred             cCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE-----------------------------cCCCCCe
Confidence            765 489999999999999998764 455688999999988421                             11344 4


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeccCCc--cEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEE
Q psy18018        428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  503 (635)
                      +|++++.|++|++||+++++....+.+|..  .|.+++|+  ++.+++++.|++|++||++++.++..+.+   |...|+
T Consensus       325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~  401 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTIT  401 (524)
T ss_dssp             EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEE
T ss_pred             EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---CCCceE
Confidence            566666677777777766666666666643  35566664  56899999999999999999988888877   999999


Q ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC-
Q psy18018        504 CLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK-  580 (635)
Q Consensus       504 ~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~-  580 (635)
                      +++|  ++++|++|+.||+|++||+..+. .......   .   ...+...+.+++|+|+++.+. ...  .+++|+.. 
T Consensus       402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~---~---~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~  471 (524)
T 2j04_B          402 AIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNS---S---ATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV  471 (524)
T ss_dssp             EEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---
T ss_pred             EEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccC---c---cceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc
Confidence            9999  58999999999999999986542 1111100   0   000123567899999998653 222  24455443 


Q ss_pred             CCceEEeeeeccCCCCCceEEEEEeCCCCe---EEEEccCCCeeEeEEEEEeeec
Q psy18018        581 TGEFIRNLVSLDSGGSGGVVWRIRASETKL---VCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~---~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ++..+..+     .+|...|.+|+|+|++.   +||+|+.+|.  ++||.++.+.
T Consensus       472 ~g~~~~~l-----~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~--vrlw~l~~~~  519 (524)
T 2j04_B          472 NDVSKAKI-----DAHGINITCTKWNETSAGGKCYAFSNSAGL--LTLEYLSLEH  519 (524)
T ss_dssp             ---------------CCCSCCCEEECCSTTTTTEEEEECTTSE--EEEEECSCC-
T ss_pred             CCcceeee-----cCCCceEEEEECCCCCCccHHHHhhccCce--EEEEEccccc
Confidence            46666667     57889999999999964   9999999999  7888887664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=264.90  Aligned_cols=292  Identities=20%  Similarity=0.303  Sum_probs=232.5

Q ss_pred             CCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--C
Q psy18018         14 PIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--G   91 (635)
Q Consensus        14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~   91 (635)
                      +.+..+.|.||.+.| ++++|.     ++++|++++.++        .+.+||..+++....+..|.+.+ .+++|+  +
T Consensus         7 ~~~~~~~l~~h~~~v-~~~~~~-----~~~~l~s~~~dg--------~v~vw~~~~~~~~~~~~~~~~~v-~~~~~~~~~   71 (313)
T 3odt_A            7 GYQLSATLKGHDQDV-RDVVAV-----DDSKVASVSRDG--------TVRLWSKDDQWLGTVVYTGQGFL-NSVCYDSEK   71 (313)
T ss_dssp             CCEEEEEECCCSSCE-EEEEEE-----ETTEEEEEETTS--------EEEEEEESSSEEEEEEEECSSCE-EEEEEETTT
T ss_pred             cHHHHHHhhCCCCCc-EEEEec-----CCCEEEEEEcCC--------cEEEEECCCCEEEEEeecCCccE-EEEEECCCC
Confidence            345557899999999 999994     578899887654        44569999999999999999888 999999  9


Q ss_pred             CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCC
Q psy18018         92 SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus        92 ~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      ++|++++.|+.|++|++...                  .+.+++..+.+|...|.+++|+++++++++.||.|++||  .
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~  131 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFAT------------------SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E  131 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCC------------------TTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T
T ss_pred             CEEEEecCCCeEEEEEeeec------------------CCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C
Confidence            99999999999999998743                  345667788899999999999999999999999999999  5


Q ss_pred             ccceeeccccceeE-Eeeecc-CCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCCCeEEEEeeCCEEEEeeCceeEEEe
Q psy18018        172 EECLHAELQETEVE-LSHGYA-LRSRIVSGSDDNTLKVWSATTGKCLRTLIG-HTGGVWSSQMAGNIIISGSTDRTLKGW  248 (635)
Q Consensus       172 ~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~~w  248 (635)
                      ++....+..+.... .....+ .++.+++++.||.|++||  ..+....+.. |...+.++.                  
T Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~------------------  191 (313)
T 3odt_A          132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA------------------  191 (313)
T ss_dssp             TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEE------------------
T ss_pred             CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEE------------------
Confidence            55555554444333 333334 578888888899999998  4555555555 555555544                  


Q ss_pred             cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018        249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK  328 (635)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (635)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (313)
T 3odt_A          192 --------------------------------------------------------------------------------  191 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEE
Q psy18018        329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVW  408 (635)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iw  408 (635)
                                          ++|++. +++++.+|.|++||+.+++.+..+..|...+.+++++                
T Consensus       192 --------------------~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~----------------  234 (313)
T 3odt_A          192 --------------------VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL----------------  234 (313)
T ss_dssp             --------------------EEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------
T ss_pred             --------------------EcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe----------------
Confidence                                677777 8888889999999999999999999999999999886                


Q ss_pred             EccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCCcEEEEECCCCc
Q psy18018        409 DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       409 d~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  487 (635)
                                     |++ .+++++.|+.|++||+.+++....+..|...+.++.++++ .+++++.||.|++||+.+++
T Consensus       235 ---------------~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          235 ---------------PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             ---------------TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred             ---------------cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence                           344 3667777888888888888999999999999999998533 47789999999999999887


Q ss_pred             eeEEec
Q psy18018        488 CLQTLS  493 (635)
Q Consensus       488 ~~~~~~  493 (635)
                      ......
T Consensus       299 ~~~~~~  304 (313)
T 3odt_A          299 WASEDE  304 (313)
T ss_dssp             CCC---
T ss_pred             eeehhh
Confidence            665544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-33  Score=269.23  Aligned_cols=299  Identities=16%  Similarity=0.225  Sum_probs=238.7

Q ss_pred             eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee-ccCCCEEEEEeCCCcEEEEE
Q psy18018        133 ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG-YALRSRIVSGSDDNTLKVWS  209 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd  209 (635)
                      .....+.+|.++|++++|  ++++|++++.||.|++||+.+++.+..+..+...+..+. .+++.+|++++.||.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            445678899999999999  899999999999999999999999888876655544444 45678999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCc-----eeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018        210 ATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTD-----RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR  282 (635)
Q Consensus       210 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (635)
                      +.+++.+..+. |...+.++.|+  ++.+++++.+     |.|++||+......                          
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~--------------------------  155 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT--------------------------  155 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT--------------------------
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc--------------------------
Confidence            99999998887 88889888874  6777777777     77777775442100                          


Q ss_pred             ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018        283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD  362 (635)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  362 (635)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (369)
T 3zwl_B          156 --------------------------------------------------------------------------------  155 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeEEEEEccCCceEEeeeCCCc--ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEE
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRV  440 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~  440 (635)
                      ..+   ..........+..|..  .+.+++++                               |+++++++++.|+.|++
T Consensus       156 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          156 HEL---TKVSEEPIHKIITHEGLDAATVAGWS-------------------------------TKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             CCE---EEECSSCSEEEECCTTCCCEEEEEEC-------------------------------GGGCEEEEEETTSEEEE
T ss_pred             eee---cccccceeeeccCCcCccceeEEEEc-------------------------------CCCCEEEEEcCCCEEEE
Confidence            000   0011122233334444  55555554                               66777888888888888


Q ss_pred             EeCCC-CceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEE
Q psy18018        441 WEAES-GNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITS  515 (635)
Q Consensus       441 ~d~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~  515 (635)
                      ||+.+ ++....+..|...|.++.+  ++++|++++.|+.|++||+.+++.+..+.    +...+.++++  ++++++++
T Consensus       202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~  277 (369)
T 3zwl_B          202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILG  277 (369)
T ss_dssp             EETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEE
T ss_pred             EECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEe
Confidence            88888 6788888999999999998  46699999999999999999999888887    5677888888  68999999


Q ss_pred             eCCC--------------cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        516 SDDG--------------TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       516 ~~d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      +.++              .+++||+.+++....+..           |...|++++|+|++++|++++.||.|++|++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-----------HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ECCC-------------CEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             ecCCCceEEEEecCCCcceeEEEecCCCcchhheec-----------ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            9988              899999999987776654           688999999999999999999999999999987


Q ss_pred             CceEEe
Q psy18018        582 GEFIRN  587 (635)
Q Consensus       582 ~~~~~~  587 (635)
                      +.....
T Consensus       347 ~~~~~~  352 (369)
T 3zwl_B          347 SYFDFK  352 (369)
T ss_dssp             HHHTCC
T ss_pred             ccchhH
Confidence            664433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=278.10  Aligned_cols=344  Identities=17%  Similarity=0.232  Sum_probs=237.6

Q ss_pred             ceeeeeeecCCCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEE
Q psy18018         59 RSVEINWRTRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECL  135 (635)
Q Consensus        59 ~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~  135 (635)
                      +..+.+|+....+....+.+|.+.| ++++|+   +++||+++.||.|++||+.+++...       ...      ....
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~~------~~~~   87 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGI-NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-------YYT------CKAV   87 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCE-EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-------CEE------ECEE
T ss_pred             cCcceeeccccCcceeeeeccCCcE-EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-------eEe------cccc
Confidence            3345569999889999999999998 999997   7999999999999999998764210       000      0000


Q ss_pred             EE-----eeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc---CCCEEEEEeCCCc
Q psy18018        136 HV-----LVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA---LRSRIVSGSDDNT  204 (635)
Q Consensus       136 ~~-----l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~  204 (635)
                      ..     ..+|...|.+++|   ++.+|++++.||.|++||+.+++....+............+   .+..+++++.++.
T Consensus        88 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (408)
T 4a11_B           88 CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPK  167 (408)
T ss_dssp             EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSS
T ss_pred             ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCe
Confidence            11     1369999999999   56799999999999999999998887776665555554444   3448999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCeEEEEee--CC-EEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018        205 LKVWSATTGKCLRTLIGHTGGVWSSQMA--GN-IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ  281 (635)
Q Consensus       205 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (635)
                      |++||+.+++.+..+.+|...|.+++|+  ++ .+++++.||.|++||+......                         
T Consensus       168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-------------------------  222 (408)
T 4a11_B          168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC-------------------------  222 (408)
T ss_dssp             EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-------------------------
T ss_pred             EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-------------------------
Confidence            9999999999999999999999999995  44 5889999999999987653210                         


Q ss_pred             cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC
Q psy18018        282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL  361 (635)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  361 (635)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (408)
T 4a11_B          223 --------------------------------------------------------------------------------  222 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCeEEEEEc----cCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE--------------EE
Q psy18018        362 DTSIRVWEA----ESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF--------------RI  421 (635)
Q Consensus       362 dg~i~v~~~----~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~  421 (635)
                         +..++.    ...........|...|.+++|+  +.+|++++.||.+++||+.+++.....              ..
T Consensus       223 ---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          223 ---LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             ---SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             ---cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence               000000    0111223346788999999997  669999999999999999887643221              12


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ  499 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  499 (635)
                      ....+..+++++.++.|++||+.+++.+..+.+|...|.+++++  +++|++++.||.|++||+.+++.+.....   ..
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~  376 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE---TT  376 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------
T ss_pred             ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc---eE
Confidence            23345677888899999999999999999999999999999885  67999999999999999999887765543   22


Q ss_pred             ccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018        500 SAVTCLQF-NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       500 ~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~  528 (635)
                       ....+.. ....+.+.+.|+.+++|+...
T Consensus       377 -~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          377 -TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ------------------------------
T ss_pred             -eccccccccceeecccCccCceeecCCcc
Confidence             1222223 355566778899999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-33  Score=271.21  Aligned_cols=300  Identities=14%  Similarity=0.201  Sum_probs=235.3

Q ss_pred             CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEE
Q psy18018         18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIV   95 (635)
Q Consensus        18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~   95 (635)
                      ...|.||.+.| ++++|+    |+|++|++++.++        .+.+||..+++.+..+.+|.+.+ .+++|+  +++|+
T Consensus        25 ~~~l~~h~~~v-~~~~~s----~~~~~l~~~~~dg--------~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~   90 (369)
T 3zwl_B           25 AIKLTGHERPL-TQVKYN----KEGDLLFSCSKDS--------SASVWYSLNGERLGTLDGHTGTI-WSIDVDCFTKYCV   90 (369)
T ss_dssp             EEEEECCSSCE-EEEEEC----TTSCEEEEEESSS--------CEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEE
T ss_pred             cEEEEEeeceE-EEEEEc----CCCCEEEEEeCCC--------EEEEEeCCCchhhhhhhhcCCcE-EEEEEcCCCCEEE
Confidence            35789999999 999999    9999999997654        44469999999999999999988 999999  89999


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC-----CeEEEEe
Q psy18018         96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD-----YMVKIWN  168 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d-----g~v~iwd  168 (635)
                      +++.|+.|++||+.++                     +.+..+. |..+|.+++|  +++++++++.+     |.|++||
T Consensus        91 s~~~dg~i~iwd~~~~---------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d  148 (369)
T 3zwl_B           91 TGSADYSIKLWDVSNG---------------------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYE  148 (369)
T ss_dssp             EEETTTEEEEEETTTC---------------------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEE
T ss_pred             EEeCCCeEEEEECCCC---------------------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEE
Confidence            9999999988888754                     4455555 8889999999  89999999999     9999999


Q ss_pred             CCCccceee-----------ccccc---eeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEeeC
Q psy18018        169 PDTEECLHA-----------ELQET---EVELSHGYALRSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMAG  233 (635)
Q Consensus       169 ~~~~~~~~~-----------~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~  233 (635)
                      +........           ...+.   .+......+.+..+++++.||.|++||+.+ ++.+..+..|...|.+++   
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~---  225 (369)
T 3zwl_B          149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ---  225 (369)
T ss_dssp             EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE---
T ss_pred             ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE---
Confidence            887653221           11111   344445556678899999999999999988 788888888887777666   


Q ss_pred             CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccc
Q psy18018        234 NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR  313 (635)
Q Consensus       234 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (635)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (369)
T 3zwl_B          226 --------------------------------------------------------------------------------  225 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-
Q psy18018        314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-  392 (635)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-  392 (635)
                                                         |+|++.+|++++.||.|++||+.+++.+..+. +...+..++++ 
T Consensus       226 -----------------------------------~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~  269 (369)
T 3zwl_B          226 -----------------------------------FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP  269 (369)
T ss_dssp             -----------------------------------ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS
T ss_pred             -----------------------------------ECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC
Confidence                                               66677778888888888888888887777776 66788888887 


Q ss_pred             -CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEE
Q psy18018        393 -NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL  469 (635)
Q Consensus       393 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l  469 (635)
                       +..+++++.++...+|....                   ......+++||..+++.+..+.+|...|.+++++  +++|
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~-------------------~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSA-------------------NEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             SSSEEEEEECCC--------------------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEeecCCCceEEEEec-------------------CCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence             66888888888776665432                   1123479999999999999999999999999984  6699


Q ss_pred             EEEeCCCcEEEEECCCCceeEE
Q psy18018        470 VSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       470 ~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                      ++++.||.|++|++..+.....
T Consensus       331 ~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             EEEETTSEEEEEEECHHHHTCC
T ss_pred             EEEcCCCeEEEEECccccchhH
Confidence            9999999999999987654333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3e-33  Score=272.46  Aligned_cols=293  Identities=9%  Similarity=0.132  Sum_probs=217.4

Q ss_pred             EeCCCCeEEEEeeCCCcceEEEEe--cC-CEEEEEeCCCeEEEEeCCCccceeecc--ccceeEEeeeccC--CCEEEEE
Q psy18018        127 WHIESGECLHVLVGHLAAVRCVQY--DG-KLVVSGAYDYMVKIWNPDTEECLHAEL--QETEVELSHGYAL--RSRIVSG  199 (635)
Q Consensus       127 wd~~~~~~~~~l~~h~~~v~~l~~--~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~--~~~l~~~  199 (635)
                      |++...+....+.+|...|++++|  ++ ++|++++.||.|++||+.+++....+.  .+...+..+.+.+  +..++++
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            344566778899999999999999  66 899999999999999999888766554  3444444444443  5789999


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCC---CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeee
Q psy18018        200 SDDNTLKVWSATTGKCLRTLIGHT---GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLI  276 (635)
Q Consensus       200 ~~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (635)
                      +.|+.|++||+.+ ..+..+..|.   ..|.+                                                
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~------------------------------------------------  168 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCC------------------------------------------------  168 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCCSSCCEEE------------------------------------------------
T ss_pred             eCCCEEEEEECCC-CceEEEeccCCCCCCeEE------------------------------------------------
Confidence            9999999999875 4444444332   33333                                                


Q ss_pred             ccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE
Q psy18018        277 EPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV  356 (635)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  356 (635)
                                                                                            ++++|++.+|
T Consensus       169 ----------------------------------------------------------------------~~~~~~~~~l  178 (383)
T 3ei3_B          169 ----------------------------------------------------------------------VDVSVSRQML  178 (383)
T ss_dssp             ----------------------------------------------------------------------EEEETTTTEE
T ss_pred             ----------------------------------------------------------------------EEECCCCCEE
Confidence                                                                                  3478888899


Q ss_pred             EEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeC--C-EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe
Q psy18018        357 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS  433 (635)
Q Consensus       357 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~  433 (635)
                      ++|+.|+.|++||+ +++.+..+..|...|.+++|++  . ++++++.|+.|++||+.+.+.                  
T Consensus       179 ~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------  239 (383)
T 3ei3_B          179 ATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD------------------  239 (383)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS------------------
T ss_pred             EEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc------------------
Confidence            99999999999998 5778888999999999999873  2 455555555555544443210                  


Q ss_pred             CCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCC----ccc-------
Q psy18018        434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRN----KHQ-------  499 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~-------  499 (635)
                                 .+..+..+ +|...|.++.+++   ++|++++.|+.|++||+.+++....+..+.    .|.       
T Consensus       240 -----------~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (383)
T 3ei3_B          240 -----------KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATW  307 (383)
T ss_dssp             -----------TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEE
T ss_pred             -----------ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEec
Confidence                       04445555 6889999999855   799999999999999999888766665421    111       


Q ss_pred             ---ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        500 ---SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       500 ---~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                         ..+..+++  ++++  +++.|+.|++||+.+++.+..+..+         .+...+.+++|+|++++|++++ |+.|
T Consensus       308 ~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~---------~~~~~~~~~~~s~~g~~l~s~s-d~~i  375 (383)
T 3ei3_B          308 HPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP---------NAAGIISLNKFSPTGDVLASGM-GFNI  375 (383)
T ss_dssp             CSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT---------TBCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred             cCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC---------CCCceEEEEEEecCccEEEEec-CCcE
Confidence               23334444  4555  7789999999999999987776542         1356677789999999999997 9999


Q ss_pred             EEEeCCC
Q psy18018        575 KLWDVKT  581 (635)
Q Consensus       575 ~iwd~~~  581 (635)
                      +|||+++
T Consensus       376 ~iw~~~~  382 (383)
T 3ei3_B          376 LIWNRED  382 (383)
T ss_dssp             EEEECC-
T ss_pred             EEEecCC
Confidence            9999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-33  Score=274.24  Aligned_cols=252  Identities=14%  Similarity=0.234  Sum_probs=199.1

Q ss_pred             CCCceEEEEec----CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCccee
Q psy18018        342 HVPDLFGFQFD----GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKL  417 (635)
Q Consensus       342 ~~~~~~~~s~~----~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~  417 (635)
                      .....++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++                        
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------------------------  125 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP------------------------  125 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS------------------------
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC------------------------
Confidence            34556789998    67999999999999999999999999999999999999862                        


Q ss_pred             EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee---ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                            .++.+|++++.|+.|++||+.+++....+   .+|...|.++.++  ++++++++.||.|++||+.+++....+
T Consensus       126 ------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  199 (366)
T 3k26_A          126 ------RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI  199 (366)
T ss_dssp             ------SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred             ------CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence                  05566777777778888888888877777   6899999999985  669999999999999999977654332


Q ss_pred             cC-------------------------CCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeecccee---cCce
Q psy18018        493 SG-------------------------RNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI---LNPF  544 (635)
Q Consensus       493 ~~-------------------------~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~  544 (635)
                      ..                         ...|...|.+++|+++++++++.|+.|++||+.+++..........   ....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence            21                         1127888999999999999999999999999988754211111000   0112


Q ss_pred             eEEeccCceecccccCC--CeEEEEecCCCeEEEEeCCCCceE----EeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018        545 YFLIYSQPLLCPHLQFN--SRFVITSSDDGTVKLWDVKTGEFI----RNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                      ....|...|++++|+|+  +++|++++.||.|++||+.+++.+    ..+.   ...+...|++++|+|++++|++++.|
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc---ccccCCceEEEEeCCCCCeEEEEeCC
Confidence            23447788999999999  999999999999999999988643    2442   12237899999999999999999999


Q ss_pred             CeeEeEEEEEee
Q psy18018        619 GTEETKLLVLDF  630 (635)
Q Consensus       619 g~~~~~l~~~d~  630 (635)
                      |.    |..||+
T Consensus       357 g~----i~iwd~  364 (366)
T 3k26_A          357 AS----IWRWDR  364 (366)
T ss_dssp             SE----EEEEEC
T ss_pred             CE----EEEEEe
Confidence            98    555554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.2e-33  Score=272.17  Aligned_cols=225  Identities=19%  Similarity=0.383  Sum_probs=182.8

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcce----------eE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKK----------LM  418 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~  418 (635)
                      |+|+|++|++|+.||.|++||+.+++.+..+.+|...+.++++++..+++++.|+.+++||.......          ..
T Consensus       155 fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~  234 (420)
T 4gga_A          155 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  234 (420)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             ECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence            67777888888888888888888888888888888888888888888888888888888887654332          22


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCc----eeeeeccCCccEEEEEec---CCEEEE--EeCCCcEEEEECCCCcee
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGN----LRHTLMGHQSLTSGMELR---NNILVS--GNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~---~~~l~s--~~~dg~i~iwd~~~~~~~  489 (635)
                      ...+.++++++++++.|+.+++|+..+++    .+.....|...|.++.+.   +.++++  |+.|++|++||+.++++.
T Consensus       235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~  314 (420)
T 4gga_A          235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  314 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred             eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence            33467899999999999999999998764    356677899999999984   346665  457999999999999999


Q ss_pred             EEecCCCcccccEEEEEe--cCCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        490 QTLSGRNKHQSAVTCLQF--NSRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      ..+..    ...+.++.+  +++.+++++  .|+.|++||+.+++.+..+.+           |...|++++|+|||++|
T Consensus       315 ~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-----------H~~~V~~l~~spdg~~l  379 (420)
T 4gga_A          315 SAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSPDGATV  379 (420)
T ss_dssp             EEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSCE
T ss_pred             eeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCCCEE
Confidence            88874    455677777  577777655  799999999999998877765           78899999999999999


Q ss_pred             EEecCCCeEEEEeCCCCceEEee
Q psy18018        566 ITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      ++|+.|++|+|||+.+....+..
T Consensus       380 ~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          380 ASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             EEEETTTEEEEECCSCSSCC---
T ss_pred             EEEecCCeEEEEECCCCCccchh
Confidence            99999999999999876655444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-34  Score=283.80  Aligned_cols=308  Identities=13%  Similarity=0.134  Sum_probs=204.8

Q ss_pred             CCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcce
Q psy18018         69 PIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAV  145 (635)
Q Consensus        69 ~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v  145 (635)
                      ..+......+|..+| +||+|+   +++||+|+.||.|+|||+.+++                   ......+.+|.++|
T Consensus       108 ~~~~~~~~~~~~~~V-~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-------------------~~~~~~~~gH~~~V  167 (435)
T 4e54_B          108 SYRILQKAAPFDRRA-TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-------------------KPTFIKGIGAGGSI  167 (435)
T ss_dssp             TTTSCCEEEECSSCE-EEEEECSSCTTCEEEEETTSCEEEECSSCCS-------------------CCEEECCCSSSCCC
T ss_pred             ceeecccCCCCCCCE-EEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-------------------ceeEEEccCCCCCE
Confidence            445556778898888 999998   6799999999999999987553                   23345567999999


Q ss_pred             EEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccc---eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        146 RCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQET---EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       146 ~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      ++|+|   ++++|++++.||+|++||++++........+.   .+......+++.+|++|+.||.|++||+. ++.+..+
T Consensus       168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~  246 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNL  246 (435)
T ss_dssp             CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCS
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEE
Confidence            99999   68899999999999999998765433222221   12223344567889999999999999985 4566778


Q ss_pred             eCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018        220 IGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV  296 (635)
Q Consensus       220 ~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (635)
                      .+|...|.+++|+   ..++++++.|+.|++||                                               
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd-----------------------------------------------  279 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-----------------------------------------------  279 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE-----------------------------------------------
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEe-----------------------------------------------
Confidence            8898888888763   12444555555555554                                               


Q ss_pred             EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceE
Q psy18018        297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR  376 (635)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~  376 (635)
                                                                                               +.+.+..
T Consensus       280 -------------------------------------------------------------------------~~~~~~~  286 (435)
T 4e54_B          280 -------------------------------------------------------------------------LRQVRGK  286 (435)
T ss_dssp             -------------------------------------------------------------------------TTTCCSS
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     4433221


Q ss_pred             ---EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec
Q psy18018        377 ---HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  453 (635)
Q Consensus       377 ---~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  453 (635)
                         ....+|...|.+++|+                               |++++|++++.|+.|++||+.++.....+.
T Consensus       287 ~~~~~~~~h~~~v~~~~~s-------------------------------pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          287 ASFLYSLPHRHPVNAACFS-------------------------------PDGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             SCCSBCCBCSSCEEECCBC-------------------------------TTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             ceEEEeeeccccccceeEC-------------------------------CCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence               1234677888888775                               566677777777778888877777766666


Q ss_pred             cCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEE-EEeCCCcEEEEECCCCc
Q psy18018        454 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       454 ~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~~~  530 (635)
                      .|......               .        ...+.....   ....+..+.+  ++..++ ++..++.|++||..+++
T Consensus       336 ~~~~~~~~---------------~--------~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~  389 (435)
T 4e54_B          336 PHPHRHFQ---------------H--------LTPIKAAWH---PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK  389 (435)
T ss_dssp             CCCCCCCS---------------S--------SCCCBCEEC---SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred             cccccccc---------------c--------ceeEEEEEc---CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence            65432100               0        000000000   1111122222  343333 34455789999999998


Q ss_pred             eeeeeccceecCceeEEeccCceecc-cccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        531 FSTPLMSSFILNPFYFLIYSQPLLCP-HLQFNSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                      .+..+...          |...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus       390 ~~~~l~~~----------~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          390 MMCQLYDP----------ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEEEECCS----------SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEEEeCC----------CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            87766432          67788887 6999999999886 789999999998754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-32  Score=268.54  Aligned_cols=292  Identities=21%  Similarity=0.355  Sum_probs=229.4

Q ss_pred             EEEeeCCCcc--eEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccc--cceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018        135 LHVLVGHLAA--VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQ--ETEVELSHGYALRSRIVSGSDDNTLKVWSA  210 (635)
Q Consensus       135 ~~~l~~h~~~--v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  210 (635)
                      +....+|...  +.++.|++..+++++.|+.|++||+.+++.......  ...+......+++.+|++++.||.|++||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            3344466654  556777778899999999999999999987766554  344555555667889999999999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018        211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR  290 (635)
Q Consensus       211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (635)
                      .+++.+..+.+|...|.++.|+++.+++++.||.|++||+..                                      
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~--------------------------------------  205 (401)
T 4aez_A          164 ESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI--------------------------------------  205 (401)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTS--------------------------------------
T ss_pred             cCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEeccc--------------------------------------
Confidence            999999999999999999998777777777777777776432                                      


Q ss_pred             ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018        291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA  370 (635)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~  370 (635)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (401)
T 4aez_A          206 --------------------------------------------------------------------------------  205 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018        371 ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH  450 (635)
Q Consensus       371 ~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  450 (635)
                       .+..+..+.+|...|.+++|+                               |++++|++++.|+.|++||+.+++...
T Consensus       206 -~~~~~~~~~~~~~~v~~~~~~-------------------------------~~~~~l~s~~~d~~v~iwd~~~~~~~~  253 (401)
T 4aez_A          206 -ANHQIGTLQGHSSEVCGLAWR-------------------------------SDGLQLASGGNDNVVQIWDARSSIPKF  253 (401)
T ss_dssp             -SSCEEEEEECCSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred             -CcceeeEEcCCCCCeeEEEEc-------------------------------CCCCEEEEEeCCCeEEEccCCCCCccE
Confidence             123345567788888888875                               566677777788888888888888888


Q ss_pred             eeccCCccEEEEEecC---CEEEEEe--CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEE--EeCCCcE
Q psy18018        451 TLMGHQSLTSGMELRN---NILVSGN--ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT--SSDDGTV  521 (635)
Q Consensus       451 ~~~~~~~~v~~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~d~~i  521 (635)
                      .+..|...|.++++++   .++++++  .|+.|++||+.+++.+..+.    +...+.+++|  +++++++  |+.||.|
T Consensus       254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i  329 (401)
T 4aez_A          254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNL  329 (401)
T ss_dssp             EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEE
T ss_pred             EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcE
Confidence            8999999999999964   4777765  79999999999999988886    5678999999  6889988  4489999


Q ss_pred             EEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        522 KLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       522 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ++||+.+++......         ...|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus       330 ~v~~~~~~~~~~~~~---------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          330 SIWSYSSSGLTKQVD---------IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEEEEETTEEEEEEE---------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             EEEecCCccceeEEE---------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            999999876544322         22478899999999999999999999999999999998877653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.7e-33  Score=271.04  Aligned_cols=305  Identities=11%  Similarity=0.148  Sum_probs=208.0

Q ss_pred             eeeecCCCCCCceeeccCcceEEEEEEc--C-CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018         63 INWRTRPIKDPKVLKGHDDHVITCLQFS--G-SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV  139 (635)
Q Consensus        63 ~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~-~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~  139 (635)
                      .+|+..+.+..+.+.+|.+.| ++++|+  + ++||+|+.|+.|++||+.+++.                   .....+.
T Consensus        56 ~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------~~~~~~~  115 (383)
T 3ei3_B           56 FIRSLKSYKLHRTASPFDRRV-TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-------------------TSFIQGM  115 (383)
T ss_dssp             HHHHHTTCEEEEEECCCSSCE-EEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-------------------EEEECCC
T ss_pred             ccccccccceEEeccCCCCCE-EEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-------------------ceeeecC
Confidence            347778888888999999988 999999  6 8999999999999999875532                   1222334


Q ss_pred             CCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeecccc----ceeEEeeeccCCCEEEEEeCCCcEEEEECCC
Q psy18018        140 GHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQE----TEVELSHGYALRSRIVSGSDDNTLKVWSATT  212 (635)
Q Consensus       140 ~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  212 (635)
                      +|...|.+++|   ++++|++++.|+.|++||+.+.. +..+...    ..+......+++..+++++.|+.|++||+ +
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~  193 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-D  193 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-T
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-C
Confidence            79999999999   46899999999999999999643 3333222    33555566677889999999999999998 6


Q ss_pred             CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018        213 GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL  292 (635)
Q Consensus       213 ~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (635)
                      ++++..+.+|...|.+++|+                                                            
T Consensus       194 ~~~~~~~~~h~~~v~~~~~~------------------------------------------------------------  213 (383)
T 3ei3_B          194 GHEIFKEKLHKAKVTHAEFN------------------------------------------------------------  213 (383)
T ss_dssp             SCEEEEEECSSSCEEEEEEC------------------------------------------------------------
T ss_pred             CCEEEEeccCCCcEEEEEEC------------------------------------------------------------
Confidence            78888999999999888863                                                            


Q ss_pred             eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc-EEEEecCCCeEEEEEcc
Q psy18018        293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV-HVVSGSLDTSIRVWEAE  371 (635)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~v~~~~  371 (635)
                                                                                |++. ++++++.|+.|++||+.
T Consensus       214 ----------------------------------------------------------~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          214 ----------------------------------------------------------PRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             ----------------------------------------------------------SSCTTEEEEEETTSEEEEEEGG
T ss_pred             ----------------------------------------------------------CCCCCEEEEEeCCCEEEEEeCC
Confidence                                                                      3333 34444444444444444


Q ss_pred             C----CceEEeeeCCCcceeEEEEeC---CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCC
Q psy18018        372 S----GNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAE  444 (635)
Q Consensus       372 ~----~~~~~~~~~~~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  444 (635)
                      +    +..+..+ +|...|.+++|++   .+|++++.|+.|++||+.+++...........              .+. .
T Consensus       236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------~~~-~  299 (383)
T 3ei3_B          236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR--------------QFQ-H  299 (383)
T ss_dssp             GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC--------------CCT-T
T ss_pred             CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc--------------ccc-c
Confidence            3    3344444 5888899998864   46666666666666666554433221110000              000 0


Q ss_pred             CCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCc
Q psy18018        445 SGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT  520 (635)
Q Consensus       445 ~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~  520 (635)
                      .......+. ....+..+.+  ++.+  +++.|+.|++||+.+++.+..+..+. +...+.+++|  ++++|++++ |+.
T Consensus       300 ~~~~~~~~~-p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          300 LTPIKATWH-PMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             SCCCCCEEC-SSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccceEEecc-CCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-CCc
Confidence            000000010 1123333433  4445  78899999999999999999887522 4566777677  689999997 999


Q ss_pred             EEEEECCC
Q psy18018        521 VKLWDVKT  528 (635)
Q Consensus       521 i~vwd~~~  528 (635)
                      |++||+++
T Consensus       375 i~iw~~~~  382 (383)
T 3ei3_B          375 ILIWNRED  382 (383)
T ss_dssp             EEEEECC-
T ss_pred             EEEEecCC
Confidence            99999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=272.04  Aligned_cols=335  Identities=18%  Similarity=0.188  Sum_probs=221.0

Q ss_pred             eeecCCCCCCccccccccceEEEEEecCCCCC-CCceeecCCcchheeeccceeeeeeecCCCCCCceee----------
Q psy18018          9 NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFP-CESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLK----------   77 (635)
Q Consensus         9 ~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~-~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~----------   77 (635)
                      .|+.+..+....+.+|.+.| +|++|+    | ++++||+++.++.        +.+||..+++....+.          
T Consensus        27 v~~~~~~~~~~~~~~h~~~v-~~~~~s----~~~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~~~~~~~~~~~~   93 (408)
T 4a11_B           27 VLGLELNKDRDVERIHGGGI-NTLDIE----PVEGRYMLSGGSDGV--------IVLYDLENSSRQSYYTCKAVCSIGRD   93 (408)
T ss_dssp             HHTEEECTTEEECCCCSSCE-EEEEEC----TTTCCEEEEEETTSC--------EEEEECCCCSSSSCEEECEEEEECTT
T ss_pred             eeccccCcceeeeeccCCcE-EEEEEe----cCCCCEEEEEcCCCe--------EEEEECCCCcccceEecccccccccc
Confidence            45555666778899999999 999999    8 9999999986544        4469999998887765          


Q ss_pred             ---ccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-
Q psy18018         78 ---GHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-  150 (635)
Q Consensus        78 ---~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-  150 (635)
                         +|...+ .+++|+   +++|++++.|+.|++||+.++                     +....+. +...+.++.+ 
T Consensus        94 ~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------------~~~~~~~-~~~~~~~~~~~  150 (408)
T 4a11_B           94 HPDVHRYSV-ETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---------------------QTADVFN-FEETVYSHHMS  150 (408)
T ss_dssp             CTTCCSSCE-EEEEECTTCTTCEEEEETTSEEEEEETTTT---------------------EEEEEEE-CSSCEEEEEEC
T ss_pred             ccccCCCcE-EEEEEccCCCcEEEEEeCCCeEEEeeCCCC---------------------ccceecc-CCCceeeeEee
Confidence               688888 999998   678999999998888887754                     4444443 6778888888 


Q ss_pred             ----cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc-CCC-EEEEEeCCCcEEEEECCCCe-EEEEE----
Q psy18018        151 ----DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA-LRS-RIVSGSDDNTLKVWSATTGK-CLRTL----  219 (635)
Q Consensus       151 ----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~----  219 (635)
                          ++.++++++.||.|++||+.+++.+..+..+........+. .+. .+++++.||.|++||+.++. ++..+    
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~  230 (408)
T 4a11_B          151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN  230 (408)
T ss_dssp             SSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred             cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence                45599999999999999999999888887665555555544 445 58899999999999998765 44444    


Q ss_pred             -----------eCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceee
Q psy18018        220 -----------IGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFIS  286 (635)
Q Consensus       220 -----------~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (635)
                                 .+|...|.+++|+  +++|++++.||.|++||+.+...........                       
T Consensus       231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------------  287 (408)
T 4a11_B          231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV-----------------------  287 (408)
T ss_dssp             TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC-----------------------
T ss_pred             cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc-----------------------
Confidence                       5789999999994  7899999999999999988754211100000                       


Q ss_pred             ccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEE
Q psy18018        287 LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIR  366 (635)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  366 (635)
                                                                        ................+..+++++.++.|+
T Consensus       288 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  317 (408)
T 4a11_B          288 --------------------------------------------------CNNSKKGLKFTVSCGCSSEFVFVPYGSTIA  317 (408)
T ss_dssp             --------------------------------------------------CCCCSSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred             --------------------------------------------------cccccccceeEEecCCCceEEEEecCCEEE
Confidence                                                              000000111111222455677778899999


Q ss_pred             EEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC
Q psy18018        367 VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG  446 (635)
Q Consensus       367 v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  446 (635)
                      +||+.+++.+..+.+|...|.+++|+                               |++++|++++.||.|++||+.++
T Consensus       318 v~d~~~~~~~~~~~~~~~~v~~~~~s-------------------------------~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          318 VYTVYSGEQITMLKGHYKTVDCCVFQ-------------------------------SNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEE-------------------------------TTTTEEEEEETTSCEEEEEECC-
T ss_pred             EEECcCCcceeeeccCCCeEEEEEEc-------------------------------CCCCEEEEECCCCeEEEEeCCCC
Confidence            99999999999999999999999987                               34445555555555555555555


Q ss_pred             ceeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECC
Q psy18018        447 NLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIV  484 (635)
Q Consensus       447 ~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~  484 (635)
                      +.+.....+.... .+.. ....+.+.+.++.+++|+..
T Consensus       367 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          367 EPVPDDDETTTKS-QLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ---------------------------------------
T ss_pred             CccCCCCceEecc-ccccccceeecccCccCceeecCCc
Confidence            5444333222211 1222 33455567778888888754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6e-33  Score=269.61  Aligned_cols=313  Identities=18%  Similarity=0.171  Sum_probs=227.0

Q ss_pred             cccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc--CCEEE
Q psy18018         20 VLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS--GSRIV   95 (635)
Q Consensus        20 ~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s--~~~l~   95 (635)
                      .+..|.++| ++++|+    |+|++||+++.++        .+.+||..+++  .+..+.+|.+.+ .+++|+  +++|+
T Consensus         3 ~~~~~~~~i-~~~~~s----~~~~~l~~~~~d~--------~v~i~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~   68 (372)
T 1k8k_C            3 YHSFLVEPI-SCHAWN----KDRTQIAICPNNH--------EVHIYEKSGNKWVQVHELKEHNGQV-TGVDWAPDSNRIV   68 (372)
T ss_dssp             EEESCSSCC-CEEEEC----TTSSEEEEECSSS--------EEEEEEEETTEEEEEEEEECCSSCE-EEEEEETTTTEEE
T ss_pred             eecccCCCe-EEEEEC----CCCCEEEEEeCCC--------EEEEEeCCCCcEEeeeeecCCCCcc-cEEEEeCCCCEEE
Confidence            456799998 999999    9999999997644        44569999987  889999999988 999999  89999


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc
Q psy18018         96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE  173 (635)
Q Consensus        96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~  173 (635)
                      +++.|+.|++||+.+++.                   .....+..|...|.+++|  ++++|++++.||.|++||+..++
T Consensus        69 ~~~~dg~i~vwd~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           69 TCGTDRNAYVWTLKGRTW-------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             EEETTSCEEEEEEETTEE-------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             EEcCCCeEEEEECCCCee-------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            999999999998865431                   223345689999999999  89999999999999999998876


Q ss_pred             c---eeec-cc-cceeEEeeeccCCCEEEEEeCCCcEEEEECC------------------CCeEEEEEeCCCCCeEEEE
Q psy18018        174 C---LHAE-LQ-ETEVELSHGYALRSRIVSGSDDNTLKVWSAT------------------TGKCLRTLIGHTGGVWSSQ  230 (635)
Q Consensus       174 ~---~~~~-~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~------------------~~~~~~~~~~h~~~v~~~~  230 (635)
                      .   .... .. ...+......+.+.++++++.||.|++||+.                  .++++..+.+|...|.+  
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--  207 (372)
T 1k8k_C          130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG--  207 (372)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE--
T ss_pred             cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE--
Confidence            3   2222 22 2344445555667788888899999999964                  33444444444444433  


Q ss_pred             eeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        231 MAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       231 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (372)
T 1k8k_C          208 --------------------------------------------------------------------------------  207 (372)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                          ++|+|++.+|++++.||.|++||+.+++.+..+..|...+.+++
T Consensus       208 ------------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  251 (372)
T 1k8k_C          208 ------------------------------------VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  251 (372)
T ss_dssp             ------------------------------------EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             ------------------------------------EEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence                                                44778888899999999999999999999999999999999999


Q ss_pred             Ee-CCEEEEEeCCCcEEEEEccC--CcceeEEEEEeeCCcEEEEEeCCCcEEEE---eCCCCcee------eee-ccCCc
Q psy18018        391 LR-NNILVSGNADSTVKVWDIVS--GTKKLMFRICLFDGVHVVSGSLDTSIRVW---EAESGNLR------HTL-MGHQS  457 (635)
Q Consensus       391 ~~-~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~---d~~~~~~~------~~~-~~~~~  457 (635)
                      |+ ...+++++.|+.+++|++..  +.......   .+...-........+.+|   +.. +...      ..+ .+|..
T Consensus       252 ~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~  327 (372)
T 1k8k_C          252 FITESSLVAAGHDCFPVLFTYDSAAGKLSFGGR---LDVPKQSSQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKN  327 (372)
T ss_dssp             EEETTEEEEEETTSSCEEEEEETTTTEEEECCC---CCCC--------CHHHHHHHCCCC-C---------CCCSSSSSS
T ss_pred             EecCCCEEEEEeCCeEEEEEccCcCceEEEeec---cCccccchhhhcchhhhhhhcccc-cccccCccccccccccccC
Confidence            97 33444444999999999987  32111100   011111111223334445   422 2222      333 48999


Q ss_pred             cEEEEEe---cC---CEEEEEeCCCcEEEEECCCCc
Q psy18018        458 LTSGMEL---RN---NILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       458 ~v~~~~~---~~---~~l~s~~~dg~i~iwd~~~~~  487 (635)
                      .|.++++   ++   ++|++++.||.|++||+.+++
T Consensus       328 ~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          328 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             CcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            9999985   34   799999999999999987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-32  Score=265.51  Aligned_cols=231  Identities=19%  Similarity=0.295  Sum_probs=192.3

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      ++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+++.+++++.||.|++||+..              
T Consensus       140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~--------------  205 (401)
T 4aez_A          140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI--------------  205 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTS--------------
T ss_pred             EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEeccc--------------
Confidence            447888889999999999999999999999999999999999999877777777666666665542              


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  504 (635)
                                        .......+.+|...|.++.++  ++++++++.|+.|++||+.+++.+..+..   |...|.+
T Consensus       206 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~  264 (401)
T 4aez_A          206 ------------------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---HNAAVKA  264 (401)
T ss_dssp             ------------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC---CSSCCCE
T ss_pred             ------------------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC---CcceEEE
Confidence                              234566778899999999984  66999999999999999999999888876   8889999


Q ss_pred             EEec---CCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE--ecCCCeEEEE
Q psy18018        505 LQFN---SRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT--SSDDGTVKLW  577 (635)
Q Consensus       505 ~~~~---~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~v~iw  577 (635)
                      ++|+   ..++++++  .|+.|++||+.+++....+.            +...|.+++|+|+++++++  |+.||.|++|
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~  332 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW  332 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence            9993   46777765  79999999999988766553            4668999999999999999  5589999999


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      |+.+++.......   .+|...|.+++|+|||++|++++.||.    |..||+.
T Consensus       333 ~~~~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~----i~iw~~~  379 (401)
T 4aez_A          333 SYSSSGLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDEN----LKFWRVY  379 (401)
T ss_dssp             EEETTEEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSE----EEEEECC
T ss_pred             ecCCccceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCc----EEEEECC
Confidence            9999776655422   478899999999999999999999998    4445544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.1e-32  Score=259.45  Aligned_cols=272  Identities=11%  Similarity=0.143  Sum_probs=213.2

Q ss_pred             cCCCceEEEEecCcEEEEecCCC-------eEEEEEccCCce----------EEeeeCCCcceeEEEEeCCEEEEEe---
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDT-------SIRVWEAESGNL----------RHTLMGHQSLTSGMELRNNILVSGN---  400 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg-------~i~v~~~~~~~~----------~~~~~~~~~~v~~l~~~~~~l~s~~---  400 (635)
                      +.+..+++|+||+++|++|+.+.       .|++|++..+..          ...+..|...+.+++++++.++++.   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            34567889999999999987543       599999875431          1346688889999999988888764   


Q ss_pred             --------CCCcEEEEEccCCcce------------------eEEEEEeeCCcEEEEEe--CCCcEEEEeCCCCceeeee
Q psy18018        401 --------ADSTVKVWDIVSGTKK------------------LMFRICLFDGVHVVSGS--LDTSIRVWEAESGNLRHTL  452 (635)
Q Consensus       401 --------~dg~i~iwd~~~~~~~------------------~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~  452 (635)
                              .|+.+++|++......                  .....++|||+++++++  .|++|++||+++++.+..+
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~  173 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI  173 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence                    4778999998765322                  22345899999987554  7899999999999998888


Q ss_pred             ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC----cEEEE
Q psy18018        453 MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG----TVKLW  524 (635)
Q Consensus       453 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~vw  524 (635)
                      . |...|.+++|+  ++++++++.+ .+.+|+..+++.+..... ..|...|.+++|  +++++++++.|+    .+++|
T Consensus       174 ~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          174 E-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD-FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             E-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC-CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             C-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec-CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            6 77789988884  6688888755 577777777776554332 237788999988  789999999887    68889


Q ss_pred             ECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018        525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       525 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                      ++..........       .....|...|++++|||||++||+|+.|++|+|||+++++++..+.    .+|..+|++|+
T Consensus       251 ~~~~~~~~~~~~-------~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~----~gH~~~V~~v~  319 (365)
T 4h5i_A          251 SIKSGNTSVLRS-------KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK----QAHSFAITEVT  319 (365)
T ss_dssp             EEETTEEEEEEE-------EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET----TSSSSCEEEEE
T ss_pred             ccccceecceee-------eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec----CcccCCEEEEE
Confidence            987665322111       1223467889999999999999999999999999999999998763    58999999999


Q ss_pred             eCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        605 ASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       605 ~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      |||||++||+|+.|++  ++||.+
T Consensus       320 fSpdg~~laS~S~D~t--vrvw~i  341 (365)
T 4h5i_A          320 ISPDSTYVASVSAANT--IHIIKL  341 (365)
T ss_dssp             ECTTSCEEEEEETTSE--EEEEEC
T ss_pred             ECCCCCEEEEEeCCCe--EEEEEc
Confidence            9999999999999999  566554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=266.19  Aligned_cols=310  Identities=16%  Similarity=0.195  Sum_probs=228.1

Q ss_pred             EEEeeCCCcceEEEEe--cCCE-EEEEeC---CCeEEEEeCCCccceeecc-cc-ceeEEeeeccC---CCEEEEEeCCC
Q psy18018        135 LHVLVGHLAAVRCVQY--DGKL-VVSGAY---DYMVKIWNPDTEECLHAEL-QE-TEVELSHGYAL---RSRIVSGSDDN  203 (635)
Q Consensus       135 ~~~l~~h~~~v~~l~~--~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~---~~~l~~~~~dg  203 (635)
                      ...+.+|...|.+++|  ++.. +++++.   ||.|++||+.+++...... .+ ..+....+.+.   +..+++++.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            3456789999999999  6654 456665   9999999999887654322 33 34444444444   48999999999


Q ss_pred             cEEEEECCCCe-EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018        204 TLKVWSATTGK-CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR  282 (635)
Q Consensus       204 ~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (635)
                      .|++||+.+++ ++..+.+|...|.++.+...                                                
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------------------  122 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG------------------------------------------------  122 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESG------------------------------------------------
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccc------------------------------------------------
Confidence            99999999988 88899999999998864210                                                


Q ss_pred             ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018        283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD  362 (635)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  362 (635)
                                                                                      ++++|++++|++++.|
T Consensus       123 ----------------------------------------------------------------~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A          123 ----------------------------------------------------------------LGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             ----------------------------------------------------------------GGCC-CCCEEEEEETT
T ss_pred             ----------------------------------------------------------------cccCCCccEEEEEeCC
Confidence                                                                            1267788888888888


Q ss_pred             CeEEEEEccCCc-eEEeeeCCCc----ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCc
Q psy18018        363 TSIRVWEAESGN-LRHTLMGHQS----LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTS  437 (635)
Q Consensus       363 g~i~v~~~~~~~-~~~~~~~~~~----~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~  437 (635)
                      |.|++||+.+++ .+..+..|..    .+.++++..                           .++++++++++++.|+.
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~d~~  191 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN---------------------------AYNQEERVVCAGYDNGD  191 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC---------------------------CCC-CCCEEEEEETTSE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe---------------------------ccCCCCCEEEEEccCCe
Confidence            888999888776 5666655544    555555421                           13467888888888899


Q ss_pred             EEEEeCCCCceeeeeccCCccEEEEEec-----CCEEEEEeCCCcEEEEECCCCceeEEec--CCCcccccEEEEEec--
Q psy18018        438 IRVWEAESGNLRHTLMGHQSLTSGMELR-----NNILVSGNADSTVKVWDIVSGQCLQTLS--GRNKHQSAVTCLQFN--  508 (635)
Q Consensus       438 i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~--  508 (635)
                      |++||+++++... ...|...+.++.++     ++++++++.||.|++||+++++....+.  ....|...|.+++|+  
T Consensus       192 i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  270 (357)
T 3i2n_A          192 IKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ  270 (357)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT
T ss_pred             EEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC
Confidence            9999998887644 45688899999985     4799999999999999998876655544  111288999999994  


Q ss_pred             CC-EEEEEeCCCcEEEEECCCCceeeeeccce--------ecCceeEEeccCceecccccCCCeEEE-EecCCCeEEEEe
Q psy18018        509 SR-FVITSSDDGTVKLWDVKTGEFSTPLMSSF--------ILNPFYFLIYSQPLLCPHLQFNSRFVI-TSSDDGTVKLWD  578 (635)
Q Consensus       509 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~v~iwd  578 (635)
                      ++ ++++++.||.|++||++++..........        .........|...|++++|+|++++|+ +++.|+.|++||
T Consensus       271 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence            55 89999999999999998765432111100        001123445788999999999999998 899999999999


Q ss_pred             CCCCce
Q psy18018        579 VKTGEF  584 (635)
Q Consensus       579 ~~~~~~  584 (635)
                      +.+.+.
T Consensus       351 ~~~~~~  356 (357)
T 3i2n_A          351 VTKLNK  356 (357)
T ss_dssp             ECC---
T ss_pred             CCCccc
Confidence            987764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.2e-33  Score=273.76  Aligned_cols=273  Identities=12%  Similarity=0.156  Sum_probs=213.6

Q ss_pred             CCCceEEEEe-cCcEEEEecCCCeEEEEEccCCce--EEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcc
Q psy18018        342 HVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL--RHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       342 ~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      ..+.+++|+| ++++||+|+.||.|++||+.+++.  ...+.+|...|.+++|+   +++|++++.||+|++||+.+...
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL  199 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence            3466788998 577899999999999999987654  44567899999999996   56999999999999999976543


Q ss_pred             eeE-----------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEE
Q psy18018        416 KLM-----------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVW  481 (635)
Q Consensus       416 ~~~-----------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iw  481 (635)
                      ...           ...+++++++|++|+.||.|++||++ ++.+..+.+|...|.++++++   .++++++.|+.|++|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iw  278 (435)
T 4e54_B          200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW  278 (435)
T ss_dssp             EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEE
T ss_pred             eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEE
Confidence            221           12478899999999999999999986 566778899999999999953   389999999999999


Q ss_pred             ECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018        482 DIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       482 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                      |+++.+....+.....|...|++++|  ++++|++++.||.|++||+.+++....+..+.....     ....+....|+
T Consensus       279 d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  353 (435)
T 4e54_B          279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF-----QHLTPIKAAWH  353 (435)
T ss_dssp             ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-----SSSCCCBCEEC
T ss_pred             ecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-----ccceeEEEEEc
Confidence            99987766655544558899999999  689999999999999999999887666544321110     01122334555


Q ss_pred             CCCeEEEEec------------CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEE-EeCCCCeEEEEccCCCeeEeEEE
Q psy18018        560 FNSRFVITSS------------DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRI-RASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       560 ~~~~~l~~~~------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l-~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      |++.+++++.            .++.|++||..+++.+..+.    .+|...|.++ +|+|||++|++|+ |+.  ++||
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~----~~~~~~v~s~~~fspdg~~lasg~-d~~--i~iW  426 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY----DPESSGISSLNEFNPMGDTLASAM-GYH--ILIW  426 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC----CSSCCCCCCEEEECTTSSCEEEEC-SSE--EEEC
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe----CCCCCcEEEEEEECCCCCEEEEEc-CCc--EEEE
Confidence            5555555543            34689999999999988874    4677888887 6999999999887 665  4444


Q ss_pred             E
Q psy18018        627 V  627 (635)
Q Consensus       627 ~  627 (635)
                      .
T Consensus       427 ~  427 (435)
T 4e54_B          427 S  427 (435)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-31  Score=251.02  Aligned_cols=220  Identities=19%  Similarity=0.375  Sum_probs=165.2

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcce----------eE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKK----------LM  418 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~  418 (635)
                      |+|+++++++|+.||.|++|++.+++.+..+.+|...+.++.+.+..+++++.++.+++|+.......          ..
T Consensus        75 ~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A           75 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  154 (318)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence            55566666666666666666666666666666777777666666777777777777777766554322          22


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCce----eeeeccCCccEEEEEec---CCE--EEEEeCCCcEEEEECCCCcee
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR---NNI--LVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~---~~~--l~s~~~dg~i~iwd~~~~~~~  489 (635)
                      ...+.++++++++++.|+.|++||+.+++.    ......+...|.++.+.   ++.  +++++.++.|++||.......
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            234667888999999999999999887653    34556678888888874   333  456778899999999988877


Q ss_pred             EEecCCCcccccEEEEEe--cCCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        490 QTLSGRNKHQSAVTCLQF--NSRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      ....    +...+..+.+  +++.+++++  .|+.|++||+++++.+..+..           |...|++++|+||+++|
T Consensus       235 ~~~~----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----------H~~~V~~l~~spdg~~l  299 (318)
T 4ggc_A          235 SAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSPDGATV  299 (318)
T ss_dssp             EEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSCE
T ss_pred             cccc----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCCCEE
Confidence            7665    5566777777  566666544  799999999999998887765           78899999999999999


Q ss_pred             EEecCCCeEEEEeCCCCc
Q psy18018        566 ITSSDDGTVKLWDVKTGE  583 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~  583 (635)
                      |+|+.||+|+|||+.+.+
T Consensus       300 ~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          300 ASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEETTTEEEEECCSCCC
T ss_pred             EEEecCCeEEEEECCCCC
Confidence            999999999999997653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-34  Score=274.56  Aligned_cols=313  Identities=11%  Similarity=0.107  Sum_probs=231.6

Q ss_pred             CcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEE
Q psy18018         80 DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLV  155 (635)
Q Consensus        80 ~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l  155 (635)
                      .++| .+++||  |+++||++.|++|+  |.+.+                     +   .+++|...|.+++|  +|   
T Consensus        15 ~~~v-~sv~~SpDG~~iASas~D~TV~--d~~~~---------------------~---~l~gh~~~v~~V~FsPdg---   64 (588)
T 2j04_A           15 EDWK-NNLTWARDGTLYLTTFPDISIG--QPKYA---------------------K---DINCNSKNLFHVKEFPLE---   64 (588)
T ss_dssp             SSSS-CCEEECTTSCEEEECSSSEEEE--EECCC---------------------S---CCSSBGGGTEEEEEECCC---
T ss_pred             hccE-EEEEECCCCCEEEEEcCCceee--ccccc---------------------c---eecCCCccEEEEEECCCC---
Confidence            4667 899999  99999999999999  64433                     2   23689999999999  55   


Q ss_pred             EEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCE
Q psy18018        156 VSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNI  235 (635)
Q Consensus       156 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  235 (635)
                          .++.+.+|+.+..+ ...+.+...+....+.+++.+|++++.||.|++||...  ++..+. |..++.        
T Consensus        65 ----~~~~~~~~~~~~~~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~--------  128 (588)
T 2j04_A           65 ----FENKLDFELAQQNG-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS--------  128 (588)
T ss_dssp             ----CCCTTTTSCCCSSC-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST--------
T ss_pred             ----CcceEEEEeCCCce-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc--------
Confidence                45555555544333 22333345566667777788999999999999999543  444444 443200        


Q ss_pred             EEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccce
Q psy18018        236 IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW  315 (635)
Q Consensus       236 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (635)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (588)
T 2j04_A          129 --------------------------------------------------------------------------------  128 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce-------EEee----eCCCc
Q psy18018        316 RFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL-------RHTL----MGHQS  384 (635)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~-------~~~~----~~~~~  384 (635)
                                               ......++|||||++|++|+.||.|++||+.++..       +..+    .+|..
T Consensus       129 -------------------------~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~  183 (588)
T 2j04_A          129 -------------------------SRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD  183 (588)
T ss_dssp             -------------------------TTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred             -------------------------cccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc
Confidence                                     01122455899999999999999999999988752       5665    56778


Q ss_pred             ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce---eeee-ccCCccEE
Q psy18018        385 LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL---RHTL-MGHQSLTS  460 (635)
Q Consensus       385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~v~  460 (635)
                      .|.+++|+                               |+|  +++++.|+.+++||+.+++.   .+++ .+|...|.
T Consensus       184 ~V~sVawS-------------------------------Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          184 WVTHIVWY-------------------------------EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             CEEEEEEE-------------------------------TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             cEEEEEEc-------------------------------CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence            99999987                               344  55556666667777666553   3456 47888999


Q ss_pred             EEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe----cCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018        461 GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       461 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  536 (635)
                      +++|.++.+++++ +++|++||+.+++......+   |...+..+++    ++..+++++.||+ ++|....        
T Consensus       231 svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~g---h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--------  297 (588)
T 2j04_A          231 DLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTG---SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--------  297 (588)
T ss_dssp             CEEEETTEEEEEC-SSEEEEEETTTTEEEEEECS---CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------
T ss_pred             EEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcC---CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------
Confidence            9999888999997 69999999998776444435   8888998888    4668999999999 9999761        


Q ss_pred             cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                                         ++++||+.++++.  |+++++|+...++ +..+     .+ ...|.+++|||||+.||+++
T Consensus       298 -------------------~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~-----~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          298 -------------------LHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY-----ET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             -------------------EEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS-----CC-EEEEEEEEECTTSSEEEEEE
T ss_pred             -------------------EEECCCceEEEEc--CCEEEEEECCCCc-eeee-----cc-ceEEEEEEECCCCCEEEEEE
Confidence                               3478899888875  9999999986554 3333     23 67899999999999999886


Q ss_pred             C
Q psy18018        617 R  617 (635)
Q Consensus       617 ~  617 (635)
                      .
T Consensus       350 ~  350 (588)
T 2j04_A          350 D  350 (588)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.5e-32  Score=252.55  Aligned_cols=246  Identities=19%  Similarity=0.243  Sum_probs=187.1

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccC--CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAES--GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ......++|+|+|++|++|+.|+.|++|++..  .+.+..+.+|...|.+++|++.                        
T Consensus         9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~------------------------   64 (297)
T 2pm7_B            9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------------   64 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG------------------------
T ss_pred             cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC------------------------
Confidence            34456688999999999999999999999974  3677889999999999998520                        


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCc--eeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCce--eE
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQC--LQ  490 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~  490 (635)
                           .++++|++++.|++|++||+++++  .+..+.+|...|.+++++    +.+|++++.|+.|++||++++..  ..
T Consensus        65 -----~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           65 -----KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             -----GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             -----CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence                 123345555555555555555442  445677899999999985    56999999999999999987632  33


Q ss_pred             EecCCCcccccEEEEEec---------------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceec
Q psy18018        491 TLSGRNKHQSAVTCLQFN---------------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC  555 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  555 (635)
                      .+..   |...|.+++|+               +++|++|+.|++|++||+++++......       .....|...|.+
T Consensus       140 ~~~~---h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-------~~l~~H~~~V~~  209 (297)
T 2pm7_B          140 IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-------STLEGHSDWVRD  209 (297)
T ss_dssp             EEEC---CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-------EEECCCSSCEEE
T ss_pred             eeec---ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-------EEecCCCCceEE
Confidence            4444   88899999994               3589999999999999998765221111       012247889999


Q ss_pred             ccccCCC---eEEEEecCCCeEEEEeCCCCce--EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        556 PHLQFNS---RFVITSSDDGTVKLWDVKTGEF--IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       556 ~~~s~~~---~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ++|+|++   ++||+++.|++|+|||+.+++.  ....  +....+...|++++|+|+|++||+++.||.  ++||..+
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~las~~~D~~--v~lw~~~  284 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL--LKEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLWKEN  284 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE--SSSSCCSSCEEEEEECSSSCCEEEEETTSC--EEEEEEC
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee--eecccCCCcEEEEEECCCCCEEEEEcCCCc--EEEEEEC
Confidence            9999994   8999999999999999987531  1111  111357789999999999999999999998  6666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=263.74  Aligned_cols=246  Identities=15%  Similarity=0.203  Sum_probs=195.7

Q ss_pred             CCceEEEEec---CcEEEEecCCCeEEEEEccCCc-eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        343 VPDLFGFQFD---GVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       343 ~~~~~~~s~~---~~~l~~~~~dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ....++|+|+   +.++++|+.||.|++||+.+++ .+..+.+|...|.++.+.+..                       
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------  123 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-----------------------  123 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-----------------------
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-----------------------
Confidence            3455678887   6999999999999999999888 888899999999999764210                       


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCc-eeeeeccCCc----cEEEEE------ecCCEEEEEeCCCcEEEEECCCCc
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQS----LTSGME------LRNNILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~----~v~~~~------~~~~~l~s~~~dg~i~iwd~~~~~  487 (635)
                        .+++++++|++++.|+.|++||+.+++ ....+..|..    .+.++.      .+++++++++.||.|++||+++++
T Consensus       124 --~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (357)
T 3i2n_A          124 --GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA  201 (357)
T ss_dssp             --GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred             --ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence              124677778888888888888888776 6677766554    788777      367899999999999999999988


Q ss_pred             eeEEecCCCcccccEEEEEec-----CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018        488 CLQTLSGRNKHQSAVTCLQFN-----SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS  562 (635)
Q Consensus       488 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  562 (635)
                      ......    |...|.+++|+     ++++++++.||.|++||+++++....+..      .....|...|++++|+|++
T Consensus       202 ~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~  271 (357)
T 3i2n_A          202 LRWETN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS------VSEKAHKSTVWQVRHLPQN  271 (357)
T ss_dssp             EEEEEE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE------EEEECCSSCEEEEEEETTE
T ss_pred             eeeecC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee------eccCCCcCCEEEEEECCCC
Confidence            765543    77889999994     68999999999999999987664443321      1223578899999999999


Q ss_pred             e-EEEEecCCCeEEEEeCCCCc-------------------eEEeeeeccCCCCCceEEEEEeCCCCeEEE-EccCCCee
Q psy18018        563 R-FVITSSDDGTVKLWDVKTGE-------------------FIRNLVSLDSGGSGGVVWRIRASETKLVCA-VGSRNGTE  621 (635)
Q Consensus       563 ~-~l~~~~~d~~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~-~~~~dg~~  621 (635)
                      + +|++++.||.|++||+.++.                   .+..+     .+|..+|++++|+|++++|+ +++.||. 
T Consensus       272 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~s~~~d~~-  345 (357)
T 3i2n_A          272 RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-----TLSTQPISSLDWSPDKRGLCVCSSFDQT-  345 (357)
T ss_dssp             EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-----ECCSSCEEEEEECSSSTTEEEEEETTSE-
T ss_pred             CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-----ccCCCCeeEEEEcCCCCeEEEEecCCCc-
Confidence            9 89999999999999998653                   34444     46889999999999999998 7999998 


Q ss_pred             EeEEEEEeeec
Q psy18018        622 ETKLLVLDFDV  632 (635)
Q Consensus       622 ~~~l~~~d~~~  632 (635)
                         +.+||++.
T Consensus       346 ---i~iw~~~~  353 (357)
T 3i2n_A          346 ---VRVLIVTK  353 (357)
T ss_dssp             ---EEEEEECC
T ss_pred             ---EEEEECCC
Confidence               55555543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-31  Score=260.85  Aligned_cols=271  Identities=18%  Similarity=0.167  Sum_probs=224.8

Q ss_pred             ccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc
Q psy18018        340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       340 ~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      +......++|+|++++|++++.++.|++||+.+++  .+..+.+|...|.+++|+  +++|++++.|+.|++||+.+++.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            34567788999999999999999999999999887  888999999999999998  67999999999999999987753


Q ss_pred             eeE-----------EEEEeeCCcEEEEEeCCCcEEEEeCCCCce----eeeeccCCccEEEEEec--CCEEEEEeCCCcE
Q psy18018        416 KLM-----------FRICLFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR--NNILVSGNADSTV  478 (635)
Q Consensus       416 ~~~-----------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  478 (635)
                      ...           ...++|+++++++++.|+.+++||+..++.    .....+|...+.++.++  ++++++++.||.|
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  166 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  166 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence            322           234788999999999999999999988763    33346789999999984  5699999999999


Q ss_pred             EEEEC------------------CCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018        479 KVWDI------------------VSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       479 ~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      ++||+                  ..++.+..+..   |...|.+++|  ++++|++++.|+.|++||+++++.+..+.. 
T Consensus       167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-  242 (372)
T 1k8k_C          167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-  242 (372)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-
T ss_pred             EEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-
Confidence            99995                  36677777776   8889999999  688999999999999999999987766654 


Q ss_pred             eecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC--CceEE--eee-------------------------
Q psy18018        539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT--GEFIR--NLV-------------------------  589 (635)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~--~~~~~--~~~-------------------------  589 (635)
                                |..+|.+++|+|++++|+++ .|+.|++||+.+  ++...  .+.                         
T Consensus       243 ----------~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
T 1k8k_C          243 ----------ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS  311 (372)
T ss_dssp             ----------SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred             ----------CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence                      57789999999999999988 899999999988  53110  000                         


Q ss_pred             -------eccCCCCCceEEEEEeC-CCC---eEEEEccCCCeeEeEEEE
Q psy18018        590 -------SLDSGGSGGVVWRIRAS-ETK---LVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       590 -------~~~~~~~~~~i~~l~~s-~d~---~~l~~~~~dg~~~~~l~~  627 (635)
                             .....+|..+|++++|. ++|   .+|++++.||.  +++|.
T Consensus       312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~--i~~W~  358 (372)
T 1k8k_C          312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--MSIWD  358 (372)
T ss_dssp             -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--EEEEE
T ss_pred             ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc--eEEEE
Confidence                   01113789999999965 777   99999999998  44443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.3e-33  Score=270.25  Aligned_cols=331  Identities=14%  Similarity=0.096  Sum_probs=207.6

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC--CCCceeeccCcceEEEEEEc--CCEE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI--KDPKVLKGHDDHVITCLQFS--GSRI   94 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~--~~~~~l~~h~~~vi~~~~~s--~~~l   94 (635)
                      ..++.|.++| +|++|+    |+|++||+++.++.+        .+||..++  +.+..+.+|.+.+ .+++|+  +++|
T Consensus         5 ~~~~~~~~~v-~~~~~s----~~g~~l~~~~~d~~i--------~iw~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l   70 (377)
T 3dwl_C            5 QVLHILPKPS-YEHAFN----SQRTEFVTTTATNQV--------ELYEQDGNGWKHARTFSDHDKIV-TCVDWAPKSNRI   70 (377)
T ss_dssp             EEEEECSSCC-SCCEEC----SSSSEEECCCSSSCB--------CEEEEETTEEEECCCBCCCSSCE-EEEEECTTTCCE
T ss_pred             eeEecCCCcE-EEEEEC----CCCCEEEEecCCCEE--------EEEEccCCceEEEEEEecCCceE-EEEEEeCCCCEE
Confidence            4456677888 999999    999999999865444        46999988  7889999999988 999999  8999


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      ++++.|++|++||+.+++                  ..++...+.+|...|.+++|  ++++|++++.|+.|++||+.++
T Consensus        71 ~s~s~d~~v~vwd~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           71 VTCSQDRNAYVYEKRPDG------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             EEEETTSSEEEC------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             EEEeCCCeEEEEEcCCCC------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence            999999999999987543                  12356677899999999999  8999999999999999999988


Q ss_pred             cc---eeeccc-cc-eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEE
Q psy18018        173 EC---LHAELQ-ET-EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKG  247 (635)
Q Consensus       173 ~~---~~~~~~-~~-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~  247 (635)
                      +.   ...+.. +. .+......+++.+|++++.|+.|++||+...+........                        .
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------~  188 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS------------------------V  188 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC------------------------S
T ss_pred             ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc------------------------c
Confidence            73   445544 33 3444445556678888999999999988643311100000                        0


Q ss_pred             ecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhh
Q psy18018        248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE  327 (635)
Q Consensus       248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (635)
                      |......                                                                         
T Consensus       189 ~~~~~~~-------------------------------------------------------------------------  195 (377)
T 3dwl_C          189 WGSRLPF-------------------------------------------------------------------------  195 (377)
T ss_dssp             SCSCCCE-------------------------------------------------------------------------
T ss_pred             cccccch-------------------------------------------------------------------------
Confidence            0000000                                                                         


Q ss_pred             hhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce----EEeeeCCCcceeEEEEe--CCEEEEEeC
Q psy18018        328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR--NNILVSGNA  401 (635)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~v~~l~~~--~~~l~s~~~  401 (635)
                          ........+......++|+|++++|++++.||.|++||+.+++.    +..+.+|...|.+++|+  +.+|++++.
T Consensus       196 ----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          196 ----NTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             ----EEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred             ----hhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence                00000001112234456888899999999999999999998877    78889999999999997  456766665


Q ss_pred             CCcEEEEEccCCcceeEEEEEeeCCc---------------EEEE--EeCCCcEEEEeCCC--CceeeeeccCCccEEEE
Q psy18018        402 DSTVKVWDIVSGTKKLMFRICLFDGV---------------HVVS--GSLDTSIRVWEAES--GNLRHTLMGHQSLTSGM  462 (635)
Q Consensus       402 dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~l~~--~~~d~~i~~~d~~~--~~~~~~~~~~~~~v~~~  462 (635)
                      ++ +.+|+............-.+...               .-+.  .......+..+...  .........|...|+++
T Consensus       272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~  350 (377)
T 3dwl_C          272 YS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATL  350 (377)
T ss_dssp             SS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEE
T ss_pred             Cc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEE
Confidence            55 55776653221100000000000               0000  00001111111110  01222334699999999


Q ss_pred             Eec---CC---EEEEEeCCCcEEEEEC
Q psy18018        463 ELR---NN---ILVSGNADSTVKVWDI  483 (635)
Q Consensus       463 ~~~---~~---~l~s~~~dg~i~iwd~  483 (635)
                      .+.   +.   .+++++.||.|++||+
T Consensus       351 ~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          351 RPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             eccCCCCCceEEEEeecCCCcEEEecC
Confidence            863   23   6999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-31  Score=250.17  Aligned_cols=198  Identities=21%  Similarity=0.261  Sum_probs=142.8

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCC--CCCCceeeccCcceEEEEEEc----CC
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP--IKDPKVLKGHDDHVITCLQFS----GS   92 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~--~~~~~~l~~h~~~vi~~~~~s----~~   92 (635)
                      ..+.||.+.| ++++|+    |+|++||+++.++.+        .+||...  .+++.+|.+|.+.| .+++|+    ++
T Consensus         3 ~~~~~h~~~V-~~~~~s----~~g~~las~s~D~~v--------~iw~~~~~~~~~~~~l~gH~~~V-~~v~~s~~~~g~   68 (297)
T 2pm7_B            3 VIANAHNEMI-HDAVMD----YYGKRMATCSSDKTI--------KIFEVEGETHKLIDTLTGHEGPV-WRVDWAHPKFGT   68 (297)
T ss_dssp             EECCSCSSCE-EEEEEC----TTSSEEEEEETTSCE--------EEEEBCSSCBCCCEEECCCSSCE-EEEEECCGGGCS
T ss_pred             eeccCCcCce-EEEEEC----CCCCEEEEEeCCCEE--------EEEecCCCCcEEEEEEccccCCe-EEEEecCCCcCC
Confidence            4578999999 999999    999999999875544        4699874  47788999999988 999996    68


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c--CCEEEEEeCCCeEEEEe
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D--GKLVVSGAYDYMVKIWN  168 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~--~~~l~s~~~dg~v~iwd  168 (635)
                      +||||+.|++|++||+.+++                   .+.+..+.+|...|.+++|  +  +.+|++++.|++|++||
T Consensus        69 ~l~s~s~D~~v~iWd~~~~~-------------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd  129 (297)
T 2pm7_B           69 ILASCSYDGKVMIWKEENGR-------------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE  129 (297)
T ss_dssp             EEEEEETTTEEEEEEBSSSC-------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEEcCCCc-------------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence            99999999999999987542                   1345567789999999999  4  78999999999999999


Q ss_pred             CCCccc--eeeccccceeEEeeeccC--------------CCEEEEEeCCCcEEEEECCCCe----EEEEEeCCCCCeEE
Q psy18018        169 PDTEEC--LHAELQETEVELSHGYAL--------------RSRIVSGSDDNTLKVWSATTGK----CLRTLIGHTGGVWS  228 (635)
Q Consensus       169 ~~~~~~--~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~  228 (635)
                      +.++..  ...+..+........+.+              +.+|++++.|+.|++||+.+++    ....+.+|...|.+
T Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence            987642  223333333333333333              2467777777777777766544    44566667776666


Q ss_pred             EEeeC-----CEEEEeeCceeEEEec
Q psy18018        229 SQMAG-----NIIISGSTDRTLKGWS  249 (635)
Q Consensus       229 ~~~~~-----~~l~s~~~dg~i~~w~  249 (635)
                      ++|++     .+|++++.|++|++||
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEE
Confidence            66532     2344444444444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.7e-31  Score=256.40  Aligned_cols=294  Identities=17%  Similarity=0.187  Sum_probs=216.6

Q ss_pred             ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCc----------eeeccCcceEEEEEEcCCEE
Q psy18018         25 DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPK----------VLKGHDDHVITCLQFSGSRI   94 (635)
Q Consensus        25 ~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~----------~l~~h~~~vi~~~~~s~~~l   94 (635)
                      ..+| .|++|+    |||++|++|+.+..- .+-++.+.+|++.......          .|.+|.+.+ +|++++++.+
T Consensus        14 g~PV-~sv~fs----~dg~~l~sGGg~~~~-sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v-~s~~~~~~~~   86 (365)
T 4h5i_A           14 GYPA-YGAKFL----NNDTLLVAGGGGEGN-NGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP-TAIDASKGII   86 (365)
T ss_dssp             SSCE-EEEEEE----ETTEEEEEEECCSSS-SSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC-CEEEEETTEE
T ss_pred             CCCE-EEEEEe----CCCcEEEEECCCccc-cCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce-EEEEeCCCEE
Confidence            3567 999999    999999998754321 1234557789987665432          366888888 8999999999


Q ss_pred             EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeE----EEEe-----eCCCcceEEEEe--cCCEEEEE--eCC
Q psy18018         95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGEC----LHVL-----VGHLAAVRCVQY--DGKLVVSG--AYD  161 (635)
Q Consensus        95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~----~~~l-----~~h~~~v~~l~~--~~~~l~s~--~~d  161 (635)
                      ++|..++..++|+          ++.|+.+++|++.+.+.    ....     ..+...+.+++|  ||++|+++  +.|
T Consensus        87 ~~g~~~~~~~l~s----------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d  156 (365)
T 4h5i_A           87 LVGCNENSTKITQ----------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP  156 (365)
T ss_dssp             EEECCCCHHHHHH----------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred             EEEECCCccEEEE----------ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence            9988777666654          34567788887765421    1111     234556889999  89987654  478


Q ss_pred             CeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEE--EeCCCCCeEEEEeeCCEEEEe
Q psy18018        162 YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT--LIGHTGGVWSSQMAGNIIISG  239 (635)
Q Consensus       162 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~  239 (635)
                      ++|++||+.+++.+..+.++..+....+.+++.++++++ ++.+.+|+..+++.+..  ..+|...|.+++         
T Consensus       157 ~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~---------  226 (365)
T 4h5i_A          157 AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKIN---------  226 (365)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEE---------
T ss_pred             CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEE---------
Confidence            999999999999988887666666666666677777776 45677777777766543  234555555444         


Q ss_pred             eCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEee
Q psy18018        240 STDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA  319 (635)
Q Consensus       240 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (635)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (365)
T 4h5i_A          227 --------------------------------------------------------------------------------  226 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC----eEEEEEccCCce----EEeeeCCCcceeEEEE
Q psy18018        320 EDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT----SIRVWEAESGNL----RHTLMGHQSLTSGMEL  391 (635)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----~i~v~~~~~~~~----~~~~~~~~~~v~~l~~  391 (635)
                                                   |+|++.++++++.++    .++.|+......    ...+.+|...|.+++|
T Consensus       227 -----------------------------fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~  277 (365)
T 4h5i_A          227 -----------------------------FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV  277 (365)
T ss_dssp             -----------------------------EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred             -----------------------------EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence                                         667777777766655    567777665432    3456778888888887


Q ss_pred             eCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccEEEEEec--CCE
Q psy18018        392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NNI  468 (635)
Q Consensus       392 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~--~~~  468 (635)
                      +                               |+|++|++|+.|++|++||+++++++..+ .+|...|++++|+  +++
T Consensus       278 S-------------------------------pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~  326 (365)
T 4h5i_A          278 D-------------------------------MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY  326 (365)
T ss_dssp             C-------------------------------TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred             C-------------------------------CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence            5                               77888999999999999999999988875 7899999999984  679


Q ss_pred             EEEEeCCCcEEEEECCC
Q psy18018        469 LVSGNADSTVKVWDIVS  485 (635)
Q Consensus       469 l~s~~~dg~i~iwd~~~  485 (635)
                      |++++.|++|+|||+..
T Consensus       327 laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          327 VASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEETTSEEEEEECCT
T ss_pred             EEEEeCCCeEEEEEcCC
Confidence            99999999999999964

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.6e-31  Score=254.74  Aligned_cols=234  Identities=14%  Similarity=0.116  Sum_probs=173.3

Q ss_pred             EEecCc-EEEEecCCCeEEEEEc-cCCceEEeeeC--CCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        349 FQFDGV-HVVSGSLDTSIRVWEA-ESGNLRHTLMG--HQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       349 ~s~~~~-~l~~~~~dg~i~v~~~-~~~~~~~~~~~--~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      |+|+++ +|++|+.||.|++|++ .+++. ..+.+  |...|.+++|+ ++.+++++.|+.|++||+.+......     
T Consensus        64 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----  137 (342)
T 1yfq_A           64 FIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI-----  137 (342)
T ss_dssp             EEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE-----
T ss_pred             ECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccc-----
Confidence            666777 7777777777777777 65544 56677  99999999987 45566665555555555442100000     


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCC-Ccee--EEecCCCcccc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS-GQCL--QTLSGRNKHQS  500 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~~  500 (635)
                                     .    ..++.+..+. |...+.++.++++.+++++.|+.|++||+.+ +...  .....   +..
T Consensus       138 ---------------~----~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~  194 (342)
T 1yfq_A          138 ---------------A----VKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG---LKY  194 (342)
T ss_dssp             ---------------E----EEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS---CSS
T ss_pred             ---------------c----ccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecC---CCC
Confidence                           0    0044444555 8889999999988899999999999999987 5432  22222   677


Q ss_pred             cEEEEEe---cCCEEEEEeCCCcEEEEECCCC------ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        501 AVTCLQF---NSRFVITSSDDGTVKLWDVKTG------EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       501 ~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      .+.++++   +++++++++.||.|++|+++..      +....+..+....  ....|...|.+++|+|++++|++++.|
T Consensus       195 ~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d  272 (342)
T 1yfq_A          195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL--KDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT--TCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc--cccccceeEEEEEEcCCCCEEEEecCC
Confidence            8999988   4689999999999999999876      4444443321100  011234489999999999999999999


Q ss_pred             CeEEEEeCCCCceEEeeeeccCCCC-CceEEEEEeCCCCeEEEEccCCCe
Q psy18018        572 GTVKLWDVKTGEFIRNLVSLDSGGS-GGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       572 ~~v~iwd~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      |.|++||+.+++.+..+     .+| ..+|.+++  |++++|++++.||.
T Consensus       273 g~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          273 GIISCWNLQTRKKIKNF-----AKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             SCEEEEETTTTEEEEEC-----CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ceEEEEcCccHhHhhhh-----hcccCCCceEec--CCCCeEEEEecCCc
Confidence            99999999999999888     466 89999999  99999999999997

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.7e-31  Score=255.90  Aligned_cols=236  Identities=14%  Similarity=0.125  Sum_probs=174.5

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      |+|++++|++++.||.|++||+.+++.+. +..|...|.+++|..                             ++++.+
T Consensus        94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~-----------------------------~~~~~~  143 (368)
T 3mmy_A           94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIK-----------------------------APNYSC  143 (368)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEE-----------------------------CSSCEE
T ss_pred             ECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEe-----------------------------CCCCCE
Confidence            55566666677777777777776665544 456888888888731                             255667


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEE-ecCCCcccccEEEEEe
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQT-LSGRNKHQSAVTCLQF  507 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~  507 (635)
                      +++++.|+.|++||+++++.+..+..+. .+.++.+.+..+++++.++.+++|++........ +.....+...+.++.+
T Consensus       144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T 3mmy_A          144 VMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK  222 (368)
T ss_dssp             EEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE
T ss_pred             EEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc
Confidence            7888888888888888888888887664 6778888888999999999999999987654333 2222224444444444


Q ss_pred             cCCE----EEEEeCCCcEEEEECCCCc---eeeeeccceec-CceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        508 NSRF----VITSSDDGTVKLWDVKTGE---FSTPLMSSFIL-NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       508 ~~~~----l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      +...    +++++.||.|++|+++...   ....+..+... .......|...|++++|+|++++|++++.||.|++||+
T Consensus       223 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          223 DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence            4443    9999999999999999873   33333332110 01111223447999999999999999999999999999


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      .+++.+..+     ..|..+|.+++|+|||++|++++.|+.
T Consensus       303 ~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          303 DARTKLKTS-----EQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             TTTEEEEEC-----CCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             CCCcEEEEe-----cCCCCCceEEEECCCCCeEEEEecccc
Confidence            999999888     578899999999999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-30  Score=256.80  Aligned_cols=261  Identities=21%  Similarity=0.336  Sum_probs=217.9

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee--CCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      ...++|+++ +.|++|. |+.|++||..+++....+.  +|...|++++|+  +++|++|+.||.|++||+.+++.....
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            456788865 5677765 8999999999999877665  677789999997  679999999999999999988765443


Q ss_pred             E-------EEeeCCcEEEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce-
Q psy18018        420 R-------ICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC-  488 (635)
Q Consensus       420 ~-------~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-  488 (635)
                      .       .+++++..+++|+.|+.+++||.... ..+..+.+|...+..+.+  +++++++++.|+.+++|+..+++. 
T Consensus       186 ~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~  265 (420)
T 4gga_A          186 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  265 (420)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred             eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence            2       46778999999999999999998864 556788999999998887  467999999999999999987653 


Q ss_pred             ---eEEecCCCcccccEEEEEe---cCCEEEEE--eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC
Q psy18018        489 ---LQTLSGRNKHQSAVTCLQF---NSRFVITS--SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       489 ---~~~~~~~~~~~~~v~~~~~---~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                         +.....   |...|.+++|   ++.+++++  +.|++|++||+.+++....+..            ...+.++.|+|
T Consensus       266 ~~~~~~~~~---~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~------------~~~v~~~~~~~  330 (420)
T 4gga_A          266 WVPLQTFTQ---HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------------HSQVCSILWSP  330 (420)
T ss_dssp             SCCSEEECC---CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC------------SSCEEEEEEET
T ss_pred             ceeeeeecc---cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc------------ccceeeeeecC
Confidence               333443   8889999999   35666654  5799999999999987765543            56788999999


Q ss_pred             CCeEEEEec--CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        561 NSRFVITSS--DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       561 ~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      +++.+++++  .|+.|+|||+.+++++..+     .+|.+.|++|+|+|||++|++|+.|++  ++||.+
T Consensus       331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-----~gH~~~V~~l~~spdg~~l~S~s~D~t--vriWdv  393 (420)
T 4gga_A          331 HYKELISGHGFAQNQLVIWKYPTMAKVAEL-----KGHTSRVLSLTMSPDGATVASAAADET--LRLWRC  393 (420)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTTE--EEEECC
T ss_pred             CCCeEEEEEecCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCe--EEEEEC
Confidence            999888764  7899999999999999998     689999999999999999999999998  566643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=4.3e-30  Score=281.53  Aligned_cols=476  Identities=12%  Similarity=0.079  Sum_probs=323.7

Q ss_pred             eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcce---
Q psy18018          7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV---   83 (635)
Q Consensus         7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~v---   83 (635)
                      ++.|+... .+.+.|.+|...+ .+++||    |||++||.++....  -..+..+.+||..+++ .+.|.+|...+   
T Consensus        35 l~~~~~~g-g~~~~lt~~~~~v-~~~~~S----PDG~~la~~s~~~~--~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~  105 (1045)
T 1k32_A           35 LWEHDLKS-GSTRKIVSNLGVI-NNARFF----PDGRKIAIRVMRGS--SLNTADLYFYNGENGE-IKRITYFSGKSTGR  105 (1045)
T ss_dssp             EEEEETTT-CCEEEEECSSSEE-EEEEEC----TTSSEEEEEEEEST--TCCEEEEEEEETTTTE-EEECCCCCEEEETT
T ss_pred             EEEEECCC-CcEEEeeeCCCcc-cCeEEC----CCCCEEEEEEeecc--CCCCCeEEEEECCCCC-eEEcccCCCccccc
Confidence            46677554 3467889999998 999999    99999998764310  0124567789998876 57788887754   


Q ss_pred             ---EEEEEEc--CCEEEEeeCC------CcEEEEECCCCcEE----------------EEEeeC------------CCcE
Q psy18018         84 ---ITCLQFS--GSRIVSGSDD------NTLKVWSATTGKCL----------------LVSGSR------------DATL  124 (635)
Q Consensus        84 ---i~~~~~s--~~~l~s~~~d------~~v~vWd~~~~~~l----------------l~~~~~------------dg~i  124 (635)
                         +.+++||  |+++++++.+      ..|.+|++.+++..                +++++.            +...
T Consensus       106 ~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~  185 (1045)
T 1k32_A          106 RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRG  185 (1045)
T ss_dssp             EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred             ccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcC
Confidence               3789999  8877777754      45888888776543                223221            2345


Q ss_pred             EEEeCCCCeEEEEeeCCCcceEEEEecC-CEEEEEeCCCeEEEEeCCC-ccceeeccccceeEEeeeccCCCEEEEEeCC
Q psy18018        125 RVWHIESGECLHVLVGHLAAVRCVQYDG-KLVVSGAYDYMVKIWNPDT-EECLHAELQETEVELSHGYALRSRIVSGSDD  202 (635)
Q Consensus       125 ~vwd~~~~~~~~~l~~h~~~v~~l~~~~-~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  202 (635)
                      .+|....+.....+.+|...+.++.|.+ ..+++++.|+++++|.+.. +.....+..+.........+++..++.+ .+
T Consensus       186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~  264 (1045)
T 1k32_A          186 KIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KG  264 (1045)
T ss_dssp             EEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ET
T ss_pred             CEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eC
Confidence            5664333344556689999999999943 4556777889999998653 3333333333333333445666777776 58


Q ss_pred             CcEEEEECCCCeEEEEEeC-----------CCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccc
Q psy18018        203 NTLKVWSATTGKCLRTLIG-----------HTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ  268 (635)
Q Consensus       203 g~i~vwd~~~~~~~~~~~~-----------h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  268 (635)
                      +.|++||+...+ +..+.+           |...+.+++|+   ++.+++++ ++.+.+|+.........          
T Consensus       265 ~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~----------  332 (1045)
T 1k32_A          265 GSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV----------  332 (1045)
T ss_dssp             TEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC----------
T ss_pred             CEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc----------
Confidence            999999995443 445554           23457777765   56777777 78899998765321100          


Q ss_pred             eeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccC-CCceE
Q psy18018        269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH-VPDLF  347 (635)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  347 (635)
                                                                                           ..... ....+
T Consensus       333 ---------------------------------------------------------------------~~~~~~~~~~~  343 (1045)
T 1k32_A          333 ---------------------------------------------------------------------PEPLRIRYVRR  343 (1045)
T ss_dssp             ---------------------------------------------------------------------SCCSCEEEEEE
T ss_pred             ---------------------------------------------------------------------cCCCcceEEee
Confidence                                                                                 00000 12234


Q ss_pred             EEEecCcEEEEecCCCeEE-EEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        348 GFQFDGVHVVSGSLDTSIR-VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~-v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      +|+ +|+.++.++.++.+. +|+..+++... +.+|...+..++|                               +|||
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~-------------------------------SpDG  390 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGV-------------------------------DRNG  390 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEE-------------------------------CTTS
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEE-------------------------------CCCC
Confidence            577 888898888888888 89988766543 3366666666655                               4788


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCC----------cEEEEECCCCceeEEecC
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADS----------TVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~  494 (635)
                      ++|++++.++.+++||+.+++....+.+|...+.+++|  ++++|++++.++          .|++||+.+++ ...+..
T Consensus       391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~  469 (1045)
T 1k32_A          391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT  469 (1045)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC
T ss_pred             CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC
Confidence            88888888889999999998888877788887777776  567888877654          89999999877 555554


Q ss_pred             CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee-------e--c----------------------ccee-
Q psy18018        495 RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP-------L--M----------------------SSFI-  540 (635)
Q Consensus       495 ~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~-------~--~----------------------~~~~-  540 (635)
                         +...+..++|  ||++|++++.++...+|+.........       +  .                      .... 
T Consensus       470 ---~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~  546 (1045)
T 1k32_A          470 ---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY  546 (1045)
T ss_dssp             ---SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             ---CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHh
Confidence               6666777888  799999999988888888654432100       0  0                      0000 


Q ss_pred             cCceeEEeccCceecccccCCCeEEEE-------------ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVIT-------------SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-------------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      ........+...+..++++||++++++             ......|.+||+.+++. ..+.        ..+.+++|||
T Consensus       547 ~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~v~~~~~S~  617 (1045)
T 1k32_A          547 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK--------NNLTDLRLSA  617 (1045)
T ss_dssp             GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE--------EEEEEEEECT
T ss_pred             HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE-EEee--------cCcceEEECC
Confidence            001111224567889999999998885             12345789999998875 3331        5688999999


Q ss_pred             CCeEEEEccCCC
Q psy18018        608 TKLVCAVGSRNG  619 (635)
Q Consensus       608 d~~~l~~~~~dg  619 (635)
                      ||++|++++.++
T Consensus       618 DG~~l~~~~~~~  629 (1045)
T 1k32_A          618 DRKTVMVRKDDG  629 (1045)
T ss_dssp             TSCEEEEEETTS
T ss_pred             CCCEEEEEcCCc
Confidence            999999998874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-30  Score=246.03  Aligned_cols=263  Identities=20%  Similarity=0.303  Sum_probs=214.7

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee--CCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      ..+++||+++ .|++| .|+.|++||+.+++++..+.  +|...|.+++|+  ++++++|+.||.|++|++.+++.....
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            3568899876 66666 48999999999999887765  577789999997  679999999999999999988765544


Q ss_pred             E-------EEeeCCcEEEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        420 R-------ICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       420 ~-------~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                      .       .+++++..+++++.++.+++|+.... ..+..+.+|...+..+.+  +++++++++.|+.|++||+.+++..
T Consensus       106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            3       36778899999999999999999875 456778899999998887  4679999999999999999876533


Q ss_pred             EEe-cCCCcccccEEEEEe---cCCEE--EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        490 QTL-SGRNKHQSAVTCLQF---NSRFV--ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       490 ~~~-~~~~~~~~~v~~~~~---~~~~l--~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      ... .....+...|.++++   ++..+  ++++.++.|++||.+........            .+...+..++|+|+++
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~------------~~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV------------DAHSQVCSILWSPHYK  253 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE------------ECSSCEEEEEEETTTT
T ss_pred             ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc------------cceeeeeeeeeccccc
Confidence            211 112226778888888   24443  56778899999999887755433            2567889999999999


Q ss_pred             EEEEec--CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        564 FVITSS--DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       564 ~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      .+++++  .|+.|+|||+.+++++..+     .+|.+.|++|+|+|||++|++|+.||+  ++||.
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l-----~gH~~~V~~l~~spdg~~l~S~s~D~~--v~iWd  312 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTMAKVAEL-----KGHTSRVLSLTMSPDGATVASAAADET--LRLWR  312 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTTE--EEEEC
T ss_pred             ceEEEEEcCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCe--EEEEE
Confidence            887654  7999999999999999998     689999999999999999999999998  55554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.3e-32  Score=254.02  Aligned_cols=198  Identities=23%  Similarity=0.250  Sum_probs=133.4

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc----CC
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS----GS   92 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s----~~   92 (635)
                      ..+.||.+.| ++++|+    |+|++||+++.++.        +.+||..+++  ++..+.+|.+.| .+++|+    ++
T Consensus         7 ~~~~~H~~~V-~~v~~s----~~g~~lasgs~D~~--------v~lwd~~~~~~~~~~~l~gH~~~V-~~v~~~~~~~~~   72 (316)
T 3bg1_A            7 TVDTSHEDMI-HDAQMD----YYGTRLATCSSDRS--------VKIFDVRNGGQILIADLRGHEGPV-WQVAWAHPMYGN   72 (316)
T ss_dssp             -------CCE-EEEEEC----GGGCEEEEEETTTE--------EEEEEEETTEEEEEEEEECCSSCE-EEEEECCGGGSS
T ss_pred             eecccccCeE-EEeeEc----CCCCEEEEEeCCCe--------EEEEEecCCCcEEEEEEcCCCccE-EEEEeCCCCCCC
Confidence            5678999999 999999    99999999987544        4469998764  467899999988 999996    78


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c--CCEEEEEeCCCeEEEEe
Q psy18018         93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D--GKLVVSGAYDYMVKIWN  168 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~--~~~l~s~~~dg~v~iwd  168 (635)
                      +||||+.|++|++||+++++                   .+....+.+|...|.+++|  +  +.+|++++.|++|++||
T Consensus        73 ~l~s~s~D~~v~iWd~~~~~-------------------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd  133 (316)
T 3bg1_A           73 ILASCSYDRKVIIWREENGT-------------------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT  133 (316)
T ss_dssp             CEEEEETTSCEEEECCSSSC-------------------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred             EEEEEECCCEEEEEECCCCc-------------------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence            99999999999999987542                   2355677899999999999  4  77999999999999999


Q ss_pred             CCCccc---eeeccccceeEEeeeccC------------------CCEEEEEeCCCcEEEEECCCC---eEEEEEeCCCC
Q psy18018        169 PDTEEC---LHAELQETEVELSHGYAL------------------RSRIVSGSDDNTLKVWSATTG---KCLRTLIGHTG  224 (635)
Q Consensus       169 ~~~~~~---~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~  224 (635)
                      +..+..   ...+..+........+.+                  +.+|++++.|+.|++||+...   +++..+.+|..
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence            987632   222223322222222222                  245666666666666666543   34455566666


Q ss_pred             CeEEEEeeC------CEEEEeeCceeEEEec
Q psy18018        225 GVWSSQMAG------NIIISGSTDRTLKGWS  249 (635)
Q Consensus       225 ~v~~~~~~~------~~l~s~~~dg~i~~w~  249 (635)
                      .|.+++|+.      .+|++++.||+|++|+
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence            666666531      3344444444444444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.6e-31  Score=254.88  Aligned_cols=291  Identities=18%  Similarity=0.243  Sum_probs=230.1

Q ss_pred             eecCCCCCCceeeccCcceEEEEEEc-C----CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018         65 WRTRPIKDPKVLKGHDDHVITCLQFS-G----SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV  139 (635)
Q Consensus        65 wd~~~~~~~~~l~~h~~~vi~~~~~s-~----~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~  139 (635)
                      |+..+.+.++.+.+|.+.| +|++|+ .    ++|++|+.||.|++||+.+..                   ......+.
T Consensus        24 ~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-------------------~~~~~~~~   83 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSI-GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-------------------QTIPKAQQ   83 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCE-EEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-------------------CEEEEEEE
T ss_pred             CCCCCcceeEeccCCCCce-EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-------------------ceeEEEec
Confidence            6777888888999999998 999999 3    799999999999999987521                   23336778


Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee--ccCCCEEEEEeCCCcEEEEECCCCeE
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG--YALRSRIVSGSDDNTLKVWSATTGKC  215 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~  215 (635)
                      +|.++|++++|  ++++|++++.||.|++||+.+++.+....+...+.....  .+.+..+++++.||.|++||+.++++
T Consensus        84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            99999999999  899999999999999999999987775555555555554  45667899999999999999999999


Q ss_pred             EEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeE
Q psy18018        216 LRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALY  295 (635)
Q Consensus       216 ~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (635)
                      +..+..|. .+.++.+.+..+++++.++.+++|++..........                                   
T Consensus       164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------------------  207 (368)
T 3mmy_A          164 MMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI-----------------------------------  207 (368)
T ss_dssp             SEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC-----------------------------------
T ss_pred             EEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc-----------------------------------
Confidence            99988665 788888889999999999999999987542211000                                   


Q ss_pred             EEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcE----EEEecCCCeEEEEEcc
Q psy18018        296 VLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVH----VVSGSLDTSIRVWEAE  371 (635)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~~~~dg~i~v~~~~  371 (635)
                                                               .....+...++++.++...    +++++.||.|++|++.
T Consensus       208 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  246 (368)
T 3mmy_A          208 -----------------------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN  246 (368)
T ss_dssp             -----------------------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred             -----------------------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence                                                     0112233344555555444    9999999999999998


Q ss_pred             CC---ceEEeeeCCCc------------ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCC
Q psy18018        372 SG---NLRHTLMGHQS------------LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDT  436 (635)
Q Consensus       372 ~~---~~~~~~~~~~~------------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~  436 (635)
                      ..   .....+..|..            .|.+++|                               +|++++|++++.||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------------------sp~~~~l~s~~~dg  295 (368)
T 3mmy_A          247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-------------------------------HPVHGTLATVGSDG  295 (368)
T ss_dssp             CSCHHHHSEEEECSEEC----CCCEEECCEEEEEE-------------------------------CTTTCCEEEEETTS
T ss_pred             CCCccccceeeeeeecccccccccccccceEEEEE-------------------------------ecCCCEEEEEccCC
Confidence            77   45667777765            3555544                               46778889999999


Q ss_pred             cEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEEC
Q psy18018        437 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI  483 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~  483 (635)
                      .|++||+.+++.+..+.+|...|.+++|+  +++|++++.|+..+.|++
T Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999999999999999984  669999999886555544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-31  Score=252.75  Aligned_cols=242  Identities=19%  Similarity=0.274  Sum_probs=184.2

Q ss_pred             cCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ......++|+|++++|++|+.|+.|++||+.++.  .+..+.+|...|.+++|++.                        
T Consensus        13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~------------------------   68 (316)
T 3bg1_A           13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP------------------------   68 (316)
T ss_dssp             -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG------------------------
T ss_pred             cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC------------------------
Confidence            3455668899999999999999999999998765  46788999999999998510                        


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCC--ceeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                           .++++|++++.|++|++||++++  +....+.+|...|.+++|+    +.+|++++.|+.|++||+..+......
T Consensus        69 -----~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           69 -----MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             -----GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             -----CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence                 02334555555555555555554  3456678899999999985    458999999999999999876432222


Q ss_pred             cCCCcccccEEEEEec-------------------CCEEEEEeCCCcEEEEECCCCc---eeeeeccceecCceeEEecc
Q psy18018        493 SGRNKHQSAVTCLQFN-------------------SRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~~-------------------~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~  550 (635)
                      .....|...+.+++|+                   +++|++++.|+.|++||++...   ....+.           .|.
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-----------~h~  212 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-----------AHS  212 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-----------CCS
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-----------cCC
Confidence            2223477888888884                   2589999999999999997542   222222           378


Q ss_pred             CceecccccCCC----eEEEEecCCCeEEEEeCCCCc---e-EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeE
Q psy18018        551 QPLLCPHLQFNS----RFVITSSDDGTVKLWDVKTGE---F-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEE  622 (635)
Q Consensus       551 ~~v~~~~~s~~~----~~l~~~~~d~~v~iwd~~~~~---~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~  622 (635)
                      ..|.+++|+|++    ++||+++.|++|+|||+.+..   . ...+     ..|...|++++|+|++++||+++.||.  
T Consensus       213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~las~~~D~~--  285 (316)
T 3bg1_A          213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-----HKFNDVVWHVSWSITANILAVSGGDNK--  285 (316)
T ss_dssp             SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-----EECSSCEEEEEECTTTCCEEEEESSSC--
T ss_pred             CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-----hcCCCcEEEEEEcCCCCEEEEEcCCCe--
Confidence            899999999987    899999999999999998732   1 1122     246789999999999999999999998  


Q ss_pred             eEEEEEe
Q psy18018        623 TKLLVLD  629 (635)
Q Consensus       623 ~~l~~~d  629 (635)
                      ++||..+
T Consensus       286 v~lw~~~  292 (316)
T 3bg1_A          286 VTLWKES  292 (316)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            6666554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=260.45  Aligned_cols=275  Identities=16%  Similarity=0.215  Sum_probs=211.7

Q ss_pred             ccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc-----------eEEeeeCCC------------cceeEEEEeC---
Q psy18018        340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-----------LRHTLMGHQ------------SLTSGMELRN---  393 (635)
Q Consensus       340 ~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----------~~~~~~~~~------------~~v~~l~~~~---  393 (635)
                      ......+++|+|++++|++|+.||.|++|++.+++           ....+.+|.            ..|.+++|++   
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            44667788999999999999999999999999877           577889998            8899999973   


Q ss_pred             -CEEEEEeCCCcEEEEEccCCcce-------------------------------------------------eEEEEEe
Q psy18018        394 -NILVSGNADSTVKVWDIVSGTKK-------------------------------------------------LMFRICL  423 (635)
Q Consensus       394 -~~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------------~~~~~~~  423 (635)
                       ..+++++.|+.|++||+.++...                                                 .....++
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             58999999999999998763221                                                 1122478


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCC-Cceee-------eeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCce----
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAES-GNLRH-------TLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQC----  488 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~-~~~~~-------~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~----  488 (635)
                      |++++|+++ .|+.|++||+.+ ++...       .+.+|...|.+++++  + +++++++.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            899999998 899999999984 44443       356899999999985  3 6999999999999999998886    


Q ss_pred             eEEecCCCcccc------------cEEEEEe--cCCEEEEEeCCCcEEEEECCC-CceeeeeccceecCcee-EEeccC-
Q psy18018        489 LQTLSGRNKHQS------------AVTCLQF--NSRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFY-FLIYSQ-  551 (635)
Q Consensus       489 ~~~~~~~~~~~~------------~v~~~~~--~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~-~~~~~~-  551 (635)
                      ...+..   |..            .|.+++|  ++++|++++. +.|++||+++ ++.+..+..+....... ...... 
T Consensus       266 ~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          266 SKLFEE---PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             CEEECC---C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             eeEecc---CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence            667765   444            8999999  6899999998 9999999997 76666555431100000 000001 


Q ss_pred             --ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec---------------------------cCCCCCceEEE
Q psy18018        552 --PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL---------------------------DSGGSGGVVWR  602 (635)
Q Consensus       552 --~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~i~~  602 (635)
                        .+..++|+|++++|++|+.||.|++||+.+++.+......                           ........|..
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  421 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH  421 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence              1334899999999999999999999999999876422100                           01133567899


Q ss_pred             EEeCCCCeEEEEccCCC
Q psy18018        603 IRASETKLVCAVGSRNG  619 (635)
Q Consensus       603 l~~s~d~~~l~~~~~dg  619 (635)
                      ++|+|++.+||+++.++
T Consensus       422 ~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          422 TAWHPKENIIAVATTNN  438 (447)
T ss_dssp             EEECSSSSEEEEECSSC
T ss_pred             EEECCCCCEEEEEecce
Confidence            99999999999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.1e-30  Score=246.90  Aligned_cols=294  Identities=11%  Similarity=0.091  Sum_probs=196.9

Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccce
Q psy18018        207 VWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF  284 (635)
Q Consensus       207 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (635)
                      +|++.+.+++..+..|...|.+++|+  +++|++|+.|+ +++|+.........                          
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--------------------------   55 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--------------------------   55 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--------------------------
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--------------------------
Confidence            56677778888889999999999995  78898888776 78999765432110                          


Q ss_pred             eeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE-EEecCCC
Q psy18018        285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV-VSGSLDT  363 (635)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg  363 (635)
                                                                            ........+++.++++.+ ++++.++
T Consensus        56 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (355)
T 3vu4_A           56 ------------------------------------------------------QEMRHLSKVRMLHRTNYVAFVTGVKE   81 (355)
T ss_dssp             ------------------------------------------------------EECSCCCEEEECTTSSEEEEECSSTT
T ss_pred             ------------------------------------------------------eecCCeEEEEEcCCCCEEEEEECCcc
Confidence                                                                  000123445677777766 5678889


Q ss_pred             eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC
Q psy18018        364 SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA  443 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  443 (635)
                      .|++||..+++.+..+. +...|.++.++++.++++. ++.                                 |++||+
T Consensus        82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~---------------------------------i~i~d~  126 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSY-GDV---------------------------------ISVFKF  126 (355)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEE-TTE---------------------------------EEEEES
T ss_pred             EEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEE-cCE---------------------------------EEEEEC
Confidence            99999999999988886 5668999998876555442 344                                 555555


Q ss_pred             CCC-ceeeeeccCCccEEEEEecCCEEEE--EeCCCcEEEEECCCCc---------------e-eEEecCCCcccccEEE
Q psy18018        444 ESG-NLRHTLMGHQSLTSGMELRNNILVS--GNADSTVKVWDIVSGQ---------------C-LQTLSGRNKHQSAVTC  504 (635)
Q Consensus       444 ~~~-~~~~~~~~~~~~v~~~~~~~~~l~s--~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~~~~v~~  504 (635)
                      .++ +.+..+.. ...+.+++  ..+++.  |+.||.|++||+.+++               + +..+.+   |...|.+
T Consensus       127 ~~~~~~~~~~~~-~~~~~~~s--~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~---h~~~v~~  200 (355)
T 3vu4_A          127 GNPWKRITDDIR-FGGVCEFS--NGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA---HTNPIKM  200 (355)
T ss_dssp             STTCCBSSCCEE-EEEEEEEE--TTEEEEEESSCTTCEEEEECCC------------------CCEEECC---CSSCEEE
T ss_pred             CCCceeeEEecc-CCceEEEE--ccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc---cCCceEE
Confidence            544 44444433 22233333  366666  5889999999998765               1 566666   9999999


Q ss_pred             EEe--cCCEEEEEeCCCc-EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        505 LQF--NSRFVITSSDDGT-VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       505 ~~~--~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ++|  ++++|++++.|++ |++||+++++.+..+...         .|...|++++|+||+++|++++.|++|+|||+..
T Consensus       201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g---------~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG---------LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---------TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---------CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            999  6899999999998 999999999887766521         1678999999999999999999999999999976


Q ss_pred             CceEE--eeee---------------c-cCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        582 GEFIR--NLVS---------------L-DSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       582 ~~~~~--~~~~---------------~-~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      +....  .+..               . .+.....+...++|++||++|++++.||.  +++|.+..+.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~--~~~~~~~~~~~  339 (355)
T 3vu4_A          272 DQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM--IETFKVVFDDE  339 (355)
T ss_dssp             CSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE--EEEEEEEEETT
T ss_pred             CCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe--EEEEEEEcCCC
Confidence            53211  1100               0 00112233467999999999999999998  55665555444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.6e-32  Score=263.61  Aligned_cols=303  Identities=16%  Similarity=0.101  Sum_probs=203.2

Q ss_pred             EeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc--cceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECC
Q psy18018        137 VLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE--ECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSAT  211 (635)
Q Consensus       137 ~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~  211 (635)
                      .+..|.++|++++|  ++++|++++.|+.|++||+.++  +.+..+..+...+.. .+.+++.+|++++.|+.|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34457789999999  8999999999999999999988  666677666554444 444567899999999999999998


Q ss_pred             CCe---EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecc
Q psy18018        212 TGK---CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL  288 (635)
Q Consensus       212 ~~~---~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (635)
                      +++   ....+.+|...|.+++|                                                         
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~---------------------------------------------------------  108 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRW---------------------------------------------------------  108 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEEC---------------------------------------------------------
T ss_pred             CCCceeeeeEecccCCceEEEEE---------------------------------------------------------
Confidence            876   56677788888887775                                                         


Q ss_pred             ccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEE
Q psy18018        289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW  368 (635)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~  368 (635)
                                                                                   +|++++|++++.|+.|++|
T Consensus       109 -------------------------------------------------------------~~~~~~l~~~~~d~~i~iw  127 (377)
T 3dwl_C          109 -------------------------------------------------------------SPNEDKFAVGSGARVISVC  127 (377)
T ss_dssp             -------------------------------------------------------------CTTSSCCEEEESSSCEEEC
T ss_pred             -------------------------------------------------------------CCCCCEEEEEecCCeEEEE
Confidence                                                                         3344444455555555555


Q ss_pred             EccCCc---eEEeeeC-CCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEe
Q psy18018        369 EAESGN---LRHTLMG-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE  442 (635)
Q Consensus       369 ~~~~~~---~~~~~~~-~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  442 (635)
                      |+.+++   ....+.. |...|.+++|+  +.+|++++.|+.|++||+..........                 ...|.
T Consensus       128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~  190 (377)
T 3dwl_C          128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE-----------------ASVWG  190 (377)
T ss_dssp             CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC-----------------SCSSC
T ss_pred             EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc-----------------ccccc
Confidence            554443   2445555 88999999997  4578888888888888875432110000                 00010


Q ss_pred             --CCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCce----eEEecCCCcccccEEEEEe--cCCEE
Q psy18018        443 --AESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQC----LQTLSGRNKHQSAVTCLQF--NSRFV  512 (635)
Q Consensus       443 --~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~--~~~~l  512 (635)
                        +..++++..+ +|...|.+++++  +++|++++.|+.|++||+.+++.    +..+..   |...|.+++|  ++++|
T Consensus       191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l  266 (377)
T 3dwl_C          191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL---SQLPLRSLLWANESAIV  266 (377)
T ss_dssp             SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC---SSSCEEEEEEEETTEEE
T ss_pred             cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC---CCCceEEEEEcCCCCEE
Confidence              0234556666 899999999984  66999999999999999999887    666666   8889999999  68889


Q ss_pred             EEEeCCCcEEEEECCCCc--eeeeeccceec---------------------------------------CceeEEeccC
Q psy18018        513 ITSSDDGTVKLWDVKTGE--FSTPLMSSFIL---------------------------------------NPFYFLIYSQ  551 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~---------------------------------------~~~~~~~~~~  551 (635)
                      ++++.++.+ +|+.....  ....+......                                       .......|..
T Consensus       267 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~  345 (377)
T 3dwl_C          267 AAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN  345 (377)
T ss_dssp             EEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSS
T ss_pred             EEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccc
Confidence            888766655 77665322  11111100000                                       0001112888


Q ss_pred             ceecccccCCC-e---EEEEecCCCeEEEEeC
Q psy18018        552 PLLCPHLQFNS-R---FVITSSDDGTVKLWDV  579 (635)
Q Consensus       552 ~v~~~~~s~~~-~---~l~~~~~d~~v~iwd~  579 (635)
                      .|+++++.++. .   .|+|++.||.|+|||+
T Consensus       346 ~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          346 MIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             eeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            99999976543 3   6999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.6e-30  Score=247.72  Aligned_cols=277  Identities=10%  Similarity=0.111  Sum_probs=211.4

Q ss_pred             ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC---CCceeeccCcceEEEEEEc--CC-
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK---DPKVLKGHDDHVITCLQFS--GS-   92 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~---~~~~l~~h~~~vi~~~~~s--~~-   92 (635)
                      +...+|.+.| ++++|+    |++++|++++.++        .+.+||..+++   ....+.+|...+ .+++|+  ++ 
T Consensus         5 ~~~~~h~~~v-~~~~~s----~~~~~l~~~~~d~--------~v~iw~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~   70 (342)
T 1yfq_A            5 QIEQAPKDYI-SDIKII----PSKSLLLITSWDG--------SLTVYKFDIQAKNVDLLQSLRYKHPL-LCCNFIDNTDL   70 (342)
T ss_dssp             ECSSCCSSCE-EEEEEE----GGGTEEEEEETTS--------EEEEEEEETTTTEEEEEEEEECSSCE-EEEEEEESSSE
T ss_pred             ecccCCCCcE-EEEEEc----CCCCEEEEEcCCC--------eEEEEEeCCCCccccceeeeecCCce-EEEEECCCCCc
Confidence            4456999998 999999    9999999997644        44569998877   355667899888 999999  88 


Q ss_pred             EEEEeeCCCcEEEEEC-CCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeC--CCcceEEEEe-cCCEEEEEeCCCeEEEEe
Q psy18018         93 RIVSGSDDNTLKVWSA-TTGKCLLVSGSRDATLRVWHIESGECLHVLVG--HLAAVRCVQY-DGKLVVSGAYDYMVKIWN  168 (635)
Q Consensus        93 ~l~s~~~d~~v~vWd~-~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~--h~~~v~~l~~-~~~~l~s~~~dg~v~iwd  168 (635)
                      +|++++.||.|++||+ .+++                      ...+.+  |...|.+++| .++.|++++.|+.|++||
T Consensus        71 ~l~~~~~dg~i~~wd~~~~~~----------------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd  128 (342)
T 1yfq_A           71 QIYVGTVQGEILKVDLIGSPS----------------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSS----------------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCeEEEEEeccCCc----------------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEc
Confidence            9999999999999988 6543                      255667  9999999999 589999999999999999


Q ss_pred             CCC---------ccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeE--EEEEeCCCCCeEEEEeeCCEE
Q psy18018        169 PDT---------EECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT-GKC--LRTLIGHTGGVWSSQMAGNII  236 (635)
Q Consensus       169 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~--~~~~~~h~~~v~~~~~~~~~l  236 (635)
                      +.+         ++.+..+.....+ ..+.+.++. +++++.++.|++||+.+ +..  ......|...+.++.      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~------  200 (342)
T 1yfq_A          129 PRNYGDGVIAVKNLNSNNTKVKNKI-FTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA------  200 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCE-EEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE------
T ss_pred             ccccccccccccCCeeeEEeeCCce-EEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE------
Confidence            988         7766666543333 344444444 88899999999999887 442  223334555555554      


Q ss_pred             EEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccccee
Q psy18018        237 ISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWR  316 (635)
Q Consensus       237 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (635)
                                                                                                      
T Consensus       201 --------------------------------------------------------------------------------  200 (342)
T 1yfq_A          201 --------------------------------------------------------------------------------  200 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCC------ceEEeeeCCCc-----
Q psy18018        317 FLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESG------NLRHTLMGHQS-----  384 (635)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~------~~~~~~~~~~~-----  384 (635)
                                                      ++| +++++++++.+|.|++|++...      +....+..|..     
T Consensus       201 --------------------------------~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          201 --------------------------------LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             --------------------------------ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             --------------------------------ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence                                            555 5666666666666666666654      55555655544     


Q ss_pred             ----ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-CccE
Q psy18018        385 ----LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-QSLT  459 (635)
Q Consensus       385 ----~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v  459 (635)
                          .|.+++|+                               |++++|++++.||.|++||+.+++.+..+.+| ...|
T Consensus       249 ~~~~~i~~~~~s-------------------------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          249 NLAYPVNSIEFS-------------------------------PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             SSCCCEEEEEEC-------------------------------TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred             ccceeEEEEEEc-------------------------------CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence                66666664                               56777888888889999999999999999998 9999


Q ss_pred             EEEEecCCEEEEEeCCCc-EEEEE
Q psy18018        460 SGMELRNNILVSGNADST-VKVWD  482 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~dg~-i~iwd  482 (635)
                      .+++.++++|++++.||. .+.+.
T Consensus       298 ~~~~~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          298 VKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEECSSEEEEEEECTHHHHCSS
T ss_pred             eEecCCCCeEEEEecCCccccccc
Confidence            999988889999999998 55544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=3.8e-30  Score=247.72  Aligned_cols=305  Identities=17%  Similarity=0.233  Sum_probs=200.3

Q ss_pred             EEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc----ceeeccccceeEEeeeccC---CCEEEEEeCCCcEE
Q psy18018        136 HVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE----CLHAELQETEVELSHGYAL---RSRIVSGSDDNTLK  206 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~  206 (635)
                      ..+.+|.++|++++|  ++++|++++.||.|++||+.++.    ....+..+...+..+.+.+   +.+|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356799999999999  89999999999999999998764    4444555555555555543   78999999999999


Q ss_pred             EEECCCC---------eEEEEEeCCCCCeEEEEee----CCEEEEeeCceeEEEecccceeeeccccccccCccceeeee
Q psy18018        207 VWSATTG---------KCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMM  273 (635)
Q Consensus       207 vwd~~~~---------~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  273 (635)
                      +||+.++         +++..+.+|...|.+++|+    ++++++++.||.|++||+.+.....                
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----------------  148 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR----------------  148 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT----------------
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc----------------
Confidence            9999887         6678888999999999984    6678888888888888865431100                


Q ss_pred             eeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecC
Q psy18018        274 QLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG  353 (635)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  353 (635)
                                                                                              .  +... 
T Consensus       149 ------------------------------------------------------------------------~--~~~~-  153 (351)
T 3f3f_A          149 ------------------------------------------------------------------------S--WTLT-  153 (351)
T ss_dssp             ------------------------------------------------------------------------C--CEEE-
T ss_pred             ------------------------------------------------------------------------c--cccc-
Confidence                                                                                    0  0000 


Q ss_pred             cEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS  433 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~  433 (635)
                               ..+..       .......|...+.+++|++.                            ..++..+++++
T Consensus       154 ---------~~~~~-------~~~~~~~~~~~~~~~~~~p~----------------------------~~~~~~l~~~~  189 (351)
T 3f3f_A          154 ---------SEMKV-------LSIPPANHLQSDFCLSWCPS----------------------------RFSPEKLAVSA  189 (351)
T ss_dssp             ---------EEEES-------CSCCCSSCSCCCEEEEECCC----------------------------SSSCCEEEEEE
T ss_pred             ---------ccccc-------cccccCCcccceeEEEeccC----------------------------CCCCcEEEEec
Confidence                     00000       00011245667777777521                            01255677777


Q ss_pred             CCCcEEEEeCCCCce--eeeeccCCccEEEEEecC------CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEE
Q psy18018        434 LDTSIRVWEAESGNL--RHTLMGHQSLTSGMELRN------NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCL  505 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  505 (635)
                      .++.+.+|+...++.  ...+.+|...|.++.+++      ++|++++.||.|++||+..+........   ........
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~  266 (351)
T 3f3f_A          190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE---SLTNSNMF  266 (351)
T ss_dssp             TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred             CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC---cccceecc
Confidence            777777776666654  667788999999999853      4899999999999999987654443322   22222222


Q ss_pred             Ee--cCCEEE----EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        506 QF--NSRFVI----TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       506 ~~--~~~~l~----~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      ..  ....+.    .+.....+.+|+..+.+.+..+..           |...|++++|+|++++|++++.||.|++||+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-----------HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             ------------------------CCSEEEEEEEEECT-----------TSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCCcccccccccccccccceeeeecccccccEEEEEec-----------ccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence            22  122222    223344455555554444444433           7889999999999999999999999999999


Q ss_pred             CCCceEEeee
Q psy18018        580 KTGEFIRNLV  589 (635)
Q Consensus       580 ~~~~~~~~~~  589 (635)
                      .+++.+..+.
T Consensus       336 ~~~~~~~~~~  345 (351)
T 3f3f_A          336 TYSNEFKCMS  345 (351)
T ss_dssp             CTTSCEEEEE
T ss_pred             CcCcchhhee
Confidence            9988776664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.98  E-value=5e-28  Score=265.21  Aligned_cols=471  Identities=12%  Similarity=0.080  Sum_probs=319.4

Q ss_pred             cccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCC
Q psy18018         24 HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDN  101 (635)
Q Consensus        24 h~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~  101 (635)
                      +...+ ++.+||    |  +.||..+.         ..+.+|+..+++ .+.+.+|.+.+ .+++||  |++||.++.+.
T Consensus        13 ~~~~~-~~~~~S----~--~~iaf~~~---------~~l~~~~~~gg~-~~~lt~~~~~v-~~~~~SPDG~~la~~s~~~   74 (1045)
T 1k32_A           13 MPNLL-LNPDIH----G--DRIIFVCC---------DDLWEHDLKSGS-TRKIVSNLGVI-NNARFFPDGRKIAIRVMRG   74 (1045)
T ss_dssp             CCCCC-EEEEEE----T--TEEEEEET---------TEEEEEETTTCC-EEEEECSSSEE-EEEEECTTSSEEEEEEEES
T ss_pred             ccceE-eCcEEe----C--CEEEEEEC---------CcEEEEECCCCc-EEEeeeCCCcc-cCeEECCCCCEEEEEEeec
Confidence            34556 899999    5  46766653         245579988765 56788898887 999999  99999886541


Q ss_pred             cEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcce-------EEEEe--cCCEEEEEeCC------CeEEE
Q psy18018        102 TLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAV-------RCVQY--DGKLVVSGAYD------YMVKI  166 (635)
Q Consensus       102 ~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v-------~~l~~--~~~~l~s~~~d------g~v~i  166 (635)
                      .      +         ..+..|++||+.+++ ...+..|...+       .+++|  ||+.+++++.+      ..|..
T Consensus        75 ~------~---------~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~  138 (1045)
T 1k32_A           75 S------S---------LNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYR  138 (1045)
T ss_dssp             T------T---------CCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEE
T ss_pred             c------C---------CCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEE
Confidence            0      0         011234455555555 56677888888       89999  88877777754      45778


Q ss_pred             EeCCCccceeeccccceeEEeeeccCCCEEEEEeC------------CCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCC
Q psy18018        167 WNPDTEECLHAELQETEVELSHGYALRSRIVSGSD------------DNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN  234 (635)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  234 (635)
                      |++.+++........ ... .. ++++ .+++++.            +....+|....+.....+.+|...+.++.|+++
T Consensus       139 ~~~~~g~~~~l~~~~-~~~-~~-~spG-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d  214 (1045)
T 1k32_A          139 VENDGINFVPLNLGP-ATH-IL-FADG-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH  214 (1045)
T ss_dssp             EEGGGTEEEECCSCS-CSE-EE-EETT-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred             EECCCCCeEEecCCC-cce-ee-eCCC-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence            888777643322222 111 12 3335 7777642            334566654333445666899999999999866


Q ss_pred             E-EEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccc
Q psy18018        235 I-IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR  313 (635)
Q Consensus       235 ~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (635)
                      . +++++.|+.+++|.+........                                                       
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~-------------------------------------------------------  239 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLR-------------------------------------------------------  239 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCE-------------------------------------------------------
T ss_pred             EEEEEEeccCceEEEEEeCCCCcce-------------------------------------------------------
Confidence            4 45667789999997643110000                                                       


Q ss_pred             ceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC-----------C
Q psy18018        314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-----------H  382 (635)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-----------~  382 (635)
                                             ...........+|+|+|++++.+ .++.|++|+..... +..+..           |
T Consensus       240 -----------------------~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~  294 (1045)
T 1k32_A          240 -----------------------KHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIIS  294 (1045)
T ss_dssp             -----------------------ECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEE
T ss_pred             -----------------------EecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccccccccccc
Confidence                                   00000122345799999999887 48899999985443 335544           3


Q ss_pred             CcceeEEEEe-C--CEEEEEeCCCcEEEEEccCCcce---------eEEEEEeeCCcEEEEEeCCCcEE-EEeCCCCcee
Q psy18018        383 QSLTSGMELR-N--NILVSGNADSTVKVWDIVSGTKK---------LMFRICLFDGVHVVSGSLDTSIR-VWEAESGNLR  449 (635)
Q Consensus       383 ~~~v~~l~~~-~--~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~  449 (635)
                      ...+.+++|+ +  ..+++++ ++.+.+|++..+...         .....++ +|+.++.++.++.+. +|++.+++..
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~  372 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE  372 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce
Confidence            3468888887 4  4677666 889999998766432         2223366 889999999888898 9999877654


Q ss_pred             eeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC------
Q psy18018        450 HTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG------  519 (635)
Q Consensus       450 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~------  519 (635)
                      . +.+|...+..+++  ++++|++++.++.|++||+.+++.......   |...+.+++|  ||++|++++.++      
T Consensus       373 ~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          373 K-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             E-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             E-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccC
Confidence            4 4477778888777  567999999999999999999988777655   6677777777  789998887654      


Q ss_pred             ----cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce-------EEee
Q psy18018        520 ----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF-------IRNL  588 (635)
Q Consensus       520 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~  588 (635)
                          .|++||+.+++ ...+..           |...+..++|+|||++|++++.++...+|+......       +..+
T Consensus       449 ~~~~~i~l~d~~~g~-~~~l~~-----------~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRK-IFAATT-----------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  516 (1045)
T ss_dssp             CCEEEEEEEETTTTE-EEECSC-----------SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             CCCCeEEEEECCCCc-EEEeeC-----------CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence                89999999876 333322           455677899999999999999888888887543322       1000


Q ss_pred             --------------------------e-----eccCCCCCceEEEEEeCCCCeEEEE-----------ccCCCeeEeEEE
Q psy18018        589 --------------------------V-----SLDSGGSGGVVWRIRASETKLVCAV-----------GSRNGTEETKLL  626 (635)
Q Consensus       589 --------------------------~-----~~~~~~~~~~i~~l~~s~d~~~l~~-----------~~~dg~~~~~l~  626 (635)
                                                .     ......+.+.+..++|+|||+++++           .+.++.  .++|
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~--~~l~  594 (1045)
T 1k32_A          517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK--GVLL  594 (1045)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC--EEEE
T ss_pred             EeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCC--ceEE
Confidence                                      0     0001235577899999999998886           122332  5688


Q ss_pred             EEeeec
Q psy18018        627 VLDFDV  632 (635)
Q Consensus       627 ~~d~~~  632 (635)
                      .||+..
T Consensus       595 ~~d~~~  600 (1045)
T 1k32_A          595 KYDVKT  600 (1045)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            887643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.2e-30  Score=249.09  Aligned_cols=245  Identities=19%  Similarity=0.234  Sum_probs=187.4

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEcc--CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ...++|+|++++|++|+.||.|++|++.  +++.+..+.+|...|.+++|++.                           
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------   66 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---------------------------   66 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG---------------------------
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCC---------------------------
Confidence            3445578888888888888999999887  55677788899999999998610                           


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCc--eeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCce--eEEec
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQC--LQTLS  493 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~  493 (635)
                        .++++|++++.|+.|++||+.+++  ....+..|...|.++.++    ++++++++.|+.|++||+.++..  ...+.
T Consensus        67 --~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           67 --KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             --GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred             --CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec
Confidence              114445555555555666655554  566777899999999984    66999999999999999988743  33444


Q ss_pred             CCCcccccEEEEEec---------------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        494 GRNKHQSAVTCLQFN---------------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       494 ~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      .   |...|.+++|+               +.++++++.|+.|++||++++........       ....|...|.+++|
T Consensus       145 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          145 A---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------TLEGHSDWVRDVAW  214 (379)
T ss_dssp             C---CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-------EECCCSSCEEEEEE
T ss_pred             C---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-------EEecccCcEeEEEE
Confidence            4   88899999993               68999999999999999987653322211       12247889999999


Q ss_pred             cCC---CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        559 QFN---SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       559 s~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +|+   +++|++++.||.|++||+.+++............+...|++++|+|+|++|++++.||.  +++|.++
T Consensus       215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--i~iw~~~  286 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLWKEN  286 (379)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS--EEEEEEE
T ss_pred             CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc--EEEEeCC
Confidence            999   99999999999999999998752222222222458889999999999999999999998  5555554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=8.9e-30  Score=245.10  Aligned_cols=298  Identities=14%  Similarity=0.146  Sum_probs=208.6

Q ss_pred             CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC----CCceeeccCcceEEEEEEc--
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK----DPKVLKGHDDHVITCLQFS--   90 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~----~~~~l~~h~~~vi~~~~~s--   90 (635)
                      .++.+.||.+.| +|++|+    |+|++||+++.++        .+.+||..++.    ....+.+|...| ++++|+  
T Consensus         3 ~~~~~~gH~~~v-~~~~~~----~~~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~   68 (351)
T 3f3f_A            3 MQPFDSGHDDLV-HDVVYD----FYGRHVATCSSDQ--------HIKVFKLDKDTSNWELSDSWRAHDSSI-VAIDWASP   68 (351)
T ss_dssp             CCCEECCCSSCE-EEEEEC----SSSSEEEEEETTS--------EEEEEEECSSSCCEEEEEEEECCSSCE-EEEEECCG
T ss_pred             ccccCcccccce-eEEEEc----CCCCEEEEeeCCC--------eEEEEECCCCCCcceecceeccCCCcE-EEEEEcCC
Confidence            357889999998 999999    9999999998654        44569998763    556778999988 999997  


Q ss_pred             --CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c--CCEEEEEeCCCeE
Q psy18018         91 --GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D--GKLVVSGAYDYMV  164 (635)
Q Consensus        91 --~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~--~~~l~s~~~dg~v  164 (635)
                        +++|++++.|+.|++||+.+++..       .     .....+++..+.+|...|.+++|  +  +.+|++++.||.|
T Consensus        69 ~d~~~l~s~~~dg~v~vwd~~~~~~~-------~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           69 EYGRIIASASYDKTVKLWEEDPDQEE-------C-----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             GGCSEEEEEETTSCEEEEEECTTSCT-------T-----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             CCCCEEEEEcCCCeEEEEecCCCccc-------c-----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence              689999999999999998865410       0     00111567788899999999999  5  8999999999999


Q ss_pred             EEEeCCCccceeeccc-------------c-ceeEEeeeccC---CCEEEEEeCCCcEEEEECCCCeE--EEEEeCCCCC
Q psy18018        165 KIWNPDTEECLHAELQ-------------E-TEVELSHGYAL---RSRIVSGSDDNTLKVWSATTGKC--LRTLIGHTGG  225 (635)
Q Consensus       165 ~iwd~~~~~~~~~~~~-------------~-~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~  225 (635)
                      ++||+.+++.+..+..             + ..+......+.   +..+++++.++.+.+|+...++.  +..+.+|...
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL  216 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred             EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence            9999998876544321             1 22233333333   78999999999999888887765  6778899999


Q ss_pred             eEEEEee--C----CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        226 VWSSQMA--G----NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       226 v~~~~~~--~----~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      |.+++|+  +    ++|++++.||.|++||+...........                                      
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------  258 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE--------------------------------------  258 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------------
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC--------------------------------------
Confidence            9999995  3    5899999999999999876422110000                                      


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc----EEEEecCCCeEEEEEccCCce
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV----HVVSGSLDTSIRVWEAESGNL  375 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l~~~~~dg~i~v~~~~~~~~  375 (635)
                                                              ..........++...    ....+.....+.+|+....+.
T Consensus       259 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (351)
T 3f3f_A          259 ----------------------------------------SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL  298 (351)
T ss_dssp             ------------------------------------------------------------------------CCSEEEEE
T ss_pred             ----------------------------------------cccceeccCCCcccccccccccccccceeeeecccccccE
Confidence                                                    000000000111111    122333445667777777788


Q ss_pred             EEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        376 RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       376 ~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      +..+.+|...|.+++|+  +++|++++.||.|++|++.+++....
T Consensus       299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence            88999999999999997  55777777888888877776654443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-31  Score=256.33  Aligned_cols=308  Identities=12%  Similarity=0.043  Sum_probs=218.8

Q ss_pred             cceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEE
Q psy18018         26 DHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKV  105 (635)
Q Consensus        26 ~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~v  105 (635)
                      ++| .+|+||    |||+++|+++.++.+.          |.+.+   +.+++|...+ .+++|+..-     .++.+.+
T Consensus        16 ~~v-~sv~~S----pDG~~iASas~D~TV~----------d~~~~---~~l~gh~~~v-~~V~FsPdg-----~~~~~~~   71 (588)
T 2j04_A           16 DWK-NNLTWA----RDGTLYLTTFPDISIG----------QPKYA---KDINCNSKNL-FHVKEFPLE-----FENKLDF   71 (588)
T ss_dssp             SSS-CCEEEC----TTSCEEEECSSSEEEE----------EECCC---SCCSSBGGGT-EEEEEECCC-----CCCTTTT
T ss_pred             ccE-EEEEEC----CCCCEEEEEcCCceee----------ccccc---ceecCCCccE-EEEEECCCC-----CcceEEE
Confidence            777 899999    9999999999875543          44444   4457999999 899998211     3444333


Q ss_pred             EECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccc-
Q psy18018        106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQET-  182 (635)
Q Consensus       106 Wd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-  182 (635)
                      |+.+                      +.....+ .|...|.+++|  ||++||+++.||+|++||.+.  .+..+.++. 
T Consensus        72 ~~~~----------------------~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~  126 (588)
T 2j04_A           72 ELAQ----------------------QNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGN  126 (588)
T ss_dssp             SCCC----------------------SSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSC
T ss_pred             EeCC----------------------CceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCc
Confidence            3322                      1112222 56889999999  999999999999999999655  444444222 


Q ss_pred             ----eeEEeeeccCCCEEEEEeCCCcEEEEECCCCe-------EEEEE----eCCCCCeEEEEeeCCEEEEeeCceeEEE
Q psy18018        183 ----EVELSHGYALRSRIVSGSDDNTLKVWSATTGK-------CLRTL----IGHTGGVWSSQMAGNIIISGSTDRTLKG  247 (635)
Q Consensus       183 ----~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~----~~h~~~v~~~~~~~~~l~s~~~dg~i~~  247 (635)
                          .+....+.++++.|++|+.||+|++||+.++.       .+.++    .+|...|.+++                 
T Consensus       127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa-----------------  189 (588)
T 2j04_A          127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV-----------------  189 (588)
T ss_dssp             STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE-----------------
T ss_pred             cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE-----------------
Confidence                36666777888999999999999999998875       35666    55666777766                 


Q ss_pred             ecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhh
Q psy18018        248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE  327 (635)
Q Consensus       248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (635)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (588)
T 2j04_A          190 --------------------------------------------------------------------------------  189 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce---EEee-eCCCcceeEEEEeCCEEEEEeCCC
Q psy18018        328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL---RHTL-MGHQSLTSGMELRNNILVSGNADS  403 (635)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---~~~~-~~~~~~v~~l~~~~~~l~s~~~dg  403 (635)
                                           |+|+|  +++++.|+.|++|++.++..   ...+ .+|...|.+++|+++.+++++   
T Consensus       190 ---------------------wSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~---  243 (588)
T 2j04_A          190 ---------------------WYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC---  243 (588)
T ss_dssp             ---------------------EETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC---
T ss_pred             ---------------------EcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe---
Confidence                                 66666  66666677777777766552   3455 478889999998755554443   


Q ss_pred             cEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCC--EEEEEeCCCcEE
Q psy18018        404 TVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN--ILVSGNADSTVK  479 (635)
Q Consensus       404 ~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg~i~  479 (635)
                                                     +++|++||+.+++......+|...+..+.+  +++  .+++++.||+ +
T Consensus       244 -------------------------------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-k  291 (588)
T 2j04_A          244 -------------------------------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-K  291 (588)
T ss_dssp             -------------------------------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-E
T ss_pred             -------------------------------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-E
Confidence                                           355666666666553444479999998888  544  7999999999 9


Q ss_pred             EEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018        480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                      +|....                +. +..++..+++.  |+++++|+...+. ...+.            +...|.+++||
T Consensus       292 lw~~d~----------------~~-~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~------------~~~~I~~va~S  339 (588)
T 2j04_A          292 VLLEDE----------------LH-VTADNIIAPYL--EKKFKKWSTIWNE-FNNYE------------TTLVIHGISLS  339 (588)
T ss_dssp             EEESSS----------------EE-EECCCSSHHHH--HHHHHHTTTTTTS-SSSSC------------CEEEEEEEEEC
T ss_pred             EEeecc----------------EE-ECCCceEEEEc--CCEEEEEECCCCc-eeeec------------cceEEEEEEEC
Confidence            999771                22 45566666664  8999999976544 22221            24468999999


Q ss_pred             CCCeEEEEec
Q psy18018        560 FNSRFVITSS  569 (635)
Q Consensus       560 ~~~~~l~~~~  569 (635)
                      |||+.+|+++
T Consensus       340 PdG~~lA~~~  349 (588)
T 2j04_A          340 PDGYSIAIVY  349 (588)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999885

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=242.29  Aligned_cols=265  Identities=18%  Similarity=0.232  Sum_probs=195.0

Q ss_pred             CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC  147 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~  147 (635)
                      |+++..+.+|.+.| ++++|+  +++||+++.||.|++||+..+                   +++.+..+.+|.++|++
T Consensus         1 G~~~~~~~~h~~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~~h~~~v~~   60 (379)
T 3jrp_A            1 GSMVVIANAHNELI-HDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWR   60 (379)
T ss_dssp             ----CCEEECCCCE-EEEEECSSSSEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSSCEEE
T ss_pred             CCccEEecCCcccE-EEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------cceeeeEecCCCCcEEE
Confidence            35678899999998 999999  899999999999999997632                   34667788899999999


Q ss_pred             EEe--c--CCEEEEEeCCCeEEEEeCCCcc--ceeeccccceeEE-eeeccC--CCEEEEEeCCCcEEEEECCCCe--EE
Q psy18018        148 VQY--D--GKLVVSGAYDYMVKIWNPDTEE--CLHAELQETEVEL-SHGYAL--RSRIVSGSDDNTLKVWSATTGK--CL  216 (635)
Q Consensus       148 l~~--~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~-~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~  216 (635)
                      ++|  +  +++|++++.||.|++||+.+++  .+..+..+..... ....+.  +..+++++.|+.|++||+.++.  ..
T Consensus        61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  140 (379)
T 3jrp_A           61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP  140 (379)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred             EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence            999  4  8999999999999999999886  5555554544444 444455  6899999999999999998873  44


Q ss_pred             EEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018        217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV  296 (635)
Q Consensus       217 ~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (635)
                      ..+.+|...|.++.|........+                                                        
T Consensus       141 ~~~~~~~~~v~~~~~~~~~~~~~~--------------------------------------------------------  164 (379)
T 3jrp_A          141 IIIDAHAIGVNSASWAPATIEEDG--------------------------------------------------------  164 (379)
T ss_dssp             EEEECCTTCEEEEEECCCC-------------------------------------------------------------
T ss_pred             EEecCCCCceEEEEEcCccccccc--------------------------------------------------------
Confidence            566789999998887532111000                                                        


Q ss_pred             EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--
Q psy18018        297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--  374 (635)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--  374 (635)
                                                                       .....+++.++++++.||.|++||+.++.  
T Consensus       165 -------------------------------------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          165 -------------------------------------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQT  195 (379)
T ss_dssp             ------------------------------------------------------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred             -------------------------------------------------cccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence                                                             00124578889999999999999988664  


Q ss_pred             --eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC---CcEEEEEeCCCcEEEEeCCCCc--
Q psy18018        375 --LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD---GVHVVSGSLDTSIRVWEAESGN--  447 (635)
Q Consensus       375 --~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~--  447 (635)
                        ....+.+|...|.+++|+                               |+   +++|++++.|+.|++||+.++.  
T Consensus       196 ~~~~~~~~~h~~~v~~~~~s-------------------------------p~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          196 YVLESTLEGHSDWVRDVAWS-------------------------------PTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEEC-------------------------------CCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             eeeEEEEecccCcEeEEEEC-------------------------------CCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence              446778899999999886                               33   4455555556666666655542  


Q ss_pred             ---eeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeE
Q psy18018        448 ---LRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       448 ---~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~  490 (635)
                         .......|...+.++++  ++++|++++.||.|++|++.......
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence               12222347888998888  46699999999999999998654433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=6.3e-30  Score=250.43  Aligned_cols=228  Identities=19%  Similarity=0.265  Sum_probs=170.1

Q ss_pred             cCcEEEEecCCCeEEEEEccCC-------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESG-------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF  424 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  424 (635)
                      ++.+|++|+.||.|++|++.++       +.+..+.+|...|.+++|+                               |
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------------------------------p  141 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH-------------------------------P  141 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC-------------------------------S
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEEC-------------------------------c
Confidence            3344444444444444444433       4566788899999999986                               3


Q ss_pred             CC-cEEEEEeCCCcEEEEeCCCCceeeee--ccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEe-cCCCcc
Q psy18018        425 DG-VHVVSGSLDTSIRVWEAESGNLRHTL--MGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTL-SGRNKH  498 (635)
Q Consensus       425 ~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~  498 (635)
                      ++ ..|++++.|+.|++||+.+++.+..+  .+|...|.++++  ++++|++++.|+.|++||+++++.+..+ ..   |
T Consensus       142 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~  218 (402)
T 2aq5_A          142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP---H  218 (402)
T ss_dssp             SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS---S
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC---C
Confidence            43 46677777777888888888888888  789999999998  4679999999999999999999988888 45   5


Q ss_pred             ccc-EEEEEe--cCCEEEEE---eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE-ecCC
Q psy18018        499 QSA-VTCLQF--NSRFVITS---SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT-SSDD  571 (635)
Q Consensus       499 ~~~-v~~~~~--~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d  571 (635)
                      ... +.++.|  ++++|+++   +.|+.|++||+++++......         ...+...+.+++|+|++++|++ ++.|
T Consensus       219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ---------ELDTSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE---------ECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred             CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE---------eccCCCceeEEEEcCCCCEEEEEEcCC
Confidence            444 777777  68899998   799999999999876421111         1125678999999999999864 5679


Q ss_pred             CeEEEEeCCCCce-EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        572 GTVKLWDVKTGEF-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       572 ~~v~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +.|++||+.+++. +..+..+   .+..+|.+++|+|++.++++++  +.  +++|.++
T Consensus       290 g~i~i~d~~~~~~~~~~l~~~---~~~~~v~~~~~sp~~~~~~s~~--~~--~~~~~l~  341 (402)
T 2aq5_A          290 SSIRYFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNKC--EI--ARFYKLH  341 (402)
T ss_dssp             SCEEEEEECSSTTCEEEEEEE---CCSSCCSEEEECCGGGSCGGGT--EE--EEEEEEE
T ss_pred             CeEEEEEecCCCcceEeeccc---ccCCcccceEEecccccceecc--ee--EEEEEcC
Confidence            9999999999884 4444332   3568899999999999987644  33  5566654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=5.4e-29  Score=238.33  Aligned_cols=287  Identities=11%  Similarity=0.097  Sum_probs=199.8

Q ss_pred             EEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEE-EEEeCC
Q psy18018        126 VWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI-VSGSDD  202 (635)
Q Consensus       126 vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d  202 (635)
                      +|++.+.+++..+.+|..+|++++|  |+++|++|+.++ +++||+.+++......... ..........+.+ ++++.|
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSST
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCc
Confidence            4566677778888899999999999  899999998775 7899999887665544332 2222333344444 678888


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccce-eeeccccccccCccceeeeeeeeccccc
Q psy18018        203 NTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER-ILAIGQLIDSCEPTQIRHMMQLIEPQFQ  281 (635)
Q Consensus       203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (635)
                      +.|++||..+++++..+. |...|.++.++++.++.+. |+.|++||+.+. .... .                      
T Consensus        81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~-~----------------------  135 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRIT-D----------------------  135 (355)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSS-C----------------------
T ss_pred             cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeE-E----------------------
Confidence            999999999999999887 6779999999988877764 788999998764 1100 0                      


Q ss_pred             cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE--e
Q psy18018        282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS--G  359 (635)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~  359 (635)
                                                                               ... ...+.++++  .+++.  |
T Consensus       136 ---------------------------------------------------------~~~-~~~~~~~s~--~~la~~sg  155 (355)
T 3vu4_A          136 ---------------------------------------------------------DIR-FGGVCEFSN--GLLVYSNE  155 (355)
T ss_dssp             ---------------------------------------------------------CEE-EEEEEEEET--TEEEEEES
T ss_pred             ---------------------------------------------------------ecc-CCceEEEEc--cEEEEeCC
Confidence                                                                     000 112234555  45555  6


Q ss_pred             cCCCeEEEEEccCCc----------------eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        360 SLDTSIRVWEAESGN----------------LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~----------------~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      +.+|.|++||+.++.                .+..+.+|...|.+++|+                               
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-------------------------------  204 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-------------------------------  204 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-------------------------------
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-------------------------------
Confidence            889999999998765                267788899999988876                               


Q ss_pred             eCCcEEEEEeCCCc-EEEEeCCCCceeeeec-c-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeE--Eec---
Q psy18018        424 FDGVHVVSGSLDTS-IRVWEAESGNLRHTLM-G-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQ--TLS---  493 (635)
Q Consensus       424 ~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~---  493 (635)
                      |++++|++++.|++ |++||+.+++.+..+. + |...|.+++|+  +++|++++.|++|++||+..+....  .+.   
T Consensus       205 ~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          205 RKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             TTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            67778888888887 8899999999999888 5 99999999985  6799999999999999997653211  110   


Q ss_pred             ---------------CCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        494 ---------------GRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE  530 (635)
Q Consensus       494 ---------------~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~  530 (635)
                                     ...........++|  +++++++++.||.+++|++..++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence                           00111122345666  68899999999999999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=250.34  Aligned_cols=325  Identities=16%  Similarity=0.193  Sum_probs=202.2

Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc-----------ceeeccccc------------e-eEEeeeccCC
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE-----------CLHAELQET------------E-VELSHGYALR  193 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~-~~~~~~~~~~  193 (635)
                      .|.+.|++++|  ++++||+|+.||.|++||+.+++           ....+..+.            . +....+.+.+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            46889999999  89999999999999999999876           344555553            3 3333444444


Q ss_pred             --CEEEEEeCCCcEEEEECCCCeEEEEE---eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccc
Q psy18018        194 --SRIVSGSDDNTLKVWSATTGKCLRTL---IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ  268 (635)
Q Consensus       194 --~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  268 (635)
                        ..+++++.|+.|++||+.+++.....   ..+.+.+....          .-..+.+-.                   
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~~~-------------------  156 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPT----------TVTTLRVPV-------------------  156 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CC----------CCCSCCCCE-------------------
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcc----------cccceEecc-------------------
Confidence              68999999999999998765543221   11111111000          000000000                   


Q ss_pred             eeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEE
Q psy18018        269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG  348 (635)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (635)
                      .. ..                 +   ......                               ........+......++
T Consensus       157 ~~-~~-----------------~---~~~~~~-------------------------------~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          157 FR-PM-----------------D---LMVEAS-------------------------------PRRIFANAHTYHINSIS  184 (447)
T ss_dssp             EE-EE-----------------E---EEEEEE-------------------------------EEEEECSCCSSCCCEEE
T ss_pred             cc-ch-----------------h---eeeecc-------------------------------ceEEeccCCCcceEEEE
Confidence            00 00                 0   000000                               00000112334566788


Q ss_pred             EEecCcEEEEecCCCeEEEEEccC-CceEE-------eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAES-GNLRH-------TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~-------~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      |+|++++|++| .|+.|++||+.+ ++...       .+.+|...|.+++|+                            
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------------------  235 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH----------------------------  235 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC----------------------------
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC----------------------------
Confidence            99999999999 799999999984 33443       256788889999886                            


Q ss_pred             EEeeCC-cEEEEEeCCCcEEEEeCCCCce----eeeeccCC------------ccEEEEEec--CCEEEEEeCCCcEEEE
Q psy18018        421 ICLFDG-VHVVSGSLDTSIRVWEAESGNL----RHTLMGHQ------------SLTSGMELR--NNILVSGNADSTVKVW  481 (635)
Q Consensus       421 ~~~~~~-~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~------------~~v~~~~~~--~~~l~s~~~dg~i~iw  481 (635)
                         |++ ++|++++.|+.|++||+++++.    ...+.+|.            ..|.+++++  +++|++++. +.|++|
T Consensus       236 ---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          236 ---PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW  311 (447)
T ss_dssp             ---SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred             ---CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence               233 3444444444444444444443    44555554            489999985  669999998 999999


Q ss_pred             ECCC-CceeEEecCCCcccc------------cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeecccee------
Q psy18018        482 DIVS-GQCLQTLSGRNKHQS------------AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI------  540 (635)
Q Consensus       482 d~~~-~~~~~~~~~~~~~~~------------~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------  540 (635)
                      |+.. ++++..+..+.....            .+..++|  ++++|++++.||.|++||+.+++.+........      
T Consensus       312 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  391 (447)
T 3dw8_B          312 DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTV  391 (447)
T ss_dssp             ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCB
T ss_pred             eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccc
Confidence            9997 888888876221111            1223555  789999999999999999999876532111000      


Q ss_pred             cC---------------ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        541 LN---------------PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       541 ~~---------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      ..               ......+...|.+++|+|++++||+++.++ +++|.-
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          392 LKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence            00               001123566789999999999999998876 888864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.1e-29  Score=245.73  Aligned_cols=280  Identities=15%  Similarity=0.180  Sum_probs=218.1

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCc---eEEeeeC-------------------------------------
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMG-------------------------------------  381 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~-------------------------------------  381 (635)
                      +...+++|+++|++++++ .++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            566788899999966655 57899999999998   6555543                                     


Q ss_pred             -----------------CCcceeEEEEe--CCEE-EEEeCCCcEEEEEcc--CCcceeEE-----------EEEeeCCcE
Q psy18018        382 -----------------HQSLTSGMELR--NNIL-VSGNADSTVKVWDIV--SGTKKLMF-----------RICLFDGVH  428 (635)
Q Consensus       382 -----------------~~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~--~~~~~~~~-----------~~~~~~~~~  428 (635)
                                       |...|.+++|+  +.+| ++++.||.|++||+.  +++....+           ..++|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                             33369999997  5565 899999999999998  66544433           237889999


Q ss_pred             EEEEeCCCcEEEEeCCCCceee----eeccCCccEEEEEecC-----CEEEEEeCCCcEEEEECCCCceeEE-ecCCCcc
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRN-----NILVSGNADSTVKVWDIVSGQCLQT-LSGRNKH  498 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~  498 (635)
                      |++++.++.+++|++.+++...    .+.+|...|.++.+++     ++|++++.|+.|++||+.+++.+.. +.+   |
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---h  240 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG---H  240 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC---C
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC---C
Confidence            9999999999999998877554    7888999999998854     4999999999999999999988877 434   8


Q ss_pred             cccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCcee--------------EEeccCceecccccCCCe
Q psy18018        499 QSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY--------------FLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       499 ~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~~~~  563 (635)
                      ...|.+++| ++++|++++.|+.|++||+.+++.+..+.......+..              .......|.+++|+|+++
T Consensus       241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             SSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             CCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            889999999 69999999999999999999998877665321111100              012345789999999999


Q ss_pred             EEEEec-CCCeEEEEeC--CCC---ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC----eeEeEEEEEeee
Q psy18018        564 FVITSS-DDGTVKLWDV--KTG---EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG----TEETKLLVLDFD  631 (635)
Q Consensus       564 ~l~~~~-~d~~v~iwd~--~~~---~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg----~~~~~l~~~d~~  631 (635)
                      +|++++ .|+.|+|||+  .++   +.+..+     ..+ +.|.+++|+|++.++++++.+.    .-.+.+|.++.+
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-----~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQII-----TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEE-----ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEe-----ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            999998 8999999999  666   555555     234 7899999999766666665431    122678877754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.8e-27  Score=228.87  Aligned_cols=339  Identities=16%  Similarity=0.121  Sum_probs=237.3

Q ss_pred             EEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEE-EEEeCCCeEEEEeCCCccceeeccccceeEEeee
Q psy18018        113 CLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLV-VSGAYDYMVKIWNPDTEECLHAELQETEVELSHG  189 (635)
Q Consensus       113 ~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  189 (635)
                      .++++++.|+.|++||+++++.+..+.+|.. +.+++|  +++++ ++++.|++|++||+.+++.+..+..+..+.....
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~   81 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV   81 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence            4567777777788888888888888887764 799999  78876 6777999999999999998888777776666666


Q ss_pred             ccCCCEEEEE-eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccc
Q psy18018        190 YALRSRIVSG-SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ  268 (635)
Q Consensus       190 ~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  268 (635)
                      .+++.+++++ ..++.|++||+.+++.+..+..|. .+.+                                        
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~----------------------------------------  120 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLG----------------------------------------  120 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEE----------------------------------------
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-Ccce----------------------------------------
Confidence            6677777554 467999999999988877665432 2232                                        


Q ss_pred             eeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEE
Q psy18018        269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG  348 (635)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (635)
                                                                                                    ++
T Consensus       121 ------------------------------------------------------------------------------~~  122 (391)
T 1l0q_A          121 ------------------------------------------------------------------------------LA  122 (391)
T ss_dssp             ------------------------------------------------------------------------------EE
T ss_pred             ------------------------------------------------------------------------------EE
Confidence                                                                                          33


Q ss_pred             EEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018        349 FQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV  427 (635)
Q Consensus       349 ~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  427 (635)
                      ++|+++.+ ++++.++.|++||+.+++.+..+..+. .+.+++++                               |+++
T Consensus       123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~-------------------------------~dg~  170 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVT-------------------------------PDGT  170 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEEC-------------------------------TTSS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEEC-------------------------------CCCC
Confidence            77777766 677778899999998888777776553 33555544                               4555


Q ss_pred             EE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe---CCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        428 HV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN---ADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       428 ~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      ++ ++++.++.|++||+.+++....+. +...+.++.+  +++++++++   .++.|++||+.+++.+..+..   +. .
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~-~  245 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GP-D  245 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CS-S
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CC-C
Confidence            55 455667778888888777766665 3456677777  466788777   689999999999998888875   33 4


Q ss_pred             EEEEEe--cCCEE-EEEeCCCcEEEEECCCCceeeeeccceecCc----eeEEeccCceecccccCCC----------eE
Q psy18018        502 VTCLQF--NSRFV-ITSSDDGTVKLWDVKTGEFSTPLMSSFILNP----FYFLIYSQPLLCPHLQFNS----------RF  564 (635)
Q Consensus       502 v~~~~~--~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~----------~~  564 (635)
                      +.++++  +++++ ++++.|+.|++||+.+++....+..+.....    ..............|+.+.          ..
T Consensus       246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~  325 (391)
T 1l0q_A          246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ  325 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred             ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence            677887  57766 6778899999999999988777654321110    0000001111222333322          45


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc---cCCC
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG---SRNG  619 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~---~~dg  619 (635)
                      +...+.|...++||+.+|....         +..+  ...|+++|.|.+..   +.+|
T Consensus       326 ~~~~~~~~~~~~W~~~~g~~~~---------~~~~--~~~~~~~g~y~~~~~~~~~~g  372 (391)
T 1l0q_A          326 FTDLSKDATEWKWDFGDGSSSK---------KQNP--THTYSETGIYTVRLTVSNSNG  372 (391)
T ss_dssp             EEECCBSCSEEEEECSSSCEEC---------SSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred             EEeCCCCceEEEEECCCCcccC---------cCCC--eEEeCCCceEEEEEEEECCCC
Confidence            6667778999999999887421         1122  35799999977654   3666

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2e-29  Score=244.97  Aligned_cols=252  Identities=12%  Similarity=0.117  Sum_probs=177.3

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceE-----EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLR-----HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      ...+++++.++++++.|++|++||..+++..     ..+.+|...|.+++|++..-    .+                  
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~----~~------------------  151 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYS----AD------------------  151 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEEC----TT------------------
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccc----cc------------------
Confidence            3456778899999999999999999987653     34678999999999974110    00                  


Q ss_pred             EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecC---
Q psy18018        421 ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSG---  494 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~---  494 (635)
                       ...++++|++++.|++|++||+.++.....+.+|...+.+++|++   ++|++++.|++|++||+.+++.......   
T Consensus       152 -~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          152 -NRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             -CSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             -cCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence             013667888889999999999988888888888999999999964   3799999999999999988765433221   


Q ss_pred             -------------------CCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceec-------Ccee
Q psy18018        495 -------------------RNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL-------NPFY  545 (635)
Q Consensus       495 -------------------~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~  545 (635)
                                         ...|...+.++.|   +++.+++++.|+++++||+.+++....+..+...       ....
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                               1235667777877   6899999999999999999987765554332111       0111


Q ss_pred             EEeccCceecccccC--CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEe
Q psy18018        546 FLIYSQPLLCPHLQF--NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEET  623 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~  623 (635)
                      ............++|  ++.++++|+.||+|++||+.+++.+..+     ..|..+|.+|+|+|||++||+++++|.+.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~V~svafspdG~~LA~as~~Gv~lv  385 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMPIVDFCWHQDGSHLAIATEGSVLLT  385 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSCEEEEEECTTSSEEEEEESSEEEEE
T ss_pred             cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            111222233344444  5567888999999999999999988776     357789999999999999999999996444


Q ss_pred             EE
Q psy18018        624 KL  625 (635)
Q Consensus       624 ~l  625 (635)
                      +|
T Consensus       386 rL  387 (393)
T 4gq1_A          386 RL  387 (393)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-28  Score=234.75  Aligned_cols=269  Identities=12%  Similarity=0.064  Sum_probs=200.7

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018        190 YALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI  269 (635)
Q Consensus       190 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  269 (635)
                      +.++.++++|+.||.|++||+.+++.+..+.  ...|.++.+... +++++.|+++++|+..                  
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~------------------  103 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPG------------------  103 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETT------------------
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEcc------------------
Confidence            3456789999999999999999998888776  456666666666 8899999999999742                  


Q ss_pred             eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018        270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF  349 (635)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (635)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (343)
T 3lrv_A          104 --------------------------------------------------------------------------------  103 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       350 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                                   +.+.+|+..+++.+..+. +|...|.++++++.                             .++++
T Consensus       104 -------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------~~~~~  141 (343)
T 3lrv_A          104 -------------NQITILDSKTNKVLREIEVDSANEIIYMYGHNE-----------------------------VNTEY  141 (343)
T ss_dssp             -------------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC--------------------------------CCE
T ss_pred             -------------CceEEeecCCcceeEEeecCCCCCEEEEEcCCC-----------------------------CCCCE
Confidence                         246678888877665554 67778888887520                             05667


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee-EEecCCCcccccEEE
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL-QTLSGRNKHQSAVTC  504 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~  504 (635)
                      +++++.|+.|++||+++++....... |...+.++++  ++.++++|+.||.|++||+++++.+ ..+..  .|...|++
T Consensus       142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~  219 (343)
T 3lrv_A          142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKE  219 (343)
T ss_dssp             EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEE
T ss_pred             EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEE
Confidence            77777778888888877777665543 4557888887  4679999999999999999999877 56653  37889999


Q ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCce--ecccccCCCeEEEEecC-CCeEEEEeC
Q psy18018        505 LQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL--LCPHLQFNSRFVITSSD-DGTVKLWDV  579 (635)
Q Consensus       505 ~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-d~~v~iwd~  579 (635)
                      ++|  ++.+|++++ |+.|++||+++++....+....        .|...+  .+++|+|++++|++++. |+.++||++
T Consensus       220 l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          220 VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT--------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB--------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc--------cccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            999  688999999 4599999999987655443210        012223  46999999999999888 999999999


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCC---CCeEEEEccCCCee
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASE---TKLVCAVGSRNGTE  621 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~---d~~~l~~~~~dg~~  621 (635)
                      .+.......         .++..++|++   +++.|++++.||.+
T Consensus       291 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~  326 (343)
T 3lrv_A          291 DKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGI  326 (343)
T ss_dssp             CTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEE
T ss_pred             cccccceEe---------cCceeEecCccccccceeEEEecCCce
Confidence            766533222         4677888888   88888888888873

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.3e-27  Score=215.76  Aligned_cols=283  Identities=12%  Similarity=0.102  Sum_probs=186.2

Q ss_pred             EEECCCCcEEEEEeeCCCcEEEEeCCCC---eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc
Q psy18018        105 VWSATTGKCLLVSGSRDATLRVWHIESG---ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL  179 (635)
Q Consensus       105 vWd~~~~~~ll~~~~~dg~i~vwd~~~~---~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  179 (635)
                      -|.....+..-+.......|++|+..++   ++++++..|+.+|..+.|  |-..|+.....      ++          
T Consensus        46 ~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~----------  109 (356)
T 2w18_A           46 FWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------NL----------  109 (356)
T ss_dssp             EEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------SS----------
T ss_pred             eeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------cc----------
Confidence            4555555555555555666777776666   889999999999999999  33333322210      01          


Q ss_pred             ccceeEEeeeccC----CCEEEEEeCCCcEEEEECCCCeEEEE-EeCCCCCeEEEEeeCCEEEEeeCceeEEEecccc-e
Q psy18018        180 QETEVELSHGYAL----RSRIVSGSDDNTLKVWSATTGKCLRT-LIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAE-R  253 (635)
Q Consensus       180 ~~~~~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~-~  253 (635)
                      ....+....+.++    +..+++++.+  +.+|++.+++.+.+ ..+|.+                   .|++|++.. +
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~-------------------~V~~~~~s~dG  168 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ-------------------QVEVMTFAEDG  168 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC-------------------EEEEEEECTTS
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC-------------------cEEEEEECCCC
Confidence            1122333444444    5567776644  88899888877766 345554                   445554422 1


Q ss_pred             eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018        254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA  333 (635)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (635)
                      ....                                                                            
T Consensus       169 ~~~~----------------------------------------------------------------------------  172 (356)
T 2w18_A          169 GGKE----------------------------------------------------------------------------  172 (356)
T ss_dssp             CEEE----------------------------------------------------------------------------
T ss_pred             ceee----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             hhccccccCCCceEEEEe---cCcEEEEecCCCeEEEEEccCCceEEeeeCCCc---ceeEEEEe--CCEEEEEeCCCcE
Q psy18018        334 TLHRNKKTHVPDLFGFQF---DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGNADSTV  405 (635)
Q Consensus       334 ~~~~~~~~~~~~~~~~s~---~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~v~~l~~~--~~~l~s~~~dg~i  405 (635)
                        ....+.....+++|+|   ++..|++++.|++|++||+.++++++++.+|..   .+.+++|+  +.++++++.+.. 
T Consensus       173 --s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-  249 (356)
T 2w18_A          173 --NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-  249 (356)
T ss_dssp             --EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             --eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-
Confidence              0012334556678888   779999999999999999999999999987644   56666776  446666654432 


Q ss_pred             EEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-----ccCCccEEEEEecCCEEEEEeCCCcEEE
Q psy18018        406 KVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-----MGHQSLTSGMELRNNILVSGNADSTVKV  480 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~s~~~dg~i~i  480 (635)
                       +|                   .+++|+.|+++++||..+++.+..+     .+|.....+..+++.++++++.|++|+|
T Consensus       250 -~w-------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkI  309 (356)
T 2w18_A          250 -KE-------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAI  309 (356)
T ss_dssp             ----------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEE
T ss_pred             -cc-------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEE
Confidence             23                   3678899999999999999887765     4677666666777889999999999999


Q ss_pred             EECCCCceeEEecCCCcccccE-EEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAV-TCLQF--NSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v-~~~~~--~~~~l~~~~~d~~i~vwd~  526 (635)
                      ||+.+++++..+.+   |...+ .+++|  |+++|++|+.|++|+|||+
T Consensus       310 WDl~tGk~l~tL~g---H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          310 WDLLLGQCTALLPP---VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTTCSEEEEECC---C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EECCCCcEEEEecC---CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999987   65543 34677  7899999999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.4e-28  Score=230.86  Aligned_cols=185  Identities=11%  Similarity=0.006  Sum_probs=136.1

Q ss_pred             EEe--cCcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        349 FQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       349 ~s~--~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                      ++|  +++++++++.||.|++||+.+++....... |...+.+++|+                               |+
T Consensus       133 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-------------------------------pd  181 (343)
T 3lrv_A          133 GHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-------------------------------KD  181 (343)
T ss_dssp             CCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-------------------------------TT
T ss_pred             cCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-------------------------------CC
Confidence            555  667788888888888888887777655533 44467777765                               66


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCcee-eeecc-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        426 GVHVVSGSLDTSIRVWEAESGNLR-HTLMG-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       426 ~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      +.++++|+.|+.|++||+++++.. ..+.. |...|.+++|+  +.+|++++ |+.|++||+++++....+.....+...
T Consensus       182 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~  260 (343)
T 3lrv_A          182 SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFK  260 (343)
T ss_dssp             SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccc
Confidence            777888888888888888888877 77887 99999999985  56999999 459999999998776655542223333


Q ss_pred             E--EEEEe--cCCEEEEEeC-CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC---CCeEEEEecCCCe
Q psy18018        502 V--TCLQF--NSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF---NSRFVITSSDDGT  573 (635)
Q Consensus       502 v--~~~~~--~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~  573 (635)
                      +  .+++|  ++++|++++. |+.+++|++.+.......               .++..++|+|   +.+.+++++.|+.
T Consensus       261 ~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~d~~  325 (343)
T 3lrv_A          261 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---------------DEESALCLQSDTADFTDMDVVCGDGG  325 (343)
T ss_dssp             -CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---------------EEEEECCC----CCCCEEEEEEETTE
T ss_pred             ccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---------------cCceeEecCccccccceeEEEecCCc
Confidence            3  35777  6899999998 999999999765422111               3567788888   8899999999999


Q ss_pred             EEEEeCC
Q psy18018        574 VKLWDVK  580 (635)
Q Consensus       574 v~iwd~~  580 (635)
                      +.++-..
T Consensus       326 ~~~~~~~  332 (343)
T 3lrv_A          326 IAAILKT  332 (343)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9988644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=5.5e-27  Score=232.47  Aligned_cols=225  Identities=11%  Similarity=0.064  Sum_probs=174.1

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      +++++..+++++.++.|++||+.+++.+..+..|...+.+++++                               |++++
T Consensus       177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~  225 (433)
T 3bws_A          177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD-------------------------------PIRDL  225 (433)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE-------------------------------TTTTE
T ss_pred             EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc-------------------------------CCCCE
Confidence            66677788888888999999998888888888888888888876                               34444


Q ss_pred             EE-EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe--------CCCcEEEEECCCCceeEEecCCCc
Q psy18018        429 VV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN--------ADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       429 l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      ++ +++.++.|++||+.+++....+..+. .+.++.+  +++.+++++        .|+.|++||+.+++.+..+.    
T Consensus       226 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----  300 (433)
T 3bws_A          226 VYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----  300 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----
T ss_pred             EEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----
Confidence            43 33356777778877777777666543 4677777  466888887        58899999999988777764    


Q ss_pred             ccccEEEEEe--cCC-EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC----
Q psy18018        498 HQSAVTCLQF--NSR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD----  570 (635)
Q Consensus       498 ~~~~v~~~~~--~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----  570 (635)
                      +...+.+++|  +++ ++++++.|+.|++||+.+++....+.            +...+.+++|+|++++|++++.    
T Consensus       301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~~  368 (433)
T 3bws_A          301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP------------VFDKPNTIALSPDGKYLYVSCRGPNH  368 (433)
T ss_dssp             EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE------------CSSSEEEEEECTTSSEEEEEECCCCC
T ss_pred             CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec------------CCCCCCeEEEcCCCCEEEEEecCCCc
Confidence            5567888888  465 55677899999999999887655442            4567889999999999888876    


Q ss_pred             -----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC-CCeeEeEEEEEeee
Q psy18018        571 -----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR-NGTEETKLLVLDFD  631 (635)
Q Consensus       571 -----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~-dg~~~~~l~~~d~~  631 (635)
                                 ||.|++||+.+++.+..+.     . ...+.+++|+|||++|++++. |+.    +.+||++
T Consensus       369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-----~-~~~~~~~~~s~dg~~l~~~~~~d~~----i~v~~~~  431 (433)
T 3bws_A          369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-----A-GNQPTGLDVSPDNRYLVISDFLDHQ----IRVYRRD  431 (433)
T ss_dssp             TTTCTTSCCSSCCEEEEEETTTTEEEEEEE-----C-SSSEEEEEECTTSCEEEEEETTTTE----EEEEEET
T ss_pred             cccccccccccceEEEEEECCCCcEEEEec-----C-CCCCceEEEcCCCCEEEEEECCCCe----EEEEEec
Confidence                       5799999999999888773     2 456899999999999988765 887    4444443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.6e-26  Score=225.76  Aligned_cols=269  Identities=13%  Similarity=0.147  Sum_probs=205.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEE-EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI-VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM  231 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  231 (635)
                      ..+++++.|+.|++||+.+++.+..+..+..+......+++.++ ++++.|+.|++||+.+++.+..+..+. .+.+++ 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~-   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA-   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE-
Confidence            46888999999999999999988887777666666666667766 566689999999999999888776543 444443 


Q ss_pred             eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccc
Q psy18018        232 AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT  311 (635)
Q Consensus       232 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (635)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (391)
T 1l0q_A           81 --------------------------------------------------------------------------------   80 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                           ++|++++++ ++..++.|++||+.+++.+..+..+. .+.+++
T Consensus        81 -------------------------------------~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~  122 (391)
T 1l0q_A           81 -------------------------------------VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLA  122 (391)
T ss_dssp             -------------------------------------ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             -------------------------------------ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEE
Confidence                                                 677777664 44566889999988887777666543 455555


Q ss_pred             EeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CC
Q psy18018        391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN  467 (635)
Q Consensus       391 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~  467 (635)
                      |+                               |+++++ ++++.++.|++||+.+++....+..+.. +.++.++  ++
T Consensus       123 ~s-------------------------------~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~  170 (391)
T 1l0q_A          123 LS-------------------------------PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGT  170 (391)
T ss_dssp             EC-------------------------------TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSS
T ss_pred             EC-------------------------------CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-cceEEECCCCC
Confidence            54                               455555 4556677888888888877777766543 4667664  55


Q ss_pred             EE-EEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEe---CCCcEEEEECCCCceeeeeccceec
Q psy18018        468 IL-VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS---DDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       468 ~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      .+ ++++.|+.|++||+.+++....+.    +...+.++++  +++++++++   .++.|++||+++++.+..+..    
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~----  242 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV----  242 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC----
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec----
Confidence            65 677889999999999998887776    4456788888  588888887   689999999999876655543    


Q ss_pred             CceeEEeccCceecccccCCCeEE-EEecCCCeEEEEeCCCCceEEeee
Q psy18018        542 NPFYFLIYSQPLLCPHLQFNSRFV-ITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                              ...+.+++|+|++++| ++++.|+.|++||+.+++.+..+.
T Consensus       243 --------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          243 --------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             --------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             --------CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence                    2357889999999877 677899999999999999988774

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.8e-28  Score=219.16  Aligned_cols=255  Identities=15%  Similarity=0.148  Sum_probs=172.9

Q ss_pred             EEEEecCCCeEEEEEccCC---ceEEeeeCCCcceeEEEEeCC------------------EEEEEeCCCcEEEEEccCC
Q psy18018        355 HVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLTSGMELRNN------------------ILVSGNADSTVKVWDIVSG  413 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~~v~~l~~~~~------------------~l~s~~~dg~i~iwd~~~~  413 (635)
                      .++++++ ..|++|+..++   +.++++..|+.+|..+.+.++                  .|+.+..|+.+..+.+..+
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            4566664 58999999998   788999999988888877541                  2223333333333333333


Q ss_pred             cceeEEEEEeeCCcEEEEEe--CCCcEEEEeC-CCCceeeeeccCCccEEE--EEe---cCCEEEEEeCCCcEEEEECCC
Q psy18018        414 TKKLMFRICLFDGVHVVSGS--LDTSIRVWEA-ESGNLRHTLMGHQSLTSG--MEL---RNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~-~~~~~~~~~~~~~~~v~~--~~~---~~~~l~s~~~dg~i~iwd~~~  485 (635)
                      +......  .++++.+.++.  .|+.|++|++ .+++.+..+.+|...+..  +++   ++.+|++++.|++|+|||+++
T Consensus       135 ~~~~v~~--l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          135 NIKAVLG--LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             EEEEEEE--ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred             CeEEEEe--cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence            2222222  14555555533  5999999999 458888888888776555  444   457999999999999999999


Q ss_pred             CceeEEecCCCcccccEEEEEe--cCCEE------------EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccC
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQF--NSRFV------------ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ  551 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l------------~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (635)
                      +++++.+.++..+...+.+++|  ++.++            ++|+.|++|++||..+++.+..+....+.      .|..
T Consensus       213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~------Gh~~  286 (356)
T 2w18_A          213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP------GQAG  286 (356)
T ss_dssp             CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT------TCCC
T ss_pred             CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC------CCcc
Confidence            9999999863333446666666  67665            67889999999999999876544211000      1222


Q ss_pred             ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEE-EEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVW-RIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      .+.  ..+.++.++|+++.|++|+|||+.+++++.++     .+|...+. .++|||||++|++|+.|++  +|||.
T Consensus       287 ~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-----~gH~~~vvs~vafSPDG~~LaSGS~D~T--IklWd  354 (356)
T 2w18_A          287 RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQKDGN--IFVYH  354 (356)
T ss_dssp             CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEE-----CCC--CCCCEEEECSSSSEEEEECTTSC--EEEEE
T ss_pred             eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-----cCCCCCeEEEEEECCCCCEEEEEECCCc--EEEec
Confidence            222  22334778999999999999999999999998     46665544 6899999999999999999  56664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=259.89  Aligned_cols=260  Identities=18%  Similarity=0.244  Sum_probs=191.6

Q ss_pred             CceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018         73 PKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY  150 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~  150 (635)
                      +..+.+|.+.| ++++|+  +++|++|+.||+|++||+.++                   +++.+..+.+|.++|++++|
T Consensus         2 ~~~l~gH~~~V-~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------~~~~~~~l~~h~~~V~~l~~   61 (753)
T 3jro_A            2 VVIANAHNELI-HDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDW   61 (753)
T ss_dssp             ------CCCCE-EEECCCSSSCCEEEEETTTEEEEEEEETT-------------------EEEEEEEECCCSSCEEEEEE
T ss_pred             eeecccCccee-EEEEECCCCCeEEEEECCCcEEEEecCCC-------------------CCccceeccCCcCceEEEEe
Confidence            35688999988 999999  899999999999999997633                   24667788999999999999


Q ss_pred             --c--CCEEEEEeCCCeEEEEeCCCcc--ceeeccccceeEEee-eccC--CCEEEEEeCCCcEEEEECCCC--eEEEEE
Q psy18018        151 --D--GKLVVSGAYDYMVKIWNPDTEE--CLHAELQETEVELSH-GYAL--RSRIVSGSDDNTLKVWSATTG--KCLRTL  219 (635)
Q Consensus       151 --~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~dg~i~vwd~~~~--~~~~~~  219 (635)
                        +  +++|++++.||+|++||+.+++  .......+...+... ..+.  +..+++++.||.|++||+.++  .....+
T Consensus        62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~  141 (753)
T 3jro_A           62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII  141 (753)
T ss_dssp             CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe
Confidence              4  8999999999999999999886  555555554444444 4455  789999999999999999876  344567


Q ss_pred             eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      .+|...|.++.|++..+...+                                                           
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~-----------------------------------------------------------  162 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDG-----------------------------------------------------------  162 (753)
T ss_dssp             ECCSSCEEEEEECCCC----------------------------------------------------------------
T ss_pred             ecCCCceEEEEecCccccccc-----------------------------------------------------------
Confidence            789999998887543111000                                                           


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC----ce
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG----NL  375 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~  375 (635)
                                                                    .....+++.++++|+.||.|++||+.++    ..
T Consensus       163 ----------------------------------------------~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          163 ----------------------------------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             --------------------------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             ----------------------------------------------ccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence                                                          0002446788999999999999999876    45


Q ss_pred             EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC---CcEEEEEeCCCcEEEEeCCCCc-----
Q psy18018        376 RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD---GVHVVSGSLDTSIRVWEAESGN-----  447 (635)
Q Consensus       376 ~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~-----  447 (635)
                      ...+.+|...|.+++|+                               |+   +.++++++.||.|++||+.+++     
T Consensus       197 ~~~~~~h~~~V~~l~~s-------------------------------p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~  245 (753)
T 3jro_A          197 ESTLEGHSDWVRDVAWS-------------------------------PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK  245 (753)
T ss_dssp             EEEECCCSSCEEEEEEC-------------------------------CCCSSSEEEEEEESSSCEEEEEESSSSSCCBC
T ss_pred             eeeecCCCCcEEEEEec-------------------------------cCCCCCCEEEEEecCCEEEEecCCCCCCccee
Confidence            66788899999999987                               23   4455555555556666655542     


Q ss_pred             eeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce
Q psy18018        448 LRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC  488 (635)
Q Consensus       448 ~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~  488 (635)
                      .......|...+.++++  +++++++++.||.|++|++..+..
T Consensus       246 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            23334557888888887  567999999999999999986543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4e-26  Score=226.23  Aligned_cols=297  Identities=13%  Similarity=0.106  Sum_probs=214.7

Q ss_pred             EeeCCCc--EEEEeCCCC--eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee-----ccccceeE
Q psy18018        117 SGSRDAT--LRVWHIESG--ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA-----ELQETEVE  185 (635)
Q Consensus       117 ~~~~dg~--i~vwd~~~~--~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~  185 (635)
                      +++.++.  |..+|.+++  +.+..+..+.. +.+++|  ++..+++++.|+.|++||+.+++....     ...+....
T Consensus        94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v  172 (433)
T 3bws_A           94 RKPEELNEKLIALDKEGITHRFISRFKTGFQ-PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFV  172 (433)
T ss_dssp             SSGGGGTTCEEECCBTTCSEEEEEEEECSSC-BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEE
T ss_pred             cccCCCceEEEEECCCCCcceEEEEEcCCCC-ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCce
Confidence            4555664  444444334  66666766544 458888  667788888899999999999887763     22333334


Q ss_pred             Eeeec-cCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecccccccc
Q psy18018        186 LSHGY-ALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSC  264 (635)
Q Consensus       186 ~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~  264 (635)
                      ....+ +.+..+++++.|+.|++||+.+++.+..+..|...+.+++                                  
T Consensus       173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~----------------------------------  218 (433)
T 3bws_A          173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILL----------------------------------  218 (433)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEE----------------------------------
T ss_pred             eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEE----------------------------------
Confidence            44444 4566788888999999999999998888887777766655                                  


Q ss_pred             CccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCC
Q psy18018        265 EPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP  344 (635)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (635)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (433)
T 3bws_A          219 --------------------------------------------------------------------------------  218 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        345 DLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       345 ~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                          ++|+++.++ +++.++.|++||+.+++.+..+..+. .+.+++++                               
T Consensus       219 ----~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~-------------------------------  262 (433)
T 3bws_A          219 ----YDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLS-------------------------------  262 (433)
T ss_dssp             ----EETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEEC-------------------------------
T ss_pred             ----EcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEc-------------------------------
Confidence                566666664 44467888888888777766665543 35666654                               


Q ss_pred             eCCcEEEEEe--------CCCcEEEEeCCCCceeeeeccCCccEEEEEec--CC-EEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        424 FDGVHVVSGS--------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       424 ~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                      |+++++++++        .|+.|++||+.+++....+ .|...+.++.++  ++ ++++++.|+.|++||+.+++....+
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~  341 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI  341 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence            3444444444        4778888888877766655 345567777774  44 5677789999999999999888877


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEEeC---------------CCcEEEEECCCCceeeeeccceecCceeEEeccCceec
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITSSD---------------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC  555 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~~~---------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  555 (635)
                      .    +...+.++++  +++++++++.               ||.|++||+.+++....+..            ...+.+
T Consensus       342 ~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------------~~~~~~  405 (433)
T 3bws_A          342 P----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------------GNQPTG  405 (433)
T ss_dssp             E----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------------SSSEEE
T ss_pred             c----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC------------CCCCce
Confidence            6    5566888888  5888888876               57999999999887665542            456889


Q ss_pred             ccccCCCeEEEEecC-CCeEEEEeCCC
Q psy18018        556 PHLQFNSRFVITSSD-DGTVKLWDVKT  581 (635)
Q Consensus       556 ~~~s~~~~~l~~~~~-d~~v~iwd~~~  581 (635)
                      ++|+||+++|++++. |+.|++|+++.
T Consensus       406 ~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          406 LDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            999999999988764 99999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.7e-28  Score=238.50  Aligned_cols=206  Identities=10%  Similarity=0.073  Sum_probs=134.4

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeC---CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH  428 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  428 (635)
                      |+++|++++.|++|++||+.++..+..+..|...+.+++|++   .+|++++.|+.|++||+.+++............  
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~--  232 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK--  232 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS--
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc--
Confidence            678899999999999999988888888889999999999983   479999999999999998876543322110000  


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE-
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC-  504 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-  504 (635)
                           .+ .+.-++...........+|...+.++.+   +++.+++++.|+++++||+..++....+..   +...+.. 
T Consensus       233 -----~~-~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~---~~~~~~~~  303 (393)
T 4gq1_A          233 -----NP-WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD---STMKLGPK  303 (393)
T ss_dssp             -----CC-CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------
T ss_pred             -----cc-eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee---ecCccccE
Confidence                 00 0111111111122234567788888776   577999999999999999987766555543   2222211 


Q ss_pred             ------------------EEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        505 ------------------LQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       505 ------------------~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                                        +.+   ++.++++|+.||.|++||+.+++......           .|..+|.+++|||||+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-----------~~~~~V~svafspdG~  372 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-----------QLGMPIVDFCWHQDGS  372 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-----------ECSSCEEEEEECTTSS
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-----------CCCCcEEEEEEcCCCC
Confidence                              122   34577888999999999999987655443           3678999999999999


Q ss_pred             EEEEecCCCeEEEEeCC
Q psy18018        564 FVITSSDDGTVKLWDVK  580 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~  580 (635)
                      +||+++++| +.+|.+.
T Consensus       373 ~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          373 HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEEESSE-EEEEEEG
T ss_pred             EEEEEeCCC-eEEEEEe
Confidence            999999776 6666654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2e-27  Score=232.71  Aligned_cols=283  Identities=18%  Similarity=0.206  Sum_probs=211.4

Q ss_pred             EEEEecCCCCCCCceee-cCCcchheeeccceeeeeeecCCC----CCCceeeccCcceEEEEEEc---CCEEEEeeCCC
Q psy18018         30 TCLQFSGKSFPCESFIR-SSSPWKALFMSHRSVEINWRTRPI----KDPKVLKGHDDHVITCLQFS---GSRIVSGSDDN  101 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la-~~~~~~~~~~~~~~~~~iwd~~~~----~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~  101 (635)
                      .+++++    |+...++ +++.        +..+.+|+....    +.+..+.+|.+.| ++++|+   +++||+|+.||
T Consensus        38 ~~~~~~----~~~~~~~~~~~~--------~g~i~v~~~~~~~~~~~~~~~~~~h~~~V-~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           38 GFCAVN----PKFMALICEASG--------GGAFLVLPLGKTGRVDKNVPLVCGHTAPV-LDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             CSEEEC----SSEEEEEBCCSS--------SCCEEEEETTCCEECCTTCCCBCCCSSCE-EEEEECTTCTTEEEEEETTS
T ss_pred             CcEEEC----CCeEEEEEEEcC--------CCEEEEEECccCCCCCCCCceEecCCCCE-EEEEeCCCCCCEEEEEeCCC
Confidence            567888    6555443 4444        444557998654    3566788999988 999997   78999999999


Q ss_pred             cEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cC-CEEEEEeCCCeEEEEeCCCccceeec
Q psy18018        102 TLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DG-KLVVSGAYDYMVKIWNPDTEECLHAE  178 (635)
Q Consensus       102 ~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~-~~l~s~~~dg~v~iwd~~~~~~~~~~  178 (635)
                      +|++||+.++...              ....+++..+.+|...|.+++|  ++ .+|++++.||+|++||+.+++.+..+
T Consensus       105 ~v~vw~~~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          105 TVMVWEIPDGGLV--------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             EEEEEECCTTCCS--------------SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eEEEEEccCCCCc--------------cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            9999998865311              0112567788899999999999  55 69999999999999999999988877


Q ss_pred             --cccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCCCCC-eEEEEee--CCEEEEe---eCceeEEEe
Q psy18018        179 --LQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL-IGHTGG-VWSSQMA--GNIIISG---STDRTLKGW  248 (635)
Q Consensus       179 --~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~-v~~~~~~--~~~l~s~---~~dg~i~~w  248 (635)
                        ..+.. +......+++..|++++.|+.|++||+++++.+..+ .+|.+. +..+.|.  +.+++++   +.|+.|++|
T Consensus       171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw  250 (402)
T 2aq5_A          171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW  250 (402)
T ss_dssp             CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred             ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence              44444 444455567789999999999999999999999998 788876 8888884  6788888   799999999


Q ss_pred             cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018        249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK  328 (635)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (635)
                      |+.........                                                                     
T Consensus       251 d~~~~~~~~~~---------------------------------------------------------------------  261 (402)
T 2aq5_A          251 DTKHLEEPLSL---------------------------------------------------------------------  261 (402)
T ss_dssp             ETTBCSSCSEE---------------------------------------------------------------------
T ss_pred             cCccccCCceE---------------------------------------------------------------------
Confidence            98764210000                                                                     


Q ss_pred             hhhhhhhccccccCCCceEEEEecCcEEE-EecCCCeEEEEEccCCce-EEeeeC--CCcceeEEEEeCCEEEEEeCCCc
Q psy18018        329 CLEAATLHRNKKTHVPDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNL-RHTLMG--HQSLTSGMELRNNILVSGNADST  404 (635)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~-~~~~~~--~~~~v~~l~~~~~~l~s~~~dg~  404 (635)
                             ...........++++|++++++ +|+.||.|++|++.+++. +..+..  |...+.+++|+++....++.++.
T Consensus       262 -------~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~  334 (402)
T 2aq5_A          262 -------QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEI  334 (402)
T ss_dssp             -------EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEE
T ss_pred             -------EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceeccee
Confidence                   0001122345567999999886 566799999999998874 444444  55899999998543333456778


Q ss_pred             EEEEEccCCcc
Q psy18018        405 VKVWDIVSGTK  415 (635)
Q Consensus       405 i~iwd~~~~~~  415 (635)
                      +++|++.++..
T Consensus       335 ~~~~~l~~~~~  345 (402)
T 2aq5_A          335 ARFYKLHERKC  345 (402)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEcCCCcE
Confidence            89998886543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.3e-28  Score=256.48  Aligned_cols=245  Identities=19%  Similarity=0.233  Sum_probs=188.8

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEcc--CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ...++|+|+++++++|+.||.|++|++.  ++..+..+.+|...|.+++|+++                           
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~---------------------------   64 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---------------------------   64 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCT---------------------------
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCC---------------------------
Confidence            3445577888888888888999999887  45677788999999999998621                           


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCc--eeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCce--eEEec
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQC--LQTLS  493 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~  493 (635)
                        .+++++++++.||.|++||+.+++  ....+.+|...|.++.++    ++++++++.||.|++||+.++..  ...+.
T Consensus        65 --~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           65 --KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             --TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred             --CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee
Confidence              114455666666666666666665  566778899999999985    67999999999999999987733  33444


Q ss_pred             CCCcccccEEEEEec---------------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        494 GRNKHQSAVTCLQFN---------------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       494 ~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      .   |...|.+++|+               +.++++++.||.|++||++++........       ....|...|++++|
T Consensus       143 ~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~~h~~~V~~l~~  212 (753)
T 3jro_A          143 A---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------TLEGHSDWVRDVAW  212 (753)
T ss_dssp             C---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE-------EECCCSSCEEEEEE
T ss_pred             c---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee-------eecCCCCcEEEEEe
Confidence            4   88899999994               57999999999999999988743222111       12247889999999


Q ss_pred             cCC---CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        559 QFN---SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       559 s~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +|+   +++|++++.||.|++||+.+++............+...|++++|+|+|++|++++.||.    |.+||++
T Consensus       213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~----I~vwd~~  284 (753)
T 3jro_A          213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK----VTLWKEN  284 (753)
T ss_dssp             CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC----EECCBCC
T ss_pred             ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE----EEEEecC
Confidence            999   99999999999999999998753222222222568889999999999999999999998    5555554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.9e-27  Score=232.69  Aligned_cols=195  Identities=16%  Similarity=0.211  Sum_probs=150.6

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEE----eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF  419 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  419 (635)
                      ...++|+|++.+|++|+.+|.|++|++.++....    .+.+|...|.+++|+                           
T Consensus       152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---------------------------  204 (450)
T 2vdu_B          152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI---------------------------  204 (450)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE---------------------------
T ss_pred             ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc---------------------------
Confidence            3456789999999999999999999988776544    677888888888876                           


Q ss_pred             EEEeeC---CcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018        420 RICLFD---GVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       420 ~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                          |+   +++|++++.|+.|++||+.+++.+.. +.+|...|.+++| ++++|++++.|+.|++||+.+++++..+..
T Consensus       205 ----p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  280 (450)
T 2vdu_B          205 ----KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDY  280 (450)
T ss_dssp             ----ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred             ----CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence                45   66777888888888888888877776 5689999999998 578999999999999999999998887763


Q ss_pred             CC----------------------cccccEEEEEe--cCCEEEEEe-CCCcEEEEEC--CCC---ceeeeeccceecCce
Q psy18018        495 RN----------------------KHQSAVTCLQF--NSRFVITSS-DDGTVKLWDV--KTG---EFSTPLMSSFILNPF  544 (635)
Q Consensus       495 ~~----------------------~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~--~~~---~~~~~~~~~~~~~~~  544 (635)
                      ..                      .....|.++++  +++++++++ .|+.|++|++  .++   +.+..+.        
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--------  352 (450)
T 2vdu_B          281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--------  352 (450)
T ss_dssp             HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--------
T ss_pred             hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--------
Confidence            11                      23456888888  588999998 8999999999  544   2222222        


Q ss_pred             eEEeccCceecccccCCCeEEEEecC------CCeEEEEeCCC
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSD------DGTVKLWDVKT  581 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~v~iwd~~~  581 (635)
                         .+ ..|.+++|+|++.++++++.      +..|.+|.+..
T Consensus       353 ---~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          353 ---FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             ---CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ---cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence               13 68999999996555554443      45588887643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=6e-27  Score=230.81  Aligned_cols=243  Identities=19%  Similarity=0.323  Sum_probs=191.6

Q ss_pred             ccCCCceEEEEec-CcEEEEecCCCeEEEEEccC----------CceEEeeeCCCcceeEEEEeC--C-EEEEEeCCCcE
Q psy18018        340 KTHVPDLFGFQFD-GVHVVSGSLDTSIRVWEAES----------GNLRHTLMGHQSLTSGMELRN--N-ILVSGNADSTV  405 (635)
Q Consensus       340 ~~~~~~~~~~s~~-~~~l~~~~~dg~i~v~~~~~----------~~~~~~~~~~~~~v~~l~~~~--~-~l~s~~~dg~i  405 (635)
                      +...+..++++|+ +.++++++.+|.|++|++.+          ...+..+.+|...+.+++|++  . +|++++.||.|
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred             CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence            4456777889996 78999999999999999986          567788899999999999973  3 67777777777


Q ss_pred             EEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEE
Q psy18018        406 KVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWD  482 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd  482 (635)
                      ++|++..+....                  . .       ......+.+|...|.++.++   +.++++++.||.|++||
T Consensus       207 ~vwd~~~~~~~~------------------~-~-------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          207 CLWDINATPKEH------------------R-V-------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             EEEETTSCCBGG------------------G-E-------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             EEEeCCCCCCCC------------------c-e-------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            777765421100                  0 0       01244567899999999985   45999999999999999


Q ss_pred             CCCC---ceeEEecCCCcccccEEEEEec--CC-EEEEEeCCCcEEEEECCCCc-eeeeeccceecCceeEEeccCceec
Q psy18018        483 IVSG---QCLQTLSGRNKHQSAVTCLQFN--SR-FVITSSDDGTVKLWDVKTGE-FSTPLMSSFILNPFYFLIYSQPLLC  555 (635)
Q Consensus       483 ~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~  555 (635)
                      ++++   +.+..+..   |...|.+++|+  ++ ++++|+.||.|++||+++.. .+..+.           .|...|++
T Consensus       261 ~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-----------~h~~~v~~  326 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-----------SHKDEIFQ  326 (430)
T ss_dssp             TTCSCSSSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-----------CCSSCEEE
T ss_pred             CCCCCCCcceeEeec---CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-----------cCCCCEEE
Confidence            9987   46666655   88999999994  44 79999999999999999743 333332           37889999


Q ss_pred             ccccCCCe-EEEEecCCCeEEEEeCCC--------------CceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCC
Q psy18018        556 PHLQFNSR-FVITSSDDGTVKLWDVKT--------------GEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNG  619 (635)
Q Consensus       556 ~~~s~~~~-~l~~~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg  619 (635)
                      ++|+|+++ +|++++.|+.|+|||+..              .+.+..+     .+|...|.+++|+|+++ +|++++.||
T Consensus       327 i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEECCC
Confidence            99999995 799999999999999987              2455555     57889999999999999 999999999


Q ss_pred             eeEeEEEEEe
Q psy18018        620 TEETKLLVLD  629 (635)
Q Consensus       620 ~~~~~l~~~d  629 (635)
                      .  +++|.++
T Consensus       402 ~--i~iw~~~  409 (430)
T 2xyi_A          402 I--MQVWQMA  409 (430)
T ss_dssp             E--EEEEEEC
T ss_pred             C--EEEeEcc
Confidence            8  5555543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=8.5e-25  Score=219.69  Aligned_cols=314  Identities=9%  Similarity=0.032  Sum_probs=236.8

Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEEC--CCCeEEEEEeCCCCCeEE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSA--TTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~  228 (635)
                      ++..+++++.|++|.+||..+++.+..+............+++.+|++++.|+.|.+||+  .+++.+.++..+ ..+..
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~  226 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARS  226 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEE
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcce
Confidence            788899999999999999999998888774444555556677889999999999999999  778777766532 12222


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (543)
T 1nir_A          227 --------------------------------------------------------------------------------  226 (543)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe----cCcEEEEecC-CCeEEEEEccCCceEEeeeCC-
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF----DGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH-  382 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~-  382 (635)
                                                            ++|+|    +|+++++++. ++.|.+||..+++++..+..+ 
T Consensus       227 --------------------------------------va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g  268 (543)
T 1nir_A          227 --------------------------------------VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  268 (543)
T ss_dssp             --------------------------------------EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             --------------------------------------EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC
Confidence                                                  34788    8888888874 789999999988888777652 


Q ss_pred             ---------C-cceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEE----------EEEeeCCcEEEEEe-CCCcE
Q psy18018        383 ---------Q-SLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMF----------RICLFDGVHVVSGS-LDTSI  438 (635)
Q Consensus       383 ---------~-~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~l~~~~-~d~~i  438 (635)
                               . ..+.++.++   +.++++...++.|.+||+.+.+.....          ..++|+++++++++ .+++|
T Consensus       269 ~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v  348 (543)
T 1nir_A          269 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKV  348 (543)
T ss_dssp             ECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred             cccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeE
Confidence                     2 267888887   346777888999999999876543311          24789999877665 58899


Q ss_pred             EEEeCCCCceeeeecc----CCccEEEEE-ec-CCEEEEEe-CCCcEEEEECCC-------CceeEEecCCCcccccEEE
Q psy18018        439 RVWEAESGNLRHTLMG----HQSLTSGME-LR-NNILVSGN-ADSTVKVWDIVS-------GQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       439 ~~~d~~~~~~~~~~~~----~~~~v~~~~-~~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~v~~  504 (635)
                      .+||..++++...+..    |.+....+. ++ +..++++. .|++|.+||..+       .++++.+..   +...+..
T Consensus       349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~---~g~~~~~  425 (543)
T 1nir_A          349 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG---QGGGSLF  425 (543)
T ss_dssp             EEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---SCSCCCC
T ss_pred             EEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc---CCCCceE
Confidence            9999999999888874    654444443 33 44667765 689999999988       888999987   6556666


Q ss_pred             EEe--cCCEEEEEe-------CCCcEEEEECCCCcee-eeeccceecCceeEEeccCceecccccCCCeEEEEe-----c
Q psy18018        505 LQF--NSRFVITSS-------DDGTVKLWDVKTGEFS-TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-----S  569 (635)
Q Consensus       505 ~~~--~~~~l~~~~-------~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~  569 (635)
                      +++  ++++|++++       .+++|.+||+.+++.. ..+.......   ...+...+..++|+|||+.++++     +
T Consensus       426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~g~~~~~s~~~~~~  502 (543)
T 1nir_A          426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD---LGEGAKRVVQPEYNKRGDEVWFSVWNGKN  502 (543)
T ss_dssp             EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC---CCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred             EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc---cCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence            666  789999987       2779999999999865 3321100000   00135678899999999998876     2


Q ss_pred             CCCeEEEEeCCCCceEEeee
Q psy18018        570 DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~~~~  589 (635)
                      .|+.|.|||.+++++++.+.
T Consensus       503 ~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          503 DSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             SCCEEEEEETTTTEEEEEEC
T ss_pred             CCCeEEEEECCCceEEEeec
Confidence            47999999999999998884

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=7.3e-26  Score=223.08  Aligned_cols=206  Identities=21%  Similarity=0.330  Sum_probs=163.5

Q ss_pred             ccccccccceEEEEEecCCCCCC-CceeecCCcchheeeccceeeeeeecCC----------CCCCceeeccCcceEEEE
Q psy18018         19 KVLKGHDDHVITCLQFSGKSFPC-ESFIRSSSPWKALFMSHRSVEINWRTRP----------IKDPKVLKGHDDHVITCL   87 (635)
Q Consensus        19 ~~l~gh~~~vi~~~~~s~~~~~~-~~~la~~~~~~~~~~~~~~~~~iwd~~~----------~~~~~~l~~h~~~vi~~~   87 (635)
                      ..+.+|.+.| ++++|+    |+ +.++|+++.++.        +.+||..+          .+.+..+.+|...+ .++
T Consensus       122 ~~~~~h~~~v-~~l~~~----p~~~~~lat~~~dg~--------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l  187 (430)
T 2xyi_A          122 EIKINHEGEV-NRARYM----PQNACVIATKTPSSD--------VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG-YGL  187 (430)
T ss_dssp             EEEEEESSCC-SEEEEE----TTEEEEEEEECSSSC--------EEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC-CCE
T ss_pred             EEEEcCCCcE-EEEEEC----CCCCcEEEEECCCCc--------EEEEECCCcccccCccccCCCcEEecCCCCCe-EEE
Confidence            5567999999 999999    76 789999886543        44699987          67888999999988 899


Q ss_pred             EEc--CC-EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCC
Q psy18018         88 QFS--GS-RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYD  161 (635)
Q Consensus        88 ~~s--~~-~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~d  161 (635)
                      +|+  ++ +|++|+.||.|++||+.++...       ..       .......+.+|...|.+++|   ++..+++++.|
T Consensus       188 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-------~~-------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d  253 (430)
T 2xyi_A          188 SWNPNLNGYLLSASDDHTICLWDINATPKE-------HR-------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD  253 (430)
T ss_dssp             EECTTSTTEEEEECTTSCEEEEETTSCCBG-------GG-------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             EeCCCCCCeEEEEeCCCeEEEEeCCCCCCC-------Cc-------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence            999  55 9999999999999999864210       00       00224567799999999999   57899999999


Q ss_pred             CeEEEEeCCCc---cceeeccccceeEEeeec-cCCC-EEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEee--C
Q psy18018        162 YMVKIWNPDTE---ECLHAELQETEVELSHGY-ALRS-RIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA--G  233 (635)
Q Consensus       162 g~v~iwd~~~~---~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~  233 (635)
                      |.|++||+.++   +.+..+..+...+..+.+ +.+. .+++++.||.|++||+++ .+++..+.+|...|.++.|+  +
T Consensus       254 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             SEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC
T ss_pred             CeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC
Confidence            99999999987   455555455444444444 4444 688999999999999998 67788999999999999985  3


Q ss_pred             -CEEEEeeCceeEEEecccc
Q psy18018        234 -NIIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       234 -~~l~s~~~dg~i~~w~~~~  252 (635)
                       ..+++++.||.|++||+..
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGG
T ss_pred             CCEEEEEeCCCcEEEEeCCC
Confidence             4688888888888888754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.1e-23  Score=209.66  Aligned_cols=309  Identities=11%  Similarity=0.028  Sum_probs=218.9

Q ss_pred             eCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeC--CCccceeeccccceeEEeeecc---
Q psy18018        119 SRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP--DTEECLHAELQETEVELSHGYA---  191 (635)
Q Consensus       119 ~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~---  191 (635)
                      +.+++|.+||..+++++.++..+.. +.+++|  |+++|++++.|++|++||+  .+++.+..+..........+.+   
T Consensus       156 ~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~  234 (543)
T 1nir_A          156 RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG  234 (543)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred             cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcC
Confidence            3333444444445666777763333 788888  9999999999999999999  7888887777665555555556   


Q ss_pred             -CCCEEEEEeC-CCcEEEEECCCCeEEEEEeCC----------CC-CeEEEEee---CCEEEEeeCceeEEEecccceee
Q psy18018        192 -LRSRIVSGSD-DNTLKVWSATTGKCLRTLIGH----------TG-GVWSSQMA---GNIIISGSTDRTLKGWSNAERIL  255 (635)
Q Consensus       192 -~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h----------~~-~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~  255 (635)
                       ++.++++++. +++|.+||..++++++++..+          .. .+.++.++   +.++++...++.|.+||..+...
T Consensus       235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~  314 (543)
T 1nir_A          235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN  314 (543)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred             CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence             7888888874 899999999999999988653          22 67888885   44677888899999999865321


Q ss_pred             eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhh
Q psy18018        256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATL  335 (635)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (635)
                      ....                                                                            
T Consensus       315 l~~~----------------------------------------------------------------------------  318 (543)
T 1nir_A          315 LTVT----------------------------------------------------------------------------  318 (543)
T ss_dssp             CEEE----------------------------------------------------------------------------
T ss_pred             ceeE----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ccccccCCCceEEEEecCcEEEEe-cCCCeEEEEEccCCceEEeeeC----CCcceeEEEEeCCEEEEEeCCCcEEEEEc
Q psy18018        336 HRNKKTHVPDLFGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMG----HQSLTSGMELRNNILVSGNADSTVKVWDI  410 (635)
Q Consensus       336 ~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~----~~~~v~~l~~~~~~l~s~~~dg~i~iwd~  410 (635)
                       ..........++|+|++++++++ ..++.|.+||..+++++..+..    |......+                     
T Consensus       319 -~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~---------------------  376 (543)
T 1nir_A          319 -SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF---------------------  376 (543)
T ss_dssp             -EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE---------------------
T ss_pred             -EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc---------------------
Confidence             00011233446799999987655 4588999999999998877764    33222111                     


Q ss_pred             cCCcceeEEEEEeeC-CcEEEEEe-CCCcEEEEeCCC-------CceeeeeccCCccEEEEEe--cCCEEEEEe------
Q psy18018        411 VSGTKKLMFRICLFD-GVHVVSGS-LDTSIRVWEAES-------GNLRHTLMGHQSLTSGMEL--RNNILVSGN------  473 (635)
Q Consensus       411 ~~~~~~~~~~~~~~~-~~~l~~~~-~d~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~--~~~~l~s~~------  473 (635)
                                 .+|+ +..++++. .|++|.+||..+       .+.++++.+|...+..+.+  ++++|++++      
T Consensus       377 -----------~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          377 -----------VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             -----------EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             -----------CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence                       1234 33344443 467888888877       7889999998877666655  567888887      


Q ss_pred             -CCCcEEEEECCCCcee-EEecC-----CCcccccEEEEEe--cCCEEEEEe-----CCCcEEEEECCCCceeeeecc
Q psy18018        474 -ADSTVKVWDIVSGQCL-QTLSG-----RNKHQSAVTCLQF--NSRFVITSS-----DDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       474 -~dg~i~iwd~~~~~~~-~~~~~-----~~~~~~~v~~~~~--~~~~l~~~~-----~d~~i~vwd~~~~~~~~~~~~  537 (635)
                       .+++|.+||+.+++.. ..+..     ...+...+..++|  +|+.++++.     .|+.|.|||.++++++..+..
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence             2779999999998877 44311     1225677888888  688887662     479999999999998887764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1e-22  Score=198.74  Aligned_cols=207  Identities=19%  Similarity=0.195  Sum_probs=153.0

Q ss_pred             EEEecCcEEEEecCCC---eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018        348 GFQFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF  424 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg---~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  424 (635)
                      +|+|+|++|+.++.++   .|++||+.+++.. .+..|...+.+++|+                               |
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-------------------------------p  232 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS-------------------------------P  232 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC-------------------------------T
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc-------------------------------C
Confidence            3788888888887764   8999999988765 466677777777765                               5


Q ss_pred             CCcEEE-EEeCCC--cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeC-CC--cEEEEECCCCceeEEecCCC
Q psy18018        425 DGVHVV-SGSLDT--SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNA-DS--TVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       425 ~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~  496 (635)
                      ||+.|+ +++.++  .|++||+.+++. ..+..|...+.++.|  +++.|+.++. ++  .|++||+.+++. ..+..  
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~--  308 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITW--  308 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCC--
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEec--
Confidence            555555 344343  488888887765 567778888888887  4667887776 45  677889887764 33433  


Q ss_pred             cccccEEEEEe--cCCEEEEEeCC---CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDD---GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                       +...+.+++|  +|++|++++.+   ..|++||+.+++... +..           + ..+.+++|+|||++|++++.+
T Consensus       309 -~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~-----------~-~~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          309 -EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSS-----------T-FLDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             -SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCC-----------S-SSCEEEEECTTSSEEEEEEEE
T ss_pred             -CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecC-----------C-CCcCCeEEcCCCCEEEEEEcC
Confidence             4556777887  68999888764   589999999887532 221           2 268889999999999998877


Q ss_pred             C---eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018        572 G---TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL  610 (635)
Q Consensus       572 ~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  610 (635)
                      +   .|++||+. ++.+..+     ..+.+.|.+++|+|...
T Consensus       375 ~~~~~l~~~d~~-g~~~~~l-----~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          375 GMGSVLNLVSTD-GRFKARL-----PATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TTEEEEEEEETT-SCCEEEC-----CCSSSEEEEEEECCCCC
T ss_pred             CCccEEEEEECC-CCcEEEe-----eCCCCCCcCCccccccc
Confidence            7   89999987 4445666     47889999999999653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=3.4e-21  Score=187.97  Aligned_cols=264  Identities=13%  Similarity=0.083  Sum_probs=181.8

Q ss_pred             CCCeEE--EEeeCCCcceEEEEec----------------CCEEEEEeCC------CeEEEEeCCCccceeeccccc-ee
Q psy18018        130 ESGECL--HVLVGHLAAVRCVQYD----------------GKLVVSGAYD------YMVKIWNPDTEECLHAELQET-EV  184 (635)
Q Consensus       130 ~~~~~~--~~l~~h~~~v~~l~~~----------------~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~-~~  184 (635)
                      .+++++  ..+.+|...+..+++.                +..++.++.+      ++|++||++.+. ...+..+. .+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v  181 (415)
T 2hqs_A          103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPL  181 (415)
T ss_dssp             STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCE
T ss_pred             CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcc
Confidence            344444  4577888888777662                7788887765      799999998544 44444443 44


Q ss_pred             EEeeeccCCCEEEEEeCCC---cEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018        185 ELSHGYALRSRIVSGSDDN---TLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI  261 (635)
Q Consensus       185 ~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  261 (635)
                      ......+++.+|+.++.++   .|++||+.+++.. .+..|...+.+++                               
T Consensus       182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~-------------------------------  229 (415)
T 2hqs_A          182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPA-------------------------------  229 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEE-------------------------------
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEE-------------------------------
Confidence            4555556778899888875   9999999988765 4555555544433                               


Q ss_pred             cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018        262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT  341 (635)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (635)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (415)
T 2hqs_A          230 --------------------------------------------------------------------------------  229 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCceEEEEecCcEEE-EecCCC--eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        342 HVPDLFGFQFDGVHVV-SGSLDT--SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~-~~~~dg--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                             |+|||+.|+ +++.++  .|++||+.+++. ..+..|...+.+++|+                          
T Consensus       230 -------~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s--------------------------  275 (415)
T 2hqs_A          230 -------FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF--------------------------  275 (415)
T ss_dssp             -------ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC--------------------------
T ss_pred             -------EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC--------------------------
Confidence                   777888776 555544  488999987765 4566677777777665                          


Q ss_pred             EEEEeeCCcEEEEEeC-CC--cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCC---CcEEEEECCCCceeE
Q psy18018        419 FRICLFDGVHVVSGSL-DT--SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNAD---STVKVWDIVSGQCLQ  490 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d---g~i~iwd~~~~~~~~  490 (635)
                           |+|++|++++. ++  .|++||+.+++. ..+..+...+.++.|  ++++|++++.+   ..|++||+.+++.. 
T Consensus       276 -----pdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-  348 (415)
T 2hqs_A          276 -----PDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-  348 (415)
T ss_dssp             -----TTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred             -----CCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence                 55666665554 33  577778877654 344556667777766  56788877764   58999999988764 


Q ss_pred             EecCCCcccccEEEEEe--cCCEEEEEeCCC---cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVITSSDDG---TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      .+..   +. .+.+++|  ++++|++++.++   .|++||+..+. ...+..           |...|.+++|+|.-.
T Consensus       349 ~l~~---~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~-----------~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          349 VLSS---TF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPA-----------TDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ECCC---SS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCC-----------SSSEEEEEEECCCCC
T ss_pred             EecC---CC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeC-----------CCCCCcCCccccccc
Confidence            4443   32 6777888  689999888877   79999997443 444433           577899999999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=2.1e-21  Score=206.20  Aligned_cols=262  Identities=10%  Similarity=0.049  Sum_probs=158.6

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc----------------eeEEEEe--CCEEEEEeCCC-cEE
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL----------------TSGMELR--NNILVSGNADS-TVK  406 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~----------------v~~l~~~--~~~l~s~~~dg-~i~  406 (635)
                      .++|+|||++|+.++. +.|++||+.+++.......+...                +..++|+  ++.|++++.|+ .+.
T Consensus       156 ~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~  234 (741)
T 2ecf_A          156 DAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP  234 (741)
T ss_dssp             EEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred             cccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence            3458888888887764 57888888877665544433322                3566776  45566655432 333


Q ss_pred             EEEccCC--cceeEEEE-EeeCCcEEEEEeCCCcEEEEeCCC-Cceeeeec--cCCccEEEEEe-cCCEEEEEeC-----
Q psy18018        407 VWDIVSG--TKKLMFRI-CLFDGVHVVSGSLDTSIRVWEAES-GNLRHTLM--GHQSLTSGMEL-RNNILVSGNA-----  474 (635)
Q Consensus       407 iwd~~~~--~~~~~~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~--~~~~~v~~~~~-~~~~l~s~~~-----  474 (635)
                      .|+....  ........ +...+.    ......|++||+.+ ++......  .|...+..++| +++.|++++.     
T Consensus       235 ~~~~~~~~p~~~~~~~~~~~~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~  310 (741)
T 2ecf_A          235 VQKRYEVYADRTDVIEQRYPAAGD----ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQK  310 (741)
T ss_dssp             EEEEEEECSSCEEEEEEECCBTTS----CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSS
T ss_pred             eEecCCCCCCcccceEeecCCCCC----CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCC
Confidence            3321000  00000000 000110    00111688889988 77654433  36666666554 6677776653     


Q ss_pred             CCcEEEEECCCCceeEEecCCCc-ccccEEEEEe--cCCEEEEEeCCCcEEEEECC-CCceeeeeccceecCceeEEecc
Q psy18018        475 DSTVKVWDIVSGQCLQTLSGRNK-HQSAVTCLQF--NSRFVITSSDDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~  550 (635)
                      +..|++||+.+++....+..... ....+..++|  ||+++++++.||.++||.+. +++ ...+..           +.
T Consensus       311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-----------~~  378 (741)
T 2ecf_A          311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH-----------GN  378 (741)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC-----------SS
T ss_pred             eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee-----------cc
Confidence            56799999999887766654110 0002345566  78899999999988888776 333 333322           35


Q ss_pred             Cceecc-cccCCCeEEE-EecCCC--eEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEE
Q psy18018        551 QPLLCP-HLQFNSRFVI-TSSDDG--TVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKL  625 (635)
Q Consensus       551 ~~v~~~-~~s~~~~~l~-~~~~d~--~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l  625 (635)
                      ..+..+ +|+||++.|+ +++.++  .++||++.. ++.+..+.     . ...+.+++|||||++|+....+-...-.+
T Consensus       379 ~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-----~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~  452 (741)
T 2ecf_A          379 WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS-----K-APGMHSASFARNASVYVDSWSNNSTPPQI  452 (741)
T ss_dssp             SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC-----C-SCSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc-----c-CCCceEEEECCCCCEEEEEecCCCCCCeE
Confidence            567676 5999998775 455555  899999874 55455552     2 45688999999999988776654444557


Q ss_pred             EEEee
Q psy18018        626 LVLDF  630 (635)
Q Consensus       626 ~~~d~  630 (635)
                      +.+|.
T Consensus       453 ~l~~~  457 (741)
T 2ecf_A          453 ELFRA  457 (741)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            77765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=2.4e-19  Score=172.20  Aligned_cols=257  Identities=11%  Similarity=0.098  Sum_probs=194.4

Q ss_pred             CCCceEEEEecCcEEEEecC-------CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEcc
Q psy18018        342 HVPDLFGFQFDGVHVVSGSL-------DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIV  411 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~-------dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~  411 (635)
                      .....++++|+++++++++.       ++.|.+||..+++.+..+... ..+..++++  ++ .+++...++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            34456789999998888774       568999999999988877653 346677776  45 45555667999999998


Q ss_pred             CCcceeE------------------EEEEeeCCcEEEEEe--CCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEE
Q psy18018        412 SGTKKLM------------------FRICLFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNIL  469 (635)
Q Consensus       412 ~~~~~~~------------------~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l  469 (635)
                      +++....                  ...++|+++++++++  .++.|.+||..+++....+..+...+.++.+  +++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            8764332                  235788999888776  4788999999999998888755544555555  67899


Q ss_pred             EEEeCCCcEEEEECCCCceeEEecCCC-cccccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCceeeeeccceecCcee
Q psy18018        470 VSGNADSTVKVWDIVSGQCLQTLSGRN-KHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFY  545 (635)
Q Consensus       470 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~  545 (635)
                      ++++.++.|.+||+.+++....+.... .+...+..+++  +++++++++. ++.|.+||..+++....+...       
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------  272 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-------  272 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS-------
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-------
Confidence            999999999999999999887776422 23445666777  5777666654 599999999999877665431       


Q ss_pred             EEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018        546 FLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                            ....++|+||++++++++ .++.|.+||+.+++.+..+.      ....+.+++|+|||++|+++..+
T Consensus       273 ------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          273 ------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD------TPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE------CCSEEEEEEECTTSCEEEEEEEC
T ss_pred             ------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe------cCCCCCeEEEcCCCCEEEEEEcc
Confidence                  125689999999655554 78999999999999888773      23468999999999977777665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=7.6e-20  Score=192.93  Aligned_cols=146  Identities=14%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             EeeCCcEEEEEeCCC-----cEEEEeCCCCceeeeec-c-CCcc---EE--EEEe--cCCEEEEEeCCCcEEEEECC-CC
Q psy18018        422 CLFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLM-G-HQSL---TS--GMEL--RNNILVSGNADSTVKVWDIV-SG  486 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~-~-~~~~---v~--~~~~--~~~~l~s~~~dg~i~iwd~~-~~  486 (635)
                      ++|||++|++++.++     .|++||+.+++....+. . +...   +.  .+++  +++++++++.|+.+++|++. ++
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            346666666665554     77888887773333322 1 2211   22  3444  66788999999999999876 56


Q ss_pred             ceeEEecCCCcccccEEE-EEe--cCCEEEEEe-CCC----cEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        487 QCLQTLSGRNKHQSAVTC-LQF--NSRFVITSS-DDG----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~-~~~--~~~~l~~~~-~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      +.+..+..   +...+.. ++|  +++.|+.++ .++    .|..||+.+++. ..+            .+...+.+++|
T Consensus       345 ~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l------------~~~~~~~~~~~  408 (706)
T 2z3z_A          345 RLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL------------TPESGMHRTQL  408 (706)
T ss_dssp             CEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES------------CCSSSEEEEEE
T ss_pred             CEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec------------cCCCceEEEEE
Confidence            66777765   5556655 566  677665554 444    677777776652 222            13556888999


Q ss_pred             cCCCeEEEEecCC----CeEEEEeCCCCc
Q psy18018        559 QFNSRFVITSSDD----GTVKLWDVKTGE  583 (635)
Q Consensus       559 s~~~~~l~~~~~d----~~v~iwd~~~~~  583 (635)
                      ||||++++....+    +.|++||+.+++
T Consensus       409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999988876443    569999999887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=9.8e-20  Score=193.31  Aligned_cols=368  Identities=11%  Similarity=0.087  Sum_probs=203.1

Q ss_pred             ceEEEEEEc--CCEEEEeeC-CC-----cEEEEECCCCcEEEEEeeCCCc--EEEEeCCCCe--EEEEeeCCCcceEEEE
Q psy18018         82 HVITCLQFS--GSRIVSGSD-DN-----TLKVWSATTGKCLLVSGSRDAT--LRVWHIESGE--CLHVLVGHLAAVRCVQ  149 (635)
Q Consensus        82 ~vi~~~~~s--~~~l~s~~~-d~-----~v~vWd~~~~~~ll~~~~~dg~--i~vwd~~~~~--~~~~l~~h~~~v~~l~  149 (635)
                      .+ .+++||  |++|++++. |+     .|++||+.+++...........  -..+..+...  ....+. ....|.+++
T Consensus        38 ~~-~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  115 (741)
T 2ecf_A           38 TL-MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVDYQ  115 (741)
T ss_dssp             CC-EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCE
T ss_pred             CC-CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcceeE
Confidence            45 899999  999999998 88     8999999887754333211100  0000000000  000000 113477888


Q ss_pred             e--cCCEEEEEeCCCeEEEEeCCCcc--ceeecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018        150 Y--DGKLVVSGAYDYMVKIWNPDTEE--CLHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG  224 (635)
Q Consensus       150 ~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  224 (635)
                      |  ||++|++++. +.|.+||+.+++  ....+..+ ..+......+++++|+.++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            8  9999999987 999999999882  33333333 3444455556667777776 56999999998876654443332


Q ss_pred             CeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       225 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      .+..          +..     -|-..                                                     
T Consensus       194 ~~~~----------g~~-----~~v~~-----------------------------------------------------  205 (741)
T 2ecf_A          194 TIGN----------GIA-----EFVAD-----------------------------------------------------  205 (741)
T ss_dssp             SEEE----------SCC-----CHHHH-----------------------------------------------------
T ss_pred             ceec----------ccc-----ceeee-----------------------------------------------------
Confidence            2210          000     00000                                                     


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC-eEEEEEccCCceEEeeeCCC
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT-SIRVWEAESGNLRHTLMGHQ  383 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~v~~~~~~~~~~~~~~~~  383 (635)
                                                        ........++|+|||++|++++.++ .+..|+.      .......
T Consensus       206 ----------------------------------~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~------~~~~p~~  245 (741)
T 2ecf_A          206 ----------------------------------EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR------YEVYADR  245 (741)
T ss_dssp             ----------------------------------HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEE------EEECSSC
T ss_pred             ----------------------------------eccccccceEECCCCCEEEEEEEcCCCCceEec------CCCCCCc
Confidence                                              0001122344666666665554332 2222220      0001111


Q ss_pred             cceeEEEEeCCEEEEEeCCC--cEEEEEccC-Ccce-----------eEEEEEeeCCcEEEEEeC-----CCcEEEEeCC
Q psy18018        384 SLTSGMELRNNILVSGNADS--TVKVWDIVS-GTKK-----------LMFRICLFDGVHVVSGSL-----DTSIRVWEAE  444 (635)
Q Consensus       384 ~~v~~l~~~~~~l~s~~~dg--~i~iwd~~~-~~~~-----------~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~  444 (635)
                      ..+..+.+...    +..++  .|.+||+.+ ++..           .....+ |||++|+++..     +..|++||+.
T Consensus       246 ~~~~~~~~~~~----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          246 TDVIEQRYPAA----GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             EEEEEEECCBT----TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             ccceEeecCCC----CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence            11111111100    00001  233334333 2211           112235 77777776653     5679999999


Q ss_pred             CCceeeeeccCCc----cEEEEE--ecCCEEEEEeCCCcEEEEECC-CCceeEEecCCCcccccEEEE-Ee--cCCEEE-
Q psy18018        445 SGNLRHTLMGHQS----LTSGME--LRNNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVTCL-QF--NSRFVI-  513 (635)
Q Consensus       445 ~~~~~~~~~~~~~----~v~~~~--~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~-~~--~~~~l~-  513 (635)
                      +++....+..+..    .+..+.  .+++++++++.||.++||.+. +++ ...+..   +...+..+ .|  +++.++ 
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~---~~~~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH---GNWSVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC---SSSCEEEEEEEETTTTEEEE
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee---cceEEEeEeEEeCCCCEEEE
Confidence            8887776665543    223444  467789999999988888765 344 666655   55666655 35  677665 


Q ss_pred             EEeCCC--cEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC----CeEEEEeCCCC
Q psy18018        514 TSSDDG--TVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----GTVKLWDVKTG  582 (635)
Q Consensus       514 ~~~~d~--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~v~iwd~~~~  582 (635)
                      +++.++  .+++|++.. +.....+.            ....+..++||||+++|+....+    ..+.+|+...+
T Consensus       397 ~~~~~~~~~~~l~~~~~~g~~~~~l~------------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          397 RAGIESARESQIYAVPLQGGQPQRLS------------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EECSSCTTCBEEEEEETTCCCCEECC------------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EEeCCCCceEEEEEEEcCCCCeeecc------------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            555555  899999864 33233222            13456789999999988876544    46899997544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=6.3e-20  Score=193.58  Aligned_cols=334  Identities=16%  Similarity=0.127  Sum_probs=202.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE-EEEeCCC-----------------CCeEEEEeeC-CEEEEeeCceeEEEecccce
Q psy18018        193 RSRIVSGSDDNTLKVWSATTGKCL-RTLIGHT-----------------GGVWSSQMAG-NIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       193 ~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~-~~l~s~~~dg~i~~w~~~~~  253 (635)
                      ++.++..+.++ | +||+.+++.+ ..+..|.                 ..|.+++|+. +.++.+ .++.+++||+.++
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence            66778888888 8 9999999874 4443333                 4689999963 444444 5699999998764


Q ss_pred             eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018        254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA  333 (635)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (635)
                      .....                                                                           
T Consensus       112 ~~~~l---------------------------------------------------------------------------  116 (706)
T 2z3z_A          112 KVTYL---------------------------------------------------------------------------  116 (706)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             ceEEc---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             hhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC-----CceEEeeeCCCcc--------------eeEEEEe--
Q psy18018        334 TLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES-----GNLRHTLMGHQSL--------------TSGMELR--  392 (635)
Q Consensus       334 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~-----~~~~~~~~~~~~~--------------v~~l~~~--  392 (635)
                          .........++|+|||++|+.+ .++.|++|++.+     ++.......+...              +.+++|+  
T Consensus       117 ----~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD  191 (706)
T 2z3z_A          117 ----FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK  191 (706)
T ss_dssp             ----ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT
T ss_pred             ----cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC
Confidence                0001123345699999999985 678999999998     7766554444332              3677776  


Q ss_pred             CCEEEEEeCC-CcEEEE---EccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec--cCCccEEEEEe--
Q psy18018        393 NNILVSGNAD-STVKVW---DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMEL--  464 (635)
Q Consensus       393 ~~~l~s~~~d-g~i~iw---d~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~--  464 (635)
                      ++.|++++.| ..+..+   +............+...+.    ...+..|++||+.+++......  .|...+..+.|  
T Consensus       192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp  267 (706)
T 2z3z_A          192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT----PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP  267 (706)
T ss_dssp             SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS----CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT
T ss_pred             CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC----CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC
Confidence            5566666532 222211   1111111100000000110    1134679999999887655442  46677888877  


Q ss_pred             cCCEEEEEeCCC-----cEEEEECCCCceeEEecCC--CcccccEEE--EEe--cCCEEEEEeCCCcEEEEECC-CCcee
Q psy18018        465 RNNILVSGNADS-----TVKVWDIVSGQCLQTLSGR--NKHQSAVTC--LQF--NSRFVITSSDDGTVKLWDVK-TGEFS  532 (635)
Q Consensus       465 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--~~~~~~v~~--~~~--~~~~l~~~~~d~~i~vwd~~-~~~~~  532 (635)
                      +++.+++++.++     .|++||+.+++....+...  ......+..  +..  |++++++++.|+.+++|++. ++...
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence            567888877765     8999999988444333210  001111233  444  78899999999999999876 45544


Q ss_pred             eeeccceecCceeEEeccCceec-ccccCCCeEEEEec-CCC----eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        533 TPLMSSFILNPFYFLIYSQPLLC-PHLQFNSRFVITSS-DDG----TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~-~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      ..+..           +...+.. ++|+||++.|+.++ .++    .|..||+.+++ +..+      .+...+.+++||
T Consensus       348 ~~l~~-----------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l------~~~~~~~~~~~s  409 (706)
T 2z3z_A          348 RQVTK-----------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL------TPESGMHRTQLS  409 (706)
T ss_dssp             EECCC-----------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES------CCSSSEEEEEEC
T ss_pred             EecCC-----------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec------cCCCceEEEEEC
Confidence            44432           3445665 79999998776554 444    67778887776 3344      245568999999


Q ss_pred             CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        607 ETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      |||++|+....+....-.++.+|.+
T Consensus       410 pdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          410 PDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             TTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             CCCCEEEEEecCCCCCcEEEEEECC
Confidence            9999888775543322346777754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=9.3e-20  Score=173.88  Aligned_cols=273  Identities=10%  Similarity=0.013  Sum_probs=179.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeeccccc---eeEEeeeccCCCEEE-EEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018        153 KLVVSGAYDYMVKIWNPDTEECLHAELQET---EVELSHGYALRSRIV-SGSDDNTLKVWSATTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  228 (635)
                      +++++++.+++|.+||+.+++.+..+....   ........+++..++ ++..++.|.+||+.+++.+..+.......  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc--
Confidence            478899999999999999988777665444   333344445555554 45567899999998888776554211000  


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                                                                                                      
T Consensus        80 --------------------------------------------------------------------------------   79 (337)
T 1pby_B           80 --------------------------------------------------------------------------------   79 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec------------CCCeEEEEEccCCceE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS------------LDTSIRVWEAESGNLR  376 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~------------~dg~i~v~~~~~~~~~  376 (635)
                                                     .......++++|++++++++.            .++.|.+||+.+++.+
T Consensus        80 -------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  128 (337)
T 1pby_B           80 -------------------------------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             -------------------------------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             -------------------------------ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence                                           000122345788888877775            5789999999888776


Q ss_pred             EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018        377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  456 (635)
Q Consensus       377 ~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  456 (635)
                      ..+.. ...+.+++++                               |++++++++  ++.+.+||+.+++....+..+.
T Consensus       129 ~~~~~-~~~~~~~~~s-------------------------------~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~  174 (337)
T 1pby_B          129 KAFEA-PRQITMLAWA-------------------------------RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EEEEC-CSSCCCEEEC-------------------------------TTSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred             EEEeC-CCCcceeEEC-------------------------------CCCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence            66554 2334445544                               444444444  4556666666665555444332


Q ss_pred             --ccEEEEEecCCEEEEEeCC-C-----------------------cEEEEECCCCceeEEecCCCcccccEEEEEe--c
Q psy18018        457 --SLTSGMELRNNILVSGNAD-S-----------------------TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N  508 (635)
Q Consensus       457 --~~v~~~~~~~~~l~s~~~d-g-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~  508 (635)
                        ..+ .+++++..++..+.+ +                       .|.+||+.+++.. .+.. ..+...+.++++  +
T Consensus       175 ~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~~~s~d  251 (337)
T 1pby_B          175 WEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFSTAVNPA  251 (337)
T ss_dssp             TTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEEEECTT
T ss_pred             cCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeEEECCC
Confidence              221 333444433332221 1                       5789999988765 3221 124456777777  6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018        509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      +++++++  ++.|++||+.+++....+..            ...+.+++|+||+++|++++.++.|++||+.+++.+..+
T Consensus       252 g~~l~~~--~~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          252 KTRAFGA--YNVLESFDLEKNASIKRVPL------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SSEEEEE--ESEEEEEETTTTEEEEEEEC------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEe--CCeEEEEECCCCcCcceecC------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            8888888  78999999998876655432            345778999999999999999999999999999998887


Q ss_pred             e
Q psy18018        589 V  589 (635)
Q Consensus       589 ~  589 (635)
                      .
T Consensus       318 ~  318 (337)
T 1pby_B          318 D  318 (337)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=1.1e-18  Score=165.75  Aligned_cols=265  Identities=9%  Similarity=0.028  Sum_probs=181.0

Q ss_pred             EEecCc-EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeC-CCcEEEEEccCCcc-eeEE----
Q psy18018        349 FQFDGV-HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNA-DSTVKVWDIVSGTK-KLMF----  419 (635)
Q Consensus       349 ~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~~~-~~~~----  419 (635)
                      |.++++ .+++...++.|.+||..+++.+..+..+.... .++++  ++.+++++. ++.|.+||+.+++. ....    
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            445444 46778889999999999999988887776666 88886  555555554 89999999988875 3332    


Q ss_pred             -----EEEeeCCcEEEEEeCCC---cEEEEeCCCCceeeeeccCCccEEEEEe--cCC-EEEEEeCCCc-EEEEECCCCc
Q psy18018        420 -----RICLFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN-ILVSGNADST-VKVWDIVSGQ  487 (635)
Q Consensus       420 -----~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~-i~iwd~~~~~  487 (635)
                           ..++|++++++++..++   .|.+||+.+++.+..+..+.. ..++.+  +++ ++++...++. +.+|++....
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence                 34789999999655553   899999999998887765443 466666  454 5555566688 9999987543


Q ss_pred             eeEEec-CCCcccccEEEEEe--cCCEEE-EEeCCCcEEEEECCCCce---eeeeccceecCceeEEeccCceecccccC
Q psy18018        488 CLQTLS-GRNKHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKTGEF---STPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       488 ~~~~~~-~~~~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                      .+.... ...........+++  ++++++ ++..++.|++||+.+++.   +..+.            ....+..++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~sp  230 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG------------TNNLPGTIVVSR  230 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE------------CSSCCCCEEECT
T ss_pred             cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc------------CCCCCceEEECC
Confidence            331110 00013344677777  677554 455689999999998886   33332            245678899999


Q ss_pred             CCeEEEEec-CCCeEEEEeCCCCce--EEeeeec--cCCCCCceEEEEEeCCCCeEEEEccCC-CeeEeEEEEEeee
Q psy18018        561 NSRFVITSS-DDGTVKLWDVKTGEF--IRNLVSL--DSGGSGGVVWRIRASETKLVCAVGSRN-GTEETKLLVLDFD  631 (635)
Q Consensus       561 ~~~~l~~~~-~d~~v~iwd~~~~~~--~~~~~~~--~~~~~~~~i~~l~~s~d~~~l~~~~~d-g~~~~~l~~~d~~  631 (635)
                      ||++|++++ .++.|.+||+.+++.  +..+...  ...........++|+|||++|++++.+ +.    +.+||++
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~----v~v~d~~  303 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE----LKVFTIS  303 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE----EEEEETT
T ss_pred             CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc----EEEEEec
Confidence            999776654 578899999999887  4333211  000111122568999999988766554 45    6666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=2.3e-18  Score=163.54  Aligned_cols=277  Identities=10%  Similarity=0.061  Sum_probs=169.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC-CCcEEEEECCCCeE-EEEEeCCCCCeEEE
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD-DNTLKVWSATTGKC-LRTLIGHTGGVWSS  229 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-~~~~~~h~~~v~~~  229 (635)
                      +..+++.+.++.|.+||+.+++.......+.........++++++++++. ++.|.+||+.+++. ...+..+..+.   
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---   86 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM---   86 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC---
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc---
Confidence            34577888899999999999887766555444344444455665666655 78999999887765 33333222111   


Q ss_pred             EeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhc
Q psy18018        230 QMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA  309 (635)
Q Consensus       230 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (635)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (331)
T 3u4y_A           87 --------------------------------------------------------------------------------   86 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC---eEEEEEccCCceEEeeeCCCcce
Q psy18018        310 QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLT  386 (635)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~v~~~~~~~~~~~~~~~~~~v  386 (635)
                                                         ..++++|++++++++..++   .|.+||+.+++.+..+..+. ..
T Consensus        87 -----------------------------------~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~  130 (331)
T 3u4y_A           87 -----------------------------------ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DA  130 (331)
T ss_dssp             -----------------------------------CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TE
T ss_pred             -----------------------------------cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-Cc
Confidence                                               1145888888888655553   89999999888877766543 34


Q ss_pred             eEEEEe--CC-EEEEEeCCCc-EEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEE
Q psy18018        387 SGMELR--NN-ILVSGNADST-VKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM  462 (635)
Q Consensus       387 ~~l~~~--~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  462 (635)
                      .+++++  ++ ++++...++. +.+|++.......                        +.   . ...+ ........+
T Consensus       131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~------------------------~~---~-~~~~-~~~~~~~~~  181 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF------------------------DT---G-QEFI-SGGTRPFNI  181 (331)
T ss_dssp             EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE------------------------EE---E-EEEE-CSSSSEEEE
T ss_pred             cceEECCCCCEEEEEecCCCceEEEEEECCCCcEe------------------------ec---C-Cccc-cCCCCccce
Confidence            667765  22 2333333355 5555554221100                        00   0 1111 222334556


Q ss_pred             Ee--cCCEE-EEEeCCCcEEEEECCCCce---eEEecCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCce--
Q psy18018        463 EL--RNNIL-VSGNADSTVKVWDIVSGQC---LQTLSGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEF--  531 (635)
Q Consensus       463 ~~--~~~~l-~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~--  531 (635)
                      .+  +++++ +++..++.|++||+.+++.   +..+..    ...+..+++  +++++++++ .++.|.+||+.+++.  
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence            65  56644 5555789999999999887   666663    244556666  688766554 578899999999876  


Q ss_pred             eeeeccceecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCce
Q psy18018        532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEF  584 (635)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~  584 (635)
                      +..+.......+    ........++|+||+++|++++ .++.|.+||+.+...
T Consensus       258 ~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          258 VKSFGHGLLIDP----RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEEEECCCCCCC----GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ecccccccccCC----CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            222221100000    0111225589999999886554 567999999986553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=1.1e-18  Score=166.79  Aligned_cols=262  Identities=11%  Similarity=0.151  Sum_probs=169.9

Q ss_pred             EEEEecCCCeEEEEEcc-CCce-EEeeeCCCcceeEEEEe--CCEEEEEeCC-CcEEEEEcc--CCcceeE---------
Q psy18018        355 HVVSGSLDTSIRVWEAE-SGNL-RHTLMGHQSLTSGMELR--NNILVSGNAD-STVKVWDIV--SGTKKLM---------  418 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~-~~~~-~~~~~~~~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~--~~~~~~~---------  418 (635)
                      .+++++.++.|++|++. +++. ......+...+.+++++  ++.+++++.+ +.+.+|++.  +++....         
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   86 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence            34455789999999995 3322 22223466778889997  6678888776 999999997  4443222         


Q ss_pred             -EEEEeeCCcEEEEEeC-CCcEEEEeCC---CCceeeeeccCCccEEEEEe--cCCEEEEEe-CCCcEEEEECCC-Ccee
Q psy18018        419 -FRICLFDGVHVVSGSL-DTSIRVWEAE---SGNLRHTLMGHQSLTSGMEL--RNNILVSGN-ADSTVKVWDIVS-GQCL  489 (635)
Q Consensus       419 -~~~~~~~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~-~~~~  489 (635)
                       ...++|+++++++++. ++.|.+||+.   ..+....+..+. .+.++.+  +++.+++++ .++.|++||+.+ ++..
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence             1237889998877765 8889999994   344555555443 3555555  566777776 899999999987 5443


Q ss_pred             E----EecCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECCC--CceeeeeccceecCceeEEeccCceecccccC
Q psy18018        490 Q----TLSGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF  560 (635)
Q Consensus       490 ~----~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (635)
                      .    .+..  .....+..++|  ++++++++ ..++.|++|++..  ++.............   ......+..++|+|
T Consensus       166 ~~~~~~~~~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          166 AQDPAEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN---FSDTRWAADIHITP  240 (343)
T ss_dssp             EEEEEEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT---CCSCCCEEEEEECT
T ss_pred             eeccccccc--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc---ccccCCccceEECC
Confidence            2    2222  12345677888  57766555 4889999999954  432111100000000   00123456799999


Q ss_pred             CCeEEE-EecCCCeEEEEeCC--CC--ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCCeeEeEEEEEee
Q psy18018        561 NSRFVI-TSSDDGTVKLWDVK--TG--EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNGTEETKLLVLDF  630 (635)
Q Consensus       561 ~~~~l~-~~~~d~~v~iwd~~--~~--~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg~~~~~l~~~d~  630 (635)
                      |+++|+ ++..++.|.+||+.  ++  +.+..+.     .+.. +..++|+|||++|++++ .++.  +.+|.+|.
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~-~~~~~~s~dg~~l~~~~~~~~~--v~v~~~d~  308 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-----TETQ-PRGFNVDHSGKYLIAAGQKSHH--ISVYEIVG  308 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-----CSSS-CCCEEECTTSSEEEEECTTTCE--EEEEEEET
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-----CCCc-cceEEECCCCCEEEEecCCCCe--EEEEEEcC
Confidence            998777 45578999999998  33  3333331     2223 88999999999888887 5676  56666664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=4.6e-18  Score=163.26  Aligned_cols=274  Identities=12%  Similarity=0.086  Sum_probs=187.4

Q ss_pred             CcceEEEEe--cCCEEEEEeC-------CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE-eCCCcEEEEECC
Q psy18018        142 LAAVRCVQY--DGKLVVSGAY-------DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG-SDDNTLKVWSAT  211 (635)
Q Consensus       142 ~~~v~~l~~--~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~  211 (635)
                      ...+..++|  +++++++++.       ++.|.+||..+++.+..+............+++++++++ ..++.|.+||..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            345678888  7888888774       578999999999887776554444344445566655544 557899999999


Q ss_pred             CCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccc
Q psy18018        212 TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE  291 (635)
Q Consensus       212 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (635)
                      +++.+..+..+...-.                                                                
T Consensus       120 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  135 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRT----------------------------------------------------------------  135 (353)
T ss_dssp             TCCEEEEEESCCCCCC----------------------------------------------------------------
T ss_pred             CCeeEEEEecCCCccc----------------------------------------------------------------
Confidence            8888776654321100                                                                


Q ss_pred             eeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec--CCCeEEEEE
Q psy18018        292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS--LDTSIRVWE  369 (635)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~v~~  369 (635)
                                                                   ..........++++|+++++++++  .++.|.+||
T Consensus       136 ---------------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d  170 (353)
T 3vgz_A          136 ---------------------------------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVD  170 (353)
T ss_dssp             ---------------------------------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred             ---------------------------------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence                                                         000001112356888988877765  478899999


Q ss_pred             ccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee
Q psy18018        370 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLR  449 (635)
Q Consensus       370 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  449 (635)
                      ..+++.+..+..+...+.++++                               +|+++++++++.++.+.+||..+++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------s~dg~~l~~~~~~~~i~~~d~~~~~~~  219 (353)
T 3vgz_A          171 GGNIKLKTAIQNTGKMSTGLAL-------------------------------DSEGKRLYTTNADGELITIDTADNKIL  219 (353)
T ss_dssp             TTTTEEEEEECCCCTTCCCCEE-------------------------------ETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred             CCCCceEEEecCCCCccceEEE-------------------------------CCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence            9998888777644444444444                               356666777777777888888877777


Q ss_pred             eeecc----CCccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEe-CCC
Q psy18018        450 HTLMG----HQSLTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS-DDG  519 (635)
Q Consensus       450 ~~~~~----~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~  519 (635)
                      ..+..    +...+.++.+  +++.+++++ .++.|.+||+.+++.+..+....   .  ..+++  +++++++++ .++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~--~~~~~s~dg~~l~v~~~~~~  294 (353)
T 3vgz_A          220 SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---S--LAVLFNPARNEAYVTHRQAG  294 (353)
T ss_dssp             EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---C--CCEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---C--ceEEECCCCCEEEEEECCCC
Confidence            66553    4445655665  566665555 45999999999999888877522   2  23444  777655554 789


Q ss_pred             cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC
Q psy18018        520 TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG  572 (635)
Q Consensus       520 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  572 (635)
                      .|.+||..+++.+..+..            ...+.+++|+||+++|+++..++
T Consensus       295 ~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          295 KVSVIDAKSYKVVKTFDT------------PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEETTTTEEEEEEEC------------CSEEEEEEECTTSCEEEEEEECC
T ss_pred             eEEEEECCCCeEEEEEec------------CCCCCeEEEcCCCCEEEEEEccc
Confidence            999999999887765543            34568899999999887776554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=6.9e-19  Score=167.79  Aligned_cols=252  Identities=13%  Similarity=0.105  Sum_probs=183.9

Q ss_pred             cEEEEecCCCeEEEEEccCCceEEeeeCCCc--ceeEEEEe--CCEE-EEEeCCCcEEEEEccCCcceeEEE--------
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR--NNIL-VSGNADSTVKVWDIVSGTKKLMFR--------  420 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~--------  420 (635)
                      +++++++.++.|.+||..+++.+..+.....  .+..++++  ++.+ ++...++.|.+||+.+++......        
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4688999999999999999988887764332  47788886  4454 556668899999998876554332        


Q ss_pred             ------EEeeCCcEEEEEe------------CCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEE
Q psy18018        421 ------ICLFDGVHVVSGS------------LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKV  480 (635)
Q Consensus       421 ------~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~i  480 (635)
                            .++|++++++++.            .++.|.+||+.+++....+... ..+.++.+  ++++++++  ++.|++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe--CCeEEE
Confidence                  3678999998886            5799999999998887777643 23444444  66777776  688999


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-C-----------------------cEEEEECCCCceeeeec
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-G-----------------------TVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-~-----------------------~i~vwd~~~~~~~~~~~  536 (635)
                      ||+.+++....+.... ...++ .+..+++.++..+.+ +                       .|.+||+.+++.. ...
T Consensus       159 ~d~~~~~~~~~~~~~~-~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~  235 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQS-WEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTT-TTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred             EECCCCcEeeeeeccc-cCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence            9999998887776422 11222 334466655444322 2                       4789999988764 221


Q ss_pred             cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                               ...+...+.+++|+||+++++++  ++.|.+||+.+++.+..+.      ....+.+++|+|||++|++++
T Consensus       236 ---------~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          236 ---------VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------LPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             ---------EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSCEEEEES
T ss_pred             ---------cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec------CCCceeeEEECCCCCEEEEEc
Confidence                     12245567889999999999988  7999999999999887773      224578999999999999988


Q ss_pred             CCCeeEeEEEEEeeec
Q psy18018        617 RNGTEETKLLVLDFDV  632 (635)
Q Consensus       617 ~dg~~~~~l~~~d~~~  632 (635)
                      .++.    |.+||.+.
T Consensus       299 ~~~~----i~v~d~~~  310 (337)
T 1pby_B          299 ALGD----LAAYDAET  310 (337)
T ss_dssp             BSSE----EEEEETTT
T ss_pred             CCCc----EEEEECcC
Confidence            8887    66666643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=2.6e-18  Score=164.29  Aligned_cols=219  Identities=12%  Similarity=0.157  Sum_probs=124.6

Q ss_pred             eEEEEecCcEEEEec-CCCeEEEEEcc---CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        346 LFGFQFDGVHVVSGS-LDTSIRVWEAE---SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~-~dg~i~v~~~~---~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      .++++|+++++++++ .++.|.+|++.   ..+....+..+ ..+.+++++                             
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s-----------------------------  137 (343)
T 1ri6_A           88 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS-----------------------------  137 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC-----------------------------
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC-----------------------------
Confidence            455888888776555 47889999884   23333333332 234455554                             


Q ss_pred             EeeCCcEEEEEe-CCCcEEEEeCCC-Cceee----eecc-CCccEEEEEe--cCCEEE-EEeCCCcEEEEECCC--Cce-
Q psy18018        422 CLFDGVHVVSGS-LDTSIRVWEAES-GNLRH----TLMG-HQSLTSGMEL--RNNILV-SGNADSTVKVWDIVS--GQC-  488 (635)
Q Consensus       422 ~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~-~~~~v~~~~~--~~~~l~-s~~~dg~i~iwd~~~--~~~-  488 (635)
                        |+++++++++ .++.|.+||+.+ ++...    .+.. ....+.++.+  ++++++ ++..++.|.+|++..  ++. 
T Consensus       138 --~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          138 --PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             --TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             --CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence              4454444444 555666666655 43321    1222 2235556666  456555 445889999999953  332 


Q ss_pred             -eEEecCC-C--cccccEEEEEe--cCCEEE-EEeCCCcEEEEECCC--CceeeeeccceecCceeEEeccCceeccccc
Q psy18018        489 -LQTLSGR-N--KHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       489 -~~~~~~~-~--~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                       ...+... .  .....+..++|  ++++|+ +...++.|++||+..  +.... ..         .......+..++|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~-~~---------~~~~~~~~~~~~~s  285 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK-EG---------FQPTETQPRGFNVD  285 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE-EE---------EEECSSSCCCEEEC
T ss_pred             EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE-ee---------eecCCCccceEEEC
Confidence             2222211 1  11234566777  577776 455789999999983  22111 10         11122348899999


Q ss_pred             CCCeEEEEec-CCCeEEEEe--CCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018        560 FNSRFVITSS-DDGTVKLWD--VKTGEFIRNLVSLDSGGSGGVVWRIRASETKL  610 (635)
Q Consensus       560 ~~~~~l~~~~-~d~~v~iwd--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  610 (635)
                      |++++|++++ .++.|.+|+  ..+++.. .+..+.   ......+++|.|+.+
T Consensus       286 ~dg~~l~~~~~~~~~v~v~~~d~~~g~~~-~~~~~~---~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          286 HSGKYLIAAGQKSHHISVYEIVGEQGLLH-EKGRYA---VGQGPMWVVVNAHEG  335 (343)
T ss_dssp             TTSSEEEEECTTTCEEEEEEEETTTTEEE-EEEEEE---CSSSCCEEEEEEEC-
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCceee-Eccccc---cCCCCeeEEEEcccC
Confidence            9999888877 689999994  4466432 222211   123455777777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.9e-19  Score=168.26  Aligned_cols=224  Identities=14%  Similarity=0.113  Sum_probs=151.2

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccC-CceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ...++|+|+++++++++ ++.|++||+.+ ++.......+. ..+.+++|+                             
T Consensus        44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-----------------------------   93 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS-----------------------------   93 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC-----------------------------
T ss_pred             eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC-----------------------------
Confidence            33456889999888876 77999999998 77766665553 456666664                             


Q ss_pred             EeeCCcEEEEEe--CC--CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEE-EEeCCCcEEEEEC--CCCceeEEe
Q psy18018        422 CLFDGVHVVSGS--LD--TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILV-SGNADSTVKVWDI--VSGQCLQTL  492 (635)
Q Consensus       422 ~~~~~~~l~~~~--~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s~~~dg~i~iwd~--~~~~~~~~~  492 (635)
                        |+++++++++  .+  ..|..++..+++ ...+..+. .+..+.+  +++.++ +++.++.+++|++  .+++ ...+
T Consensus        94 --pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~  168 (297)
T 2ojh_A           94 --PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRL  168 (297)
T ss_dssp             --TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEEC
T ss_pred             --CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEc
Confidence              4445555554  22  234444444444 23333333 3666666  566665 7888999999985  3333 3444


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECC-CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      ..   +...+.+++|  ++++++.++ .++.+++|++. .+.....+..           +...+.+++|+||+++|+++
T Consensus       169 ~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          169 TH---GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-----------SAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             CC---SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-----------CSEEEEEEEECTTSSEEEEE
T ss_pred             cc---CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-----------CCcccCCeEECCCCCEEEEE
Confidence            43   6677888888  678777665 58999999986 3433333322           34567889999999999988


Q ss_pred             cCC-----------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        569 SDD-----------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       569 ~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      +.+           +.|.+||+.+++.......   .++...+..++|+|||++|++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL---FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE---EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeecc---CCCCcccccceECCCCCEEEEEEecc
Confidence            765           5699999998876433321   24567788999999999998887764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=3.3e-19  Score=188.78  Aligned_cols=332  Identities=9%  Similarity=-0.005  Sum_probs=210.5

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC---CeEEEEe--eCCEEEEeeCc---------eeEEEecccceee
Q psy18018        190 YALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG---GVWSSQM--AGNIIISGSTD---------RTLKGWSNAERIL  255 (635)
Q Consensus       190 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~--~~~~l~s~~~d---------g~i~~w~~~~~~~  255 (635)
                      .+++.++ ..+.||.|++||+.+++....+..|..   .|.+++|  +|++|++++.+         +.+.+||+.++..
T Consensus        25 spdg~~~-~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  103 (723)
T 1xfd_A           25 ISDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP  103 (723)
T ss_dssp             SSSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred             cCCCcEE-EEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence            3444544 457899999999999998888877765   4888888  58899998764         7888999876532


Q ss_pred             eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhh
Q psy18018        256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATL  335 (635)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (635)
                      ...   ..                                                                        
T Consensus       104 ~~l---~~------------------------------------------------------------------------  108 (723)
T 1xfd_A          104 QSL---DP------------------------------------------------------------------------  108 (723)
T ss_dssp             EEC---CC------------------------------------------------------------------------
T ss_pred             Eec---cC------------------------------------------------------------------------
Confidence            000   00                                                                        


Q ss_pred             ccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce------------------eEEEEe--CCE
Q psy18018        336 HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT------------------SGMELR--NNI  395 (635)
Q Consensus       336 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v------------------~~l~~~--~~~  395 (635)
                       ...........+|||||++|+.++. +.|++|++.+++.......+...+                  .+++|+  ++.
T Consensus       109 -~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~  186 (723)
T 1xfd_A          109 -PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR  186 (723)
T ss_dssp             -TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred             -CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE
Confidence             0001112334669999999999886 789999999888776665544433                  678887  567


Q ss_pred             EEEEeCC-CcEEEEEccCCcc----eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC------CccEEEEEe
Q psy18018        396 LVSGNAD-STVKVWDIVSGTK----KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH------QSLTSGMEL  464 (635)
Q Consensus       396 l~s~~~d-g~i~iwd~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~v~~~~~  464 (635)
                      |++++.+ +.+.+|++.....    ......+.++|..    ..+..|++||+.+++....+..+      ...+..+.|
T Consensus       187 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  262 (723)
T 1xfd_A          187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (723)
T ss_dssp             EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence            7777654 5677777643211    1112223334431    23348999999988865666654      566777777


Q ss_pred             --cCCEEEEEeC----CCcEEEEECCCCceeEEecCCCcccccE----EEEEe--cCCEEEE--EeCCC------cEEEE
Q psy18018        465 --RNNILVSGNA----DSTVKVWDIVSGQCLQTLSGRNKHQSAV----TCLQF--NSRFVIT--SSDDG------TVKLW  524 (635)
Q Consensus       465 --~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v----~~~~~--~~~~l~~--~~~d~------~i~vw  524 (635)
                        +++++++...    +..|++||+.+++....+...  +...+    ..++|  ||+.|+.  +..++      .|.+|
T Consensus       263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~  340 (723)
T 1xfd_A          263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS  340 (723)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred             eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEE
Confidence              4557766543    357999999998876655321  11211    24455  7886664  45666      56777


Q ss_pred             E-CCCCce--eeeeccceecCceeEEeccCceec-ccccCCCeEEEEecCC---CeEEEEeCCCCc--eEEeeeeccCCC
Q psy18018        525 D-VKTGEF--STPLMSSFILNPFYFLIYSQPLLC-PHLQFNSRFVITSSDD---GTVKLWDVKTGE--FIRNLVSLDSGG  595 (635)
Q Consensus       525 d-~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---~~v~iwd~~~~~--~~~~~~~~~~~~  595 (635)
                      | ..+++.  ...+..           ....+.. ++|+|||++|+..+.+   +.++||++....  ....+..  ...
T Consensus       341 d~~~~~~~~~~~~l~~-----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~--~~~  407 (723)
T 1xfd_A          341 SSQPNSSNDNIQSITS-----------GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC--DLV  407 (723)
T ss_dssp             CSSCCSSSCCCCBSCC-----------SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST--TSS
T ss_pred             eccCCCCccceeEeec-----------CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc--ccc
Confidence            7 344331  222221           1223333 6899999998766554   789999986532  2333310  001


Q ss_pred             CCceEEEEEeCCCCeEEEEccCC
Q psy18018        596 SGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       596 ~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                      +...+..++|+|||++|+.....
T Consensus       408 ~~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          408 ENCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             SSCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCCeEEEEECCCCCEEEEEccC
Confidence            45678899999999988875443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=2.2e-18  Score=177.11  Aligned_cols=260  Identities=10%  Similarity=0.111  Sum_probs=190.2

Q ss_pred             CCCceEEEEecCcEEEEecC-CCeEEEEEccCCceEEeeeCCC-cceeEEEEeCC-EEEEEeC---CCcEEEEEccC---
Q psy18018        342 HVPDLFGFQFDGVHVVSGSL-DTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNN-ILVSGNA---DSTVKVWDIVS---  412 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~-~l~s~~~---dg~i~iwd~~~---  412 (635)
                      .....++++|||++|+.++. +|.+.+|++.+++... +..|. ..+..++|+++ .+++++.   +....+|.+..   
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence            34567889999999998877 9999999997666544 44444 68899999855 4555554   45566765543   


Q ss_pred             -Ccc------eeEEEEEeeCCcE-EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCC----CcEEE
Q psy18018        413 -GTK------KLMFRICLFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD----STVKV  480 (635)
Q Consensus       413 -~~~------~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d----g~i~i  480 (635)
                       ...      ......++|+++. +++...++.+.+||+.+++.......+. .-..++++|+++++++.+    +.|++
T Consensus       101 g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~  179 (582)
T 3o4h_A          101 GEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFT  179 (582)
T ss_dssp             TCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             CccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence             111      1223467888864 3344455556699999887665554443 444566789999988877    78999


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC--cEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      ||+.+++.. .+..   +...+..++|  ||++|+++..++  .|++||+.+++.. .+..           +...+..+
T Consensus       180 ~d~~~g~~~-~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-----------~~~~~~~~  243 (582)
T 3o4h_A          180 SNLSSGGLR-VFDS---GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-----------PSKDFSSY  243 (582)
T ss_dssp             EETTTCCCE-EECC---SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-----------SCSHHHHH
T ss_pred             EcCCCCCce-Eeec---CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-----------CCcChhhh
Confidence            999888754 4554   6677888888  799999888888  8999999988765 3322           45566777


Q ss_pred             c--------ccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        557 H--------LQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       557 ~--------~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      +        |+|||.++++++.|+++++|++  |+.+..        ..+.+.+++|+ |++++++++.+.. .-.+|.+
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--------~~~~v~~~~~s-dg~~l~~~s~~~~-p~~l~~~  311 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--------PQGNHGRVVLW-RGKLVTSHTSLST-PPRIVSL  311 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--------CSSEEEEEEEE-TTEEEEEEEETTE-EEEEEEE
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--------CCCceEEEEec-CCEEEEEEcCCCC-CCeEEEE
Confidence            7        9999999999999999999999  665431        23578999999 9999998888775 3567877


Q ss_pred             eee
Q psy18018        629 DFD  631 (635)
Q Consensus       629 d~~  631 (635)
                      |.+
T Consensus       312 d~~  314 (582)
T 3o4h_A          312 PSG  314 (582)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=7.6e-19  Score=186.01  Aligned_cols=271  Identities=10%  Similarity=0.037  Sum_probs=190.5

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc---ceeEEEEe--CCEEEEEeCC---------CcEEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGNAD---------STVKVWD  409 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~v~~l~~~--~~~l~s~~~d---------g~i~iwd  409 (635)
                      ...++|+|||+++++ +.||.|++||..+++....+..|..   .+.+++|+  ++.|++++.+         +.+.+||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            455679999997766 7899999999999998888877765   48999997  6788888764         6788999


Q ss_pred             ccCCccee-----------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE------------------E
Q psy18018        410 IVSGTKKL-----------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT------------------S  460 (635)
Q Consensus       410 ~~~~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v------------------~  460 (635)
                      +.+++...           ....++|||+.|+.++. +.|++||+.+++.......+...+                  .
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A           98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            98876421           12348999999999886 789999999988776665544322                  4


Q ss_pred             EEEe--cCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEecCCC---ccccc
Q psy18018        461 GMEL--RNNILVSGNADS----------------------------------TVKVWDIVSGQCLQTLSGRN---KHQSA  501 (635)
Q Consensus       461 ~~~~--~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~---~~~~~  501 (635)
                      ++.|  +++.|++++.|+                                  .|++||+.+++....+....   .+...
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence            5665  677888877543                                  79999999887655555311   12566


Q ss_pred             EEEEEe--cCCEEEEEeC----CCcEEEEECCCCceeeeeccceecCceeEEeccCce----ecccccCCCeEEEE--ec
Q psy18018        502 VTCLQF--NSRFVITSSD----DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL----LCPHLQFNSRFVIT--SS  569 (635)
Q Consensus       502 v~~~~~--~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~--~~  569 (635)
                      +..++|  ||+++++.+.    +..|++||+.+++........          +...+    ..++|||||+.|+.  +.
T Consensus       257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE----------SEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE----------CSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec----------cCCEEeccCCCceEcCCCCeEEEEEec
Confidence            788888  6888877653    357999999998765443221          22222    37899999997775  45


Q ss_pred             CCC------eEEEEe-CCCCce--EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC---CeeEeEEEEEeeec
Q psy18018        570 DDG------TVKLWD-VKTGEF--IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN---GTEETKLLVLDFDV  632 (635)
Q Consensus       570 ~d~------~v~iwd-~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d---g~~~~~l~~~d~~~  632 (635)
                      .++      .|.+|| ..+++.  ...+.    .++......++|+|||+.|+..+.+   +.  ++||.++.+.
T Consensus       327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~--~~l~~~~~~~  395 (723)
T 1xfd_A          327 PQGGRGKFYHITVSSSQPNSSNDNIQSIT----SGDWDVTKILAYDEKGNKIYFLSTEDLPRR--RQLYSANTVG  395 (723)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSC----CSSSCEEEEEEEETTTTEEEEEESSSCTTC--CEEEEECSST
T ss_pred             ccCCCcceeEEEEEeccCCCCccceeEee----cCCeEEEeeeEEcCCCCEEEEEEcCCCCcc--eEEEEEeCCC
Confidence            666      577777 344441  44442    1233333347999999998766554   44  7788887643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=2.5e-17  Score=153.73  Aligned_cols=181  Identities=12%  Similarity=0.114  Sum_probs=117.8

Q ss_pred             EEEEecCcEEEEec--CCCeEEEEE--ccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        347 FGFQFDGVHVVSGS--LDTSIRVWE--AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       347 ~~~s~~~~~l~~~~--~dg~i~v~~--~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      ++|+|+++++++++  .++...+|.  ..++. ...+..+. .+..++|                               
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~-------------------------------  136 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGW-------------------------------  136 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEE-------------------------------
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEE-------------------------------
Confidence            45888888888887  334444444  44443 22333222 2444444                               


Q ss_pred             eeCCcEEE-EEeCCCcEEEEeCCC-CceeeeeccCCccEEEEEec--CCEEEEEe-CCCcEEEEECC-CCceeEEecCCC
Q psy18018        423 LFDGVHVV-SGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELR--NNILVSGN-ADSTVKVWDIV-SGQCLQTLSGRN  496 (635)
Q Consensus       423 ~~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~  496 (635)
                      +|++++++ ++..++.+++|++.. +.....+..+...+.++.++  ++.++.++ .++.+++|++. .+.....+..  
T Consensus       137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--  214 (297)
T 2ojh_A          137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--  214 (297)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--
T ss_pred             CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--
Confidence            45555555 455666666766422 23345566677788888874  56666555 58999999886 4555666655  


Q ss_pred             cccccEEEEEe--cCCEEEEEeCC-----------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDD-----------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                       +...+.+++|  ++++|++++.+           +.|++||+.+++......         ...|...+.+++|+||++
T Consensus       215 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~spdg~  284 (297)
T 2ojh_A          215 -SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD---------LFGGQGTMNSPNWSPDGD  284 (297)
T ss_dssp             -CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE---------EEESTTTSCSCCBCTTSS
T ss_pred             -CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec---------cCCCCcccccceECCCCC
Confidence             6667888888  68888888766           569999999876433221         113567899999999999


Q ss_pred             EEEEecCCC
Q psy18018        564 FVITSSDDG  572 (635)
Q Consensus       564 ~l~~~~~d~  572 (635)
                      +|++++.+.
T Consensus       285 ~l~~~~~~~  293 (297)
T 2ojh_A          285 EFAYVRYFP  293 (297)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            998887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=3.7e-16  Score=150.15  Aligned_cols=251  Identities=13%  Similarity=0.118  Sum_probs=166.0

Q ss_pred             CCCceEEEEecCcEEEEecCC----CeEEEEEccC--Cc--eEEeeeCCCcceeEEEEeCCEEEEEe-CCCcEEEEEccC
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLD----TSIRVWEAES--GN--LRHTLMGHQSLTSGMELRNNILVSGN-ADSTVKVWDIVS  412 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~d----g~i~v~~~~~--~~--~~~~~~~~~~~v~~l~~~~~~l~s~~-~dg~i~iwd~~~  412 (635)
                      ..+..++++|++++|++++.+    +.|.+|++..  ++  .+.....+......++++++.++++. .++.+.+|++..
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~  129 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQ  129 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCC
Confidence            344557899999999988875    7999999875  43  23344445566777777877777665 678999999875


Q ss_pred             Cccee-----------------------EEEEEeeCCcEEEEEe-CCCcEEEEeCCCCc-------ee------eeeccC
Q psy18018        413 GTKKL-----------------------MFRICLFDGVHVVSGS-LDTSIRVWEAESGN-------LR------HTLMGH  455 (635)
Q Consensus       413 ~~~~~-----------------------~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-------~~------~~~~~~  455 (635)
                      .....                       ....++|+|+++++++ .++.+.+|++....       +.      .....+
T Consensus       130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (361)
T 3scy_A          130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP  209 (361)
T ss_dssp             TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred             CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence            32211                       2256899999777665 47899999887543       21      112223


Q ss_pred             CccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCce--eEEecCCCcccccEEEEEe--cCCEEEEEeCC--CcEEEEEC
Q psy18018        456 QSLTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQF--NSRFVITSSDD--GTVKLWDV  526 (635)
Q Consensus       456 ~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d--~~i~vwd~  526 (635)
                      ......+.+  +++++++++ .++.|.+|++.+++.  +..+.....+......++|  |+++|+++..+  +.|.+|++
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            344566666  566776666 689999999987654  3333332223344567777  78888776654  89999999


Q ss_pred             C--CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEE--eCCCCceEEeeeeccCCCCCceEE
Q psy18018        527 K--TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLW--DVKTGEFIRNLVSLDSGGSGGVVW  601 (635)
Q Consensus       527 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~i~  601 (635)
                      .  +++......          ......+..++|+|||++|++++ .++.|.+|  |.++++......    ..+...+.
T Consensus       290 ~~~~g~~~~~~~----------~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~----~~~~~~p~  355 (361)
T 3scy_A          290 DETNGTLTKVGY----------QLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK----DIKVDKPV  355 (361)
T ss_dssp             CTTTCCEEEEEE----------EECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC----CEECSSEE
T ss_pred             cCCCCcEEEeeE----------ecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce----eeeCCCCe
Confidence            6  344221111          11134577899999999888887 67899995  556777654332    12334678


Q ss_pred             EEEeC
Q psy18018        602 RIRAS  606 (635)
Q Consensus       602 ~l~~s  606 (635)
                      +++|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88885

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.79  E-value=1.6e-16  Score=151.89  Aligned_cols=257  Identities=16%  Similarity=0.189  Sum_probs=160.1

Q ss_pred             CCeEEEEEcc--CCceEE-eeeCCCcceeEEEEe--CCEEEEEeC---CCcEEEEEccCCcceeEE-----------EEE
Q psy18018        362 DTSIRVWEAE--SGNLRH-TLMGHQSLTSGMELR--NNILVSGNA---DSTVKVWDIVSGTKKLMF-----------RIC  422 (635)
Q Consensus       362 dg~i~v~~~~--~~~~~~-~~~~~~~~v~~l~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~-----------~~~  422 (635)
                      ++.|.+|+++  +++... ....+......++++  ++ +++++.   ++.|.+|++.+++.....           ..+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            4567777765  454432 233445667778887  44 555544   689999999766532222           236


Q ss_pred             eeCCcEEEEEe-CCCcEEEEeCCC-Cc--eeeeeccC---------CccEEEEEe--cCCEEEEEeCCCcEEEEECC-CC
Q psy18018        423 LFDGVHVVSGS-LDTSIRVWEAES-GN--LRHTLMGH---------QSLTSGMEL--RNNILVSGNADSTVKVWDIV-SG  486 (635)
Q Consensus       423 ~~~~~~l~~~~-~d~~i~~~d~~~-~~--~~~~~~~~---------~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~-~~  486 (635)
                      +|++++|++++ .++.+.+|++.. +.  .+..+...         ...+.++.+  +++++++...++.|++|++. ++
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            88999998888 778999999963 33  22332211         123555666  56777777778999999998 45


Q ss_pred             ceeE--EecCCCcccccEEEEEe--cCCEEEE-EeCCCcEEEEECCC--CceeeeeccceecCceeEEeccCceeccccc
Q psy18018        487 QCLQ--TLSGRNKHQSAVTCLQF--NSRFVIT-SSDDGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ  559 (635)
Q Consensus       487 ~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~-~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  559 (635)
                      +...  .+..  ........++|  ||+++++ ...++.+++|++..  ++........  ..+.. ......+..++|+
T Consensus       174 ~~~~~~~~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~--~~~~~-~~~~~~~~~i~~s  248 (347)
T 3hfq_A          174 QLSEQSVLTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK--TIPAD-YTAHNGAAAIRLS  248 (347)
T ss_dssp             CEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE--SSCTT-CCSCCEEEEEEEC
T ss_pred             cEEEeeeEEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee--ecCCC-CCCCCcceeEEEC
Confidence            4332  1221  12234566777  6886555 56788999999874  4322111100  00000 0011347789999


Q ss_pred             CCCeEEE-EecCCCeEEEEeCCCC---ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC-CeeEeEEEEEeee
Q psy18018        560 FNSRFVI-TSSDDGTVKLWDVKTG---EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN-GTEETKLLVLDFD  631 (635)
Q Consensus       560 ~~~~~l~-~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d-g~~~~~l~~~d~~  631 (635)
                      |||++|+ +...++.|.+||+...   +.+..+     ..+...+..++|+|||++|++++.+ +.  +.+|.+|.+
T Consensus       249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~~spdg~~l~v~~~~~~~--v~v~~~d~~  318 (347)
T 3hfq_A          249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-----STEGDFPRDFDLDPTEAFVVVVNQNTDN--ATLYARDLT  318 (347)
T ss_dssp             TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-----ECSSSCCCEEEECTTSSEEEEEETTTTE--EEEEEECTT
T ss_pred             CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-----ecCCCCcCeEEECCCCCEEEEEEcCCCc--EEEEEEeCC
Confidence            9999874 5556899999999733   333333     2344567899999999988888765 55  556655543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=4.2e-18  Score=166.46  Aligned_cols=154  Identities=14%  Similarity=0.069  Sum_probs=116.8

Q ss_pred             CCccEEEEEec--CCEEE----EEeCCCcEEEEECCCC--------ceeEEecCCCcccccEEEEEec---CCEEEEEeC
Q psy18018        455 HQSLTSGMELR--NNILV----SGNADSTVKVWDIVSG--------QCLQTLSGRNKHQSAVTCLQFN---SRFVITSSD  517 (635)
Q Consensus       455 ~~~~v~~~~~~--~~~l~----s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~  517 (635)
                      +...|.+++|+  +++|+    +++.|+.|++||+.++        +.+..+.....|...|.+++|+   +.+|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            56679999885  66888    7889999999998764        3333333334488999999993   679999999


Q ss_pred             CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC--CC
Q psy18018        518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS--GG  595 (635)
Q Consensus       518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~  595 (635)
                      ||+|++||++++......           ..|...|++++|+|+|++|++|+.||+|++||++ ++....+.....  ..
T Consensus       171 Dg~v~iwD~~~~~~~~~~-----------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~  238 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCAT-----------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESD  238 (434)
T ss_dssp             TSCEEEEEESSSEEEEEE-----------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred             CCeEEEEEcCCCcceeec-----------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCC
Confidence            999999999987543222           2367899999999999999999999999999998 665555532211  12


Q ss_pred             CCceEEEEEeCCCCeEEEE-ccCCCe
Q psy18018        596 SGGVVWRIRASETKLVCAV-GSRNGT  620 (635)
Q Consensus       596 ~~~~i~~l~~s~d~~~l~~-~~~dg~  620 (635)
                      |...|.+++|++++.++++ ...+|.
T Consensus       239 ~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          239 HPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             CceeEEEEEEecCceEEEEEccCCCc
Confidence            3458999999999998854 334444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=1.5e-15  Score=144.69  Aligned_cols=245  Identities=12%  Similarity=0.100  Sum_probs=167.1

Q ss_pred             EEEEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCC------CcceeEEEEe--CCEEEEEeC--CCcEE
Q psy18018        347 FGFQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGH------QSLTSGMELR--NNILVSGNA--DSTVK  406 (635)
Q Consensus       347 ~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~------~~~v~~l~~~--~~~l~s~~~--dg~i~  406 (635)
                      ++++||++++++++          .++.|.+||..+.+.+..+...      ......++++  +++|+++..  ++.|.
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~  134 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG  134 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence            34788888887775          2567999999888888776532      2345567775  678887763  68899


Q ss_pred             EEEccCCcceeE-E-------EEEeeCC-cEEEEEeCCCcEEEEeCCC-Cceeee------eccCCccEE-EEEecCCEE
Q psy18018        407 VWDIVSGTKKLM-F-------RICLFDG-VHVVSGSLDTSIRVWEAES-GNLRHT------LMGHQSLTS-GMELRNNIL  469 (635)
Q Consensus       407 iwd~~~~~~~~~-~-------~~~~~~~-~~l~~~~~d~~i~~~d~~~-~~~~~~------~~~~~~~v~-~~~~~~~~l  469 (635)
                      +||+.+++.... .       ....|++ ..+++.+.||.+.+++... ++....      +..+..++. ....++..+
T Consensus       135 v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  214 (361)
T 2oiz_A          135 IVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA  214 (361)
T ss_dssp             EEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred             EEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence            999998865543 1       1234544 6778888999999999865 554421      222222211 123456667


Q ss_pred             EEEeCCCcEEEEECCCCce--eEEecCCC---------cccccEEEEEecCCEEEEEeC-----------CCcEEEEECC
Q psy18018        470 VSGNADSTVKVWDIVSGQC--LQTLSGRN---------KHQSAVTCLQFNSRFVITSSD-----------DGTVKLWDVK  527 (635)
Q Consensus       470 ~s~~~dg~i~iwd~~~~~~--~~~~~~~~---------~~~~~v~~~~~~~~~l~~~~~-----------d~~i~vwd~~  527 (635)
                      +..+.++.+.++|+.....  ...+....         ........+..+++.++++..           ++.|.+||+.
T Consensus       215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~  294 (361)
T 2oiz_A          215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK  294 (361)
T ss_dssp             EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred             EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence            7777889999999875432  22221100         011112234446677666543           3489999999


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC--ceEEeeeeccCCCCCceEEEEEe
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG--EFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                      +++.+..+..+           .  ..+++|+|||++|++++. +.|.+||+.++  +.+..+     .........+++
T Consensus       295 t~~~v~~i~~~-----------~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i-----~~~G~~P~~~~~  355 (361)
T 2oiz_A          295 TKQRVARIPGR-----------D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI-----EGAAEASLQVQF  355 (361)
T ss_dssp             TTEEEEEEECT-----------T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE-----TTSCSSEEEEEE
T ss_pred             CCcEEEEEecC-----------C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe-----ccCCCCcEEEEe
Confidence            99988776542           2  888999999999998887 99999999999  988887     345667789999


Q ss_pred             CCCCe
Q psy18018        606 SETKL  610 (635)
Q Consensus       606 s~d~~  610 (635)
                      +|||+
T Consensus       356 ~p~G~  360 (361)
T 2oiz_A          356 HPVGG  360 (361)
T ss_dssp             CCCSC
T ss_pred             cCCCC
Confidence            99986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=3.1e-17  Score=160.31  Aligned_cols=201  Identities=12%  Similarity=0.089  Sum_probs=139.2

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCce----------EEe-----eeCCCcceeEEEEeCCEEEEEeCCCcEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL----------RHT-----LMGHQSLTSGMELRNNILVSGNADSTVK  406 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~----------~~~-----~~~~~~~v~~l~~~~~~l~s~~~dg~i~  406 (635)
                      .....+++++++.++++++.++ +++|+......          +..     ...+...|.+++|+              
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--------------  101 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS--------------  101 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC--------------
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc--------------
Confidence            3467788999999999999887 88887642111          000     01223345555554              


Q ss_pred             EEEccCCcceeEEEEEeeCCcEEE----EEeCCCcEEEEeCCCC--------c---eeeeeccCCccEEEEEec---CCE
Q psy18018        407 VWDIVSGTKKLMFRICLFDGVHVV----SGSLDTSIRVWEAESG--------N---LRHTLMGHQSLTSGMELR---NNI  468 (635)
Q Consensus       407 iwd~~~~~~~~~~~~~~~~~~~l~----~~~~d~~i~~~d~~~~--------~---~~~~~~~~~~~v~~~~~~---~~~  468 (635)
                                       +++++|+    +++.|+.|++||+.++        +   ....+.+|...|.+++|+   +++
T Consensus       102 -----------------pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A          102 -----------------CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             -----------------TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred             -----------------CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence                             4555555    4455556666655432        1   245567799999999995   458


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeE
Q psy18018        469 LVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       469 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  546 (635)
                      +++++.||+|++||++++........   |...|.+++|  ++++|++|+.||.|++||.+ ++....+..+....    
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~---~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~----  236 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLP---STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE----  236 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEEC---GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC----
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccC---CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC----
Confidence            99999999999999998876655554   7889999999  68999999999999999998 55444433221100    


Q ss_pred             EeccCceecccccCCCeEEEEe-cCCC------eEEEEeCCCC
Q psy18018        547 LIYSQPLLCPHLQFNSRFVITS-SDDG------TVKLWDVKTG  582 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~~~~l~~~-~~d~------~v~iwd~~~~  582 (635)
                      ..|...|.+++|++++.++++. ..||      .+++|++.+.
T Consensus       237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            0133478999999999988653 3443      3999999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=1.1e-15  Score=146.87  Aligned_cols=262  Identities=13%  Similarity=0.130  Sum_probs=163.9

Q ss_pred             cEEEEec----CCCeEEEEEcc--CCceEEeeeCCCcceeEEEEe--CCEEEEEeCC----CcEEEEEccCC--cceeEE
Q psy18018        354 VHVVSGS----LDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELR--NNILVSGNAD----STVKVWDIVSG--TKKLMF  419 (635)
Q Consensus       354 ~~l~~~~----~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d----g~i~iwd~~~~--~~~~~~  419 (635)
                      .++++|+    .++.|.+|+++  +++.......+......++++  +++|++++.+    +.+.+|++...  +.....
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            4555653    45689998764  455433222266677778887  6688888875    79999998763  221111


Q ss_pred             E---------EEeeCCcEEEEEe-CCCcEEEEeCCCCceeeee------cc--------CCccEEEEEe--cCCEEEEE-
Q psy18018        420 R---------ICLFDGVHVVSGS-LDTSIRVWEAESGNLRHTL------MG--------HQSLTSGMEL--RNNILVSG-  472 (635)
Q Consensus       420 ~---------~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~------~~--------~~~~v~~~~~--~~~~l~s~-  472 (635)
                      .         ....+++++++++ .++.+.+|++.....+..+      .+        +...+.++.+  ++++++++ 
T Consensus        94 ~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A           94 TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence            1         1233788777776 5789999999754332211      11        1122355555  56655554 


Q ss_pred             eCCCcEEEEECCCCce------e------EEecCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeeeecc
Q psy18018        473 NADSTVKVWDIVSGQC------L------QTLSGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~------~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      ..++.|.+|++.....      +      .....  ........++|  +++++++++ .++.|.+|++.+++.......
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~  251 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV  251 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence            4588999998875431      1      11111  13344667777  688887777 689999999987654221111


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecCC--CeEEEEeCC--CCc--eEEeeeeccCCCCCceEEEEEeCCCCeE
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD--GTVKLWDVK--TGE--FIRNLVSLDSGGSGGVVWRIRASETKLV  611 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~v~iwd~~--~~~--~~~~~~~~~~~~~~~~i~~l~~s~d~~~  611 (635)
                      .  ..+    .+......++|+|||++|+++..+  +.|.+|++.  +++  .+..+.     . ...+..++|+|||++
T Consensus       252 ~--~~~----~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-----~-g~~~~~~~~spdg~~  319 (361)
T 3scy_A          252 A--ADT----VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-----T-GIHPRNFIITPNGKY  319 (361)
T ss_dssp             E--SCS----SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-----C-SSCCCEEEECTTSCE
T ss_pred             e--cCC----CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-----C-CCCCceEEECCCCCE
Confidence            0  000    112345789999999998776654  899999995  455  333331     2 456779999999998


Q ss_pred             EEEcc-CCCeeEeEEEEEeee
Q psy18018        612 CAVGS-RNGTEETKLLVLDFD  631 (635)
Q Consensus       612 l~~~~-~dg~~~~~l~~~d~~  631 (635)
                      |++++ .++.  +.+|.+|.+
T Consensus       320 l~~~~~~~~~--v~v~~~d~~  338 (361)
T 3scy_A          320 LLVACRDTNV--IQIFERDQA  338 (361)
T ss_dssp             EEEEETTTTE--EEEEEECTT
T ss_pred             EEEEECCCCC--EEEEEEECC
Confidence            88887 4555  667767653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=5.3e-16  Score=148.51  Aligned_cols=262  Identities=8%  Similarity=0.004  Sum_probs=180.6

Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccc--eeEEeeeccCCCEEE-EEeCCCcEEEEECCCCeEEEEEeCCC----
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQET--EVELSHGYALRSRIV-SGSDDNTLKVWSATTGKCLRTLIGHT----  223 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~----  223 (635)
                      ++..+++++.+++|.+||+.+++.+..+..+.  ........++++.++ +...++.|.+||+.+++.+..+..+.    
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~   89 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   89 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence            67788999999999999999998877665444  344444455666555 45578999999999999888776433    


Q ss_pred             --CCeEEEEe--eCCEEEEeeCc------------eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        224 --GGVWSSQM--AGNIIISGSTD------------RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       224 --~~v~~~~~--~~~~l~s~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                        ..+..+++  +++++++++.+            +.|.+||+.+......                             
T Consensus        90 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-----------------------------  140 (349)
T 1jmx_B           90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-----------------------------  140 (349)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-----------------------------
T ss_pred             ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce-----------------------------
Confidence              23666777  57789888866            8999999876321000                             


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                                                                     ............++++|+++ +++++.  .|.+
T Consensus       141 -----------------------------------------------~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~  170 (349)
T 1jmx_B          141 -----------------------------------------------VRTFPMPRQVYLMRAADDGS-LYVAGP--DIYK  170 (349)
T ss_dssp             -----------------------------------------------SEEEECCSSCCCEEECTTSC-EEEESS--SEEE
T ss_pred             -----------------------------------------------eeeccCCCcccceeECCCCc-EEEccC--cEEE
Confidence                                                           00000111344567999999 555543  4999


Q ss_pred             EEccCCceEEeeeCCCc------------------------ceeEEEEeC-------------CEEEEEeCCCcEEEEEc
Q psy18018        368 WEAESGNLRHTLMGHQS------------------------LTSGMELRN-------------NILVSGNADSTVKVWDI  410 (635)
Q Consensus       368 ~~~~~~~~~~~~~~~~~------------------------~v~~l~~~~-------------~~l~s~~~dg~i~iwd~  410 (635)
                      ||..+++.+..+..+..                        ....+++..             .++.....++.+.+|++
T Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (349)
T 1jmx_B          171 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF  250 (349)
T ss_dssp             ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred             EeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence            99999988777654320                        122233321             12224445677777777


Q ss_pred             cCCcceeEEEEEee-CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        411 VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       411 ~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~  487 (635)
                      ...........++| ++++++++  ++.|.+||+.+++.+..+.... .+.++++  ++++|++++.++.|++||+.+++
T Consensus       251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            65555555666889 99999888  8899999999998877776432 3445555  56677778889999999999999


Q ss_pred             eeEEecC
Q psy18018        488 CLQTLSG  494 (635)
Q Consensus       488 ~~~~~~~  494 (635)
                      .+..+..
T Consensus       328 ~~~~~~~  334 (349)
T 1jmx_B          328 KVKNIKL  334 (349)
T ss_dssp             EEEEEEC
T ss_pred             eeeeeec
Confidence            8888765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=1.3e-16  Score=152.84  Aligned_cols=234  Identities=9%  Similarity=0.049  Sum_probs=157.8

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      ++++++..+++++.++.|++||..+++.+..+..+. ..+..++++                               |++
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-------------------------------~dg   54 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-------------------------------PDN   54 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-------------------------------TTS
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC-------------------------------CCC
Confidence            466788889999999999999999998877776543 134444443                               455


Q ss_pred             cEEE-EEeCCCcEEEEeCCCCceeeeeccCC------ccEEEEEe--cCCEEEEEeCC------------CcEEEEECCC
Q psy18018        427 VHVV-SGSLDTSIRVWEAESGNLRHTLMGHQ------SLTSGMEL--RNNILVSGNAD------------STVKVWDIVS  485 (635)
Q Consensus       427 ~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~------~~v~~~~~--~~~~l~s~~~d------------g~i~iwd~~~  485 (635)
                      ++++ +...++.|.+||+.+++....+..+.      ..+.++.+  +++++++++.+            +.|.+||+.+
T Consensus        55 ~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           55 RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             CEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence            4433 33356677777777777666554322      12334444  67788888765            8999999988


Q ss_pred             Ccee---EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceec-------------------
Q psy18018        486 GQCL---QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL-------------------  541 (635)
Q Consensus       486 ~~~~---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------------  541 (635)
                      ++..   ..+.    +...+.++++  +++ +++++.  .|++||+.+++....+......                   
T Consensus       135 ~~~~~~~~~~~----~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (349)
T 1jmx_B          135 GLEAKPVRTFP----MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR  207 (349)
T ss_dssp             GGGBCCSEEEE----CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred             ccccceeeecc----CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcc
Confidence            5433   3333    2234666777  677 555543  4999999998877655432100                   


Q ss_pred             ----Cce----------------------------------eEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCC
Q psy18018        542 ----NPF----------------------------------YFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       542 ----~~~----------------------------------~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                          .+.                                  ....+...+..++|+| |+++++++  ++.|.+||+.++
T Consensus       208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred             eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence                000                                  0001123566788999 99999988  889999999999


Q ss_pred             ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        583 EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       583 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +.+..+.      ....+.+++|+|||++|++++.++.    |++||.+
T Consensus       286 ~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~----v~v~d~~  324 (349)
T 1jmx_B          286 KLIKAAN------LDHTYYCVAFDKKGDKLYLGGTFND----LAVFNPD  324 (349)
T ss_dssp             EEEEEEE------CSSCCCEEEECSSSSCEEEESBSSE----EEEEETT
T ss_pred             eEEEEEc------CCCCccceEECCCCCEEEEecCCCe----EEEEecc
Confidence            9887773      2234678999999998888888876    6666664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=5.6e-16  Score=159.19  Aligned_cols=179  Identities=13%  Similarity=0.122  Sum_probs=125.3

Q ss_pred             EEEEecCcE-EEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        347 FGFQFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       347 ~~~s~~~~~-l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                      .+++|+++. +++...++.+.+||+.+++.......+.   .++                               .++||
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~-------------------------------~~spD  160 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGF-------------------------------VSDIR  160 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEE-------------------------------EEEEE
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceE-------------------------------EECCC
Confidence            457887753 3333344455699988776544332211   222                               24578


Q ss_pred             CcEEEEEeCC----CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCC--cEEEEECCCCceeEEecCCCc
Q psy18018        426 GVHVVSGSLD----TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADS--TVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       426 ~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      |+++++++.+    +.|++||+.+++.. .+..|...+..++|  +++.|+++..++  .|++||+.+++.. .+..   
T Consensus       161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~---  235 (582)
T 3o4h_A          161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL---  235 (582)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC---
T ss_pred             CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC---
Confidence            8888877666    67999999887764 66778888887777  567888888888  8999999988876 5554   


Q ss_pred             ccccEEEEE--------e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        498 HQSAVTCLQ--------F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       498 ~~~~v~~~~--------~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                      +...+..++        |  ||.++++++.|+.+++|++  ++....              ....+.+++|+ |++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--------------~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--------------PQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--------------CSSEEEEEEEE-TTEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--------------CCCceEEEEec-CCEEEEE
Confidence            444443333        5  7889999999999999999  543321              13467789999 9999999


Q ss_pred             ecCCC---eEEEEeCCC
Q psy18018        568 SSDDG---TVKLWDVKT  581 (635)
Q Consensus       568 ~~~d~---~v~iwd~~~  581 (635)
                      ++.+.   .+.+||..+
T Consensus       299 ~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          299 HTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEETTEEEEEEEETTCC
T ss_pred             EcCCCCCCeEEEEcCCC
Confidence            88774   477777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=1e-16  Score=169.30  Aligned_cols=340  Identities=10%  Similarity=0.034  Sum_probs=201.9

Q ss_pred             eccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC---CeEEEEe--eCCEEEEeeC---------ceeEEEeccccee
Q psy18018        189 GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG---GVWSSQM--AGNIIISGST---------DRTLKGWSNAERI  254 (635)
Q Consensus       189 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~--~~~~l~s~~~---------dg~i~~w~~~~~~  254 (635)
                      .+.++..++..+.|+.|++||+.+++....+.+|..   .+.+++|  +|++|++++.         ++.|++||+.++.
T Consensus        22 ~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~  101 (719)
T 1z68_A           22 NWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE  101 (719)
T ss_dssp             EESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             EECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence            344444667677899999999999998777765543   3778888  5888988876         7999999987653


Q ss_pred             eeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhh
Q psy18018        255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT  334 (635)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (635)
                      .....                                                                           
T Consensus       102 ~~~~~---------------------------------------------------------------------------  106 (719)
T 1z68_A          102 FVRGN---------------------------------------------------------------------------  106 (719)
T ss_dssp             ECCSS---------------------------------------------------------------------------
T ss_pred             cccce---------------------------------------------------------------------------
Confidence            21000                                                                           


Q ss_pred             hccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee-eCCCcce-----------------eEEEEe--CC
Q psy18018        335 LHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLT-----------------SGMELR--NN  394 (635)
Q Consensus       335 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~~v-----------------~~l~~~--~~  394 (635)
                          .........+|||||+.|+.+. ++.|++|++.+++..... .++...+                 .+++|+  ++
T Consensus       107 ----~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~  181 (719)
T 1z68_A          107 ----ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK  181 (719)
T ss_dssp             ----CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS
T ss_pred             ----ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC
Confidence                0001233467999999999886 679999999888765432 2222212                 467786  56


Q ss_pred             EEEEEeCC-CcEEEEEccC---CcceeEEEEE-eeCCcEEEEEeCCCcEEEEeCCCCcee--------eeeccCCccEEE
Q psy18018        395 ILVSGNAD-STVKVWDIVS---GTKKLMFRIC-LFDGVHVVSGSLDTSIRVWEAESGNLR--------HTLMGHQSLTSG  461 (635)
Q Consensus       395 ~l~s~~~d-g~i~iwd~~~---~~~~~~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~--------~~~~~~~~~v~~  461 (635)
                      .|++++.| +.+.+|.+..   .......... ...|.    ......|++||+.+++..        ..+.+|...+..
T Consensus       182 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          182 FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA----KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS----CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC----CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence            77777654 4444443321   1111111111 11111    012337899999987653        223467778888


Q ss_pred             EEec--CCEEEEEeCC----CcEEEEE----CCCCceeEEe----cCCCcccccEE-----EEEe--cCCEEEE--EeCC
Q psy18018        462 MELR--NNILVSGNAD----STVKVWD----IVSGQCLQTL----SGRNKHQSAVT-----CLQF--NSRFVIT--SSDD  518 (635)
Q Consensus       462 ~~~~--~~~l~s~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~~~~v~-----~~~~--~~~~l~~--~~~d  518 (635)
                      ++|+  ++++++....    ..|.+||    ..+++....+    ..   +...+.     .+.|  ||+.++.  ...+
T Consensus       258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES---RTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC---SSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc---CCceEccccCCccEECCCCCeEEEEEEccC
Confidence            8885  4455554332    2488899    7777655444    22   333333     4455  7775544  4455


Q ss_pred             C--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC-----CCeEEEEeCCC--Cc-eEEee
Q psy18018        519 G--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD-----DGTVKLWDVKT--GE-FIRNL  588 (635)
Q Consensus       519 ~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~v~iwd~~~--~~-~~~~~  588 (635)
                      |  .|.+||+.+++. ..+..           +...+..+.++ +++.|+..+.     ++..++|.+..  +. ....+
T Consensus       335 g~~~l~~~~~~~~~~-~~lt~-----------~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l  401 (719)
T 1z68_A          335 GYKHIHYIKDTVENA-IQITS-----------GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV  401 (719)
T ss_dssp             SCEEEEEESSCSTTC-EECSC-----------SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred             CceEEEEEECCCCce-Eeccc-----------CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence            5  577777776652 22221           23345566666 7766665554     48889998764  42 12333


Q ss_pred             eeccCCCCCceEEEEEeCCCCeEEEE-ccCCCeeEeEEEEEeee
Q psy18018        589 VSLDSGGSGGVVWRIRASETKLVCAV-GSRNGTEETKLLVLDFD  631 (635)
Q Consensus       589 ~~~~~~~~~~~i~~l~~s~d~~~l~~-~~~dg~~~~~l~~~d~~  631 (635)
                      .. ...++...+..+.|+||+++|+. ++.....  .++.+|.+
T Consensus       402 ~~-~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p--~~~l~d~~  442 (719)
T 1z68_A          402 TC-HLRKERCQYYTASFSDYAKYYALVCYGPGIP--ISTLHDGR  442 (719)
T ss_dssp             ST-TTTTTTBCBEEEEECGGGSSEEEEECCBSSC--EEEEECSS
T ss_pred             cC-ccCCCCCceEEEEECCCCCEEEEEcCCCCCC--eEEEEECC
Confidence            11 00125567889999999997774 4444433  24555553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.73  E-value=2.9e-15  Score=143.03  Aligned_cols=234  Identities=13%  Similarity=0.194  Sum_probs=151.1

Q ss_pred             CceEEEEecCcEEEEecC---CCeEEEEEccCCc--eEEeeeCCCcceeEEEEe--CCEEEEEe-CCCcEEEEEccCC-c
Q psy18018        344 PDLFGFQFDGVHVVSGSL---DTSIRVWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGN-ADSTVKVWDIVSG-T  414 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~---dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~-~  414 (635)
                      +..++++|+|+ +++++.   ++.|.+|++.+++  .+..+..+...+..++++  +++|++++ .++.+.+|++... .
T Consensus        42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~  120 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA  120 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC
T ss_pred             cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC
Confidence            34567899998 555543   6899999997665  344445567778888887  56777777 7789999998632 2


Q ss_pred             ce--------------------eEEEEEeeCCcEEEEEeCCCcEEEEeCC-CCceee--eeccCC-ccEEEEEe--cCCE
Q psy18018        415 KK--------------------LMFRICLFDGVHVVSGSLDTSIRVWEAE-SGNLRH--TLMGHQ-SLTSGMEL--RNNI  468 (635)
Q Consensus       415 ~~--------------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~-~~v~~~~~--~~~~  468 (635)
                      ..                    .....++|+|+.+++...++.|.+|++. ++++..  .+..+. .....+.+  ++++
T Consensus       121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~  200 (347)
T 3hfq_A          121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY  200 (347)
T ss_dssp             EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence            11                    1124578899966666678899999998 554432  222222 24555665  5665


Q ss_pred             EE-EEeCCCcEEEEECCC--Cce--eEEecCCCc---ccccEEEEEe--cCCEE-EEEeCCCcEEEEECCCCceeeeecc
Q psy18018        469 LV-SGNADSTVKVWDIVS--GQC--LQTLSGRNK---HQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       469 l~-s~~~dg~i~iwd~~~--~~~--~~~~~~~~~---~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      ++ +...++.+.+|++..  ++.  +..+.....   ....+..++|  ||++| ++...++.|.+|++........+..
T Consensus       201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            54 456788999999874  442  222222110   1134677777  68877 5556689999999974321111110


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecC-CCeEEEE--eCCCCceEE
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD-DGTVKLW--DVKTGEFIR  586 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iw--d~~~~~~~~  586 (635)
                              ...+...+..++|+|||++|++++. ++.|.+|  |.++|+...
T Consensus       281 --------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          281 --------ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             --------EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             --------EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence                    1113445788999999998888775 4899999  656777543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=1.5e-15  Score=147.65  Aligned_cols=273  Identities=11%  Similarity=0.043  Sum_probs=177.6

Q ss_pred             EEEEecCcEEEEecC-CC--eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE-
Q psy18018        347 FGFQFDGVHVVSGSL-DT--SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR-  420 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~-dg--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  420 (635)
                      .+|+|||++|+.++. ++  .|.+||+.+++......++...+....|+  ++.|+.++.++.+.+||+.+++...... 
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            359999999988887 66  48888999888877777776666556676  6789999999999999999887553322 


Q ss_pred             ----------EEeeCCcEEEEE----------------------eCCCcEEEEeCCCCceeeeeccCCccEEEEEec---
Q psy18018        421 ----------ICLFDGVHVVSG----------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---  465 (635)
Q Consensus       421 ----------~~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---  465 (635)
                                ..++++..++..                      ..+..|.+||+.+++... +..+...+..+.++   
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCC
Confidence                      246788887743                      244689999999886544 44455566666654   


Q ss_pred             CCEEEEEeCC------CcEEEEECCCCceeEEecCCCccc--ccEEEEEe--cCCEEEEEeC-CC----cEEEEECCCCc
Q psy18018        466 NNILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQ--SAVTCLQF--NSRFVITSSD-DG----TVKLWDVKTGE  530 (635)
Q Consensus       466 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~-d~----~i~vwd~~~~~  530 (635)
                      ++.++....+      ..|.++|...++. ..+..   +.  ..+...+|  ||+.|+..+. ++    .|++||+.+++
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT---HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC---CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee---CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            4567666653      3788888775543 33332   22  34666667  6887755443 22    39999999987


Q ss_pred             eeeeeccceecCceeEEeccCceecccccCCCeEEEEe---------cCCCeEEEEeCCCCceEEeeeeccCC------C
Q psy18018        531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS---------SDDGTVKLWDVKTGEFIRNLVSLDSG------G  595 (635)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---------~~d~~v~iwd~~~~~~~~~~~~~~~~------~  595 (635)
                      .........    ..  .........+|+|||+.|+..         ..+..|++||+.+++.. .+......      .
T Consensus       276 ~~~l~~~~~----~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~  348 (388)
T 3pe7_A          276 NRQLTSMPA----CS--HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGD  348 (388)
T ss_dssp             EEEEEEECC----EE--EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTB
T ss_pred             eEEEEcCCC----ce--eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccc
Confidence            432211110    00  000112335799999988854         45678999999987753 34221000      0


Q ss_pred             CCceEEEEEeCCCCeEEEEcc-CCCeeEeEEEEEeeecC
Q psy18018        596 SGGVVWRIRASETKLVCAVGS-RNGTEETKLLVLDFDVD  633 (635)
Q Consensus       596 ~~~~i~~l~~s~d~~~l~~~~-~dg~~~~~l~~~d~~~~  633 (635)
                      ....+.+++|+|||+.|+..+ .+|.  ..||.+|+...
T Consensus       349 ~~~~~~~~~~spDg~~l~~~s~~~g~--~~l~~~~l~~~  385 (388)
T 3pe7_A          349 RQVTHPHPSFTPDDKQILFTSDVHGK--PALYLATLPES  385 (388)
T ss_dssp             SSTTCCCCEECTTSSEEEEEECTTSS--CEEEEEECCGG
T ss_pred             cccCCCCccCCCCCCEEEEEecCCCc--eeEEEEECChh
Confidence            001467889999999877665 4565  67899887653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=3.3e-16  Score=165.44  Aligned_cols=268  Identities=10%  Similarity=0.070  Sum_probs=180.0

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc---ceeEEEEe--CCEEEEEeC---------CCcEEEEEcc
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGNA---------DSTVKVWDIV  411 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~v~~l~~~--~~~l~s~~~---------dg~i~iwd~~  411 (635)
                      ..+|+|++++++++ .++.|++||..+++....+..|..   .+.+++|+  ++.|+.++.         ++.+++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            46799999655554 689999999999988777766544   38889997  668888766         7899999998


Q ss_pred             CCcc---e-----eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccE-----------------EEEEe-
Q psy18018        412 SGTK---K-----LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLT-----------------SGMEL-  464 (635)
Q Consensus       412 ~~~~---~-----~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v-----------------~~~~~-  464 (635)
                      +++.   .     .....++|||+.|+.+. ++.|++|++.+++..+.. .++...+                 .++.| 
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            8765   2     22346899999999985 789999999888765432 2332211                 24444 


Q ss_pred             -cCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EEecC---CCcccccEEE
Q psy18018        465 -RNNILVSGNADS----------------------------------TVKVWDIVSGQCL--QTLSG---RNKHQSAVTC  504 (635)
Q Consensus       465 -~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~--~~~~~---~~~~~~~v~~  504 (635)
                       +++.|++++.|.                                  .|++||+.+++..  ..+..   ...+...+..
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence             678898887552                                  7889999887643  12211   0126677888


Q ss_pred             EEe--cCCEEEEEeCC----CcEEEEE----CCCCceeeeeccceecCceeEEeccCcee-----cccccCCCeEEEE--
Q psy18018        505 LQF--NSRFVITSSDD----GTVKLWD----VKTGEFSTPLMSSFILNPFYFLIYSQPLL-----CPHLQFNSRFVIT--  567 (635)
Q Consensus       505 ~~~--~~~~l~~~~~d----~~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~--  567 (635)
                      ++|  |++++++....    ..|.+||    +.+++.......       ....+...+.     .++|+|||+.|+.  
T Consensus       258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  330 (719)
T 1z68_A          258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH-------IEESRTGWAGGFFVSTPVFSYDAISYYKIF  330 (719)
T ss_dssp             EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE-------EEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred             eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec-------ccccCCceEccccCCccEECCCCCeEEEEE
Confidence            888  66666664433    2488899    777664433210       0012344455     7899999996554  


Q ss_pred             ecCCC--eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC-----CeeEeEEEEEeee
Q psy18018        568 SSDDG--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN-----GTEETKLLVLDFD  631 (635)
Q Consensus       568 ~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d-----g~~~~~l~~~d~~  631 (635)
                      ...+|  .|.+||+.+++. ..+     ..+...+..+.++ |++.|+..+.+     +.  .+||.++.+
T Consensus       331 ~~~~g~~~l~~~~~~~~~~-~~l-----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~--~~l~~~~~~  392 (719)
T 1z68_A          331 SDKDGYKHIHYIKDTVENA-IQI-----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR--RNIYRISIG  392 (719)
T ss_dssp             ECTTSCEEEEEESSCSTTC-EEC-----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC--BEEEEEECS
T ss_pred             EccCCceEEEEEECCCCce-Eec-----ccCceEEEEEEEE-eCCEEEEEEecCCCCCce--EEEEEEeCC
Confidence            44555  577888887773 344     2344557777777 77766655544     54  678888873

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=1.9e-14  Score=137.17  Aligned_cols=281  Identities=11%  Similarity=0.067  Sum_probs=188.2

Q ss_pred             cCCEEEEEe------CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC----------CCcEEEEECCCCe
Q psy18018        151 DGKLVVSGA------YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD----------DNTLKVWSATTGK  214 (635)
Q Consensus       151 ~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~  214 (635)
                      ++++++...      .|+.|.+||..+++.+..+...... .....+++.+++++..          ++.|.+||..+++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            555555543      4789999999999887776655544 5556667778888763          5678888888777


Q ss_pred             EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceee
Q psy18018        215 CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELAL  294 (635)
Q Consensus       215 ~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (635)
                      .+.++......                                                                     
T Consensus        93 ~~~~i~~~~~~---------------------------------------------------------------------  103 (361)
T 2oiz_A           93 FEKEISLPPKR---------------------------------------------------------------------  103 (361)
T ss_dssp             EEEEEEECTTB---------------------------------------------------------------------
T ss_pred             EEEEEEcCccc---------------------------------------------------------------------
Confidence            77665421100                                                                     


Q ss_pred             EEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC--CCeEEEEEccC
Q psy18018        295 YVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL--DTSIRVWEAES  372 (635)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~v~~~~~  372 (635)
                                                                 ......+..++++|+|++|+++..  ++.|.+||+.+
T Consensus       104 -------------------------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A          104 -------------------------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             -------------------------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             -------------------------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence                                                       001122334669999999998864  57899999999


Q ss_pred             CceEEe-eeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccC-CcceeEEE--------------EEeeCCcEEEEEe
Q psy18018        373 GNLRHT-LMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVS-GTKKLMFR--------------ICLFDGVHVVSGS  433 (635)
Q Consensus       373 ~~~~~~-~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--------------~~~~~~~~l~~~~  433 (635)
                      ++.+.. +.....  ..+.+.   +..+++.+.||.+..|+... ++......              ..++++..++..+
T Consensus       141 ~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  218 (361)
T 2oiz_A          141 GDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS  218 (361)
T ss_dssp             TEEEEEEGGGTTE--EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB
T ss_pred             CcEEEEEecCCCc--ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe
Confidence            988776 543221  112222   35778888999999998865 33221111              1346677778888


Q ss_pred             CCCcEEEEeCCCCce--eeeecc------------CCccEEEEEecCCEEEEEeC-----------CCcEEEEECCCCce
Q psy18018        434 LDTSIRVWEAESGNL--RHTLMG------------HQSLTSGMELRNNILVSGNA-----------DSTVKVWDIVSGQC  488 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~--~~~~~~------------~~~~v~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~  488 (635)
                      .++.+.++|+.....  ...+..            ......++..+++.++++..           .+.|.+||+.+++.
T Consensus       219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~  298 (361)
T 2oiz_A          219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR  298 (361)
T ss_dssp             TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred             CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence            899999999875532  122110            11112355566676665543           34799999999999


Q ss_pred             eEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC--ceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        489 LQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG--EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       489 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      +..+..   +.  +.++++  ++++|++++. +.|.+||..++  +.+..+..           .......++++|||+
T Consensus       299 v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~-----------~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          299 VARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG-----------AAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT-----------SCSSEEEEEECCCSC
T ss_pred             EEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc-----------CCCCcEEEEecCCCC
Confidence            999886   33  666777  7899998887 99999999999  87766532           244556788899885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=9.4e-15  Score=140.22  Aligned_cols=268  Identities=11%  Similarity=0.070  Sum_probs=164.8

Q ss_pred             EEEEecCC--CeEEEEEc--cCCceEE--eee-CCCcceeEEEEe--CCEEEEEeCCCcEEEEEcc-CCcceeEEE----
Q psy18018        355 HVVSGSLD--TSIRVWEA--ESGNLRH--TLM-GHQSLTSGMELR--NNILVSGNADSTVKVWDIV-SGTKKLMFR----  420 (635)
Q Consensus       355 ~l~~~~~d--g~i~v~~~--~~~~~~~--~~~-~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~-~~~~~~~~~----  420 (635)
                      .+++|+..  +.|.+|++  .+++...  ... .....+..++++  +++|++++.+ .+.+|++. +++......    
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35555543  56888765  4554422  121 233467788887  6688888887 99999997 665433222    


Q ss_pred             ------EEeeCCcE--EEEEe-------------CCCcEEEEeCC-CCceeeeec----cCCccEEEEEe--cCCEEEEE
Q psy18018        421 ------ICLFDGVH--VVSGS-------------LDTSIRVWEAE-SGNLRHTLM----GHQSLTSGMEL--RNNILVSG  472 (635)
Q Consensus       421 ------~~~~~~~~--l~~~~-------------~d~~i~~~d~~-~~~~~~~~~----~~~~~v~~~~~--~~~~l~s~  472 (635)
                            .++|+|++  ++++.             .++.+.+|++. +++....+.    .+...+.++.+  ++++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence                  14678884  44543             68999999997 466554443    24456777776  46677766


Q ss_pred             e-CCCcEEEEECC-CCcee--EEecCCCcccccEEEEEe--cCCEEEEEeC-CCcEEEEECC--CCceeeeeccceecCc
Q psy18018        473 N-ADSTVKVWDIV-SGQCL--QTLSGRNKHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVK--TGEFSTPLMSSFILNP  543 (635)
Q Consensus       473 ~-~dg~i~iwd~~-~~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~--~~~~~~~~~~~~~~~~  543 (635)
                      + .++.|++||+. +++..  ..+... .+...+..++|  +|+++++++. ++.|.+|++.  +++....... ....+
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~  240 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-FPLIP  240 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-EESSC
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecC-CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce-EEcCC
Confidence            5 46899999998 66643  223210 12345777777  6888887775 6899999875  4553211000 00000


Q ss_pred             eeEEeccC------ceeccc-ccCCCeEEEEecCCC------eEEEEeCC-CCceEEeeeeccCCCCCceEEEEEeCC--
Q psy18018        544 FYFLIYSQ------PLLCPH-LQFNSRFVITSSDDG------TVKLWDVK-TGEFIRNLVSLDSGGSGGVVWRIRASE--  607 (635)
Q Consensus       544 ~~~~~~~~------~v~~~~-~s~~~~~l~~~~~d~------~v~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~--  607 (635)
                      .....+..      .+..++ |+|||++|++++.+.      .|.+|++. +++........  ..+...+..++|+|  
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~--~~~~~~~~~~a~sp~~  318 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--PTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--ECSSCCTTCCCEEECT
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--ecCCCCcccceecCCC
Confidence            00001121      477899 999999888765432      89999996 66654321101  12333456789999  


Q ss_pred             -CCeEEEEccCC-CeeEeEEEEEe
Q psy18018        608 -TKLVCAVGSRN-GTEETKLLVLD  629 (635)
Q Consensus       608 -d~~~l~~~~~d-g~~~~~l~~~d  629 (635)
                       ||++|++++.+ +.  +++|.+|
T Consensus       319 ~dg~~l~v~~~~~~~--v~v~~~~  340 (365)
T 1jof_A          319 WSDEWMAITDDQEGW--LEIYRWK  340 (365)
T ss_dssp             TCTTEEEEECSSSCE--EEEEEEE
T ss_pred             cCCCEEEEEEcCCCe--EEEEEEc
Confidence             89999998875 55  5566554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.68  E-value=1.3e-14  Score=152.98  Aligned_cols=118  Identities=8%  Similarity=0.046  Sum_probs=86.7

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceE----EEEEEc--CCEEEEeeCCCcE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVI----TCLQFS--GSRIVSGSDDNTL  103 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi----~~~~~s--~~~l~s~~~d~~v  103 (635)
                      ..++|+    |||++++++  ++        .+.+||..+++....+.+|.....    ..++||  |++|+.++.++.+
T Consensus        20 ~~~~w~----~dg~~~~~~--~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~   85 (740)
T 4a5s_A           20 YSLRWI----SDHEYLYKQ--EN--------NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ   85 (740)
T ss_dssp             CCEEEC----SSSEEEEEE--TT--------EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred             cccEEC----CCCcEEEEc--CC--------cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee
Confidence            578999    999999986  32        344699999998888888875431    236778  9999998876432


Q ss_pred             EEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccce
Q psy18018        104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECL  175 (635)
Q Consensus       104 ~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~  175 (635)
                        |..          +..+.+.+||+++++.. .+..|.+.+...+|  ||+.||.+. |+.|.+|++.+++..
T Consensus        86 --~r~----------~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A           86 --WRH----------SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY  145 (740)
T ss_dssp             --SSS----------CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             --EEE----------ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence              211          11244666777776644 46678888999999  999999884 789999999887644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=6.7e-13  Score=132.75  Aligned_cols=316  Identities=10%  Similarity=0.029  Sum_probs=210.8

Q ss_pred             cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECC--CCeEEEEEeCCCCCeEE
Q psy18018        151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSAT--TGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~  228 (635)
                      .+..+++...+++|.++|..+++.+..+............+++.++++++.++.|.+||+.  +++.+.++.....    
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~----  241 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE----  241 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE----
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC----
Confidence            4456777788999999999999988877766555566667778899999999999999985  6666655542111    


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (567)
T 1qks_A          242 --------------------------------------------------------------------------------  241 (567)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE----ecCcEEEEecC-CCeEEEEEccCCceEEeeeCC-
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ----FDGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH-  382 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~-  382 (635)
                                                         +..++++    |||+++++++. ++.|.++|..+.+.+..+... 
T Consensus       242 -----------------------------------P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          242 -----------------------------------ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             -----------------------------------EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             -----------------------------------CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence                                               1123477    58887776655 488889998888877765432 


Q ss_pred             ----------CcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeE----------EEEEeeCCcEEEEEe-CCCcE
Q psy18018        383 ----------QSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLM----------FRICLFDGVHVVSGS-LDTSI  438 (635)
Q Consensus       383 ----------~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~l~~~~-~d~~i  438 (635)
                                ...+..+..+   +.+++....+|.|.++|....+....          -..+++++++++++. .++.|
T Consensus       287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V  366 (567)
T 1qks_A          287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL  366 (567)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeE
Confidence                      1145666655   34666667779999999876532222          124788999987765 57899


Q ss_pred             EEEeCCCCceeeeecc-----CCccEEEE-EecCC-EEEEEe-CCCcEEEEECCC-------CceeEEecCCCcccccEE
Q psy18018        439 RVWEAESGNLRHTLMG-----HQSLTSGM-ELRNN-ILVSGN-ADSTVKVWDIVS-------GQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       439 ~~~d~~~~~~~~~~~~-----~~~~v~~~-~~~~~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~v~  503 (635)
                      .++|+.++++...+..     |.+.-..+ .+++. ..++.. .++.|.++|..+       .+.++.+.........| 
T Consensus       367 ~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i-  445 (567)
T 1qks_A          367 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI-  445 (567)
T ss_dssp             EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE-
T ss_pred             EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE-
Confidence            9999999988776654     43322223 33333 444443 568999999987       56777776521111112 


Q ss_pred             EEEecCCEEEEEeC-------CCcEEEEECCCCce-----e-eeeccceecCceeEEeccCceecccccCCCeEEEEec-
Q psy18018        504 CLQFNSRFVITSSD-------DGTVKLWDVKTGEF-----S-TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-  569 (635)
Q Consensus       504 ~~~~~~~~l~~~~~-------d~~i~vwd~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  569 (635)
                      ....+++++.+...       .+.|.++|+.+.+.     . ..+....... +  ..-...+..+.|+|+|+++..+. 
T Consensus       446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~G~~~~~s~~  522 (567)
T 1qks_A          446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG-I--TEGQPRVVQGEFNKDGTEVWFSVW  522 (567)
T ss_dssp             ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT-C--CSSCCEEEEEEECTTSSEEEEEEE
T ss_pred             EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc-c--CCCCcceEeeeECCCCCEEEEEee
Confidence            23447888887663       35899999987621     1 1111000000 0  00134678899999999877763 


Q ss_pred             ----CCCeEEEEeCCCCceEEeee
Q psy18018        570 ----DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       570 ----~d~~v~iwd~~~~~~~~~~~  589 (635)
                          .++.|.|+|.++++++..+.
T Consensus       523 ~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          523 NGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cCCCCCCcEEEEECCCceEEEEeC
Confidence                37999999999999988884

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.66  E-value=2.4e-13  Score=131.15  Aligned_cols=298  Identities=12%  Similarity=0.083  Sum_probs=204.4

Q ss_pred             ecCCEEEEEeCCCeEEEEeCCCccceeeccccc---------eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy18018        150 YDGKLVVSGAYDYMVKIWNPDTEECLHAELQET---------EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI  220 (635)
Q Consensus       150 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  220 (635)
                      .++..++.++.++.|..+|..+++.+.......         ..........++.+++++.++.|..+|..+|+.+....
T Consensus        51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            367888888889999999999998877655421         11222223457889999999999999999999988776


Q ss_pred             CCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018        221 GHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL  300 (635)
Q Consensus       221 ~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (635)
                      ............+..++.++.++.+..+|..++.........                                      
T Consensus       131 ~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--------------------------------------  172 (376)
T 3q7m_A          131 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLD--------------------------------------  172 (376)
T ss_dssp             CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC--------------------------------------
T ss_pred             CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--------------------------------------
Confidence            544333333446788899999999999998765432211000                                      


Q ss_pred             CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee
Q psy18018        301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM  380 (635)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~  380 (635)
                                          ...             ........    ....+..+++++.++.+..+|..+++.+....
T Consensus       173 --------------------~~~-------------~~~~~~~~----~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          173 --------------------MPS-------------LSLRGESA----PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             --------------------C------------------CCCCC----CEEETTEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred             --------------------CCc-------------eeecCCCC----cEEECCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence                                000             00000000    01124567888889999999999999887765


Q ss_pred             CCCc-----------ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE-----EEeeCCcEEEEEeCCCcEEEEeCC
Q psy18018        381 GHQS-----------LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR-----ICLFDGVHVVSGSLDTSIRVWEAE  444 (635)
Q Consensus       381 ~~~~-----------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~l~~~~~d~~i~~~d~~  444 (635)
                      ....           ........++.++.++.++.+..+|..+++......     ....++..++.++.++.+..+|..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~  295 (376)
T 3q7m_A          216 ISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTID  295 (376)
T ss_dssp             CCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETT
T ss_pred             cccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECC
Confidence            3321           011223347788888899999999998887654332     233457788888999999999999


Q ss_pred             CCceeeeecc-CCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE-EEEEecCCEEEEEeCCCcEE
Q psy18018        445 SGNLRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV-TCLQFNSRFVITSSDDGTVK  522 (635)
Q Consensus       445 ~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~d~~i~  522 (635)
                      +++....... ...........++.++.++.+|.+..+|..+++.+......   ...+ ......+..|+.++.+|.|+
T Consensus       296 tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~---~~~~~~~~~~~~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          296 GGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVD---SSGFQTEPVAADGKLLIQAKDGTVY  372 (376)
T ss_dssp             TCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC---TTCBCSCCEEETTEEEEEBTTSCEE
T ss_pred             CCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecC---CCcceeCCEEECCEEEEEeCCCEEE
Confidence            9998877662 22333344556788999999999999999999988777641   1222 12233567888899999999


Q ss_pred             EEE
Q psy18018        523 LWD  525 (635)
Q Consensus       523 vwd  525 (635)
                      .|+
T Consensus       373 ~~~  375 (376)
T 3q7m_A          373 SIT  375 (376)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            987

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.66  E-value=3.9e-13  Score=128.93  Aligned_cols=197  Identities=10%  Similarity=0.099  Sum_probs=121.3

Q ss_pred             EEEEecCcE--EEEec-------------CCCeEEEEEcc-CCceEEeeeC----CCcceeEEEEeCCEEEEEeCCCcEE
Q psy18018        347 FGFQFDGVH--VVSGS-------------LDTSIRVWEAE-SGNLRHTLMG----HQSLTSGMELRNNILVSGNADSTVK  406 (635)
Q Consensus       347 ~~~s~~~~~--l~~~~-------------~dg~i~v~~~~-~~~~~~~~~~----~~~~v~~l~~~~~~l~s~~~dg~i~  406 (635)
                      ++++|+|++  ++++.             .+|.+.+|++. +++....+..    +...+.+++                
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------------  151 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV----------------  151 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE----------------
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE----------------
Confidence            457888884  44553             68899999987 4554333221    222333333                


Q ss_pred             EEEccCCcceeEEEEEeeCCcEEEEEeC-CCcEEEEeCC-CCcee--eeec--cCCccEEEEEe--cCCEEEEEeC-CCc
Q psy18018        407 VWDIVSGTKKLMFRICLFDGVHVVSGSL-DTSIRVWEAE-SGNLR--HTLM--GHQSLTSGMEL--RNNILVSGNA-DST  477 (635)
Q Consensus       407 iwd~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~--~~~~~v~~~~~--~~~~l~s~~~-dg~  477 (635)
                                     ++|+|++++++.. ++.|++|++. +++..  ..+.  .|...+..+.+  +++++++++. ++.
T Consensus       152 ---------------~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~  216 (365)
T 1jof_A          152 ---------------FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR  216 (365)
T ss_dssp             ---------------ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ---------------ECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe
Confidence                           4567776666553 5678888887 56543  2332  23455666666  5667777664 789


Q ss_pred             EEEEECC--CCcee---EEecCCC----cccc------cEEEEE-e--cCCEEEEEeCCC------cEEEEECC-CCcee
Q psy18018        478 VKVWDIV--SGQCL---QTLSGRN----KHQS------AVTCLQ-F--NSRFVITSSDDG------TVKLWDVK-TGEFS  532 (635)
Q Consensus       478 i~iwd~~--~~~~~---~~~~~~~----~~~~------~v~~~~-~--~~~~l~~~~~d~------~i~vwd~~-~~~~~  532 (635)
                      |.+|++.  +++..   ..+....    .+..      .+..++ +  ||++|++++.+.      .|.+|++. +++..
T Consensus       217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            9999765  45542   1222111    1221      467777 6  788887776432      89999996 55533


Q ss_pred             eeeccceecCceeEEeccCceecccccC---CCeEEEEecCC-CeEEEEeCCCC
Q psy18018        533 TPLMSSFILNPFYFLIYSQPLLCPHLQF---NSRFVITSSDD-GTVKLWDVKTG  582 (635)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-~~v~iwd~~~~  582 (635)
                      .....        ...+......++|+|   ||++|++++.+ +.|.+|++...
T Consensus       297 ~~~~~--------~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          297 KQLFL--------SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEE--------EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             Eeeee--------eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            21100        001234567899999   89999998864 89999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=8.1e-14  Score=131.38  Aligned_cols=244  Identities=14%  Similarity=0.143  Sum_probs=157.9

Q ss_pred             CCCceEEEEecCcEEEEecCCC------------------------eEEEEEccCCceEEeee-CCCcceeEEEEeCCEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDT------------------------SIRVWEAESGNLRHTLM-GHQSLTSGMELRNNIL  396 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg------------------------~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l  396 (635)
                      ..+..++++|+|+.+++...++                        .|.+||..+++.+..+. .+-.....++      
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia------   97 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS------   97 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE------
Confidence            4556788999999988887774                        45555554444433322 1112233333      


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc-eeeee---------ccCCccEEEEEec-
Q psy18018        397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN-LRHTL---------MGHQSLTSGMELR-  465 (635)
Q Consensus       397 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~---------~~~~~~v~~~~~~-  465 (635)
                                               ++++|+.+++...++.|+.|+..... .+..+         .++.....+++++ 
T Consensus        98 -------------------------~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~  152 (329)
T 3fvz_A           98 -------------------------IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP  152 (329)
T ss_dssp             -------------------------ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT
T ss_pred             -------------------------ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC
Confidence                                     34556655555566677777764331 33333         2344466777775 


Q ss_pred             --CCEEEEEe-CCCcEEEEECCCCceeEEecCCC-------cccccEEEEEe--c-CCEEEEEeCCCcEEEEECCCCcee
Q psy18018        466 --NNILVSGN-ADSTVKVWDIVSGQCLQTLSGRN-------KHQSAVTCLQF--N-SRFVITSSDDGTVKLWDVKTGEFS  532 (635)
Q Consensus       466 --~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~--~-~~~l~~~~~d~~i~vwd~~~~~~~  532 (635)
                        ++++++.+ .++.|++|+ .+++.+..+....       .+......+++  + +.++++...++.|++|+..+++.+
T Consensus       153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence              44666665 689999999 5677777664211       12234677888  4 667777778899999999988877


Q ss_pred             eeeccceecCceeEEeccCceecccccC------CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        533 TPLMSSFILNPFYFLIYSQPLLCPHLQF------NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      ..+...         .+...+..++|+|      +++..++...+..|++||+.+++.+..+...  .++......|+++
T Consensus       232 ~~~~~~---------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~  300 (329)
T 3fvz_A          232 REIKHA---------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVAS  300 (329)
T ss_dssp             EEECCT---------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEEC
T ss_pred             EEEecc---------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEEC
Confidence            766432         1344566777888      4443333344568999999999998877321  2455678999999


Q ss_pred             CCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        607 ETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |||.++++...++.    |+.|+++.
T Consensus       301 ~dG~lyvad~~~~~----I~~~~~~~  322 (329)
T 3fvz_A          301 EDGTVYIGDAHTNT----VWKFTLTE  322 (329)
T ss_dssp             TTSEEEEEESSSCC----EEEEEEEE
T ss_pred             CCCCEEEEECCCCE----EEEEeCCc
Confidence            99988888888887    66666554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=1e-13  Score=134.63  Aligned_cols=104  Identities=11%  Similarity=-0.076  Sum_probs=76.7

Q ss_pred             EEEeCCCCeEEEEeeCCCcceEE-----EEe--cCCEEEEEeC-CC--eEEEEeCCCccceeeccccceeE-EeeeccCC
Q psy18018        125 RVWHIESGECLHVLVGHLAAVRC-----VQY--DGKLVVSGAY-DY--MVKIWNPDTEECLHAELQETEVE-LSHGYALR  193 (635)
Q Consensus       125 ~vwd~~~~~~~~~l~~h~~~v~~-----l~~--~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~  193 (635)
                      ..+|..++..+..+..|......     .+|  ||++|+.++. ++  .|.+||+.+++.......+.... .....+++
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence            34567778888888888876665     667  8999999887 67  48888999888665554443332 23455677


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018        194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       194 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  228 (635)
                      ..|+.+..++.|++||+.+++....+..+...+..
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~  127 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY  127 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccc
Confidence            88999999999999999999887766666554433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.66  E-value=7.7e-13  Score=127.60  Aligned_cols=291  Identities=13%  Similarity=0.114  Sum_probs=201.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC---------CCe-EEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018        192 LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT---------GGV-WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI  261 (635)
Q Consensus       192 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~---------~~v-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  261 (635)
                      .++.+++++.++.|..+|..+++.+.......         ..+ ..+...+..++.++.++.+..+|..+++.......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            37889999999999999999999987765421         222 44556788999999999999999876543221000


Q ss_pred             cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018        262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT  341 (635)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (635)
                                                                                ..                  ..
T Consensus       132 ----------------------------------------------------------~~------------------~~  135 (376)
T 3q7m_A          132 ----------------------------------------------------------AG------------------EA  135 (376)
T ss_dssp             ----------------------------------------------------------SS------------------CC
T ss_pred             ----------------------------------------------------------CC------------------ce
Confidence                                                                      00                  00


Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce-----eEEEEeCCEEEEEeCCCcEEEEEccCCcce
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-----SGMELRNNILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      ....   . ..+..+++++.++.|..+|..+++.+..........     ......++.++.+..++.+..+|..+++..
T Consensus       136 ~~~p---~-~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~  211 (376)
T 3q7m_A          136 LSRP---V-VSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI  211 (376)
T ss_dssp             CSCC---E-EETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEE
T ss_pred             EcCC---E-EECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEE
Confidence            0000   1 124577888889999999999999887776543221     233445778888999999999999988766


Q ss_pred             eEEEEE------------------eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcE
Q psy18018        417 LMFRIC------------------LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTV  478 (635)
Q Consensus       417 ~~~~~~------------------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i  478 (635)
                      ......                  ...+..++.++.++.+..+|..+++.+.....  .....+..+++.+..++.++.+
T Consensus       212 w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~~~~~g~l  289 (376)
T 3q7m_A          212 WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYLVDQNDRV  289 (376)
T ss_dssp             EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEEEETTCCE
T ss_pred             EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEEEcCCCeE
Confidence            554421                  11356788888899999999999998876653  3345666778889999999999


Q ss_pred             EEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                      ..+|..+++.+......  ...........+..++.++.+|.+.++|.++++.+......           ...+.+...
T Consensus       290 ~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-----------~~~~~~~~~  356 (376)
T 3q7m_A          290 MALTIDGGVTLWTQSDL--LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVD-----------SSGFQTEPV  356 (376)
T ss_dssp             EEEETTTCCEEEEECTT--TTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC-----------TTCBCSCCE
T ss_pred             EEEECCCCcEEEeeccc--CCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecC-----------CCcceeCCE
Confidence            99999999988776521  11223333445778889999999999999999877655431           112221111


Q ss_pred             cCCCeEEEEecCCCeEEEEe
Q psy18018        559 QFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       559 s~~~~~l~~~~~d~~v~iwd  578 (635)
                      . .+..|+.++.+|.|..||
T Consensus       357 ~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          357 A-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             E-ETTEEEEEBTTSCEEEEE
T ss_pred             E-ECCEEEEEeCCCEEEEEe
Confidence            1 244566788899999887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=8.3e-14  Score=135.80  Aligned_cols=324  Identities=9%  Similarity=-0.062  Sum_probs=184.0

Q ss_pred             EEeCCCCeEEEEeeCCCcc-----eEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEE-eeeccCCC
Q psy18018        126 VWHIESGECLHVLVGHLAA-----VRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVEL-SHGYALRS  194 (635)
Q Consensus       126 vwd~~~~~~~~~l~~h~~~-----v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~  194 (635)
                      ..|..+++.+..+..+...     +..++|  ||++|+....+   ..|.+||+.+++............. ....+++.
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            4467777777777765443     666777  89998877543   4788889988875443333222222 23456678


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeee
Q psy18018        195 RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQ  274 (635)
Q Consensus       195 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (635)
                      .|+.++.++.|++||+.+++.......+..    ...++..|+....++...+|...                       
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~g~~l~~~~~~~~~~~~~~~-----------------------  146 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEE----WKGYGTWVANSDCTKLVGIEILK-----------------------  146 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTT----EEEEEEEEECTTSSEEEEEEEEG-----------------------
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccc----cCCCCCEEEeccCCccccccccc-----------------------
Confidence            898999999999999998887666554443    12234555555544444433210                       


Q ss_pred             eeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc
Q psy18018        275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV  354 (635)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  354 (635)
                                                                                              ..++|+++
T Consensus       147 ------------------------------------------------------------------------~~~spdg~  154 (396)
T 3c5m_A          147 ------------------------------------------------------------------------RDWQPLTS  154 (396)
T ss_dssp             ------------------------------------------------------------------------GGCCCCCS
T ss_pred             ------------------------------------------------------------------------cccCCCCc
Confidence                                                                                    01456666


Q ss_pred             EEEEe-----cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018        355 HVVSG-----SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV  429 (635)
Q Consensus       355 ~l~~~-----~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l  429 (635)
                      .++..     ..+..|++||+.+++..... .+...+..+.|++.                              +++.|
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~------------------------------dg~~l  203 (396)
T 3c5m_A          155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF------------------------------DDSTV  203 (396)
T ss_dssp             HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT------------------------------EEEEE
T ss_pred             ceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC------------------------------CCCEE
Confidence            55543     34668999999887755433 34445555555420                              23333


Q ss_pred             EEEeCC------CcEEEEeCCCCceeeeeccC-CccEEEEEe--cCCEEEEEeCC-----CcEEEEECCCCceeEEecCC
Q psy18018        430 VSGSLD------TSIRVWEAESGNLRHTLMGH-QSLTSGMEL--RNNILVSGNAD-----STVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       430 ~~~~~d------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~  495 (635)
                      +..+.+      ..|.+|++..++........ ...+..+.|  +++.|+.++.+     +.|++||+.+++........
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~  283 (396)
T 3c5m_A          204 GFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP  283 (396)
T ss_dssp             EEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC
T ss_pred             EEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC
Confidence            332221      35777777655433322211 224555555  56666665443     44999999887654433221


Q ss_pred             CcccccEEEEEe-cCCEEEEEe----------------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018        496 NKHQSAVTCLQF-NSRFVITSS----------------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL  558 (635)
Q Consensus       496 ~~~~~~v~~~~~-~~~~l~~~~----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  558 (635)
                       ...   ..... +++++++++                .+..|++||+.+++... +......-......-...+..++|
T Consensus       284 -~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~  358 (396)
T 3c5m_A          284 -PCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSF  358 (396)
T ss_dssp             -SEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEE
T ss_pred             -CCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceE
Confidence             111   34445 788888754                34789999998876422 211100000000000012566889


Q ss_pred             cCCCeEEEEecC-CCe--EEEEeCCCCce
Q psy18018        559 QFNSRFVITSSD-DGT--VKLWDVKTGEF  584 (635)
Q Consensus       559 s~~~~~l~~~~~-d~~--v~iwd~~~~~~  584 (635)
                      +|||+.|+.++. ++.  |.++|+.+++.
T Consensus       359 s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          359 TPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             ccCCCeEEEEecCCCCceEEEEEEccccc
Confidence            999998877664 454  44445555543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=6e-14  Score=136.82  Aligned_cols=263  Identities=10%  Similarity=0.029  Sum_probs=169.6

Q ss_pred             eEEEEecCcEEEEecCC---CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        346 LFGFQFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      ..+|+|||++|+.....   ..|.+|++.+++.......+........|+  ++.|+.++.++.+.+|++.+++......
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT  119 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence            35699999998776443   478888998877654443333323335565  6789899999999999998876544433


Q ss_pred             E---EeeCCcEEEEE------------------------------eCCCcEEEEeCCCCceeeeeccCCccEEEEEecC-
Q psy18018        421 I---CLFDGVHVVSG------------------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN-  466 (635)
Q Consensus       421 ~---~~~~~~~l~~~------------------------------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  466 (635)
                      .   ++++++.|+..                              ..+..|.+||+.+++..... .+...+..+.+++ 
T Consensus       120 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~  198 (396)
T 3c5m_A          120 VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF  198 (396)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT
T ss_pred             cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC
Confidence            1   33444444331                              34568999999988765544 4556677776644 


Q ss_pred             --CEEEEEeCC------CcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCC-----CcEEEEECCCCce
Q psy18018        467 --NILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDD-----GTVKLWDVKTGEF  531 (635)
Q Consensus       467 --~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-----~~i~vwd~~~~~~  531 (635)
                        +.++..+.+      ..|.+||+..++. ..+... .....+..++|  ++++|+.++.+     +.|++||+.+++.
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          199 DDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH-AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC-CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             CCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc-CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence              456555443      4688899876543 333221 01234666777  68877776544     4499999998764


Q ss_pred             eeeeccceecCceeEEeccCceecccccC-CCeEEEEec----------------CCCeEEEEeCCCCceEEeeeeccCC
Q psy18018        532 STPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSS----------------DDGTVKLWDVKTGEFIRNLVSLDSG  594 (635)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~d~~v~iwd~~~~~~~~~~~~~~~~  594 (635)
                      ......            . ... +.|+| ||+++++++                .+..|++||+.+++.. .+..    
T Consensus       277 ~~l~~~------------~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~----  337 (396)
T 3c5m_A          277 EEVMVM------------P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCK----  337 (396)
T ss_dssp             EEEEEC------------C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEE----
T ss_pred             EEeeeC------------C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccC----
Confidence            332111            1 122 78999 999888754                3478999999888753 3321    


Q ss_pred             CCCc-----------eEEEEEeCCCCeEEEEccC-CCeeEeEEEEEeeecC
Q psy18018        595 GSGG-----------VVWRIRASETKLVCAVGSR-NGTEETKLLVLDFDVD  633 (635)
Q Consensus       595 ~~~~-----------~i~~l~~s~d~~~l~~~~~-dg~~~~~l~~~d~~~~  633 (635)
                       +..           .+..++|+|||+.|+.++. ++.  ..||.+|++..
T Consensus       338 -~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~--~~l~~~~~~~~  385 (396)
T 3c5m_A          338 -HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV--PAIYIADVPES  385 (396)
T ss_dssp             -CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--CEEEEEECCTT
T ss_pred             -CCCccccccccccCCCCCceEccCCCeEEEEecCCCC--ceEEEEEEccc
Confidence             111           2556789999998877665 454  57888887654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=2.1e-13  Score=128.23  Aligned_cols=248  Identities=9%  Similarity=0.012  Sum_probs=170.0

Q ss_pred             cCCCeEEEEEccCCceEEeee------CCCcceeEEEEeCCEEE-EEeCCCcEEEEEccCCcceeEEE--------EEee
Q psy18018        360 SLDTSIRVWEAESGNLRHTLM------GHQSLTSGMELRNNILV-SGNADSTVKVWDIVSGTKKLMFR--------ICLF  424 (635)
Q Consensus       360 ~~dg~i~v~~~~~~~~~~~~~------~~~~~v~~l~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~--------~~~~  424 (635)
                      +.++.|.++|..+++....+.      ........+.++++.+. +...++.|.+||..+++....+.        .+++
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~   93 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS   93 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence            347899999999988765442      11234567777766544 44557899999999887755443        3557


Q ss_pred             CCcEEEEEe-CCCcEEEEeCCCCceeeeeccCC-----ccEEEEEecCCEEEEEe--CCCcEEEEECCCCceeEEecCCC
Q psy18018        425 DGVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQ-----SLTSGMELRNNILVSGN--ADSTVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       425 ~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~  496 (635)
                      +++ +.++. .++.|.+||..+++....+....     .....+.++++.+.+++  .++.|.++|+.+++....+... 
T Consensus        94 ~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-  171 (328)
T 3dsm_A           94 DEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-  171 (328)
T ss_dssp             TTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred             CCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence            874 55554 89999999999998877766433     13345555777666665  4889999999999888877641 


Q ss_pred             cccccEEEEEe--cCCEEEEEeCC----------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018        497 KHQSAVTCLQF--NSRFVITSSDD----------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       497 ~~~~~v~~~~~--~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                         .....+.+  ++++++++..+          +.|.++|..+++....+...          .......++|+||+++
T Consensus       172 ---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~----------~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          172 ---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK----------LGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             ---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC----------TTCCCEEEEECTTSCE
T ss_pred             ---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC----------CCCCceeEEEecCCCE
Confidence               12234555  57766666554          78999999988866554321          1235788999999998


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEc----cCCCeeEeEEEEEeee
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVG----SRNGTEETKLLVLDFD  631 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~----~~dg~~~~~l~~~d~~  631 (635)
                      |.++..  .|.+||+.+++..... ..  .........++++| ++.+.++.    ..++.    |++||.+
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~-~~--~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~----V~v~d~~  301 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRP-FL--EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI----VYRYSPQ  301 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSC-SB--CCCSSCEEEEEECTTTCCEEEEECTTSSSEEE----EEEECTT
T ss_pred             EEEEcc--EEEEEECCCCceeeee-ee--cCCCCceEEEEEcCCCCeEEEEcccccccCCE----EEEECCC
Confidence            888765  8999999988864211 11  11246788999999 55555555    45555    7777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=1.4e-13  Score=145.19  Aligned_cols=271  Identities=9%  Similarity=0.043  Sum_probs=173.6

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc-----eeEEEEe--CCEEEEEeCC---------CcEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL-----TSGMELR--NNILVSGNAD---------STVKV  407 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~l~s~~~d---------g~i~i  407 (635)
                      ...+.|+||+++++++  ++.|++||+.+++....+.+|...     ...++++  ++.++.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            3457899999988886  899999999999988878777643     2235665  6788888775         56679


Q ss_pred             EEccCCcce--------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee-eccCCccE-------------------
Q psy18018        408 WDIVSGTKK--------LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLT-------------------  459 (635)
Q Consensus       408 wd~~~~~~~--------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v-------------------  459 (635)
                      ||+.+++..        .....++|||+.|+.+ .++.|++|++.+++..+. ..++...+                   
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence            999887532        3455689999999988 468999999988775442 22333222                   


Q ss_pred             EEEEecCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEecCCC--
Q psy18018        460 SGMELRNNILVSGNADS------------------------------------TVKVWDIVS---GQ--CLQTLSGRN--  496 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~dg------------------------------------~i~iwd~~~---~~--~~~~~~~~~--  496 (635)
                      ...+++++.|+.++.|.                                    +|++||+.+   ++  ....+....  
T Consensus       176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~  255 (740)
T 4a5s_A          176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM  255 (740)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred             eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence            23455778888765321                                    478899888   63  222333211  


Q ss_pred             -cccccEEEEEe--cCCEEEEEeC----CCcEEEEECCCCc----eeeeeccceecCceeEEeccCce-----ecccccC
Q psy18018        497 -KHQSAVTCLQF--NSRFVITSSD----DGTVKLWDVKTGE----FSTPLMSSFILNPFYFLIYSQPL-----LCPHLQF  560 (635)
Q Consensus       497 -~~~~~v~~~~~--~~~~l~~~~~----d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~  560 (635)
                       .+...+..++|  ||+.++....    +..|++||+.+++    +.....       .....+...+     ...+|+|
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~-------l~~~~~~~~v~~~~~~~p~fsp  328 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ-------HIEMSTTGWVGRFRPSEPHFTL  328 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC-------EEEECSSSCSSSSSCCCCEECT
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE-------eeeccCCceEccCcCCCceEcC
Confidence             15566788888  7886665533    3379999999887    211110       0011123333     3688999


Q ss_pred             CCeEEE-EecC-C--CeEEEEeCCCCceEEeeeeccCCCCCceEEEEE-eCCCCeEEEEccC--CCeeEeEEEEEeee
Q psy18018        561 NSRFVI-TSSD-D--GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR-ASETKLVCAVGSR--NGTEETKLLVLDFD  631 (635)
Q Consensus       561 ~~~~l~-~~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~-~s~d~~~l~~~~~--dg~~~~~l~~~d~~  631 (635)
                      ||+.|+ ..+. +  ..|++||+.+++.. .+.    .+ ...+..+. ++ ++.+++++..  ++.....||.++++
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT----~g-~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~  399 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKDCT-FIT----KG-TWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLI  399 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSSCE-ESC----CS-SSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCceE-ecc----cC-CEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECC
Confidence            999877 5553 3  46889999877654 332    22 33444443 44 4445555555  33334678887764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=1.5e-12  Score=120.34  Aligned_cols=236  Identities=13%  Similarity=0.216  Sum_probs=154.0

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC------CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcc
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG------HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~------~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      ..+..++++++++.+++...++.|.+|+.. ++.+..+..      +...+..++++                       
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-----------------------   85 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-----------------------   85 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-----------------------
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-----------------------
Confidence            345567788999988888889999999987 555555432      22344555542                       


Q ss_pred             eeEEEEEeeCCcEEEEEeC-CCcEEEEeCCCCceeeeecc-CCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        416 KLMFRICLFDGVHVVSGSL-DTSIRVWEAESGNLRHTLMG-HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                             .+++..+++... ++.|.+|| .+++.+..+.. +...+.++.+  +++++++...++.|.+||.. ++.+..
T Consensus        86 -------~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~  156 (286)
T 1q7f_A           86 -------RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHK  156 (286)
T ss_dssp             -------TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             -------cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEE
Confidence                   122222333222 56677777 44555555432 3345677776  46677777788999999964 566665


Q ss_pred             ecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        492 LSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      +... .+...+..++++  ++++++...++.|++||.. ++.+..+...         .+...+..++++|+|+++++..
T Consensus       157 ~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---------g~~~~p~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          157 FGCS-KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE---------GITNYPIGVGINSNGEILIADN  225 (286)
T ss_dssp             EECT-TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT---------TTSCSEEEEEECTTCCEEEEEC
T ss_pred             eCCC-CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccC---------CccCCCcEEEECCCCCEEEEeC
Confidence            5421 133457788884  6777777778999999974 4444443221         0124577899999999998888


Q ss_pred             CCC-eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        570 DDG-TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       570 ~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      .++ .|.+||. +++.+..+..   ......+.+++++|+|+++++ +.++.  +++|.+
T Consensus       226 ~~~~~i~~~~~-~g~~~~~~~~---~~~~~~~~~i~~~~~g~l~vs-~~~~~--v~v~~~  278 (286)
T 1q7f_A          226 HNNFNLTIFTQ-DGQLISALES---KVKHAQCFDVALMDDGSVVLA-SKDYR--LYIYRY  278 (286)
T ss_dssp             SSSCEEEEECT-TSCEEEEEEE---SSCCSCEEEEEEETTTEEEEE-ETTTE--EEEEEC
T ss_pred             CCCEEEEEECC-CCCEEEEEcc---cCCCCcceeEEECCCCcEEEE-CCCCe--EEEEEc
Confidence            776 9999995 5777776643   122335789999999997777 56776  444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.60  E-value=3e-13  Score=141.36  Aligned_cols=164  Identities=13%  Similarity=-0.028  Sum_probs=100.9

Q ss_pred             CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEE---------EE
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVIT---------CL   87 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~---------~~   87 (635)
                      ..+.+.+|...+ ..++||    +++.+.++....      .+....||....+...+.+..|...+ .         ..
T Consensus        15 ~~~~~~~~~~~~-~~~~~s----~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~   82 (662)
T 3azo_A           15 DAALVASRSGRP-ACVGAV----GDEVWWVAPRPA------EAGRATLVRRRADGAEESALPAPWNV-RNRVFEYSGFPW   82 (662)
T ss_dssp             CHHHHHHTCSCC-EEEEEE----TTEEEEEEEETT------TTTEEEEEEECTTSCEEESSCTTCCB-CCCGGGTCCCCE
T ss_pred             CHHHHhhcCCcc-ceeEEc----CCeEEEEecCcc------cCCcEEEEEECCCCCcceeCCCCccc-cccccccCCccc
Confidence            346788999998 999999    888777776321      12234468765555566677776554 3         33


Q ss_pred             EEc----CCE-EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCC--CCeEEEEeeC-----CCcceEEEEe--cCC
Q psy18018         88 QFS----GSR-IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIE--SGECLHVLVG-----HLAAVRCVQY--DGK  153 (635)
Q Consensus        88 ~~s----~~~-l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~--~~~~~~~l~~-----h~~~v~~l~~--~~~  153 (635)
                      +|+    |++ |+..+.                    .+..|.++++.  .......+..     |...+..++|  ||+
T Consensus        83 ~~~~SPDg~~~la~~~~--------------------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~  142 (662)
T 3azo_A           83 AGVPRPAGGPLLVFTHF--------------------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG  142 (662)
T ss_dssp             EEECCSSSSCEEEEEBT--------------------TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT
T ss_pred             eeeeecCCCeEEEEEEC--------------------CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC
Confidence            332    555 444332                    12334444443  2022344544     6778889999  999


Q ss_pred             EEEEEeCC----------CeEEEEeCCC------ccceeecc-ccceeE-EeeeccCCCEEEEEeCC--------CcEEE
Q psy18018        154 LVVSGAYD----------YMVKIWNPDT------EECLHAEL-QETEVE-LSHGYALRSRIVSGSDD--------NTLKV  207 (635)
Q Consensus       154 ~l~s~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~d--------g~i~v  207 (635)
                      .|++++.+          ..|.+||+.+      ++.. .+. .+.... .....+++.+|+.++.+        ..|++
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~  221 (662)
T 3azo_A          143 EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT  221 (662)
T ss_dssp             EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred             EEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence            99999887          6899999988      5543 333 322333 33344566777777644        36788


Q ss_pred             EECC-CC
Q psy18018        208 WSAT-TG  213 (635)
Q Consensus       208 wd~~-~~  213 (635)
                      ||+. ++
T Consensus       222 ~d~~~~g  228 (662)
T 3azo_A          222 ARVTEDG  228 (662)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            8877 45

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=8.2e-13  Score=120.11  Aligned_cols=217  Identities=10%  Similarity=0.059  Sum_probs=157.5

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV  430 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~  430 (635)
                      .++.|++++.++.|.+||..+++.+..+..+. ..+.++.+.                               |+|+.++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-------------------------------pdG~ilv   52 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-------------------------------KAGEILF   52 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-------------------------------TTSCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-------------------------------CCCCEEE
Confidence            45789999999999999999999998888765 244444443                               4555555


Q ss_pred             EEeCCCcEEEEeCCCCceeeeeccCC-ccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCceeEEecCCC---cccccEE
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMEL--RNNILVSGNA-DSTVKVWDIVSGQCLQTLSGRN---KHQSAVT  503 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~  503 (635)
                        +.++.+..||. +++.+.++..+. ..+.+..+  +++++++.+. ++.+..+|. +++.+..+....   .+.....
T Consensus        53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~  128 (276)
T 3no2_A           53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR  128 (276)
T ss_dssp             --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred             --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence              34566888888 788888887643 35555554  6788888877 788888886 677777665211   0111222


Q ss_pred             E--EEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        504 C--LQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       504 ~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      .  ...+++++++...++.|..||.+ |+.+..+...            ....++.+.+++++++++..++.|..+|..+
T Consensus       129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS------------SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence            2  33379999999999999999998 9888776542            2344566778999999999899999999999


Q ss_pred             CceEEeeeeccCC-CCCceEEEEEeCCCCeEEEEcc
Q psy18018        582 GEFIRNLVSLDSG-GSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       582 ~~~~~~~~~~~~~-~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                      |+.+.++...... ..-..+..++..++|.++++..
T Consensus       196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9999998643211 1234578999999999988873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=9.1e-12  Score=124.61  Aligned_cols=322  Identities=12%  Similarity=0.004  Sum_probs=202.6

Q ss_pred             EECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC--Cccceeecccc
Q psy18018        106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD--TEECLHAELQE  181 (635)
Q Consensus       106 Wd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~  181 (635)
                      |....+..++++...+++|.++|..+++.+.++.... .+..+.|  ||+++++++.|+.|.+||+.  +++.+.++...
T Consensus       161 ~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          161 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             cccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence            3333345556666677777888888888888776433 4557788  89999999999999999996  77777766655


Q ss_pred             ceeEEeeec----cCCCEEEEEeC-CCcEEEEECCCCeEEEEEeCC----------CC-CeEEEEee---CCEEEEeeCc
Q psy18018        182 TEVELSHGY----ALRSRIVSGSD-DNTLKVWSATTGKCLRTLIGH----------TG-GVWSSQMA---GNIIISGSTD  242 (635)
Q Consensus       182 ~~~~~~~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h----------~~-~v~~~~~~---~~~l~s~~~d  242 (635)
                      .........    +++.+++++.. ++.+.++|..+.+.++++...          .. .+..+..+   ..++++...+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            554444444    36777777665 589999999999998877532          12 45566553   4466666777


Q ss_pred             eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCC
Q psy18018        243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN  322 (635)
Q Consensus       243 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (635)
                      |.|.++|..........                                                               
T Consensus       320 g~v~~vd~~~~~~~~v~---------------------------------------------------------------  336 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTT---------------------------------------------------------------  336 (567)
T ss_dssp             TEEEEEETTCSSEEEEE---------------------------------------------------------------
T ss_pred             CeEEEEecCCCccceee---------------------------------------------------------------
Confidence            88888886542100000                                                               


Q ss_pred             cchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-CCCeEEEEEccCCceEEeeeC-----CCcceeEEEEeCCEE
Q psy18018        323 LLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMG-----HQSLTSGMELRNNIL  396 (635)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~l  396 (635)
                                    ............|+|++++++++. .++.|.++|+.+++.+..+..     |.+.-  ..      
T Consensus       337 --------------~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g--~~------  394 (567)
T 1qks_A          337 --------------EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG--AN------  394 (567)
T ss_dssp             --------------EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC--EE------
T ss_pred             --------------eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc--ee------
Confidence                          000001122345899999887665 578999999999887665543     21111  11      


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe--CCCcEEEEeCCC-------CceeeeeccCCccE--EEEEec
Q psy18018        397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS--LDTSIRVWEAES-------GNLRHTLMGHQSLT--SGMELR  465 (635)
Q Consensus       397 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~-------~~~~~~~~~~~~~v--~~~~~~  465 (635)
                                              ++.|++..+.+.+  .++.|.++|..+       .+.++++......-  ....++
T Consensus       395 ------------------------~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~  450 (567)
T 1qks_A          395 ------------------------FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN  450 (567)
T ss_dssp             ------------------------EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             ------------------------eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC
Confidence                                    1223333333222  346677777766       55667766543221  234456


Q ss_pred             CCEEEEEeC-------CCcEEEEECCCC-----cee-EEec-----CCCcccccEEEEEe--cCCEEEEEe-----CCCc
Q psy18018        466 NNILVSGNA-------DSTVKVWDIVSG-----QCL-QTLS-----GRNKHQSAVTCLQF--NSRFVITSS-----DDGT  520 (635)
Q Consensus       466 ~~~l~s~~~-------dg~i~iwd~~~~-----~~~-~~~~-----~~~~~~~~v~~~~~--~~~~l~~~~-----~d~~  520 (635)
                      ++++.+...       .++|.++|+.+.     ... ..+.     +.......+..+.|  +|+.+..+.     .++.
T Consensus       451 ~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~  530 (567)
T 1qks_A          451 SQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA  530 (567)
T ss_dssp             CSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCE
T ss_pred             CCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCc
Confidence            677777653       358999999876     211 2221     11112346777888  577776653     3799


Q ss_pred             EEEEECCCCceeeeecc
Q psy18018        521 VKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       521 i~vwd~~~~~~~~~~~~  537 (635)
                      |.|+|.++++++..+..
T Consensus       531 i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          531 LVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEEETTTTEEEEEECC
T ss_pred             EEEEECCCceEEEEeCC
Confidence            99999999998877764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.58  E-value=1.2e-12  Score=136.80  Aligned_cols=273  Identities=14%  Similarity=0.091  Sum_probs=174.2

Q ss_pred             CCceEEEEecCcEEEEe--cCCCeEEEEEccCCceEEeeeCCCccee---------EEEEe----CCE-EEEEe-CCCcE
Q psy18018        343 VPDLFGFQFDGVHVVSG--SLDTSIRVWEAESGNLRHTLMGHQSLTS---------GMELR----NNI-LVSGN-ADSTV  405 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~--~~dg~i~v~~~~~~~~~~~~~~~~~~v~---------~l~~~----~~~-l~s~~-~dg~i  405 (635)
                      .....++++++..++..  +.++...+|....+.....+..+...+.         ...++    ++. |+..+ .+..|
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l  104 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRL  104 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeE
Confidence            34445667665566666  5578899998655555666666665544         44443    566 55444 35677


Q ss_pred             EEEEcc--C-Ccc-------------eeEEEEEeeCCcEEEEEeCC----------CcEEEEeCCC------Cceeeeec
Q psy18018        406 KVWDIV--S-GTK-------------KLMFRICLFDGVHVVSGSLD----------TSIRVWEAES------GNLRHTLM  453 (635)
Q Consensus       406 ~iwd~~--~-~~~-------------~~~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~  453 (635)
                      .++++.  . +..             ......++|||+.|++++.+          ..|++||+.+      ++. ..+.
T Consensus       105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~  183 (662)
T 3azo_A          105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELS  183 (662)
T ss_dssp             EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESS
T ss_pred             EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEE
Confidence            777766  2 321             12233589999999998877          5899999987      544 4444


Q ss_pred             -cCCccEEEEEe--cCCEEEEEeCC--------CcEEEEECC-CC---ceeEEecCCCcccccEEEEEe--cCCEEEEEe
Q psy18018        454 -GHQSLTSGMEL--RNNILVSGNAD--------STVKVWDIV-SG---QCLQTLSGRNKHQSAVTCLQF--NSRFVITSS  516 (635)
Q Consensus       454 -~~~~~v~~~~~--~~~~l~s~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  516 (635)
                       .+...+..+.+  +++.|+.++.+        ..|++||+. ++   +.......   +...+..+.|  ||+++++++
T Consensus       184 ~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          184 DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---PEEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---TTBCEEEEEECTTSCEEEEEC
T ss_pred             ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---CCceEcceEECCCCeEEEEEC
Confidence             44555555444  67788877754        379999998 56   33333332   4567888888  688888888


Q ss_pred             CCC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE--eCCCCceEEeeeecc
Q psy18018        517 DDG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW--DVKTGEFIRNLVSLD  592 (635)
Q Consensus       517 ~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw--d~~~~~~~~~~~~~~  592 (635)
                      .++  .|.+||+.+++.......+...   ........+..++|+|++++++++.. +.++||  |+.+++ +..+    
T Consensus       261 ~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l----  331 (662)
T 3azo_A          261 RTGWWNLHRVDPATGAATQLCRREEEF---AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA----  331 (662)
T ss_dssp             TTSSCEEEEECTTTCCEEESSCCSSBS---SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC----
T ss_pred             CCCCeEEEEEECCCCceeecccccccc---cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe----
Confidence            888  6666776666644322211100   00011222567889999999999998 999999  655565 5555    


Q ss_pred             CCCCCceEEEE-EeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        593 SGGSGGVVWRI-RASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       593 ~~~~~~~i~~l-~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                       ..+...+..+ +++++..+++.++.+..  ..+|.+|++
T Consensus       332 -~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~i~~~d~~  368 (662)
T 3azo_A          332 -AGPWTEWAATLTVSGTRAVGVAASPRTA--YEVVELDTV  368 (662)
T ss_dssp             -CSSCCEEEEEEEEETTEEEEEEEETTEE--EEEEEEETT
T ss_pred             -cCCCCeEEEEEecCCCEEEEEEcCCCCC--CEEEEEECC
Confidence             3456677777 66555555555565554  668888754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=2.4e-12  Score=119.57  Aligned_cols=228  Identities=8%  Similarity=0.043  Sum_probs=145.7

Q ss_pred             CCceEEEEecCc-EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        343 VPDLFGFQFDGV-HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       343 ~~~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      .....+|+|+++ .++++..++.|..|+..++  ...+..+...+.+++++                             
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~-----------------------------   77 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLN-----------------------------   77 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEEC-----------------------------
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeEC-----------------------------
Confidence            345678999998 7788888999999999876  55666666667777775                             


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC----CccEEEEEe--cCCEEEEE----e-------------CCCcE
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH----QSLTSGMEL--RNNILVSG----N-------------ADSTV  478 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~s~----~-------------~dg~i  478 (635)
                        ++|+.+++...++.|.+||..+++........    ...+..+.+  +++++++.    .             ..+.|
T Consensus        78 --~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l  155 (296)
T 3e5z_A           78 --KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV  155 (296)
T ss_dssp             --TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred             --CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence              23333333323344555555444432221111    112233444  56666662    2             13456


Q ss_pred             EEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC-CCce---eeeeccceecCceeEEeccCc
Q psy18018        479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK-TGEF---STPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      ..++.. ++. ..+..   +......+++  +++.+++.+.++.|++|++. +++.   ...+ .          .+...
T Consensus       156 ~~~~~~-g~~-~~~~~---~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~----------~~~~~  219 (296)
T 3e5z_A          156 FRLAPD-GTL-SAPIR---DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T----------VEPGK  219 (296)
T ss_dssp             EEECTT-SCE-EEEEC---CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C----------CSSSC
T ss_pred             EEECCC-CCE-EEeec---CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e----------CCCCC
Confidence            666654 443 33332   4445667777  68888777788999999997 4543   1111 1          13445


Q ss_pred             eecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe-CCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        553 LLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA-SETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +..++++++|++.++.  ++.|.+||.. ++.+..+.     .+.. +.+++| +||++.|.+++.++     ||.++++
T Consensus       220 p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-----~~~~-~~~~~f~~~d~~~L~v~t~~~-----l~~~~~~  285 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-----TPQT-TSNLCFGGPEGRTLYMTVSTE-----FWSIETN  285 (296)
T ss_dssp             CCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-----CSSC-CCEEEEESTTSCEEEEEETTE-----EEEEECS
T ss_pred             CCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-----CCCC-ceeEEEECCCCCEEEEEcCCe-----EEEEEcc
Confidence            6789999999977766  7889999986 77777763     3344 889999 68999999888876     7887775


Q ss_pred             cC
Q psy18018        632 VD  633 (635)
Q Consensus       632 ~~  633 (635)
                      ..
T Consensus       286 ~~  287 (296)
T 3e5z_A          286 VR  287 (296)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=5.2e-12  Score=118.73  Aligned_cols=260  Identities=10%  Similarity=-0.033  Sum_probs=164.8

Q ss_pred             CCcEEEEeCCCCeEEEEee------CCCcceEEEEec-CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC
Q psy18018        121 DATLRVWHIESGECLHVLV------GHLAAVRCVQYD-GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR  193 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~l~------~h~~~v~~l~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (635)
                      +++|.++|.++++....+.      ........+.++ ++..++...++.|.+||..+++.+.++............+++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g   95 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE   95 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC
Confidence            5667777777766554331      122345778784 445555566799999999999988777543333333332444


Q ss_pred             CEEEEEe-CCCcEEEEECCCCeEEEEEeCCC-----CCeEEEEeeCCEEEEee--CceeEEEecccceeeeccccccccC
Q psy18018        194 SRIVSGS-DDNTLKVWSATTGKCLRTLIGHT-----GGVWSSQMAGNIIISGS--TDRTLKGWSNAERILAIGQLIDSCE  265 (635)
Q Consensus       194 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~  265 (635)
                       +++++. .++.|.+||..+++....+....     .....++++++.++.+.  .++.|.++|..+.......      
T Consensus        96 -~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i------  168 (328)
T 3dsm_A           96 -KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDEL------  168 (328)
T ss_dssp             -EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEE------
T ss_pred             -eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEE------
Confidence             677776 88999999999999887776433     14456666777766665  4899999998765321100      


Q ss_pred             ccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCc
Q psy18018        266 PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD  345 (635)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (635)
                                                                                               .....+.
T Consensus       169 -------------------------------------------------------------------------~~g~~p~  175 (328)
T 3dsm_A          169 -------------------------------------------------------------------------TIGIQPT  175 (328)
T ss_dssp             -------------------------------------------------------------------------ECSSCBC
T ss_pred             -------------------------------------------------------------------------EcCCCcc
Confidence                                                                                     0011223


Q ss_pred             eEEEEecCcEEEEecCC----------CeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCc
Q psy18018        346 LFGFQFDGVHVVSGSLD----------TSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~d----------g~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~  414 (635)
                      .++++|+|+++++...+          +.|.++|..+++....+.... .....++++                      
T Consensus       176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~----------------------  233 (328)
T 3dsm_A          176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN----------------------  233 (328)
T ss_dssp             CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC----------------------
T ss_pred             ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe----------------------
Confidence            45678888877766554          789999998888776654321 245556654                      


Q ss_pred             ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee--eccCCccEEEEEec---CCEEEEE----eCCCcEEEEECCC
Q psy18018        415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT--LMGHQSLTSGMELR---NNILVSG----NADSTVKVWDIVS  485 (635)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~----~~dg~i~iwd~~~  485 (635)
                               |+++++.++..  .|.+||..+++....  +..+.....+++++   +.++++.    ..++.|.+||.. 
T Consensus       234 ---------~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-  301 (328)
T 3dsm_A          234 ---------GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-  301 (328)
T ss_dssp             ---------TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred             ---------cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence                     34444444433  677777766654321  11123456677774   3456665    578999999998 


Q ss_pred             CceeEEecC
Q psy18018        486 GQCLQTLSG  494 (635)
Q Consensus       486 ~~~~~~~~~  494 (635)
                      ++.+..+..
T Consensus       302 g~~~~~i~~  310 (328)
T 3dsm_A          302 GKLIDEFYV  310 (328)
T ss_dssp             CCEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            888887763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=4.1e-12  Score=121.21  Aligned_cols=243  Identities=12%  Similarity=0.102  Sum_probs=141.9

Q ss_pred             eEEEEecCcEEEEecCC---C--eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        346 LFGFQFDGVHVVSGSLD---T--SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~d---g--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      ..+|+|||++|+..+.+   +  .|.+|++.+++.......+.  +..++|+  ++.|+.++.+..      ........
T Consensus        63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~------~~~~~~~~  134 (347)
T 2gop_A           63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRR------EDEDFIFE  134 (347)
T ss_dssp             EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCC------C-------
T ss_pred             CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCC------CcCCcEEE
Confidence            35699999998877653   2  48888888777655444333  7888886  456666553310      00000000


Q ss_pred             EE-EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCC-------cEEEEECCCCcee
Q psy18018        419 FR-ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADS-------TVKVWDIVSGQCL  489 (635)
Q Consensus       419 ~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg-------~i~iwd~~~~~~~  489 (635)
                      .. .+..++..+. ......|.+||+.+++.+..+.. . .+..+.++++ +++++..++       ...+|.+.+++ .
T Consensus       135 ~~~~~~~~g~~~~-~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFF-DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-E  210 (347)
T ss_dssp             --CCCC----------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-E
T ss_pred             cccceeecCcccc-cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-e
Confidence            00 0011121111 11235688999988876444444 2 5555555433 666665542       34455444444 3


Q ss_pred             EEecCCCcccccEEEEEecCCEEEEEeCC--------CcEEEEECCCCceeeeeccceecCceeEEeccCceec-ccccC
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSRFVITSSDD--------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-PHLQF  560 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~  560 (635)
                      ..+..   + ..+..++.+|++|+.++.+        ..|.+||  +++.......           +...+.. +.|+ 
T Consensus       211 ~~l~~---~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----------~~~~~~~~~~~s-  272 (347)
T 2gop_A          211 EKMFE---K-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-----------VDRGVGQAKIKD-  272 (347)
T ss_dssp             EEEEE---E-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-----------CCSEEEEEEEET-
T ss_pred             EEecc---C-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-----------CCcccCCccEEc-
Confidence            44433   3 4455567789988877754        3678888  4543322211           2445665 8899 


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        561 NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       561 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      |+ ++++++.++.++|| +.+++.....      .+...|.+++|+|  .++++++.++.. ..||.+|
T Consensus       273 dg-~~~~~~~~~~~~l~-~~~g~~~~~~------~~~~~v~~~~~s~--~~~~~~~~~~~~-~~l~~~~  330 (347)
T 2gop_A          273 GK-VYFTLFEEGSVNLY-IWDGEIKPIA------KGRHWIMGFDVDE--IVVYLKETATRL-RELFTWD  330 (347)
T ss_dssp             TE-EEEEEEETTEEEEE-EESSSEEEEE------CSSSEEEEEEESS--SEEEEEECSSSC-CEEEEES
T ss_pred             Cc-EEEEEecCCcEEEE-EcCCceEEEe------cCCCeEEeeeeeC--cEEEEEcCCCCh-HHheEeC
Confidence            88 99999999999999 8866653333      3367899999999  666666666652 3678776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=4e-12  Score=120.42  Aligned_cols=276  Identities=9%  Similarity=0.025  Sum_probs=174.0

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE----
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF----  419 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----  419 (635)
                      .++|++++..++....++.++.|   .++....+..+...+.+++++  +.+++++..++.|.+||..+++.....    
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   86 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK   86 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS
T ss_pred             eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC
Confidence            34566766666666677788888   355566677777777888886  556667778889999998776543322    


Q ss_pred             -----EEEeeCCcEEEEEeCC----CcEEEEeCCCCceeeeec--cCCccEEEEEec--CCEEEEEeC------CCcEEE
Q psy18018        420 -----RICLFDGVHVVSGSLD----TSIRVWEAESGNLRHTLM--GHQSLTSGMELR--NNILVSGNA------DSTVKV  480 (635)
Q Consensus       420 -----~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~------dg~i~i  480 (635)
                           ..++++++.+++...+    +.|.+||..+++....+.  .+...+.++.++  ++++++...      .+.|..
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~  166 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY  166 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEE
Confidence                 2356788877776665    689999998876653333  234567777775  556665543      355666


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecc
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      +|..+++......    ....+..+++  +++.+ ++.+.++.|.+||+.+ +.....+.....    ........+..+
T Consensus       167 ~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~----~~~~~~~~~~~i  238 (333)
T 2dg1_A          167 VSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP----YYFTGHEGPDSC  238 (333)
T ss_dssp             ECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE----EECCSSSEEEEE
T ss_pred             EeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE----EecCCCCCCCce
Confidence            6665544433222    2334667777  56655 4455678999999974 333322211000    000001356779


Q ss_pred             cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC-CCCCceEEEEEeCCCCeEEEEccCCCe--eEeEEEEEeeecC
Q psy18018        557 HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS-GGSGGVVWRIRASETKLVCAVGSRNGT--EETKLLVLDFDVD  633 (635)
Q Consensus       557 ~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~d~~~l~~~~~dg~--~~~~l~~~d~~~~  633 (635)
                      +++++|+++++...++.|.+||. +++.+..+..... .++...+.+++|+||++.|++++.++.  ..-.||.++....
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~  317 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK  317 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred             EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence            99999998888878899999998 5776666632100 012226889999999877766665531  1235888876543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=1.5e-11  Score=114.87  Aligned_cols=243  Identities=15%  Similarity=0.085  Sum_probs=157.1

Q ss_pred             EEEEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCCC-------cceeEEEEe--CCEEEEEeC--CCcE
Q psy18018        347 FGFQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGHQ-------SLTSGMELR--NNILVSGNA--DSTV  405 (635)
Q Consensus       347 ~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~-------~~v~~l~~~--~~~l~s~~~--dg~i  405 (635)
                      ++++|||+++++++          .++.|.+||..+.+.+..+....       .....++++  +++++++..  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            34677777766654          35679999999988887765321       134456665  677777753  6889


Q ss_pred             EEEEccCCcceeEEEE------EeeCCcEEEEEeCCCcEEEEeCCC-CceeeeeccC----CccEE-EEEe---cCCEEE
Q psy18018        406 KVWDIVSGTKKLMFRI------CLFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGH----QSLTS-GMEL---RNNILV  470 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~~------~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~----~~~v~-~~~~---~~~~l~  470 (635)
                      .++|+.+.+....+..      +....+.+++.+.||++.+.++.+ ++.......+    ..++. ...+   ++ .++
T Consensus       163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~  241 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLV  241 (386)
T ss_dssp             EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEE
T ss_pred             EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEE
Confidence            9999999887666542      333456777888999999999976 5553322111    11111 1222   34 344


Q ss_pred             EEeCCCcEEEEECCCCc--eeEEec---------CCCcccccEEEEEecCCEEEEEeC----------CCcEEEEECCCC
Q psy18018        471 SGNADSTVKVWDIVSGQ--CLQTLS---------GRNKHQSAVTCLQFNSRFVITSSD----------DGTVKLWDVKTG  529 (635)
Q Consensus       471 s~~~dg~i~iwd~~~~~--~~~~~~---------~~~~~~~~v~~~~~~~~~l~~~~~----------d~~i~vwd~~~~  529 (635)
                      ..+.+|++++.|+.+..  ....+.         +.........++..+++.++....          .+.|.+.|++++
T Consensus       242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~  321 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  321 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46668999999997653  333332         000011122334446676666542          257999999999


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCe-EEEE-ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVIT-SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      +.+..+..            ...+.+++|+||++ +|++ ...++.|.++|..+++.++++..   .+|   -..|.+++
T Consensus       322 kv~~~i~v------------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~---~~~---p~~l~~s~  383 (386)
T 3sjl_D          322 ERLAKFEM------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ---LGH---GPQVITTA  383 (386)
T ss_dssp             CEEEEEEE------------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC---CCS---SCCEEEEC
T ss_pred             eEEEEEEC------------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC---CCC---CceeEECC
Confidence            98887764            34678899999996 6655 45689999999999999998853   233   33556666


Q ss_pred             C
Q psy18018        608 T  608 (635)
Q Consensus       608 d  608 (635)
                      |
T Consensus       384 d  384 (386)
T 3sjl_D          384 D  384 (386)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=5.4e-11  Score=113.15  Aligned_cols=267  Identities=11%  Similarity=-0.057  Sum_probs=172.4

Q ss_pred             EecCcEEEEecC--CC---eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEccC
Q psy18018        350 QFDGVHVVSGSL--DT---SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIVS  412 (635)
Q Consensus       350 s~~~~~l~~~~~--dg---~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~  412 (635)
                      .|+++++++...  ..   .|.++|..+++.+..+.....+  .++++  ++.++.+.          .++.|.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            467777777664  22   7899999999988887765544  66665  66777765          367899999987


Q ss_pred             CcceeEE----------------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeee-eccCCccEEEEEecCCEEEEEe
Q psy18018        413 GTKKLMF----------------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGN  473 (635)
Q Consensus       413 ~~~~~~~----------------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~l~s~~  473 (635)
                      .+.....                ..++|||++|+++..  ++.|.++| .+++.+.+ +... ..+......++.+++.+
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~  184 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEc
Confidence            6544322                357899999999874  57899999 99998877 5432 22222222345777888


Q ss_pred             CCCcEEEEECCCCceeEEecCC--CcccccE-EEE--EecCCEEEEEeCCCcEEEEECCCCcee--eeeccceecCceeE
Q psy18018        474 ADSTVKVWDIVSGQCLQTLSGR--NKHQSAV-TCL--QFNSRFVITSSDDGTVKLWDVKTGEFS--TPLMSSFILNPFYF  546 (635)
Q Consensus       474 ~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v-~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~  546 (635)
                      .||.+.++|. +++........  .....++ ...  ..++..++..+.++.+.+.|+.+....  ..+..... .....
T Consensus       185 ~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~-~~~~~  262 (373)
T 2mad_H          185 AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG-GRKAD  262 (373)
T ss_pred             CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC-ccccc
Confidence            9999999999 87766432210  0011221 112  223344343446789999999765321  11110000 00000


Q ss_pred             EeccCceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEc
Q psy18018        547 LIYSQPLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVG  615 (635)
Q Consensus       547 ~~~~~~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~  615 (635)
                      .........++++||++.+.++..          ++.|.++|+.+++.+..+.      ......+++|+|||+ +|+++
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------LGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------CCCCcCeEEECCCCCeEEEEE
Confidence            001122344778999988777643          3589999999999998883      233578999999999 77777


Q ss_pred             c-CCCeeEeEEEEEeeec
Q psy18018        616 S-RNGTEETKLLVLDFDV  632 (635)
Q Consensus       616 ~-~dg~~~~~l~~~d~~~  632 (635)
                      . .++.    |.++|.+.
T Consensus       337 ~~~~~~----V~ViD~~t  350 (373)
T 2mad_H          337 SAGTEV----LHIYDAGA  350 (373)
T ss_pred             cCCCCe----EEEEECCC
Confidence            6 4676    78888754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.52  E-value=1.4e-11  Score=111.91  Aligned_cols=199  Identities=14%  Similarity=0.071  Sum_probs=127.3

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      .++|+|+.++  +.++.|..||. +++.+..+..+. ..+.+..+                               .++|
T Consensus        43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~-------------------------------~~dG   88 (276)
T 3no2_A           43 AATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI-------------------------------LPDG   88 (276)
T ss_dssp             EECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE-------------------------------CTTS
T ss_pred             EECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEE-------------------------------CCCC
Confidence            3667777777  33567888888 788877776542 23333333                               2445


Q ss_pred             cEEEEEeC-CCcEEEEeCCCCceeeeecc------CCccE--EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018        427 VHVVSGSL-DTSIRVWEAESGNLRHTLMG------HQSLT--SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       427 ~~l~~~~~-d~~i~~~d~~~~~~~~~~~~------~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      +.+++.+. ++.+..+|. +++.+.++..      +....  .....+++++++...++.|..||.+ ++.+..+...  
T Consensus        89 ~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--  164 (276)
T 3no2_A           89 NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--  164 (276)
T ss_dssp             CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--
T ss_pred             CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--
Confidence            55555444 445555553 4554444321      11111  1334578899999999999999998 9999988752  


Q ss_pred             ccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec--CC--
Q psy18018        498 HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS--DD--  571 (635)
Q Consensus       498 ~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--  571 (635)
                        ....++..  +++.+++++.++.|..+|..+++.+..+........     ....+..++..++|.++++..  ..  
T Consensus       165 --~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-----~l~~~~~~~~~~~G~i~v~~~~g~~~~  237 (276)
T 3no2_A          165 --GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-----QLFFVAQLFPLQNGGLYICNWQGHDRE  237 (276)
T ss_dssp             --SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-----CCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred             --CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-----cccccccceEcCCCCEEEEeccCcccc
Confidence              12223333  688999998888999999999998887754211100     112366778889999998873  21  


Q ss_pred             ----CeEEEEeC-CCCceEEeeeec
Q psy18018        572 ----GTVKLWDV-KTGEFIRNLVSL  591 (635)
Q Consensus       572 ----~~v~iwd~-~~~~~~~~~~~~  591 (635)
                          +..+++++ .+|+.+.++...
T Consensus       238 ~~~~~~~~~~~~~~~g~~~W~~~~~  262 (276)
T 3no2_A          238 AGKGKHPQLVEIDSEGKVVWQLNDK  262 (276)
T ss_dssp             GGGSCCCSEEEECTTSBEEEEECCT
T ss_pred             ccccCCceEEEECCCCCEEEEecCc
Confidence                24466666 678888888543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.52  E-value=1.1e-07  Score=101.19  Aligned_cols=488  Identities=10%  Similarity=0.065  Sum_probs=274.2

Q ss_pred             EEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCc----ceEEEEEEc-CCEEEEeeCCCcE
Q psy18018         29 ITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDD----HVITCLQFS-GSRIVSGSDDNTL  103 (635)
Q Consensus        29 i~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~----~vi~~~~~s-~~~l~s~~~d~~v  103 (635)
                      |++|...    ++|.+-+... .+         +..||..+.+.. .+.....    .| .++..+ ...|..++. +.|
T Consensus        90 I~~i~~d----~~g~lWigT~-~G---------l~~yd~~~~~f~-~~~~~~~~~~~~i-~~i~~d~~g~lwi~t~-~gl  152 (795)
T 4a2l_A           90 SRIVKTD----SQGRVWIGTR-DG---------LSRYDEEKDIFQ-NFFYEKNGKHLQV-NGIEEISPEQLLISTP-EGL  152 (795)
T ss_dssp             EEEEEEC----TTSCEEEEES-SC---------EEEEETTTTEEE-EECCEETTEECCC-CEEEEEETTEEEEEET-TEE
T ss_pred             eeEEEEC----CCCCEEEEeC-Cc---------hheeCCCCCeEE-eccccccCCCceE-EEEEECCCCCEEEEEC-Cce
Confidence            4888888    7776554433 11         334887654422 2222111    14 778777 444444554 458


Q ss_pred             EEEECCCCcE---------------E-------EEEeeCCCcEEEEeCCCCeEEEEe-eCCCcceEEEEe-cCCEEEEEe
Q psy18018        104 KVWSATTGKC---------------L-------LVSGSRDATLRVWHIESGECLHVL-VGHLAAVRCVQY-DGKLVVSGA  159 (635)
Q Consensus       104 ~vWd~~~~~~---------------l-------l~~~~~dg~i~vwd~~~~~~~~~l-~~h~~~v~~l~~-~~~~l~s~~  159 (635)
                      ..||.++++.               +       +..++.++-+..|+.++++..... ..+...|.++.. ....|..++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt  232 (795)
T 4a2l_A          153 IMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT  232 (795)
T ss_dssp             EEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE
T ss_pred             EEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE
Confidence            8888765321               1       444665556888888776544321 123567888887 455566666


Q ss_pred             CCCeEEEEeCCCccceeeccc-------cceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-------CCCC
Q psy18018        160 YDYMVKIWNPDTEECLHAELQ-------ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG-------HTGG  225 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------h~~~  225 (635)
                      .++-+..||..+++.......       ....+........+.|.+|+.+ -|.+||..+++.......       ....
T Consensus       233 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (795)
T 4a2l_A          233 EGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS  311 (795)
T ss_dssp             BSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred             CCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence            555588999887654322111       1233444444556778888876 588999887765433211       2356


Q ss_pred             eEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        226 VWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       226 v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      |.++..+ ...+..|+.++-|..++.............                                          
T Consensus       312 i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~------------------------------------------  349 (795)
T 4a2l_A          312 VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIP------------------------------------------  349 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCT------------------------------------------
T ss_pred             EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCC------------------------------------------
Confidence            8888886 456777888788888876543211000000                                          


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC---
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG---  381 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~---  381 (635)
                                                    ............+...++| .|.+|+.++-|..|+..+++.......   
T Consensus       350 ------------------------------~~~~l~~~~V~~i~~d~~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~  398 (795)
T 4a2l_A          350 ------------------------------YKNSLSDNVVSCIVEDKDK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDE  398 (795)
T ss_dssp             ------------------------------TSSSCSCSSEEEEEECTTS-CEEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred             ------------------------------CCCCCCCCeeEEEEECCCC-CEEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence                                          0000001111222233344 466688777799999877654432211   


Q ss_pred             -----CCcceeEEEEe-CCE-EEEEeCCCcEEEEEccCCccee------------EEEE-EeeCCcEEEEEeCCCcEEEE
Q psy18018        382 -----HQSLTSGMELR-NNI-LVSGNADSTVKVWDIVSGTKKL------------MFRI-CLFDGVHVVSGSLDTSIRVW  441 (635)
Q Consensus       382 -----~~~~v~~l~~~-~~~-l~s~~~dg~i~iwd~~~~~~~~------------~~~~-~~~~~~~l~~~~~d~~i~~~  441 (635)
                           ....|.++..+ ... |..|+.++.+..+|..+++...            ...+ ..++|. |..|+.+ -+..|
T Consensus       399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~~-Gl~~~  476 (795)
T 4a2l_A          399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTLS-ALVRF  476 (795)
T ss_dssp             ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEESS-CEEEE
T ss_pred             cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEecC-ceeEE
Confidence                 23568888886 344 8888887889999887654221            1112 233444 5555554 58889


Q ss_pred             eCCCCceeeeecc------CCccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecC----CCcccccEEEEEec-C
Q psy18018        442 EAESGNLRHTLMG------HQSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSG----RNKHQSAVTCLQFN-S  509 (635)
Q Consensus       442 d~~~~~~~~~~~~------~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~-~  509 (635)
                      |..+++.......      ....|.++..+. ..+..|+. +-+..||..+++.  .+..    .......|.++..+ .
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~  553 (795)
T 4a2l_A          477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASN  553 (795)
T ss_dssp             ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTT
T ss_pred             eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCC
Confidence            9887655332211      235678887753 34445555 4588999877665  2221    11234568888884 2


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       510 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ..+..++.. -+..||..+++... +....  .     .....|.++...++|++.+++ . +-+..||.++++. ..+.
T Consensus       554 g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~--g-----l~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~-~~~~  621 (795)
T 4a2l_A          554 GIIWVGTRE-GFYCFNEKDKQIKR-YNTTN--G-----LPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKF-RNFT  621 (795)
T ss_dssp             SCEEEEESS-CEEEEETTTTEEEE-ECGGG--T-----CSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE-EEEC
T ss_pred             CCEEEEeCC-CceeECCCCCcEEE-eCCCC--C-----CchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcE-EEcC
Confidence            334445545 48889987765432 21100  0     013457788888889877755 3 4588899887653 3442


Q ss_pred             eccCCCCCceE--EEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        590 SLDSGGSGGVV--WRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       590 ~~~~~~~~~~i--~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ..+. -....+  .++...++|++.+ |+.+|     +..+|++
T Consensus       622 ~~dG-l~~~~f~~~~~~~~~~G~l~~-g~~~G-----l~~~~p~  658 (795)
T 4a2l_A          622 ESDG-LQSNQFNTASYCRTSVGQMYF-GGING-----ITTFRPE  658 (795)
T ss_dssp             GGGT-CSCSCEEEEEEEECTTSCEEE-EETTE-----EEEECGG
T ss_pred             CcCC-CccccCccCceeECCCCeEEE-ecCCc-----eEEEcHH
Confidence            2111 112222  5777788887655 66667     4455543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.50  E-value=2.6e-11  Score=115.59  Aligned_cols=292  Identities=13%  Similarity=0.111  Sum_probs=160.4

Q ss_pred             ceEEEEecCCEEEEEe---------CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCC---C--cEEEEE
Q psy18018        144 AVRCVQYDGKLVVSGA---------YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDD---N--TLKVWS  209 (635)
Q Consensus       144 ~v~~l~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g--~i~vwd  209 (635)
                      .+...++||++++...         .++.|.+||+.+++... +   .........+++.+|+..+.+   +  .|.+||
T Consensus        16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~   91 (347)
T 2gop_A           16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD   91 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence            3444555888887653         36789999999876432 2   233334555667788877653   2  488889


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        210 ATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       210 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      +.+++.......+.  +..+.|+  ++.|+.++.+..      .....                                
T Consensus        92 ~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~------~~~~~--------------------------------  131 (347)
T 2gop_A           92 LETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRR------EDEDF--------------------------------  131 (347)
T ss_dssp             TTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCC------C------------------------------------
T ss_pred             CCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCC------CcCCc--------------------------------
Confidence            88887665554333  7788884  666776654310      00000                                


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                                                                            ....-+.+..+|..+. ......|++
T Consensus       132 ------------------------------------------------------~~~~~~~~~~~g~~~~-~~~~~~l~~  156 (347)
T 2gop_A          132 ------------------------------------------------------IFEDDVPAWFDDLGFF-DGEKTTFWI  156 (347)
T ss_dssp             -----------------------------------------------------------CCCC----------CEEEEEE
T ss_pred             ------------------------------------------------------EEEcccceeecCcccc-cCccceEEE
Confidence                                                                  0000000111221111 122356889


Q ss_pred             EEccCCceEEeeeCCCcceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeC-CCcEEEEeCCC
Q psy18018        368 WEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSL-DTSIRVWEAES  445 (635)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~  445 (635)
                      |++.+++.+..+.. . .+..+.|+++ +++++..++.         .         +.       .. ...|.++|  +
T Consensus       157 ~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~---------~---------~~-------~~~~~~l~~~d--~  207 (347)
T 2gop_A          157 FDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREI---------I---------PQ-------YFKFWDIYIWE--D  207 (347)
T ss_dssp             EETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCS---------S---------CC-------SSCCEEEEEEE--T
T ss_pred             EECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccc---------c---------cc-------ccccccEEEeC--C
Confidence            99988776344443 3 5666666532 3333322210         0         00       00 11233444  3


Q ss_pred             CceeeeeccCCccEEEEEecCCEEEEEeCC--------CcEEEEECCCCceeEEecCCCcccccEEE-EEe-cCCEEEEE
Q psy18018        446 GNLRHTLMGHQSLTSGMELRNNILVSGNAD--------STVKVWDIVSGQCLQTLSGRNKHQSAVTC-LQF-NSRFVITS  515 (635)
Q Consensus       446 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~~~  515 (635)
                      ++. ..+..+ ..+..++++++.++.++.+        ..|.+||  +++.......   +...+.. +.| ++ +++++
T Consensus       208 ~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~sdg-~~~~~  279 (347)
T 2gop_A          208 GKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKDGK-VYFTL  279 (347)
T ss_dssp             TEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEETTE-EEEEE
T ss_pred             Cce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---CCcccCCccEEcCc-EEEEE
Confidence            333 233333 4555567788877776644        3688888  5554433333   4556665 667 55 88899


Q ss_pred             eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE-EEEeCCCCceEEee
Q psy18018        516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV-KLWDVKTGEFIRNL  588 (635)
Q Consensus       516 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v-~iwd~~~~~~~~~~  588 (635)
                      +.++.+++| +.+++.....            .+...|.+++|+|  .++++++.++.. .||.+. ++ ...+
T Consensus       280 ~~~~~~~l~-~~~g~~~~~~------------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~l  336 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEIKPIA------------KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQL  336 (347)
T ss_dssp             EETTEEEEE-EESSSEEEEE------------CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEEC
T ss_pred             ecCCcEEEE-EcCCceEEEe------------cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEe
Confidence            999999999 8755432211            2356788899999  677777766654 777776 55 3344

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.50  E-value=4.6e-11  Score=112.52  Aligned_cols=180  Identities=10%  Similarity=0.049  Sum_probs=115.4

Q ss_pred             cceEEEEEecCCCCCCCceeecCCcchheee----------------ccceeeeeeecCCCCCCceee-ccCcceEEEEE
Q psy18018         26 DHVITCLQFSGKSFPCESFIRSSSPWKALFM----------------SHRSVEINWRTRPIKDPKVLK-GHDDHVITCLQ   88 (635)
Q Consensus        26 ~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~----------------~~~~~~~iwd~~~~~~~~~l~-~h~~~vi~~~~   88 (635)
                      +.+ ++|||+    |+|+++++...++.+..                ..+..+.+||..+++.+..+. ++-..+ ..++
T Consensus        24 ~~v-~~va~d----~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p-~gia   97 (329)
T 3fvz_A           24 GQV-SGVALD----SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP-HGLS   97 (329)
T ss_dssp             SCE-EEEEEC----TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE-EEEE
T ss_pred             CCc-eEEEEC----CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc-eEEE
Confidence            456 899999    99999988776532110                011346679998888776655 344456 8999


Q ss_pred             Ec--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEe---------eCCCcceEEEEe---cCCE
Q psy18018         89 FS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL---------VGHLAAVRCVQY---DGKL  154 (635)
Q Consensus        89 ~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l---------~~h~~~v~~l~~---~~~~  154 (635)
                      ++  |+++++...++.|++||......                    .+..+         .++......+++   ++..
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~--------------------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEG--------------------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSC--------------------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeE--------------------EEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence            98  88888888888899998753211                    11222         234556788999   3566


Q ss_pred             EEEEe-CCCeEEEEeCCCccceeeccccc----------eeEEeeec-cC-CCEEEEEeCCCcEEEEECCCCeEEEEEe-
Q psy18018        155 VVSGA-YDYMVKIWNPDTEECLHAELQET----------EVELSHGY-AL-RSRIVSGSDDNTLKVWSATTGKCLRTLI-  220 (635)
Q Consensus       155 l~s~~-~dg~v~iwd~~~~~~~~~~~~~~----------~~~~~~~~-~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~-  220 (635)
                      +++.+ .++.|++|+ .+++.+..+....          .....+.+ ++ +..+++...++.|++||..+++.+..+. 
T Consensus       158 yv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~  236 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH  236 (329)
T ss_dssp             EEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence            66665 699999999 4555544432111          11233333 34 4455555677899999998888888774 


Q ss_pred             -CCCCCeEEEEee
Q psy18018        221 -GHTGGVWSSQMA  232 (635)
Q Consensus       221 -~h~~~v~~~~~~  232 (635)
                       .+...+.++++.
T Consensus       237 ~~~~~~~~~~~~~  249 (329)
T 3fvz_A          237 ASFGRNVFAISYI  249 (329)
T ss_dssp             TTTTTCEEEEEEE
T ss_pred             cccCCCcceeeec
Confidence             344455555544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=1.4e-11  Score=115.07  Aligned_cols=268  Identities=14%  Similarity=0.059  Sum_probs=180.4

Q ss_pred             EEecCcEEEEecC-----CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEcc
Q psy18018        349 FQFDGVHVVSGSL-----DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIV  411 (635)
Q Consensus       349 ~s~~~~~l~~~~~-----dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~  411 (635)
                      ..|+++.+++...     ++.|.++|..+++.+..+.....+ . ++++  ++.++++.          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            4688998888866     579999999999999888765555 3 7776  55666554          36789999999


Q ss_pred             CCcceeEEE----------------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEe-cCCEEEEE
Q psy18018        412 SGTKKLMFR----------------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSG  472 (635)
Q Consensus       412 ~~~~~~~~~----------------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~  472 (635)
                      +.+......                .++|||++++++..  ++.|.++|+.+++.+.++....  ...+.+ ..+.+++.
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g~~~~~~~  195 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTAPDTFFMH  195 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCCCceeEEE
Confidence            988765542                47889999998874  6899999999999998885432  123333 45678888


Q ss_pred             eCCCcEEEEECCC-CceeEEecCC-CcccccEE-EEEe---cCCEEEEEeCCCcEEEEECCCCce--eeeeccceecCce
Q psy18018        473 NADSTVKVWDIVS-GQCLQTLSGR-NKHQSAVT-CLQF---NSRFVITSSDDGTVKLWDVKTGEF--STPLMSSFILNPF  544 (635)
Q Consensus       473 ~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~v~-~~~~---~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~  544 (635)
                      +.||++.+.++.+ ++........ .....++. ...|   +|++++ .+.+|.+++.|+.++..  ..+... ......
T Consensus       196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~-~~~~~~  273 (386)
T 3sjl_D          196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA-LTEAER  273 (386)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES-SCHHHH
T ss_pred             CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec-cccccc
Confidence            9999999999976 5543222110 00112221 1233   465544 55689999999976642  222210 000000


Q ss_pred             eEEeccCceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEE
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCA  613 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~  613 (635)
                      ...........++++|+++.|.....          .+.|.+.|+++++.++.+.      ...++++|+|++|++ +|+
T Consensus       274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------vg~~~~~lavs~D~~~~ly  347 (386)
T 3sjl_D          274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDSINVSQDEKPLLY  347 (386)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECSSSSCEEE
T ss_pred             cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE------CCCCcceEEECCCCCeEEE
Confidence            00001233445778899888777643          2579999999999999884      235789999999997 666


Q ss_pred             Ec-cCCCeeEeEEEEEeeec
Q psy18018        614 VG-SRNGTEETKLLVLDFDV  632 (635)
Q Consensus       614 ~~-~~dg~~~~~l~~~d~~~  632 (635)
                      +. ..++.    |.++|...
T Consensus       348 ~tn~~~~~----VsViD~~t  363 (386)
T 3sjl_D          348 ALSTGDKT----LYIHDAES  363 (386)
T ss_dssp             EEETTTTE----EEEEETTT
T ss_pred             EEcCCCCe----EEEEECCC
Confidence            64 45777    67777653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.49  E-value=5.1e-10  Score=106.40  Aligned_cols=195  Identities=8%  Similarity=-0.030  Sum_probs=113.1

Q ss_pred             eEEEEecCcEEEEecC--CCeEEEEEccCCceEEe-eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        346 LFGFQFDGVHVVSGSL--DTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      .+.++|||++|+++..  ++.|.++| .+++.+.. +.... .+......+..+++.+.||.+..++. +++        
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~--------  197 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG--------  197 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEEEcCCCCEEEEEC-CCc--------
Confidence            4569999999998874  47899999 98888766 54321 11111112334444555555555555 332        


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeeeec-----cCCccE-E--EEEecCCEEEEEeCCCcEEEEECCCCc--eeEEe
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-----GHQSLT-S--GMELRNNILVSGNADSTVKVWDIVSGQ--CLQTL  492 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v-~--~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~  492 (635)
                                               ......     ....++ .  ....++..++..+..+.+.+.|+....  .+..+
T Consensus       198 -------------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          198 -------------------------AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             -------------------------EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence                                     221110     001111 0  112223333333356677777775442  12222


Q ss_pred             cCCC-------cccccE--EEEEecCCEEEEEeC----------CCcEEEEECCCCceeeeeccceecCceeEEeccCce
Q psy18018        493 SGRN-------KHQSAV--TCLQFNSRFVITSSD----------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL  553 (635)
Q Consensus       493 ~~~~-------~~~~~v--~~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v  553 (635)
                      ....       ......  ..+..+++.++++..          ++.|.++|..+++.+..+..            ....
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------------g~~p  320 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------------GHDV  320 (373)
T ss_pred             eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------------CCCc
Confidence            1100       011112  223336676666543          35799999999998877753            3357


Q ss_pred             ecccccCCCe-EEEEec-CCCeEEEEeCCCCceEEee
Q psy18018        554 LCPHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       554 ~~~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~  588 (635)
                      .+++|+|||+ +++++. .++.|.++|+.+++.+..+
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            8899999999 777776 5899999999999999884

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.48  E-value=4.7e-08  Score=104.03  Aligned_cols=455  Identities=10%  Similarity=0.054  Sum_probs=257.1

Q ss_pred             EEEEEEc-CCEEEEeeCCCcEEEEECCCCcEE-----------------------EEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018         84 ITCLQFS-GSRIVSGSDDNTLKVWSATTGKCL-----------------------LVSGSRDATLRVWHIESGECLHVLV  139 (635)
Q Consensus        84 i~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~l-----------------------l~~~~~dg~i~vwd~~~~~~~~~l~  139 (635)
                      |.++..+ ...|-.|+.+| +..||..+++..                       +..++. +.+..||.++++......
T Consensus        90 I~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~  167 (795)
T 4a2l_A           90 SRIVKTDSQGRVWIGTRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP-EGLIMFDIKESKFIDDSF  167 (795)
T ss_dssp             EEEEEECTTSCEEEEESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET-TEEEEEETTTTEEECSSS
T ss_pred             eeEEEECCCCCEEEEeCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC-CceEEEECCCCEEEeccC
Confidence            4899888 44455566555 788887654321                       233333 347777776655332111


Q ss_pred             CC-Ccc-eEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeecc-ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeE
Q psy18018        140 GH-LAA-VRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC  215 (635)
Q Consensus       140 ~h-~~~-v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  215 (635)
                      ++ ... |.++.. ....|..++.++-+..|+..+++...... .....+........+.+.+++.++-+..||..+++.
T Consensus       168 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~  247 (795)
T 4a2l_A          168 STAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEI  247 (795)
T ss_dssp             CHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEE
T ss_pred             CCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeE
Confidence            11 123 888877 35566667776568899987765432211 112223333344567788888665699999887665


Q ss_pred             EEEEeC-------CCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        216 LRTLIG-------HTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       216 ~~~~~~-------h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      ......       ....|.++..+ ...+..|+.+ -+.+|+..+...........                        
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~------------------------  302 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPV------------------------  302 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTT------------------------
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCC------------------------
Confidence            433221       13568888885 4456666655 57788765433211000000                        


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV  367 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v  367 (635)
                                                                     ............+...++|. +..|+.++-|..
T Consensus       303 -----------------------------------------------~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~  334 (795)
T 4a2l_A          303 -----------------------------------------------ENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNY  334 (795)
T ss_dssp             -----------------------------------------------STTSCSSSCEEEEEECTTSC-EEEEESSSCEEE
T ss_pred             -----------------------------------------------CCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEE
Confidence                                                           00000111122233334454 666777777888


Q ss_pred             EEccCCceEEeee------CCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCccee----------------EEEE-Ee
Q psy18018        368 WEAESGNLRHTLM------GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKL----------------MFRI-CL  423 (635)
Q Consensus       368 ~~~~~~~~~~~~~------~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~~~-~~  423 (635)
                      |+..++.......      .....|.++..+ ...|..|+.++-|..|+..++....                ...+ ..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            8876554322111      123468888887 4567788888888888876543211                1122 23


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeec----cCCccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecC---C
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSG---R  495 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~  495 (635)
                      .++..|..|+.++-+..+|..+++...-..    .....|.++..+. ..|..|+.+ -+..||..+++.......   .
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~  493 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFTTIEKEKDGT  493 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEEECCBCTTCC
T ss_pred             CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEEEcccccccc
Confidence            455547778887789999998776543221    1345688888753 344555554 589999887654332211   0


Q ss_pred             CcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        496 NKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       496 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                      ......|.++..+ ...+..|+. +-|..||..+++.  .+.......    ......|.++...++|++.+... . -+
T Consensus       494 ~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~----~l~~~~i~~i~~d~~g~lWigT~-~-Gl  564 (795)
T 4a2l_A          494 PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVS----NVTKLFTNCIYEASNGIIWVGTR-E-GF  564 (795)
T ss_dssp             BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSC----GGGGSCEEEEEECTTSCEEEEES-S-CE
T ss_pred             ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCC----CCCCCeeEEEEECCCCCEEEEeC-C-Cc
Confidence            1123568888884 333444555 4588899877654  221100000    01245688888888998766443 3 48


Q ss_pred             EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ..||..+++.. .+... ..-....|.++...++|.+.+++ .+|     |..+|++
T Consensus       565 ~~~d~~~~~~~-~~~~~-~gl~~~~i~~i~~d~~g~lWi~t-~~G-----l~~~~~~  613 (795)
T 4a2l_A          565 YCFNEKDKQIK-RYNTT-NGLPNNVVYGILEDSFGRLWLST-NRG-----ISCFNPE  613 (795)
T ss_dssp             EEEETTTTEEE-EECGG-GTCSCSCEEEEEECTTSCEEEEE-TTE-----EEEEETT
T ss_pred             eeECCCCCcEE-EeCCC-CCCchhheEEEEECCCCCEEEEc-CCc-----eEEEcCC
Confidence            88998776543 33211 12234569999999999876655 456     4555543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=4.3e-11  Score=123.43  Aligned_cols=162  Identities=15%  Similarity=0.220  Sum_probs=108.6

Q ss_pred             cEEEEeCCCCceeeeecc--CC--------cc-EEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCCc-----
Q psy18018        437 SIRVWEAESGNLRHTLMG--HQ--------SL-TSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNK-----  497 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~--~~--------~~-v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----  497 (635)
                      .|..+|..+|+.+..++.  |.        .+ +.....++   +.++.++.+|.++++|..+++.+..+.....     
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            599999999998877664  21        12 22333456   6899999999999999999998877653110     


Q ss_pred             ---ccccE------------------------EEEEe--cCCEEEEEeC-------------------------------
Q psy18018        498 ---HQSAV------------------------TCLQF--NSRFVITSSD-------------------------------  517 (635)
Q Consensus       498 ---~~~~v------------------------~~~~~--~~~~l~~~~~-------------------------------  517 (635)
                         ...++                        ..+++  +..++++...                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence               00001                        02344  3556665432                               


Q ss_pred             ------------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018        518 ------------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       518 ------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                                  .|.|..||+.+++.+.....            ..++....++.++.++++++.||.+++||.++|+.+
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEE------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCC------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence                        27799999999987766543            233445556678888888999999999999999999


Q ss_pred             EeeeeccCCCCCceEEEEEeCCCCe-EEEE
Q psy18018        586 RNLVSLDSGGSGGVVWRIRASETKL-VCAV  614 (635)
Q Consensus       586 ~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~  614 (635)
                      ..+..    ++.....-+.|+.+|+ ++++
T Consensus       512 w~~~~----~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          512 WEAPT----GTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             EEEEC----SSCCCSCCEEEEETTEEEEEE
T ss_pred             eeeeC----CCCcccCCEEEEeCCEEEEEE
Confidence            98853    2222223445668887 4444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.48  E-value=6.1e-11  Score=122.51  Aligned_cols=164  Identities=15%  Similarity=0.174  Sum_probs=106.1

Q ss_pred             cEEEEeCCCCceeeeecc--CC-------ccE--EEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCC------
Q psy18018        437 SIRVWEAESGNLRHTLMG--HQ-------SLT--SGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRN------  496 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~--~~-------~~v--~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------  496 (635)
                      .|..+|..+|+.+..++.  |.       ...  ..+.++++   .++.++.+|.++++|..+++.+.......      
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            499999999999887764  22       111  12334554   78899999999999999999875443210      


Q ss_pred             -------------------cccccE-----------EEEEe--cCCEEEEEeC---------------------------
Q psy18018        497 -------------------KHQSAV-----------TCLQF--NSRFVITSSD---------------------------  517 (635)
Q Consensus       497 -------------------~~~~~v-----------~~~~~--~~~~l~~~~~---------------------------  517 (635)
                                         .....+           ..+++  +..++++...                           
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                               000000           01333  3345554421                           


Q ss_pred             ------------------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        518 ------------------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       518 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                                        +|.|+.||+.+++.+......            .+...-.++..+.++++++.||.++.||.
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------------~~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------------TIFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------------CCccCccceECCCEEEEECCCCcEEEEEC
Confidence                              377999999999877665432            23333456667889999999999999999


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS  616 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~  616 (635)
                      ++|+.+.++..    +......-+.|+.||+ |+++.+
T Consensus       504 ~tG~~lw~~~~----~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          504 DTGEKLWEQPA----ASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             TTCCEEEEEEC----SSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCccceeeeC----CCCcccCceEEEECCEEEEEEEe
Confidence            99999998852    2222223356678887 555443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.47  E-value=1e-10  Score=107.89  Aligned_cols=235  Identities=11%  Similarity=0.174  Sum_probs=147.9

Q ss_pred             CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc------cceeEEeeec-cCCCEEEEEeC--CCcEEEE
Q psy18018        140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ------ETEVELSHGY-ALRSRIVSGSD--DNTLKVW  208 (635)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~-~~~~~l~~~~~--dg~i~vw  208 (635)
                      +|-....++++  +++.+++...++.|.+||.+ ++.+..+..      +........+ .+++.++++..  ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            45567889998  67888888889999999987 444443322      1122333344 45566666653  7899999


Q ss_pred             ECCCCeEEEEEe-CCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018        209 SATTGKCLRTLI-GHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI  285 (635)
Q Consensus       209 d~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (635)
                      | .+++.+..+. .+...+..++++  ++.+++...++.|.+|+.........                           
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~---------------------------  157 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF---------------------------  157 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE---------------------------
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEe---------------------------
Confidence            9 6677777764 344578888885  67777777889999998653211000                           


Q ss_pred             eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018        286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI  365 (635)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  365 (635)
                                                                        ........+..++++++++.+++...++.|
T Consensus       158 --------------------------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  187 (286)
T 1q7f_A          158 --------------------------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAHCV  187 (286)
T ss_dssp             --------------------------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             --------------------------------------------------CCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence                                                              000011223457788999888887888999


Q ss_pred             EEEEccCCceEEeeeCC--CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCC-cEEEEe
Q psy18018        366 RVWEAESGNLRHTLMGH--QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDT-SIRVWE  442 (635)
Q Consensus       366 ~v~~~~~~~~~~~~~~~--~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d  442 (635)
                      ++|+.. ++.+..+..+  ...+..++++                               ++|+.+++...++ .|.+|+
T Consensus       188 ~~~~~~-g~~~~~~~~~g~~~~p~~i~~d-------------------------------~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          188 KVFNYE-GQYLRQIGGEGITNYPIGVGIN-------------------------------SNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             EEEETT-CCEEEEESCTTTSCSEEEEEEC-------------------------------TTCCEEEEECSSSCEEEEEC
T ss_pred             EEEcCC-CCEEEEEccCCccCCCcEEEEC-------------------------------CCCCEEEEeCCCCEEEEEEC
Confidence            999974 5555555432  2344455543                               4454455554454 677777


Q ss_pred             CCCCceeeeeccCCc--cEEEEEec--CCEEEEEeCCCcEEEEECCCCc
Q psy18018        443 AESGNLRHTLMGHQS--LTSGMELR--NNILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       443 ~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~  487 (635)
                      . +++.+..+..+..  .+.+++++  ++++++ +.|+.|++|++....
T Consensus       236 ~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          236 Q-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             T-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             C-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            4 3555555544332  35566664  555555 679999999986543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.46  E-value=1.2e-10  Score=120.16  Aligned_cols=93  Identities=14%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             CcEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEE-E
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFV-I  513 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~  513 (635)
                      +.|..||+.+++.+.++..... .-..+...+.+++.++.||.+++||.++++.+..+...............+|+.+ +
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            7899999999999888764322 1123555788899999999999999999999999875332222222234567644 4


Q ss_pred             EEeC----------------CCcEEEEECCC
Q psy18018        514 TSSD----------------DGTVKLWDVKT  528 (635)
Q Consensus       514 ~~~~----------------d~~i~vwd~~~  528 (635)
                      +.+.                .+.+..|.+..
T Consensus       537 ~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          537 VAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EeccCCccccccccccccCCCCeEEEEeccc
Confidence            3222                35677777763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.46  E-value=1.2e-10  Score=122.38  Aligned_cols=264  Identities=12%  Similarity=0.020  Sum_probs=168.7

Q ss_pred             EecCcEEEEecCC-----CeEEEEEccCCceEEeee------CCCcceeEEEEe--CCEEEEEeCCC-----cEEEEEcc
Q psy18018        350 QFDGVHVVSGSLD-----TSIRVWEAESGNLRHTLM------GHQSLTSGMELR--NNILVSGNADS-----TVKVWDIV  411 (635)
Q Consensus       350 s~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~------~~~~~v~~l~~~--~~~l~s~~~dg-----~i~iwd~~  411 (635)
                      .|+|++++....+     +.+.+.+...++....+.      +|...+..++|+  ++.|+.+..++     .|++||+.
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            4888887754432     234444444444332221      233467788887  56776655433     89999999


Q ss_pred             CCcceeEE--------EEEeeCCcEEEEEeCCCc----------------EEEEeCCCCce----eeeeccCCccEEEEE
Q psy18018        412 SGTKKLMF--------RICLFDGVHVVSGSLDTS----------------IRVWEAESGNL----RHTLMGHQSLTSGME  463 (635)
Q Consensus       412 ~~~~~~~~--------~~~~~~~~~l~~~~~d~~----------------i~~~d~~~~~~----~~~~~~~~~~v~~~~  463 (635)
                      +++.....        ..++|||+.|+.+..++.                |++|++.+++.    +.....|...+..+.
T Consensus       160 tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          160 GAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            88754321        247899999999988766                99999988763    222223445555555


Q ss_pred             e--cCCEEEEEeC-----CCcEEEEECCC------Cc-eeEEecCCCcccccE-EEEEecCCEEEEEeCC----CcEEEE
Q psy18018        464 L--RNNILVSGNA-----DSTVKVWDIVS------GQ-CLQTLSGRNKHQSAV-TCLQFNSRFVITSSDD----GTVKLW  524 (635)
Q Consensus       464 ~--~~~~l~s~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~d----~~i~vw  524 (635)
                      +  ++++|+..+.     +..|++||+.+      +. ....+..   +...+ ..+..+|+.|+..+.+    +.|.+|
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID---NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC---SSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC---CCCcEEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence            5  6777776654     56899999976      43 3444544   22222 3345578877766543    369999


Q ss_pred             ECCCCce--eeeeccceecCceeEEecc--CceecccccCCCeEEEEecCCCe--EEEEeCCCCceEEeeeeccCCCCCc
Q psy18018        525 DVKTGEF--STPLMSSFILNPFYFLIYS--QPLLCPHLQFNSRFVITSSDDGT--VKLWDVKTGEFIRNLVSLDSGGSGG  598 (635)
Q Consensus       525 d~~~~~~--~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~  598 (635)
                      |+.++..  ...+..           +.  ..+..++|++++.++++...|+.  |.+||+.+|+.+..+.     .+.+
T Consensus       317 d~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~-----~~~~  380 (710)
T 2xdw_A          317 DFTDPEESKWKVLVP-----------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP-----LEVG  380 (710)
T ss_dssp             ETTSCCGGGCEEEEC-----------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-----CCSS
T ss_pred             eCCCCCcccceeccC-----------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC-----CCCc
Confidence            9987642  122211           22  25677888888899999988884  6667877888777763     4467


Q ss_pred             eEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        599 VVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      .+..+.++|++..|+....+..-.-.+|.+|+..
T Consensus       381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            8999999999976664433332234588888754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=7.3e-10  Score=102.99  Aligned_cols=264  Identities=10%  Similarity=-0.012  Sum_probs=172.7

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEe-eeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc---
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK---  415 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~---  415 (635)
                      ..+..++++++|+.+++...++.|..|+.. ++.... ...+...+.+++++  +.++++...++.|..|+......   
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~   93 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYT   93 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEe
Confidence            345567788899877776668899999988 554332 22345678888886  45666655678898888752211   


Q ss_pred             ------eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC
Q psy18018        416 ------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG  486 (635)
Q Consensus       416 ------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  486 (635)
                            ......+.+++..+++...++.|..||. +++.... ...+...+.++.++  ++++++...++.|..||. ++
T Consensus        94 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g  171 (299)
T 2z2n_A           94 LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG  171 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred             CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence                  1111234567777777667889999998 5554432 22344567777775  456666666789999998 66


Q ss_pred             ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                      +.... ... .....+..+++  +++++++...++.|.+||. +++... +...         .....+.+++++++|++
T Consensus       172 ~~~~~-~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~---------~~~~~~~~i~~~~~g~l  238 (299)
T 2z2n_A          172 DITEF-KIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP---------TPNARPHAITAGAGIDL  238 (299)
T ss_dssp             CEEEE-ECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS---------STTCCEEEEEECSTTCE
T ss_pred             cEEEe-eCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC---------CCCCCceeEEECCCCCE
Confidence            55432 111 13345777888  4676666666789999998 665332 1110         12356788999999998


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      .++...++.|..||. +++ +..+..   ..+...+.++++ ++|++.++...++     ++.+|++.
T Consensus       239 ~v~~~~~~~i~~~d~-~g~-~~~~~~---~~~~~~~~~i~~-~~g~l~v~~~~~~-----l~~~~~~~  295 (299)
T 2z2n_A          239 WFTEWGANKIGRLTS-NNI-IEEYPI---QIKSAEPHGICF-DGETIWFAMECDK-----IGKLTLIK  295 (299)
T ss_dssp             EEEETTTTEEEEEET-TTE-EEEEEC---SSSSCCEEEEEE-CSSCEEEEETTTE-----EEEEEEC-
T ss_pred             EEeccCCceEEEECC-CCc-eEEEeC---CCCCCccceEEe-cCCCEEEEecCCc-----EEEEEcCc
Confidence            777767889999998 454 333321   233467899999 9998877766444     66777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=1.9e-11  Score=111.80  Aligned_cols=234  Identities=10%  Similarity=0.002  Sum_probs=142.4

Q ss_pred             CCceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        343 VPDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      .+..++++++++.++ +...++.|..|+..+.........+...+.+++++                             
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-----------------------------   75 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-----------------------------   75 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC-----------------------------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC-----------------------------
Confidence            455677888998776 54678899999876544322212222334445543                             


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ  499 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  499 (635)
                        ++++.+++.. ++.|..||................+.++.++  ++++++...++.|.+|+..+.........   ..
T Consensus        76 --~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~  149 (270)
T 1rwi_B           76 --GAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---GL  149 (270)
T ss_dssp             --TTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---SC
T ss_pred             --CCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---cC
Confidence              3333222222 5556666655433221111222456677764  56777767788999998665443322211   22


Q ss_pred             ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       500 ~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      ..+..+++  +++++++...++.|.+||............           ....+..++++++|.++++...++.|.+|
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-----------DITAPWGIAVDEAGTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-----------SCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-----------CCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence            34556777  577777777788999999887654322111           12456789999999888888788999999


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      |..........     ..+...+.+++++++|+++++...++.    |..++..
T Consensus       219 ~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~----v~~~~~~  263 (270)
T 1rwi_B          219 LAGSTTSTVLP-----FTGLNTPLAVAVDSDRTVYVADRGNDR----VVKLTSL  263 (270)
T ss_dssp             CTTCSCCEECC-----CCSCSCEEEEEECTTCCEEEEEGGGTE----EEEECCC
T ss_pred             cCCCCcceeec-----cCCCCCceeEEECCCCCEEEEECCCCE----EEEEcCC
Confidence            98765543211     123356899999999998888888887    5555544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.45  E-value=4.8e-11  Score=124.89  Aligned_cols=196  Identities=11%  Similarity=-0.005  Sum_probs=119.2

Q ss_pred             eEEEEecCcEEEEecCCCe-------------EEEEEccCCc----eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEE
Q psy18018        346 LFGFQFDGVHVVSGSLDTS-------------IRVWEAESGN----LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVW  408 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~-------------i~v~~~~~~~----~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iw  408 (635)
                      .++|+|||+.|+.++.+..             |++|++.++.    ++.....+...+..+.+                 
T Consensus       172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~-----------------  234 (695)
T 2bkl_A          172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL-----------------  234 (695)
T ss_dssp             CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE-----------------
T ss_pred             ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE-----------------
Confidence            4569999999998887665             8999988765    22222223333444443                 


Q ss_pred             EccCCcceeEEEEEeeCCcEEEEEeCCC----cEEEEeCCCCceeeeeccCCccEE-EEEecCCEEEEEe---CCCcEEE
Q psy18018        409 DIVSGTKKLMFRICLFDGVHVVSGSLDT----SIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGN---ADSTVKV  480 (635)
Q Consensus       409 d~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~~---~dg~i~i  480 (635)
                                    +|||++|+..+.++    .|++++..+++.. .+..+...+. .+..++++++...   .++.|.+
T Consensus       235 --------------SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~  299 (695)
T 2bkl_A          235 --------------SRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFE  299 (695)
T ss_dssp             --------------CTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred             --------------CCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEecCCcEEEEECCCCCCCEEEE
Confidence                          46666666655444    5666665555433 3333433333 3334566444433   2578999


Q ss_pred             EECCCCce--eEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECC-CCceeeeeccceecCceeEEeccCceecc
Q psy18018        481 WDIVSGQC--LQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       481 wd~~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      ||+.+++.  ...+... .....+..+++ ++.++++...|+..++|.+. +++....+..          .....+..+
T Consensus       300 ~d~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~----------~~~~~v~~~  368 (695)
T 2bkl_A          300 VDPAKPARASWKEIVPE-DSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQL----------PGVGAASNL  368 (695)
T ss_dssp             EBTTBCSGGGCEEEECC-CSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCC----------SSSSEECCC
T ss_pred             EeCCCCCccCCeEEecC-CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecC----------CCCeEEEEe
Confidence            99987653  2333221 01445677777 56778888899988888665 3443333221          124567788


Q ss_pred             cccCCCeEEEEe----cCCCeEEEEeCCCCce
Q psy18018        557 HLQFNSRFVITS----SDDGTVKLWDVKTGEF  584 (635)
Q Consensus       557 ~~s~~~~~l~~~----~~d~~v~iwd~~~~~~  584 (635)
                      +++||++.++..    ...++|++||+.+++.
T Consensus       369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             BSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            999999877733    3457899999998874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=7e-11  Score=112.59  Aligned_cols=266  Identities=14%  Similarity=0.048  Sum_probs=177.9

Q ss_pred             ecCcEEEEecCC-----CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEccCC
Q psy18018        351 FDGVHVVSGSLD-----TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIVSG  413 (635)
Q Consensus       351 ~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~  413 (635)
                      ++++++++....     +.|.++|..+++.+..+.....+  .++++  ++.++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            467766666553     69999999999999888766555  78886  55565554          4678999999998


Q ss_pred             cceeEEE----------------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec-CCEEEEEeC
Q psy18018        414 TKKLMFR----------------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNA  474 (635)
Q Consensus       414 ~~~~~~~----------------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~  474 (635)
                      +......                .++|||++++++..  ++.|.++|+.+++.+.++.....  ..+.++ ...+++.+.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence            8765543                37889999999874  57899999999999888764322  233443 467778888


Q ss_pred             CCcEEEEECCCCceeEEec-CCCcccccE---EEEEecCCEEEEEeCCCcEEEEECCCCceee--eeccce-ecCceeEE
Q psy18018        475 DSTVKVWDIVSGQCLQTLS-GRNKHQSAV---TCLQFNSRFVITSSDDGTVKLWDVKTGEFST--PLMSSF-ILNPFYFL  547 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~~~~-~~~~~~~~v---~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~-~~~~~~~~  547 (635)
                      ||++.+.+..+++...... .......++   ..+..++..++..+..+.+.+.|........  ...... ....... 
T Consensus       238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~-  316 (426)
T 3c75_H          238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW-  316 (426)
T ss_dssp             TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE-
T ss_pred             CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc-
Confidence            9999999986665543211 000011111   1223356666666778999999987654321  110000 0000000 


Q ss_pred             eccCceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018        548 IYSQPLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS  616 (635)
Q Consensus       548 ~~~~~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~  616 (635)
                       .......++++||++.+.++..          ++.|.+.|+.+++.+..+.      .....++++|+|||+ +|++..
T Consensus       317 -~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~------vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          317 -RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE------LGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             -EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECCSSSCEEEEEE
T ss_pred             -ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE------CCCCcCeEEEccCCCEEEEEEc
Confidence             1122234689999887666532          3579999999999999884      233688999999999 888887


Q ss_pred             -CCCeeEeEEEEEeeec
Q psy18018        617 -RNGTEETKLLVLDFDV  632 (635)
Q Consensus       617 -~dg~~~~~l~~~d~~~  632 (635)
                       .++.    |.++|...
T Consensus       390 ~~s~~----VsVID~~t  402 (426)
T 3c75_H          390 AGTQT----LHIYDAAT  402 (426)
T ss_dssp             TTTTE----EEEEETTT
T ss_pred             CCCCe----EEEEECCC
Confidence             4777    77777654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.42  E-value=1.9e-10  Score=118.86  Aligned_cols=168  Identities=14%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             EEEEecCcEEEEecCCC-------------------eEEEEEccCCceEEeeeC--CC-------cce--eEEEEeCC--
Q psy18018        347 FGFQFDGVHVVSGSLDT-------------------SIRVWEAESGNLRHTLMG--HQ-------SLT--SGMELRNN--  394 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg-------------------~i~v~~~~~~~~~~~~~~--~~-------~~v--~~l~~~~~--  394 (635)
                      .+++|+...++.++.++                   .|..+|..+|+.+..++.  |.       ...  ..+.+.+.  
T Consensus       240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~  319 (689)
T 1yiq_A          240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR  319 (689)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE
Confidence            34556666666666554                   388899999998877754  21       111  12223333  


Q ss_pred             -EEEEEeCCCcEEEEEccCCcceeEE------------------------------------------------EEEeeC
Q psy18018        395 -ILVSGNADSTVKVWDIVSGTKKLMF------------------------------------------------RICLFD  425 (635)
Q Consensus       395 -~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------------------~~~~~~  425 (635)
                       .++.++.+|.+.++|..+++.....                                                ..++|+
T Consensus       320 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~  399 (689)
T 1yiq_A          320 KVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD  399 (689)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             EEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence             7888889999999999888765211                                                124555


Q ss_pred             CcEEEEEeC---------------------------------------------CCcEEEEeCCCCceeeeeccCCccE-
Q psy18018        426 GVHVVSGSL---------------------------------------------DTSIRVWEAESGNLRHTLMGHQSLT-  459 (635)
Q Consensus       426 ~~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~v-  459 (635)
                      ...+++...                                             +|.+..||+.+++.+.++..+.... 
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~  479 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG  479 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence            566665422                                             3779999999999988887654322 


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCccc-ccEEEEEecCC-EEEEE
Q psy18018        460 SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ-SAVTCLQFNSR-FVITS  515 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~l~~~  515 (635)
                      -.+...+.+++.++.||.++.||.++++.+.++....... .+++ ...+|+ |+++.
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t-y~~~G~qyv~~~  536 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVT-YSVDGEQYVTFM  536 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEEEEEEE
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceE-EEECCEEEEEEE
Confidence            2455578899999999999999999999999887633222 3333 345766 44444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.41  E-value=6.6e-11  Score=123.86  Aligned_cols=266  Identities=13%  Similarity=0.008  Sum_probs=166.3

Q ss_pred             EEecCcEEEEecCCC-----eEEEEEccCCceEEeee------CCCcceeEEEEe--CCEEE-----EEeCCCcEEEEEc
Q psy18018        349 FQFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLM------GHQSLTSGMELR--NNILV-----SGNADSTVKVWDI  410 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~------~~~~~v~~l~~~--~~~l~-----s~~~dg~i~iwd~  410 (635)
                      .+|+|.+++....++     .+...+...++....+.      +|...+..++|+  ++.|+     .|+.+..|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            458898887665533     34444444444333332      344568888887  55666     2333468999999


Q ss_pred             cCCcce-e--------EEEEEeeCCcEEEEEeCCCc-------------EEEEeCCCCc----eeeeeccCCccEEEEEe
Q psy18018        411 VSGTKK-L--------MFRICLFDGVHVVSGSLDTS-------------IRVWEAESGN----LRHTLMGHQSLTSGMEL  464 (635)
Q Consensus       411 ~~~~~~-~--------~~~~~~~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~v~~~~~  464 (635)
                      .+++.. .        ....++|||+.|+.++.+..             |++|++.++.    ++.....+...+.++.+
T Consensus       155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            987654 1        23358899999999998776             9999998876    33333345556666666


Q ss_pred             --cCCEEEEEeCCC----cEEEEECCCCceeEEecCCCcccccEEEEE-ecCCEEEEEe---CCCcEEEEECCCCce--e
Q psy18018        465 --RNNILVSGNADS----TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ-FNSRFVITSS---DDGTVKLWDVKTGEF--S  532 (635)
Q Consensus       465 --~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~---~d~~i~vwd~~~~~~--~  532 (635)
                        ++++++.++.++    .|.+|+..+++... +..   +...+.... .++.+++...   .++.|.+||+.+++.  .
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~---~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVK---GVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEE---CSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eec---CCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence              567777766655    67777765554333 332   222233333 4666444443   257899999987652  1


Q ss_pred             eeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC-CCceEEeeeeccCCCCCceEEEEEeCCCCeE
Q psy18018        533 TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK-TGEFIRNLVSLDSGGSGGVVWRIRASETKLV  611 (635)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  611 (635)
                      ..+..+         .....+..++++ ++.++++...|+..+||.+. +++.+..+.    ....+.+..++++||+..
T Consensus       311 ~~l~~~---------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~----~~~~~~v~~~~~s~d~~~  376 (695)
T 2bkl_A          311 KEIVPE---------DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ----LPGVGAASNLMGLEDLDD  376 (695)
T ss_dssp             EEEECC---------CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC----CSSSSEECCCBSCTTCSE
T ss_pred             eEEecC---------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec----CCCCeEEEEeecCCCCCE
Confidence            111111         013346677787 78899999999988888665 466555552    123567888999999987


Q ss_pred             EEEccCCCeeEeEEEEEeeec
Q psy18018        612 CAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       612 l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |+....+..-.-.+|.+|++.
T Consensus       377 l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          377 AYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             EEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEcCCCCCCEEEEEECCC
Confidence            774444333334578887653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.41  E-value=7e-12  Score=117.61  Aligned_cols=139  Identities=9%  Similarity=0.017  Sum_probs=109.0

Q ss_pred             CCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018        455 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTP  534 (635)
Q Consensus       455 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  534 (635)
                      +.. |..+++++++|+++ .++.|++||+.+.........   +...+.++.+....+++++.||.|.+||++++.... 
T Consensus        87 lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~---~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-  160 (388)
T 1xip_A           87 IPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTS---FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-  160 (388)
T ss_dssp             CTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEE---CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             CCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccce---eecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence            555 88999988899988 889999999987765555544   566788888855459999999999999999887532 


Q ss_pred             eccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce--EEeeeecc----CCCCCceEEEEEeCCC
Q psy18018        535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF--IRNLVSLD----SGGSGGVVWRIRASET  608 (635)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~----~~~~~~~i~~l~~s~d  608 (635)
                                    +...|+|++|||+|  ++.|..||++++|+...++.  .+.+...+    ..+|...|.++.|.++
T Consensus       161 --------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          161 --------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             --------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             --------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence                          24589999999999  67788999999999887775  44552211    0136789999999999


Q ss_pred             CeEEEEc
Q psy18018        609 KLVCAVG  615 (635)
Q Consensus       609 ~~~l~~~  615 (635)
                      +++|++-
T Consensus       225 ~~flv~y  231 (388)
T 1xip_A          225 QDFLAVF  231 (388)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            9999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.40  E-value=2.8e-10  Score=119.54  Aligned_cols=226  Identities=11%  Similarity=0.038  Sum_probs=152.3

Q ss_pred             ceEEEEecCcEEEEecCCC-----eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCc-------------
Q psy18018        345 DLFGFQFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADST-------------  404 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~-------------  404 (635)
                      ...+|||||++|+.+..++     .|++||+.+++.......+ ..+..++|+  ++.|+.++.++.             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            4567999999998765533     8999999998876543222 235678886  568888877765             


Q ss_pred             ---EEEEEccCCcce-------------eEEEEEeeCCcEEEEEeC-----CCcEEEEeCCC------Cc-eeeeeccCC
Q psy18018        405 ---VKVWDIVSGTKK-------------LMFRICLFDGVHVVSGSL-----DTSIRVWEAES------GN-LRHTLMGHQ  456 (635)
Q Consensus       405 ---i~iwd~~~~~~~-------------~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~~  456 (635)
                         |.+|++.++...             .....++|||++|+..+.     +..+++||+.+      +. ....+..+.
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~  286 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence               999999876521             123357899999988765     67899999986      43 345555555


Q ss_pred             ccEE-EEEecCCEEEEEeCC----CcEEEEECCCCce--eEEecCCCcccccEEEEEe--cCCEEEEEeCCCc--EEEEE
Q psy18018        457 SLTS-GMELRNNILVSGNAD----STVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT--VKLWD  525 (635)
Q Consensus       457 ~~v~-~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~--i~vwd  525 (635)
                      ..+. .++.+++.++..+.+    +.|.+||+.++..  ...+..+. ....+..+++  ++.++++...|+.  |.+|+
T Consensus       287 ~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          287 EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence            4333 455678866665543    3699999987642  23443311 1125777777  3556777777874  66677


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe----cCCCeEEEEeCCCCc
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS----SDDGTVKLWDVKTGE  583 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~v~iwd~~~~~  583 (635)
                      +.+++....+..           +...+..++++|+++.++..    ...+++..||+.+++
T Consensus       366 ~~~g~~~~~l~~-----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          366 LATGALLKIFPL-----------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTTCCEEEEECC-----------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCCEEEecCC-----------CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            767765544432           24567788899998766533    234789999999887

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.39  E-value=8e-11  Score=111.30  Aligned_cols=305  Identities=13%  Similarity=0.098  Sum_probs=189.9

Q ss_pred             CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEe
Q psy18018        170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGW  248 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w  248 (635)
                      .+++.+.+...+...........++.+++++.++.|..|| .+++.+.....+...+.++..+ ...+..++.+  +..+
T Consensus         7 ~~g~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~   83 (330)
T 3hxj_A            7 NDCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAI   83 (330)
T ss_dssp             -----CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEE
T ss_pred             CCceEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEE
Confidence            3444444443333333334444577888999899999999 8888876655444455666664 5566666655  7777


Q ss_pred             cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018        249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK  328 (635)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (635)
                      |......                                                                     |...
T Consensus        84 d~~g~~~---------------------------------------------------------------------~~~~   94 (330)
T 3hxj_A           84 NPDGTEK---------------------------------------------------------------------WRFD   94 (330)
T ss_dssp             CCCGGGG---------------------------------------------------------------------GGSC
T ss_pred             CCCCcEE---------------------------------------------------------------------EEEE
Confidence            7422110                                                                     0000


Q ss_pred             hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEE
Q psy18018        329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKV  407 (635)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~i  407 (635)
                                ..........+.  +..+.+++.++.+..+|.. ++.......+...+.++... +..+..++.++.+..
T Consensus        95 ----------~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~  161 (330)
T 3hxj_A           95 ----------TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYA  161 (330)
T ss_dssp             ----------C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEE
T ss_pred             ----------CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEE
Confidence                      000000111122  5567788888999999988 87777776666666666666 567888888899999


Q ss_pred             EEccCCcceeEEEE---------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCCc
Q psy18018        408 WDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADST  477 (635)
Q Consensus       408 wd~~~~~~~~~~~~---------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~  477 (635)
                      +|.. ++.......         ...++. +..++  +.+..+| .+++...........+.++..+++ .+..++.++.
T Consensus       162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~g  236 (330)
T 3hxj_A          162 INPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGH  236 (330)
T ss_dssp             ECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTE
T ss_pred             ECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCe
Confidence            9988 554433321         223454 44555  8899999 777777777666566777777654 7777888888


Q ss_pred             EEEEECCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018        478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP  556 (635)
Q Consensus       478 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  556 (635)
                      +..+|. +++.+..+..   ....+..+..+ +..|..++.+|.|..+|. +++.......           ....+.++
T Consensus       237 l~~~~~-~g~~~~~~~~---~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~-----------~~~~~~~~  300 (330)
T 3hxj_A          237 LYAINP-DGTEKWRFKT---GKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFET-----------GSWIIATP  300 (330)
T ss_dssp             EEEECT-TSCEEEEEEC---SSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEEC-----------SSCCCSCC
T ss_pred             EEEECC-CCCEeEEeeC---CCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEc-----------CCccccce
Confidence            999984 5666665554   22222334444 667888888888999995 6665544332           13456677


Q ss_pred             cccCCCeEEEEecCCCeEEEEeCCC
Q psy18018        557 HLQFNSRFVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       557 ~~s~~~~~l~~~~~d~~v~iwd~~~  581 (635)
                      ...+++++.+ ++.+|.+++...+.
T Consensus       301 ~~d~~g~l~~-gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          301 VIDENGTIYF-GTRNGKFYALFNLE  324 (330)
T ss_dssp             EECTTCCEEE-ECTTSCEEEEEC--
T ss_pred             EEcCCCEEEE-EcCCCeEEEEeccc
Confidence            7777887554 88899999887654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=6e-07  Score=95.32  Aligned_cols=464  Identities=9%  Similarity=0.007  Sum_probs=257.1

Q ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEECCCCcEE-----------------------------EEEeeCCCcEEEEeCCCC
Q psy18018         84 ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL-----------------------------LVSGSRDATLRVWHIESG  132 (635)
Q Consensus        84 i~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l-----------------------------l~~~~~dg~i~vwd~~~~  132 (635)
                      |.++..+  |+.|-.++.++-+..||..+++..                             +..++.++-+..+|.+++
T Consensus        68 I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~  147 (781)
T 3v9f_A           68 LNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATG  147 (781)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTT
T ss_pred             cceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCC
Confidence            4888887  442666777745778876643321                             222332445677777666


Q ss_pred             eEEEEee-----CCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccc-------cceeEEeeeccCCCEEEEE
Q psy18018        133 ECLHVLV-----GHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQ-------ETEVELSHGYALRSRIVSG  199 (635)
Q Consensus       133 ~~~~~l~-----~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~  199 (635)
                      +......     -....|.++.. ....|..++.++-+..||..+++...-...       ....+..+.....+.|.++
T Consensus       148 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig  227 (781)
T 3v9f_A          148 KFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG  227 (781)
T ss_dssp             EEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE
T ss_pred             eEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE
Confidence            5433211     12345788877 366777777776688899887653321110       1122333444456677777


Q ss_pred             eCCCcEEEEECCCCeEEEEEe-------CCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceee
Q psy18018        200 SDDNTLKVWSATTGKCLRTLI-------GHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH  271 (635)
Q Consensus       200 ~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~  271 (635)
                      +.+ -+..||..+++......       .....|.++..+ ...+..|+..+-|..++..+........      .....
T Consensus       228 t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~------~~f~~  300 (781)
T 3v9f_A          228 TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQ------IRFEF  300 (781)
T ss_dssp             ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------------CEE
T ss_pred             eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeec------ccccc
Confidence            776 68899987765543221       124568888875 5567777775667778765532210000      00000


Q ss_pred             eeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe
Q psy18018        272 MMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF  351 (635)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  351 (635)
                                               +. .                                ..............+....
T Consensus       301 -------------------------~~-~--------------------------------~~~~~~l~~~~v~~i~~D~  322 (781)
T 3v9f_A          301 -------------------------IR-E--------------------------------GDNNYSLSNASARYIFQDS  322 (781)
T ss_dssp             -------------------------EC-B--------------------------------CSSTTSBSSSCEEEEEECS
T ss_pred             -------------------------cc-C--------------------------------CCCCCCCCCCeEEEEEEeC
Confidence                                     00 0                                0000000111122222333


Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeee---------CCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCccee----
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLM---------GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKL----  417 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---------~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----  417 (635)
                      +|. |.+|+.++-|..++..+........         .....|.++..+ ...|..|+.++.|..++..++....    
T Consensus       323 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  401 (781)
T 3v9f_A          323 FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKEN  401 (781)
T ss_dssp             SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC---
T ss_pred             CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCC
Confidence            444 6667767778888877554332111         123468888887 4577788877778888876432211    


Q ss_pred             -------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec--cCCccEEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q psy18018        418 -------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       418 -------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~  487 (635)
                             ...+.......|..|+.++-+..++..+++......  .....|.++..+ ...+..|+. +-+..+|..+++
T Consensus       402 ~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          402 RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             --CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS
T ss_pred             CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe
Confidence                   112222223456667777778899987765433221  134578888876 346666666 558999988765


Q ss_pred             eeEEecCC--CcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018        488 CLQTLSGR--NKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       488 ~~~~~~~~--~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                      ........  ......|.++..+ ...|..|+.++-+..||..+++... +...   ..    .....|.++...++|++
T Consensus       481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~---~~----l~~~~i~~i~~d~~g~l  552 (781)
T 3v9f_A          481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQY---EG----FCSNTINQIYRSSKGQM  552 (781)
T ss_dssp             CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTT---TT----CSCSCEEEEEECTTSCE
T ss_pred             EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCC---CC----CCCCeeEEEEECCCCCE
Confidence            43332211  1124568888884 3345556654448888887664332 2110   00    02446888888889987


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      .+... +|.+..||..+++.. .+.. ...-....|.++...++|.+.++ +.+|     |..+|++
T Consensus       553 Wi~T~-~Glv~~~d~~~~~~~-~~~~-~~gl~~~~i~~i~~d~~g~lW~~-t~~G-----l~~~~~~  610 (781)
T 3v9f_A          553 WLATG-EGLVCFPSARNFDYQ-VFQR-KEGLPNTHIRAISEDKNGNIWAS-TNTG-----ISCYITS  610 (781)
T ss_dssp             EEEET-TEEEEESCTTTCCCE-EECG-GGTCSCCCCCEEEECSSSCEEEE-CSSC-----EEEEETT
T ss_pred             EEEEC-CCceEEECCCCCcEE-Eccc-cCCCCCceEEEEEECCCCCEEEE-cCCc-----eEEEECC
Confidence            66544 776588998877632 3321 11223456889999999986665 4566     4555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.38  E-value=5.2e-10  Score=106.59  Aligned_cols=230  Identities=16%  Similarity=0.097  Sum_probs=151.4

Q ss_pred             EEEEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCC-------CcceeEEEEe--CCEEEEEeC--CCcE
Q psy18018        347 FGFQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGH-------QSLTSGMELR--NNILVSGNA--DSTV  405 (635)
Q Consensus       347 ~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~-------~~~v~~l~~~--~~~l~s~~~--dg~i  405 (635)
                      ++++||+++++++.          .++.|.++|..+++.+..+.-.       ......+.++  +++++++..  ++.|
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V  202 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV  202 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE
Confidence            34777777776665          3578999999998888776432       1223455665  677777763  5789


Q ss_pred             EEEEccCCcceeEEEE-----EeeC-CcEEEEEeCCCcEEEEeCCCCceeee----eccCCccE---EEEEecCCEEEEE
Q psy18018        406 KVWDIVSGTKKLMFRI-----CLFD-GVHVVSGSLDTSIRVWEAESGNLRHT----LMGHQSLT---SGMELRNNILVSG  472 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~~-----~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~v---~~~~~~~~~l~s~  472 (635)
                      .+.|+.+.+....+..     ..|+ ...+++.+.||.+.+.+..+++....    +.....++   ..+..+++.++..
T Consensus       203 sVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~  282 (426)
T 3c75_H          203 GVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP  282 (426)
T ss_dssp             EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred             EEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE
Confidence            9999999877665543     2333 35667778899998888866665532    11111111   1234456666666


Q ss_pred             eCCCcEEEEECCCCcee--EEecCC---------CcccccEEEEEecCCEEEEEeC----------CCcEEEEECCCCce
Q psy18018        473 NADSTVKVWDIVSGQCL--QTLSGR---------NKHQSAVTCLQFNSRFVITSSD----------DGTVKLWDVKTGEF  531 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~  531 (635)
                      +..+.+.+.|.......  ..+...         .........+..+++.+++...          ++.|.+.|..+.+.
T Consensus       283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv  362 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER  362 (426)
T ss_dssp             BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence            77889999998654321  111100         0011111245556676666532          35799999999998


Q ss_pred             eeeeccceecCceeEEeccCceecccccCCCe-EEEEec-CCCeEEEEeCCCCceEEee
Q psy18018        532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~  588 (635)
                      +..+..            ......++|+||++ +++++. .++.|.|+|+.+++.++++
T Consensus       363 v~~I~v------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          363 INKIEL------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEE------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEC------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            887754            22467889999999 888877 5899999999999999887

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=1e-06  Score=93.47  Aligned_cols=449  Identities=11%  Similarity=0.035  Sum_probs=245.0

Q ss_pred             EEEEEcC---CEEEEeeCCCcEEEEECCCCcE---------------E----------EEEeeCCCcEEEEeCCCCeEEE
Q psy18018         85 TCLQFSG---SRIVSGSDDNTLKVWSATTGKC---------------L----------LVSGSRDATLRVWHIESGECLH  136 (635)
Q Consensus        85 ~~~~~s~---~~l~s~~~d~~v~vWd~~~~~~---------------l----------l~~~~~dg~i~vwd~~~~~~~~  136 (635)
                      .++....   ..|-.++.++-|..+|.++++.               +          +..|+.++-+..+|..+++...
T Consensus       118 ~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~  197 (781)
T 3v9f_A          118 THITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKH  197 (781)
T ss_dssp             EEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             eEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEe
Confidence            6776642   4555565444566677543321               0          4445556568888887765433


Q ss_pred             EeeC-------CCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccc-------cceeEEeeeccCCCEEEEEeC
Q psy18018        137 VLVG-------HLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQ-------ETEVELSHGYALRSRIVSGSD  201 (635)
Q Consensus       137 ~l~~-------h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~  201 (635)
                      ....       ....|.++.. ....|..++.+ -+.+||..+++.......       ....+.......++.|.+|+.
T Consensus       198 ~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~  276 (781)
T 3v9f_A          198 FVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE  276 (781)
T ss_dssp             ECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES
T ss_pred             eecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC
Confidence            2111       1356888887 33345555555 588899877654322111       122344444456778888888


Q ss_pred             CCcEEEEECCCCeEEEEEe--------------CCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCc
Q psy18018        202 DNTLKVWSATTGKCLRTLI--------------GHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEP  266 (635)
Q Consensus       202 dg~i~vwd~~~~~~~~~~~--------------~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~  266 (635)
                      .+-|.++|..+++......              .....|.++..+ ...|..|+.++-|..++............     
T Consensus       277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-----  351 (781)
T 3v9f_A          277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYS-----  351 (781)
T ss_dssp             SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC-------
T ss_pred             CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccC-----
Confidence            6778899987765432111              134568888886 44677777777788887654321100000     


Q ss_pred             cceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCce
Q psy18018        267 TQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDL  346 (635)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (635)
                                                        +.                                ...........+
T Consensus       352 ----------------------------------~~--------------------------------~~~~~~l~~~~v  365 (781)
T 3v9f_A          352 ----------------------------------PT--------------------------------QMNESSLSNKVV  365 (781)
T ss_dssp             --------------------------------------------------------------------CCCSSCCSSSCE
T ss_pred             ----------------------------------cc--------------------------------ccccCCCCCcce
Confidence                                              00                                000000011123


Q ss_pred             EEEEecC-cEEEEecCCCeEEEEEccCCceEEee---eCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcce-----
Q psy18018        347 FGFQFDG-VHVVSGSLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKK-----  416 (635)
Q Consensus       347 ~~~s~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~---~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~-----  416 (635)
                      .++..+. ..|..|+.++-|..|+..++......   ......|.++..+ ...|..++.++.+..++..+++..     
T Consensus       366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  445 (781)
T 3v9f_A          366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE  445 (781)
T ss_dssp             EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred             EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence            3333332 34667776666888987654332211   1234578888886 556777887777888887654321     


Q ss_pred             -----eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-----CccEEEEEecC-CEEEEEeCCCcEEEEECCC
Q psy18018        417 -----LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-----QSLTSGMELRN-NILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       417 -----~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~  485 (635)
                           ....+.......|..|+. +-+..+|..+++........     ...|.++..+. ..+..|+.++-+..||..+
T Consensus       446 ~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          446 KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred             CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence                 112222222345666666 55888998876654332222     35688887753 3555666644588899876


Q ss_pred             CceeEEecCC-CcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        486 GQCLQTLSGR-NKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       486 ~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      ++.. .+... ......|.++..+ ...|..++.+|-+..||..+++... +....  .     .....|.++...++|+
T Consensus       525 ~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~--g-----l~~~~i~~i~~d~~g~  595 (781)
T 3v9f_A          525 QLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKE--G-----LPNTHIRAISEDKNGN  595 (781)
T ss_dssp             CEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGG--T-----CSCCCCCEEEECSSSC
T ss_pred             CeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccC--C-----CCCceEEEEEECCCCC
Confidence            5433 33221 1124568888884 3345555556754888887765322 21100  0     0123567788888888


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCc-eEEEEEeCCCCeEEEEccCCC
Q psy18018        564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGG-VVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~d~~~l~~~~~dg  619 (635)
                      +.++ +.+| |..+|.++++. ..+...+.-.... ...++...++|++++ |+.+|
T Consensus       596 lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G  648 (781)
T 3v9f_A          596 IWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING  648 (781)
T ss_dssp             EEEE-CSSC-EEEEETTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred             EEEE-cCCc-eEEEECCCCce-EEecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence            7665 4455 77888876553 3443221111111 235677788888655 66677

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.34  E-value=2.5e-08  Score=92.51  Aligned_cols=188  Identities=10%  Similarity=0.007  Sum_probs=106.0

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEe-eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                      +++.+++..+++...++.|..|+. +++.... ...+...+..++++                               ++
T Consensus       104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-------------------------------~~  151 (299)
T 2z2n_A          104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-------------------------------SD  151 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-------------------------------TT
T ss_pred             eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-------------------------------CC
Confidence            345566666666656677777776 4443321 11222334444443                               23


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        426 GVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       426 ~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                      +...++...++.|..||. +++.... +..+...+.++.++  +++.++...++.|..||. +++... +... .....+
T Consensus       152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~  227 (299)
T 2z2n_A          152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP-TPNARP  227 (299)
T ss_dssp             SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCE
T ss_pred             CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-CCCCCc
Confidence            333333333455666666 4443322 22233456677774  556666666889999998 665433 3221 134567


Q ss_pred             EEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        503 TCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       503 ~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      .++++  +++++++...++.|..||. +++. ..+...         .....+.++++ +++++.++.. .+.+..++.+
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~---------~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ---------IKSAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS---------SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             eeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC---------CCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            78888  4666666557789999998 4432 222110         12346788888 8888877665 5667778877


Q ss_pred             CCc
Q psy18018        581 TGE  583 (635)
Q Consensus       581 ~~~  583 (635)
                      +++
T Consensus       295 ~~~  297 (299)
T 2z2n_A          295 KDN  297 (299)
T ss_dssp             ---
T ss_pred             ccc
Confidence            654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.34  E-value=9.6e-09  Score=95.40  Aligned_cols=262  Identities=11%  Similarity=0.018  Sum_probs=170.3

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE-eeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee-
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL-  417 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~-~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-  417 (635)
                      ..+..+++.++|+..++...++.|..|+.. ++... .+..+...+.+++++  +.+.++...++.|..+|.. ++... 
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~   97 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY   97 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence            344567778889888877778999999987 55443 222334578888886  4455555557889888876 33211 


Q ss_pred             ---------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee-eeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCC
Q psy18018        418 ---------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       418 ---------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~  485 (635)
                               ....+.++++.+++...++.|..++.. ++... .+......+.++.++  +++.++...++.|..+|. +
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence                     112245677777766668889999987 55542 233334567777774  566666666788999998 5


Q ss_pred             CceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018        486 GQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR  563 (635)
Q Consensus       486 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  563 (635)
                      ++... +... .....+..++++  ++++++....+.|.+|+. +++.......          .....+.+++++++|+
T Consensus       176 g~~~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~----------~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          176 GKLEE-YPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP----------TPNARPHAITAGKNSE  242 (300)
T ss_dssp             CCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS----------STTCCEEEEEECSTTC
T ss_pred             CcEEE-eeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC----------CCCCCceEEEECCCCC
Confidence            55443 3211 133457778884  666666666778999998 4543322111          1234578899999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       564 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +.++...++.|..||. +++.. .+..   ......+.+++++++|++.++.. + .    |+.+|++
T Consensus       243 l~v~~~~~~~i~~~~~-~g~~~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~-~-~----i~~~~p~  299 (300)
T 2qc5_A          243 IWFTEWGANQIGRITN-DNTIQ-EYQL---QTENAEPHGITFGKDGSVWFALK-C-K----IGKLNLN  299 (300)
T ss_dssp             EEEEETTTTEEEEECT-TSCEE-EEEC---CSTTCCCCCEEECTTSCEEEECS-S-E----EEEEEEC
T ss_pred             EEEeccCCCeEEEECC-CCcEE-EEEC---CccCCccceeEeCCCCCEEEEcc-C-c----eEEeCCC
Confidence            8877777789999998 45543 2211   22345678999999999777665 4 4    7777764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=8.4e-10  Score=103.41  Aligned_cols=239  Identities=9%  Similarity=0.088  Sum_probs=139.6

Q ss_pred             CCceEEEEecCcEEEE-------ecCCCeEEEEEccCCceEEeee----CCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018        343 VPDLFGFQFDGVHVVS-------GSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMELRNNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~-------~~~dg~i~v~~~~~~~~~~~~~----~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~  411 (635)
                      .+..+++++++..+++       +..++.|..|+..+++......    ++...+.+++++                   
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~-------------------   79 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-------------------   79 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-------------------
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-------------------
Confidence            3456778888887777       6778899999987776543221    122344444443                   


Q ss_pred             CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee-ecc----CCccEEEEEec--CCEEEEEeCC---------
Q psy18018        412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMG----HQSLTSGMELR--NNILVSGNAD---------  475 (635)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~----~~~~v~~~~~~--~~~l~s~~~d---------  475 (635)
                                  +++..+..++..+.|.+||.. ++.... ...    ....+.++.++  ++++++...+         
T Consensus        80 ------------~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           80 ------------RDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             ------------SSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             ------------cCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence                        331122223333356666665 443322 111    11235566664  5566665544         


Q ss_pred             ------CcEEEEECCCCceeEEecCCCcccccEEEEEec------CCEEEEE-eCCCcEEEEECC-CCceeeeeccceec
Q psy18018        476 ------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN------SRFVITS-SDDGTVKLWDVK-TGEFSTPLMSSFIL  541 (635)
Q Consensus       476 ------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~-~~d~~i~vwd~~-~~~~~~~~~~~~~~  541 (635)
                            +.|..|+.. ++......    +......++++      ++.++.+ ..++.|.+||.. +++........ ..
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~----~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~  220 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDT----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HI  220 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEE----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-EC
T ss_pred             cccCCCCeEEEECCC-CCEEEecc----CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-EC
Confidence                  567777765 54433222    22233445544      5455444 567899999986 34321110000 00


Q ss_pred             CceeEEecc-CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc-cCCC
Q psy18018        542 NPFYFLIYS-QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG-SRNG  619 (635)
Q Consensus       542 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~-~~dg  619 (635)
                           ..+. .....++++++|+++++...++.|.+||..+++.+..+.     .+...+.+++|+|||+.|.++ ..++
T Consensus       221 -----~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-----~~~~~~~~i~~~~dg~~l~v~~~~~~  290 (314)
T 1pjx_A          221 -----PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-----CPFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             -----CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-----CSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             -----CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-----CCCCCceeEEECCCCCEEEEEeCCCC
Confidence                 0011 346778999999998888788899999998787666552     344678999999999955544 4455


Q ss_pred             eeEeEEEEEeeecC
Q psy18018        620 TEETKLLVLDFDVD  633 (635)
Q Consensus       620 ~~~~~l~~~d~~~~  633 (635)
                      .    |+.+|++.+
T Consensus       291 ~----l~~~~~~~~  300 (314)
T 1pjx_A          291 A----VWKFEWQRN  300 (314)
T ss_dssp             E----EEEEECSSC
T ss_pred             e----EEEEeCCCC
Confidence            5    788887654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.32  E-value=5.9e-10  Score=103.34  Aligned_cols=212  Identities=13%  Similarity=0.057  Sum_probs=141.2

Q ss_pred             CCCCCccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--
Q psy18018         14 PIKDPKVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--   90 (635)
Q Consensus        14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--   90 (635)
                      +..+...+..+.... .+++|+    |+|+ +++++...+        .+..||..++  ...+..+...+ .+++++  
T Consensus        16 ~~~~~~~l~~~~~~~-eg~~~d----~~g~~l~~~~~~~~--------~i~~~~~~~~--~~~~~~~~~~~-~~l~~~~d   79 (296)
T 3e5z_A           16 AGAEARRLADGFTWT-EGPVYV----PARSAVIFSDVRQN--------RTWAWSDDGQ--LSPEMHPSHHQ-NGHCLNKQ   79 (296)
T ss_dssp             TTCCCEEEECCCSSE-EEEEEE----GGGTEEEEEEGGGT--------EEEEEETTSC--EEEEESSCSSE-EEEEECTT
T ss_pred             CCCcEEEEecCCccc-cCCeEe----CCCCEEEEEeCCCC--------EEEEEECCCC--eEEEECCCCCc-ceeeECCC
Confidence            344456777777777 899999    8998 666655433        3445998876  66777777766 899998  


Q ss_pred             CCEEEEeeCCCcEEEEECCCCcEE-------------------------EEE----ee-------------CCCcEEEEe
Q psy18018         91 GSRIVSGSDDNTLKVWSATTGKCL-------------------------LVS----GS-------------RDATLRVWH  128 (635)
Q Consensus        91 ~~~l~s~~~d~~v~vWd~~~~~~l-------------------------l~~----~~-------------~dg~i~vwd  128 (635)
                      |+++++...++.|.+||..+|+..                         +++    |+             ..+.|..++
T Consensus        80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence            888777777899999999777643                         222    11             022344444


Q ss_pred             CCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC-Cccc---eeeccccceeEEeeeccCCCEEEEEeCC
Q psy18018        129 IESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD-TEEC---LHAELQETEVELSHGYALRSRIVSGSDD  202 (635)
Q Consensus       129 ~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d  202 (635)
                      .. ++ ...+..+......++|  +++.|++.+.++.|.+|++. +++.   ...+.........+.+.+++.++++. +
T Consensus       160 ~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~  236 (296)
T 3e5z_A          160 PD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-G  236 (296)
T ss_dssp             TT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-T
T ss_pred             CC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-C
Confidence            33 33 3344456667788999  78888888888999999987 4443   11121111112233344445566666 8


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEE
Q psy18018        203 NTLKVWSATTGKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLK  246 (635)
Q Consensus       203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~  246 (635)
                      +.|.+||.. ++.+..+..+.. +.+++|.   ++.|++++.++..+
T Consensus       237 ~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          237 DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            899999986 888888887777 8888883   45788888775433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.31  E-value=2.6e-10  Score=107.75  Aligned_cols=274  Identities=11%  Similarity=0.055  Sum_probs=168.2

Q ss_pred             CCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE
Q psy18018        121 DATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG  199 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (635)
                      ++.|..|| .+++.......+...+.++.. .+..|..++.+  +..+|. +++.+................ ++.++++
T Consensus        39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~  113 (330)
T 3hxj_A           39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVT  113 (330)
T ss_dssp             TTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEE
T ss_pred             CCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEE
Confidence            33444444 444444433334445566666 35667776665  888886 666555444333222112222 7889999


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecc
Q psy18018        200 SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEP  278 (635)
Q Consensus       200 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (635)
                      +.++.+..+|.. ++.......+...+.++..+ ...++.++.++.+..+|.. +.......                  
T Consensus       114 t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~------------------  173 (330)
T 3hxj_A          114 SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK------------------  173 (330)
T ss_dssp             CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE------------------
T ss_pred             ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe------------------
Confidence            999999999988 88777776665556666665 5667778888999999876 32111000                  


Q ss_pred             ccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE
Q psy18018        279 QFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS  358 (635)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  358 (635)
                                                                                  ........+.+.+++. +.+
T Consensus       174 ------------------------------------------------------------~~~~~~~~~~~d~~g~-l~v  192 (330)
T 3hxj_A          174 ------------------------------------------------------------TNDAITSAASIGKDGT-IYF  192 (330)
T ss_dssp             ------------------------------------------------------------CSSCCCSCCEECTTCC-EEE
T ss_pred             ------------------------------------------------------------cCCCceeeeEEcCCCE-EEE
Confidence                                                                        0000111122334555 444


Q ss_pred             ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEE--------EeeCCcEE
Q psy18018        359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRI--------CLFDGVHV  429 (635)
Q Consensus       359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~l  429 (635)
                      ++  +.+..+| .+++...........+.++..+++ .+..++.++.+..++.. ++.......        ....+..|
T Consensus       193 ~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~~~~~~~~~~~~~~~~~~~~~g~l  268 (330)
T 3hxj_A          193 GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GTEKWRFKTGKRIESSPVIGNTDTI  268 (330)
T ss_dssp             ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE
T ss_pred             Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CCEeEEeeCCCCccccceEcCCCeE
Confidence            55  7789999 777777777666667778888744 77888888888888643 332222211        11225567


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018        430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVS  485 (635)
Q Consensus       430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~  485 (635)
                      ..++.++.+..+|. +++....+......+.++.. .+..+..++.+|.+++...+.
T Consensus       269 ~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          269 YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred             EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence            78888889999996 67777666655555666666 455677899999999887654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.28  E-value=1.4e-09  Score=99.25  Aligned_cols=195  Identities=11%  Similarity=0.052  Sum_probs=119.6

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      +..++++++++.+++.. ++.|.+|+................+.+++++                               
T Consensus        69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~-------------------------------  116 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVD-------------------------------  116 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEEC-------------------------------
T ss_pred             cceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEEC-------------------------------
Confidence            34567888888666655 8899999987554332211222344555554                               


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      ++++.+++...++.|.+|+..+...............++.+  +++++++...++.|.+||............   ....
T Consensus       117 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~  193 (270)
T 1rwi_B          117 TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---DITA  193 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---SCCS
T ss_pred             CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---CCCC
Confidence            33333333334455666654433322211222223445555  466777777788999999887654433222   2356


Q ss_pred             EEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        502 VTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       502 v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      +..++++  +.++++...++.|.+|+........ ...          .+...+.+++++|+|+++++...++.|+++++
T Consensus       194 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----------CSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----------CCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            7788884  6666666678899999987654322 110          11245788999999999999899999999998


Q ss_pred             CCCce
Q psy18018        580 KTGEF  584 (635)
Q Consensus       580 ~~~~~  584 (635)
                      ...+.
T Consensus       263 ~~~~~  267 (270)
T 1rwi_B          263 LEHHH  267 (270)
T ss_dssp             CGGGS
T ss_pred             CCccc
Confidence            76653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.28  E-value=2.9e-09  Score=100.61  Aligned_cols=184  Identities=10%  Similarity=-0.004  Sum_probs=115.3

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      .+++|+    |++..+++...++.+.        .|   .++....+.++...+ .+++|+  |++++++..++.|.+||
T Consensus         9 ~~~~~~----~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~~~~~~~i~~~d   72 (333)
T 2dg1_A            9 PTLFYS----GKSNSAVPIISESELQ--------TI---TAEPWLEISKKGLQL-EGLNFDRQGQLFLLDVFEGNIFKIN   72 (333)
T ss_dssp             CBCCSC----GGGGCSSCCCCGGGSC--------EE---ECEEEEEEESSCCCE-EEEEECTTSCEEEEETTTCEEEEEC
T ss_pred             ceeeec----CCccceeEEeecccCc--------cc---ccceeEEEeccCccc-cCcEECCCCCEEEEECCCCEEEEEe
Confidence            788999    8888887775544333        36   334556677777767 899998  77666777777777777


Q ss_pred             CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC----CeEEEEeCCCccceeecc--
Q psy18018        108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD----YMVKIWNPDTEECLHAEL--  179 (635)
Q Consensus       108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~--  179 (635)
                      ..+++                     .......+...+.++++  +++++++...+    +.|.+||.++++......  
T Consensus        73 ~~~~~---------------------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  131 (333)
T 2dg1_A           73 PETKE---------------------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL  131 (333)
T ss_dssp             TTTCC---------------------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS
T ss_pred             CCCCc---------------------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC
Confidence            66443                     22222245677999999  67777777666    689999998876542221  


Q ss_pred             ccceeEEeeeccCCCEEEEEeC-------CCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEE-EEeeCceeEEEec
Q psy18018        180 QETEVELSHGYALRSRIVSGSD-------DNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNII-ISGSTDRTLKGWS  249 (635)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~~w~  249 (635)
                      ..........+.+++.++.++.       .+.|..+|..+++... +..+...+..++++  ++.+ ++.+.++.|.+|+
T Consensus       132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIA  210 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence            1122233333333444555544       2556666665554433 32334457788885  5555 4555678999998


Q ss_pred             cc
Q psy18018        250 NA  251 (635)
Q Consensus       250 ~~  251 (635)
                      ..
T Consensus       211 ~~  212 (333)
T 2dg1_A          211 LE  212 (333)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.27  E-value=4.6e-09  Score=110.70  Aligned_cols=265  Identities=12%  Similarity=0.035  Sum_probs=160.6

Q ss_pred             EEecCcEEEEecCCCe---EEEEEc--c---CCceEEee------eCCCcceeEEEEe--CCEEEEEeCC-C----cEEE
Q psy18018        349 FQFDGVHVVSGSLDTS---IRVWEA--E---SGNLRHTL------MGHQSLTSGMELR--NNILVSGNAD-S----TVKV  407 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~---i~v~~~--~---~~~~~~~~------~~~~~~v~~l~~~--~~~l~s~~~d-g----~i~i  407 (635)
                      .+|+|++++....++.   -.+|..  .   .++....+      .+|...+..++|+  ++.|+.+..+ |    .|++
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            4589998876554332   444543  3   33332221      2233367778887  5666665443 3    5999


Q ss_pred             EEccCCcceeEE--------EEEeeCCcEEEEEeCCCc--------------EEEEeCCCCce----eeeeccCCccEEE
Q psy18018        408 WDIVSGTKKLMF--------RICLFDGVHVVSGSLDTS--------------IRVWEAESGNL----RHTLMGHQSLTSG  461 (635)
Q Consensus       408 wd~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~--------------i~~~d~~~~~~----~~~~~~~~~~v~~  461 (635)
                      ||+.+++.....        ..++|| +.|+.+..++.              |++|++.++..    +.....+...+..
T Consensus       194 ~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          194 VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            999988754321        137789 99988876654              88999987652    2222233334566


Q ss_pred             EEe--cCCEEEEEeCCC-----cEEEEECCCC--ceeEEecCCCcccccEEEEEecCCEEEEEeCC----CcEEEEECCC
Q psy18018        462 MEL--RNNILVSGNADS-----TVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD----GTVKLWDVKT  528 (635)
Q Consensus       462 ~~~--~~~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----~~i~vwd~~~  528 (635)
                      +.+  ++++++..+.++     .|++||+.++  +....+...  .......+..+++.|+..+.+    +.|.+||+.+
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--SSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            655  567777766543     7999999876  313444431  222233344578888877754    4599999987


Q ss_pred             Cc-eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC-CCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        529 GE-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK-TGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       529 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      +. ....+..+          +...+..++++ ++.++++...|+..+||.+. +++.+..+.    .+..+.+..+.++
T Consensus       351 ~~~~~~~l~~~----------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~----~~~~~~v~~~~~s  415 (741)
T 1yr2_A          351 STPRFDTVVPE----------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS----LPGIGSASGLSGR  415 (741)
T ss_dssp             SSCEEEEEECC----------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB----CSSSCEEEEEECC
T ss_pred             CccccEEEecC----------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc----CCCCeEEEEeecC
Confidence            52 22222211          22335566676 67888889999987777654 466555552    1235678999999


Q ss_pred             CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        607 ETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ||+..|+....+..-.-.+|.+|++
T Consensus       416 ~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          416 PGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             BTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCCEEEEEEcCCCCCCEEEEEECC
Confidence            9998666443333333458888764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.26  E-value=6.7e-10  Score=117.08  Aligned_cols=226  Identities=13%  Similarity=0.044  Sum_probs=147.6

Q ss_pred             ceEEEEecCcEEEEecCC-----CeEEEEEccCCceEEeeeCCCcceeEEEEeC-CEEEEEeCCCc--------------
Q psy18018        345 DLFGFQFDGVHVVSGSLD-----TSIRVWEAESGNLRHTLMGHQSLTSGMELRN-NILVSGNADST--------------  404 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~~~dg~--------------  404 (635)
                      ...+|||||++|+.+..+     ..|++||+.+++.+... .+...+..++|++ +.|+.+..++.              
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence            346799999999876543     46999999999876431 1222235677764 56776665543              


Q ss_pred             EEEEEccCCcce-------------eEEEEEeeCCcEEEEEeCCC-----cEEEEeCCCC--ceeeeeccCCc-cEEEEE
Q psy18018        405 VKVWDIVSGTKK-------------LMFRICLFDGVHVVSGSLDT-----SIRVWEAESG--NLRHTLMGHQS-LTSGME  463 (635)
Q Consensus       405 i~iwd~~~~~~~-------------~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~-~v~~~~  463 (635)
                      |.+|++.++...             .....++|||++|+....++     .|++||+.++  +....+..+.. ....+.
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~  324 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD  324 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe
Confidence            888998665421             12334789999998887544     8999999877  41344544443 333445


Q ss_pred             ecCCEEEEEeCC----CcEEEEECCCC--ceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECC-CCceeeee
Q psy18018        464 LRNNILVSGNAD----STVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVK-TGEFSTPL  535 (635)
Q Consensus       464 ~~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~-~~~~~~~~  535 (635)
                      .+++.|+..+.+    +.|.+||+.++  +....+..   +...+..+++ ++.++++...|+..+||.+. +++....+
T Consensus       325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---SKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---CSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC---CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence            678877777653    45999999875  23333332   3445666777 56677888889987777654 34433333


Q ss_pred             ccceecCceeEEeccCceecccccCCCeEEEEe----cCCCeEEEEeCCCCce
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS----SDDGTVKLWDVKTGEF  584 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~v~iwd~~~~~~  584 (635)
                      ..          .....+..++++||++.|+..    ...++|++||+.+++.
T Consensus       402 ~~----------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          402 SL----------PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             BC----------SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             cC----------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            21          124467788899998866632    3447899999998873

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=117.47  Aligned_cols=203  Identities=17%  Similarity=0.109  Sum_probs=114.0

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS  431 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~  431 (635)
                      ++..+++++.||.|+.||..+|+.+..+..  ..+.+..+                               ..++..+++
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~-------------------------------~~~g~~~v~   54 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPT-------------------------------HVEEPAFLP   54 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------------------------------------CCEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecce-------------------------------EcCCCEEEE
Confidence            678899999999999999999998887765  22221111                               123334555


Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCc-cE-EEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQS-LT-SGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN  508 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~-~v-~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  508 (635)
                      ++.|+.++.||..+++.+..+..+.. .+ .+... .++.+++++.|+.++.||..+|+.+..+..   +. .+ ..+.+
T Consensus        55 ~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~-~~-~~~p~  129 (369)
T 2hz6_A           55 DPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF-AD-SLSPS  129 (369)
T ss_dssp             CTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------
T ss_pred             eCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-cc-ccccc
Confidence            56777777777777776655543321 11 01112 456788888999999999999998887764   22 11 22337


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC---eEEEEecCCCeEEEEeCCCCceE
Q psy18018        509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS---RFVITSSDDGTVKLWDVKTGEFI  585 (635)
Q Consensus       509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~v~iwd~~~~~~~  585 (635)
                      +..+++++.|+.|+.||.++++....+....             ....+++++.   ..+++++.||.|+.||..+|+.+
T Consensus       130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          130 TSLLYLGRTEYTITMYDTKTRELRWNATYFD-------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             ---EEEEEEEEEEECCCSSSSSCCCEEEEEE-------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             CCEEEEEecCCEEEEEECCCCCEEEeEeccc-------------ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            7889999999999999999998766543211             1223344432   45666888999999999999998


Q ss_pred             EeeeeccCCCCCceE-EEEEeCCCCeE
Q psy18018        586 RNLVSLDSGGSGGVV-WRIRASETKLV  611 (635)
Q Consensus       586 ~~~~~~~~~~~~~~i-~~l~~s~d~~~  611 (635)
                      ....      ..+++ ....+++||..
T Consensus       197 W~~~------~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          197 WIQN------YASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EEEE------CSSCEEEEEECTTSSCE
T ss_pred             EEec------CCCceEEEEEecCCceE
Confidence            8874      22333 34455666643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=1.1e-08  Score=105.38  Aligned_cols=250  Identities=14%  Similarity=0.157  Sum_probs=160.7

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCC----cce-eEEEEeCCEEEEEeC------CCcEEEEEccCCcceeEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ----SLT-SGMELRNNILVSGNA------DSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~----~~v-~~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~  420 (635)
                      .+..+++++.++.|..+|..+|+.+..+....    ..+ ......++.++.+..      +|.|..+|..+++......
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            45678888899999999999999988776531    111 111223556666543      5889999998887765543


Q ss_pred             ----------------------------------------EEeeCCcEEEEEeCCC-------------------cEEEE
Q psy18018        421 ----------------------------------------ICLFDGVHVVSGSLDT-------------------SIRVW  441 (635)
Q Consensus       421 ----------------------------------------~~~~~~~~l~~~~~d~-------------------~i~~~  441 (635)
                                                              .+.++...++.+..++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence                                                    2334567777777665                   39999


Q ss_pred             eCCCCceeeeecc--CC-------ccE--EEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCc---------c
Q psy18018        442 EAESGNLRHTLMG--HQ-------SLT--SGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNK---------H  498 (635)
Q Consensus       442 d~~~~~~~~~~~~--~~-------~~v--~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~  498 (635)
                      |..+|+.+..++.  |.       .+.  ..+..+++   .++.++.+|.++++|..+++.+........         .
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999887764  22       222  23445665   689999999999999999998854432100         0


Q ss_pred             cccE------------------------EEEEe--cCCEEEE------------------------------------Ee
Q psy18018        499 QSAV------------------------TCLQF--NSRFVIT------------------------------------SS  516 (635)
Q Consensus       499 ~~~v------------------------~~~~~--~~~~l~~------------------------------------~~  516 (635)
                      ..++                        ..+++  +..+++.                                    ..
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence            0000                        00222  2233322                                    11


Q ss_pred             CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCC
Q psy18018        517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS  596 (635)
Q Consensus       517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  596 (635)
                      .+|.|..||+.+++.+......            .+.....+...+.++++++.|+.++.||.++|+.+..+..- ....
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~-~~~~  502 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYP------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ-SGIV  502 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCC
T ss_pred             ccceEEEEeCCCCcEEEEccCC------------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC-CCcc
Confidence            3478999999999877655431            22333344557888888999999999999999999888531 1122


Q ss_pred             CceEEEEEeCCCCe-EEEEccC
Q psy18018        597 GGVVWRIRASETKL-VCAVGSR  617 (635)
Q Consensus       597 ~~~i~~l~~s~d~~-~l~~~~~  617 (635)
                      ..++   .+..+|+ ++++++.
T Consensus       503 ~~p~---~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          503 AAPM---TFELAGRQYVAIMAG  521 (668)
T ss_dssp             SCCE---EEEETTEEEEEEEEC
T ss_pred             cCce---EEEECCEEEEEEEec
Confidence            2333   3345666 6665553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=9.1e-09  Score=106.05  Aligned_cols=81  Identities=11%  Similarity=0.263  Sum_probs=57.2

Q ss_pred             CCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCccc-ccEEEEEecCC-E
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ-SAVTCLQFNSR-F  511 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~  511 (635)
                      +|.|..||+.+++.+.+...+.... ..+...+.+++.++.|+.++.||.++++.+..+....... .+++ ...+|+ +
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~-~~~~G~~y  515 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT-FELAGRQY  515 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE-EEECCEEE
Confidence            4789999999999988776543322 3455678899999999999999999999998887632222 3333 244665 4


Q ss_pred             EEEEe
Q psy18018        512 VITSS  516 (635)
Q Consensus       512 l~~~~  516 (635)
                      ++.++
T Consensus       516 va~~~  520 (668)
T 1kv9_A          516 VAIMA  520 (668)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=4.5e-09  Score=98.50  Aligned_cols=235  Identities=9%  Similarity=-0.028  Sum_probs=131.6

Q ss_pred             EEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCCC-------cceeEEEEe--CCEEEEEeC--CCcEEE
Q psy18018        349 FQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGHQ-------SLTSGMELR--NNILVSGNA--DSTVKV  407 (635)
Q Consensus       349 ~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~-------~~v~~l~~~--~~~l~s~~~--dg~i~i  407 (635)
                      ++||+++++++.          .++.|.+||+.+++.+..+....       .....++++  +++++++..  +..+.+
T Consensus        72 ~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V  151 (368)
T 1mda_H           72 AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL  151 (368)
T ss_dssp             ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred             ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE
Confidence            555555555553          24566666666666666654320       122334443  445555542  344555


Q ss_pred             --EEccCCcceeEEEE-----EeeCC-cEEEEEeCCCcEEEEeCCC-----Cceee----eeccCCccEEEEEecCCEEE
Q psy18018        408 --WDIVSGTKKLMFRI-----CLFDG-VHVVSGSLDTSIRVWEAES-----GNLRH----TLMGHQSLTSGMELRNNILV  470 (635)
Q Consensus       408 --wd~~~~~~~~~~~~-----~~~~~-~~l~~~~~d~~i~~~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~l~  470 (635)
                        +|..+   ......     ..|++ ..+++.+.|+.+.+.++.+     ++...    .+.....+. . ..++..++
T Consensus       152 ~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~  226 (368)
T 1mda_H          152 SVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLV  226 (368)
T ss_dssp             EETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEE
T ss_pred             EEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEE
Confidence              66654   111111     12322 2344555677777777775     33321    111122233 2 44556555


Q ss_pred             EEeCCCcEEEEECCCCc--eeEEecCCC---------cccccEEEEEecCCEEEEEeC---------CCcEEEEECCCCc
Q psy18018        471 SGNADSTVKVWDIVSGQ--CLQTLSGRN---------KHQSAVTCLQFNSRFVITSSD---------DGTVKLWDVKTGE  530 (635)
Q Consensus       471 s~~~dg~i~iwd~~~~~--~~~~~~~~~---------~~~~~v~~~~~~~~~l~~~~~---------d~~i~vwd~~~~~  530 (635)
                      ..+. +.+.+.|.....  .+..+....         +.......+..+++.++.+..         ++.+.++|+.+++
T Consensus       227 ~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~  305 (368)
T 1mda_H          227 WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence            5556 899999986532  222222100         011111345557777776533         2356799999999


Q ss_pred             eeeeeccceecCceeEEeccCceecccccCCCe-EEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      .+..+...            .....++|+|||+ ++++.. .++.|.++|+.+++.+..+.      -....+.+++.+
T Consensus       306 vv~~i~vg------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~------vg~~P~~i~~~~  366 (368)
T 1mda_H          306 TSGPISNG------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE------LDKGPESLSVQN  366 (368)
T ss_dssp             EEECCEEE------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC------CCSCCCEEECCC
T ss_pred             EEEEEECC------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE------CCCCCCEEEeec
Confidence            88877542            2467899999998 555566 58999999999999999884      223344566554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=1.3e-08  Score=98.38  Aligned_cols=248  Identities=10%  Similarity=0.016  Sum_probs=143.3

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ..+..++++++++.+++...++.|+.||..++........... .. ++++                             
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~-----------------------------  179 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVT-----------------------------  179 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEEC-----------------------------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEe-----------------------------
Confidence            3455678899999888877789999999987766544433221 12 4443                             


Q ss_pred             EeeCCcEEEEEeCCC--cEEEEeCCCCceeeee----ccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEE--
Q psy18018        422 CLFDGVHVVSGSLDT--SIRVWEAESGNLRHTL----MGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQT--  491 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~----~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~--  491 (635)
                        ++++.|+++..++  .|..++...+.....+    ........++++++  ..|+.+..++.|+.||..++.....  
T Consensus       180 --~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~  257 (409)
T 3hrp_A          180 --KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ  257 (409)
T ss_dssp             --TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE
T ss_pred             --cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec
Confidence              3334444444333  4555555444332222    11233445566643  4555677788999999987653222  


Q ss_pred             --ecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccce-ecCceeEE---eccCceecccccCCC
Q psy18018        492 --LSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSF-ILNPFYFL---IYSQPLLCPHLQFNS  562 (635)
Q Consensus       492 --~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~v~~~~~s~~~  562 (635)
                        ..+. ....+...++++   +.++++-..++.|+.|+....  ...+.... ........   ..-.....++++|+|
T Consensus       258 ~~~~g~-~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          258 LELSGS-LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             CCCCSC-CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ccccCC-CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence              1110 011111266663   455666667788999987643  22221110 00000000   001246789999999


Q ss_pred             eEEEEec-CCCeEEEEeCCCCceEEeeeecc-CC---------CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        563 RFVITSS-DDGTVKLWDVKTGEFIRNLVSLD-SG---------GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       563 ~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~-~~---------~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +++++-. .++.|+.||+.+++.. .+.... ..         ..-.....++++++|.++++-..++.    |..+++
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~----Ir~i~~  408 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA----IRKYAV  408 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE----EEEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe----EEEEEe
Confidence            9888877 8899999998888754 332210 00         01245889999999988888888876    555544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.20  E-value=9.2e-08  Score=96.38  Aligned_cols=161  Identities=16%  Similarity=0.151  Sum_probs=98.4

Q ss_pred             cEEEEeCCCCceeeeeccC----------CccEE-EEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCc-----
Q psy18018        437 SIRVWEAESGNLRHTLMGH----------QSLTS-GMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNK-----  497 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~~~~~----------~~~v~-~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----  497 (635)
                      .+..+|..+|+.+..++..          ..++. ....+++   .++.++.+|.++++|..+++.+........     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            5888899999888776532          12222 2223553   577888899999999999988876643110     


Q ss_pred             -----ccccE--------------------------EEEEe--cCCEEEEEe----------------------------
Q psy18018        498 -----HQSAV--------------------------TCLQF--NSRFVITSS----------------------------  516 (635)
Q Consensus       498 -----~~~~v--------------------------~~~~~--~~~~l~~~~----------------------------  516 (635)
                           ...++                          ..+++  +..+++...                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                 00011                          01233  234444432                            


Q ss_pred             ---------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe
Q psy18018        517 ---------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN  587 (635)
Q Consensus       517 ---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~  587 (635)
                               .+|.|..||..+++.+......            ..+....+...+.+++.++.|+.|+.||.++|+.+.+
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~------------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK------------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEES------------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCC------------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence                     3578999999999877665431            2222333333556677799999999999999999998


Q ss_pred             eeeccCCCCCceEEEEEeCCCCeEEE
Q psy18018        588 LVSLDSGGSGGVVWRIRASETKLVCA  613 (635)
Q Consensus       588 ~~~~~~~~~~~~i~~l~~s~d~~~l~  613 (635)
                      +..- ......++   .+..+|+.++
T Consensus       501 ~~~~-~~~~~~p~---~~~~~G~~yv  522 (571)
T 2ad6_A          501 FKMP-SGGIGSPM---TYSFKGKQYI  522 (571)
T ss_dssp             EECS-SCCCSCCE---EEEETTEEEE
T ss_pred             EeCC-CCcEeeeE---EEEECCEEEE
Confidence            8532 11222333   3556776443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=3.7e-13  Score=128.40  Aligned_cols=248  Identities=11%  Similarity=-0.020  Sum_probs=135.9

Q ss_pred             ecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC-e-E
Q psy18018        150 YDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG-V-W  227 (635)
Q Consensus       150 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~-v-~  227 (635)
                      .++..+++++.||.|..||..+|+.+.++.. ...........+..+++++.||.|+.||..+|+.+..+..+... + .
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            3788999999999999999999998887765 33333333344557777789999999999999887776544221 1 0


Q ss_pred             EEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        228 SSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       228 ~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      +..+ .++.+++++.|+.+..||..+++....                                                
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~------------------------------------------------  117 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT------------------------------------------------  117 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC-------------------------------------------------------
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEE------------------------------------------------
Confidence            1122 466788899999999999887643210                                                


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  386 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v  386 (635)
                                          ....              ....++|++..+++++.++.|+.||..+++.+..+..+.  .
T Consensus       118 --------------------~~~~--------------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~  161 (369)
T 2hz6_A          118 --------------------LSSA--------------FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--Y  161 (369)
T ss_dssp             -------------------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--E
T ss_pred             --------------------ecCC--------------CcccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--c
Confidence                                0000              001244577888999999999999999998776654321  1


Q ss_pred             eEEEEeC-----CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCc------------EEEEeCCCCc--
Q psy18018        387 SGMELRN-----NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTS------------IRVWEAESGN--  447 (635)
Q Consensus       387 ~~l~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~------------i~~~d~~~~~--  447 (635)
                      ...++.+     +.+++++.+|.+..||..+++........+|-- .+...+.|+.            ++.+|..+|+  
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~-~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~  240 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV-AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVG  240 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE-EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHH
T ss_pred             cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE-EEEEecCCceEeccceeecccceeeeehhcCCcc
Confidence            2222332     567778888999999988887655443211100 0122223333            3344544454  


Q ss_pred             --eeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECC
Q psy18018        448 --LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV  484 (635)
Q Consensus       448 --~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~  484 (635)
                        .+..+.... .+.+....+..++.++.||.++.++..
T Consensus       241 ~~~~W~~~~~~-~~~sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          241 RITKWKYPFPK-ETEAKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HHHTSCCCCCC-HHHHHHHSEEEECBEECSSCEECCEEE
T ss_pred             cceeeeeccCc-cccccccccceEEEecccCCEEecCcc
Confidence              333332111 111111234577778888888887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.18  E-value=3.2e-07  Score=92.26  Aligned_cols=245  Identities=15%  Similarity=0.186  Sum_probs=153.3

Q ss_pred             EEEecCCCeEEEEEccCCceEEeeeCCC-----cceeEEEEeCCEEEEEe------CCCcEEEEEccCCcceeEEEE---
Q psy18018        356 VVSGSLDTSIRVWEAESGNLRHTLMGHQ-----SLTSGMELRNNILVSGN------ADSTVKVWDIVSGTKKLMFRI---  421 (635)
Q Consensus       356 l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~---  421 (635)
                      +++++.++.+..+|..+|+.+.......     .....-...++.++.++      .++.|..+|..+++.......   
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            7888889999999999999987765432     11112222355666665      378999999999887655443   


Q ss_pred             --------------------------------------------EeeCCcEEEEEeCC----------------CcEEEE
Q psy18018        422 --------------------------------------------CLFDGVHVVSGSLD----------------TSIRVW  441 (635)
Q Consensus       422 --------------------------------------------~~~~~~~l~~~~~d----------------~~i~~~  441 (635)
                                                                  +.++...++.+..+                +.|..+
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al  283 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence                                                        12345566666654                379999


Q ss_pred             eCCCCceeeeeccCC----------ccEE-EEE-ecC---CEEEEEeCCCcEEEEECCCCceeEEecCCC----------
Q psy18018        442 EAESGNLRHTLMGHQ----------SLTS-GME-LRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRN----------  496 (635)
Q Consensus       442 d~~~~~~~~~~~~~~----------~~v~-~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------  496 (635)
                      |.++|+.+..++...          .++. .+. .++   ..++.++.+|.++++|..+++.+.......          
T Consensus       284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  363 (599)
T 1w6s_A          284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL  363 (599)
T ss_dssp             ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred             eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence            999999988776422          1222 121 346   467788999999999999999887665311          


Q ss_pred             cccccE--------------------------EEEEe--cCCEEEEE---------------------------------
Q psy18018        497 KHQSAV--------------------------TCLQF--NSRFVITS---------------------------------  515 (635)
Q Consensus       497 ~~~~~v--------------------------~~~~~--~~~~l~~~---------------------------------  515 (635)
                      ....++                          ..+++  +..++++.                                 
T Consensus       364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~  443 (599)
T 1w6s_A          364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK  443 (599)
T ss_dssp             TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred             CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence            000000                          01111  11222111                                 


Q ss_pred             e------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        516 S------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       516 ~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      +      .+|.|..||+.+++.+-.....            .+...-.+...+.+++.++.|+.++.||.++|+.+.++.
T Consensus       444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~------------~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          444 GDRQNYEGLGQIKAYNAITGDYKWEKMER------------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             SBTTTTBCCEEEEEECTTTCCEEEEEEES------------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCcccCCCcCeEEEEECCCCCEEeEecCC------------CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            1      3578999999999877665421            111111223356677779999999999999999999884


Q ss_pred             eccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018        590 SLDSGGSGGVVWRIRASETKL-VCAVGS  616 (635)
Q Consensus       590 ~~~~~~~~~~i~~l~~s~d~~-~l~~~~  616 (635)
                      . .......+   +.+..||+ |+++.+
T Consensus       512 l-~~g~~~~P---~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          512 I-PSGAIGYP---MTYTHKGTQYVAIYY  535 (599)
T ss_dssp             C-SSCCCSCC---EEEEETTEEEEEEEE
T ss_pred             C-CCCcEecc---EEEEeCCEEEEEEEc
Confidence            2 22223333   44456776 555443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.16  E-value=2.1e-08  Score=88.35  Aligned_cols=184  Identities=11%  Similarity=0.041  Sum_probs=128.4

Q ss_pred             CCcEEEEeCCCCceeeeeccCC-ccEEEEEecCCEEE-EEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEE
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILV-SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFV  512 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  512 (635)
                      ++.|+++|+.+++.+..+.-.. ....++.++++.+. +.-.++.+.++|..+.+.+.++...  .... ..+++|++.+
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~~g-~glt~Dg~~l  119 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKDG-WGLATDGKIL  119 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC--SSSC-CEEEECSSSE
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC--CCCe-EEEEECCCEE
Confidence            5789999999998888765322 23346777776554 4456789999999999999988742  1122 4478888878


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc
Q psy18018        513 ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD  592 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  592 (635)
                      +++..++.|.++|..+.+....+.......+      -...+.+.|. ++++.+....++.|.+.|..+++.+..+..-.
T Consensus       120 ~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g  192 (266)
T 2iwa_A          120 YGSDGTSILYEIDPHTFKLIKKHNVKYNGHR------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPN  192 (266)
T ss_dssp             EEECSSSEEEEECTTTCCEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH
T ss_pred             EEECCCCeEEEEECCCCcEEEEEEECCCCcc------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC
Confidence            7777889999999999888777654311111      1134566777 78777777678999999999999998885310


Q ss_pred             --------CCCCCceEEEEEeCCCCeE-EEEccCCCeeEeEEEEEeeec
Q psy18018        593 --------SGGSGGVVWRIRASETKLV-CAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       593 --------~~~~~~~i~~l~~s~d~~~-l~~~~~dg~~~~~l~~~d~~~  632 (635)
                              ..........++|+|+++. ++++...+.    |+.+++.+
T Consensus       193 ~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~----v~~i~l~~  237 (266)
T 2iwa_A          193 LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK----LFEIKLHL  237 (266)
T ss_dssp             HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE----EEEEEEEE
T ss_pred             cccccccccccccCceEEEEEcCCCCEEEEECCCCCe----EEEEEEec
Confidence                    0011246789999999864 455555555    77777654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.16  E-value=5.5e-09  Score=98.76  Aligned_cols=268  Identities=10%  Similarity=0.048  Sum_probs=156.9

Q ss_pred             CCCceEEEEecCcEEEEec--CCCeEEEEEccCCceEEeee-------CCCcceeEEEEeC-CEEEEEeC------CCcE
Q psy18018        342 HVPDLFGFQFDGVHVVSGS--LDTSIRVWEAESGNLRHTLM-------GHQSLTSGMELRN-NILVSGNA------DSTV  405 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~-------~~~~~v~~l~~~~-~~l~s~~~------dg~i  405 (635)
                      ..+..++++++|+.+++..  .++.+++|.+.+++. ..+.       .+-..+.++++++ ..|.....      ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            3455678889999888853  234355555544543 2221       2445788899973 44554442      4788


Q ss_pred             EEEEccCCcceeEEE---------------EEeeCCcEEEEE-e---CCCcEEEEeCCCCceeeeeccCCccE---EEEE
Q psy18018        406 KVWDIVSGTKKLMFR---------------ICLFDGVHVVSG-S---LDTSIRVWEAESGNLRHTLMGHQSLT---SGME  463 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~---------------~~~~~~~~l~~~-~---~d~~i~~~d~~~~~~~~~~~~~~~~v---~~~~  463 (635)
                      .+||+.+++....+.               .+++++..++.+ .   .++.|.+||+.+++....+.+|....   ..+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999988776433322               234444444443 3   56788899988887776665543211   2334


Q ss_pred             ecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceee-eecccee
Q psy18018        464 LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFST-PLMSSFI  540 (635)
Q Consensus       464 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~  540 (635)
                      +++..+.+.+.++.++.|.                 ..+..+++  +++.|+.+..++. ++|.+....... .+.....
T Consensus       176 ~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~  237 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAEL  237 (343)
T ss_dssp             ETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHH
T ss_pred             ECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhh
Confidence            4565666666677665442                 12345666  6788888776663 444443211000 0000000


Q ss_pred             cCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ...+....+......++++++|+++++...++.|.+||.++++.. .+..   ........+++|.++|+++++.+..+.
T Consensus       238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~---~~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVT---DEKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEE---CGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEE---CCceecCCeeEECCCCcEEEEeCcccc
Confidence            011111223345677999999999999999999999998667643 3321   123456899999999998888765433


Q ss_pred             e------------EeEEEEEeeec
Q psy18018        621 E------------ETKLLVLDFDV  632 (635)
Q Consensus       621 ~------------~~~l~~~d~~~  632 (635)
                      +            ..+||.++++.
T Consensus       314 ~~~f~~~~~~~~~~~~i~~~~~~~  337 (343)
T 2qe8_A          314 SAPLNAGENISAPPYYIFRLKPLA  337 (343)
T ss_dssp             SGGGBTTCCCCCSCEEEEEECCSS
T ss_pred             ccccccCCCcCcCCeEEEEEECCC
Confidence            2            24666666543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.16  E-value=1.3e-08  Score=95.47  Aligned_cols=179  Identities=12%  Similarity=0.042  Sum_probs=121.1

Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCc-----------eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-----------LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~  411 (635)
                      ....+++++....+++|+.++ +.+|++.+.+           ..... .+.. |..++|++..                
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~----------------   99 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQ----------------   99 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTE----------------
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCE----------------
Confidence            567789999999999999885 6669876433           10111 2333 5555554444                


Q ss_pred             CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                                       |+++ .++.|++||+.+.........|...+.++.+.+..+++++.||.+.+||++++.... 
T Consensus       100 -----------------L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-  160 (388)
T 1xip_A          100 -----------------VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-  160 (388)
T ss_dssp             -----------------EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             -----------------EEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence                             4444 445566666555444444555666677777655558899999999999999877643 


Q ss_pred             ecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCce--eeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        492 LSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF--STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                            +...|+|++|+.+-++.|..||++++|+...++.  ...+.......  ....|...|.+++|.+++.++++
T Consensus       161 ------~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~--~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 ------LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE--ELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ------EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHH--TSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ------ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccc--cccCCCeeEEEEEEecCCeEEEE
Confidence                  3457999999766689999999999998887764  33442210000  00125678999999999999987

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.14  E-value=9.3e-07  Score=81.83  Aligned_cols=185  Identities=9%  Similarity=0.019  Sum_probs=102.3

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEe-eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                      +++.++++.+++...++.|..++.. ++.... +......+.+++++                               ++
T Consensus       109 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-------------------------------~~  156 (300)
T 2qc5_A          109 ITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-------------------------------SD  156 (300)
T ss_dssp             EEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-------------------------------TT
T ss_pred             ceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-------------------------------CC
Confidence            3455566666665556777777766 443321 22122344455443                               23


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        426 GVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       426 ~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                      ++..++...++.|..++. +++.... ...+...+.++.++  +++.++....+.|..||. +++.... ... .....+
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~-~~~~~~  232 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP-TPNARP  232 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS-STTCCE
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC-CCCCCc
Confidence            332233333445555555 3333221 11233456677764  556666666778999998 4544332 111 134557


Q ss_pred             EEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018        503 TCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       503 ~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      .+++++  ++++++...++.|..|+. +++.. .+...         .....+.+++++++|++.++.. + .|..+|.+
T Consensus       233 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~---------~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ---------TENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC---------STTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             eEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC---------ccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            788884  666666656789999998 45432 11110         1234578889999998777655 4 67777653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.14  E-value=4.5e-08  Score=90.44  Aligned_cols=223  Identities=10%  Similarity=0.042  Sum_probs=129.0

Q ss_pred             ceEEEEec-CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        345 DLFGFQFD-GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       345 ~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      ....|+++ +..+++...++.|..||..+++.. .+. ....+.+++++                               
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~-------------------------------   62 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALR-------------------------------   62 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEB-------------------------------
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEEC-------------------------------
Confidence            34557884 556666777889999999876642 222 23455666654                               


Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeecc----CCccEEEEEe--cCCEEEEEeC---------CCcEEEEECCC-Cc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMG----HQSLTSGMEL--RNNILVSGNA---------DSTVKVWDIVS-GQ  487 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~--~~~~l~s~~~---------dg~i~iwd~~~-~~  487 (635)
                      ++|++++ +. ++.|.+||..+++.......    ....+..+.+  +++++++...         ...-.+|.+.. ++
T Consensus        63 ~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~  140 (297)
T 3g4e_A           63 QSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH  140 (297)
T ss_dssp             TTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred             CCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence            3333222 22 34455566555443222111    1234556665  4555554322         12334554442 33


Q ss_pred             eeEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEEC--CCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018        488 CLQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDV--KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS  562 (635)
Q Consensus       488 ~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  562 (635)
                      ......    .......+++  +++.| ++.+.++.|.+|++  .++........ ...     .........++++++|
T Consensus       141 ~~~~~~----~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~-~~~-----~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          141 VKKYFD----QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV-YKL-----EKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             EEEEEE----EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE-EEC-----CGGGCEEEEEEEBTTS
T ss_pred             EEEEee----ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE-EEC-----CCCCCCCCeeEECCCC
Confidence            322222    2334566777  57655 55566789999997  45543211000 000     0122456788999999


Q ss_pred             eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC-CCCeEEEEccC
Q psy18018        563 RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS-ETKLVCAVGSR  617 (635)
Q Consensus       563 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~d~~~l~~~~~  617 (635)
                      ++.++...++.|..||..+++.+..+.     .+...+++++|. ||++.|.+++.
T Consensus       211 ~lwva~~~~~~v~~~d~~tG~~~~~i~-----~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          211 KLWVACYNGGRVIRLDPVTGKRLQTVK-----LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEETTTEEEEECTTTCCEEEEEE-----CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCEEEEEcCCCceEEEEEE-----CCCCCceEEEEeCCCCCEEEEEcC
Confidence            988888778899999999999988873     344679999998 88876655443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.13  E-value=1.7e-07  Score=94.55  Aligned_cols=305  Identities=10%  Similarity=0.068  Sum_probs=171.8

Q ss_pred             cCCEEEEEeC-CCeEEEEeC-CCccceeeccccceeE----------EeeeccCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy18018        151 DGKLVVSGAY-DYMVKIWNP-DTEECLHAELQETEVE----------LSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT  218 (635)
Q Consensus       151 ~~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  218 (635)
                      .+..++.++. ++.|.-+|. .+++.+.+........          ..-....++++++++.|+.+..+|..+|+.+.+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            4566666776 888999999 8998887654332100          000112367899999999999999999999987


Q ss_pred             EeCCCC----CeE-EEEeeCCEEEEeeC------ceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018        219 LIGHTG----GVW-SSQMAGNIIISGST------DRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL  287 (635)
Q Consensus       219 ~~~h~~----~v~-~~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (635)
                      ......    .+. +....+..++.++.      ++.|..+|..+++..............      ...+.....    
T Consensus       141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~------~~~p~~~~~----  210 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV------RLAKDFNSA----  210 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH------TBCTTTTTT----
T ss_pred             ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc------ccCcccccc----
Confidence            653220    111 11223556666654      789999998876543321110000000      000000000    


Q ss_pred             cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC-----
Q psy18018        288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD-----  362 (635)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----  362 (635)
                                      ..+ .+.       .......|....      ........-...++.++...++.++.+     
T Consensus       211 ----------------~~~-~G~-------~~~g~~~w~~~~------~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~  260 (571)
T 2ad6_A          211 ----------------NPH-YGQ-------FGLGTKTWEGDA------WKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWN  260 (571)
T ss_dssp             ----------------CGG-GCC-------SSHHHHTSSTTG------GGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred             ----------------ccc-ccc-------cccccccCcccc------eecCCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence                            000 000       000000010000      000000011123456655666655532     


Q ss_pred             -----------CeEEEEEccCCceEEeeeCC--C--------ccee-EEEEeC---CEEEEEeCCCcEEEEEccCCccee
Q psy18018        363 -----------TSIRVWEAESGNLRHTLMGH--Q--------SLTS-GMELRN---NILVSGNADSTVKVWDIVSGTKKL  417 (635)
Q Consensus       363 -----------g~i~v~~~~~~~~~~~~~~~--~--------~~v~-~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~  417 (635)
                                 +.|..+|..+|+.+..++..  .        .++. ....++   ..++.++.+|.+.++|..+++...
T Consensus       261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w  340 (571)
T 2ad6_A          261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence                       35899999999998777532  1        1211 111223   357778889999999988876543


Q ss_pred             EEE------------------------------------------------EEeeCCcEEEEEe----------------
Q psy18018        418 MFR------------------------------------------------ICLFDGVHVVSGS----------------  433 (635)
Q Consensus       418 ~~~------------------------------------------------~~~~~~~~l~~~~----------------  433 (635)
                      ...                                                .++|+...+++..                
T Consensus       341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  420 (571)
T 2ad6_A          341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA  420 (571)
T ss_dssp             EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence            322                                                1334445555543                


Q ss_pred             ---------------------CCCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        434 ---------------------LDTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       434 ---------------------~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                                           .++.+..||+.+++.+.++....... ..+...+.+++.++.|+.++.+|.++++.+..
T Consensus       421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence                                 34789999999999888775432211 12344577888899999999999999999998


Q ss_pred             ecCC
Q psy18018        492 LSGR  495 (635)
Q Consensus       492 ~~~~  495 (635)
                      +...
T Consensus       501 ~~~~  504 (571)
T 2ad6_A          501 FKMP  504 (571)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            8753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.11  E-value=2.6e-07  Score=92.90  Aligned_cols=305  Identities=12%  Similarity=0.083  Sum_probs=170.5

Q ss_pred             cCCEEEEEeC-CCeEEEEeC-CCccceeecccccee-----------EEeeec-cCCCE----EEEEeCCCcEEEEECCC
Q psy18018        151 DGKLVVSGAY-DYMVKIWNP-DTEECLHAELQETEV-----------ELSHGY-ALRSR----IVSGSDDNTLKVWSATT  212 (635)
Q Consensus       151 ~~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~----l~~~~~dg~i~vwd~~~  212 (635)
                      .+..++.++. ++.|.-+|. .+++.+.+.......           ...... +.++.    +++++.|+.+..+|..+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            3566666776 788888898 888887765443211           001111 13444    89999999999999999


Q ss_pred             CeEEEEEeCCCC----CeE-EEEeeCCEEEEee------CceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018        213 GKCLRTLIGHTG----GVW-SSQMAGNIIISGS------TDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ  281 (635)
Q Consensus       213 ~~~~~~~~~h~~----~v~-~~~~~~~~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (635)
                      |+.+........    .+. +..+.+..++.++      .+|.|+.+|..+++..............      ...+...
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~------~~~p~~~  214 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL------LLASDFN  214 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH------TBCTTTT
T ss_pred             CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc------ccccccc
Confidence            999977653220    111 1122355666665      3799999998876543321110000000      0000000


Q ss_pred             cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC
Q psy18018        282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL  361 (635)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  361 (635)
                      .        +         .    ...+...       .....|...      .........-...++.++...++.++.
T Consensus       215 ~--------~---------~----~~~g~~~-------~g~~tw~g~------~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          215 I--------K---------N----PHYGQKG-------LGTGTWEGD------AWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             T--------T---------C----GGGCCTT-------HHHHTSSTT------GGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             c--------c---------c----ccccccc-------cccccCCCc------ceecCCCccccceeEeCCCCEEEEeCC
Confidence            0        0         0    0000000       000000000      000000011112346666677776665


Q ss_pred             C----------------CeEEEEEccCCceEEeeeCCCc----------cee-EEE-EeC---CEEEEEeCCCcEEEEEc
Q psy18018        362 D----------------TSIRVWEAESGNLRHTLMGHQS----------LTS-GME-LRN---NILVSGNADSTVKVWDI  410 (635)
Q Consensus       362 d----------------g~i~v~~~~~~~~~~~~~~~~~----------~v~-~l~-~~~---~~l~s~~~dg~i~iwd~  410 (635)
                      +                +.|..+|..+|+.+..++....          ++. .+. .++   ..++.++.+|.+.++|.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence            4                3799999999999877764321          121 111 124   46777889999999998


Q ss_pred             cCCcceeEEE------------------------------------------------EEeeCCcEEEEE----------
Q psy18018        411 VSGTKKLMFR------------------------------------------------ICLFDGVHVVSG----------  432 (635)
Q Consensus       411 ~~~~~~~~~~------------------------------------------------~~~~~~~~l~~~----------  432 (635)
                      .+++......                                                .++|+.+.+++.          
T Consensus       341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~  420 (599)
T 1w6s_A          341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (599)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence            8877554332                                                122233333221          


Q ss_pred             -----------------------e------CCCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEE
Q psy18018        433 -----------------------S------LDTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWD  482 (635)
Q Consensus       433 -----------------------~------~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd  482 (635)
                                             +      ..|.+..||+.+++.+.+........ ..+...+.+++.++.|+.++.||
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence                                   1      34789999999999887765321111 12455788888899999999999


Q ss_pred             CCCCceeEEecCC
Q psy18018        483 IVSGQCLQTLSGR  495 (635)
Q Consensus       483 ~~~~~~~~~~~~~  495 (635)
                      .++++.+.+++..
T Consensus       501 ~~tG~~lW~~~l~  513 (599)
T 1w6s_A          501 SDTGDLLWKFKIP  513 (599)
T ss_dssp             TTTCCEEEEEECS
T ss_pred             CCCCCEEEEeeCC
Confidence            9999999988753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.10  E-value=2e-07  Score=94.02  Aligned_cols=332  Identities=14%  Similarity=0.099  Sum_probs=184.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC---------eEEEEeeCCEEEEeeCceeEEEecccceeeeccccccc
Q psy18018        193 RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG---------VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDS  263 (635)
Q Consensus       193 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~  263 (635)
                      ++.+++++.++.|.-+|..+|+.+.++......         -..+.+.+..++.++.|+.+..+|..+++.........
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~  147 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFAD  147 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence            677777777555999999999999887644321         12334568888999999999999988765432211000


Q ss_pred             cCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCC
Q psy18018        264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV  343 (635)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (635)
                      ..                                                                       .......
T Consensus       148 ~~-----------------------------------------------------------------------~~~~~~~  156 (582)
T 1flg_A          148 HG-----------------------------------------------------------------------AGYTMTG  156 (582)
T ss_dssp             GG-----------------------------------------------------------------------GTCBCCS
T ss_pred             CC-----------------------------------------------------------------------cCccccc
Confidence            00                                                                       0000000


Q ss_pred             CceEEEEe---cCc-EEEEec------CCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc--
Q psy18018        344 PDLFGFQF---DGV-HVVSGS------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV--  411 (635)
Q Consensus       344 ~~~~~~s~---~~~-~l~~~~------~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~--  411 (635)
                      ..+  +..   +++ .+++++      .++.|+.+|..+|+.+........   .+............+.....|...  
T Consensus       157 sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~---~~~p~~~~~~~~~g~~g~~~w~~~~~  231 (582)
T 1flg_A          157 APT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG---HMGRLNGKDSTVTGDVKAPSWPDDRN  231 (582)
T ss_dssp             CCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT---CEEEETTEEEEESSCTTCTTSCBCTT
T ss_pred             CCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcc---ccccccCcccccccccccccCCCccc
Confidence            011  111   122 555654      378999999999998876543211   111111222222111111222211  


Q ss_pred             -----------CCcceeEEEEEeeCCcEEEEEeC--------------------C----CcEEEEeCCCCceeeeecc--
Q psy18018        412 -----------SGTKKLMFRICLFDGVHVVSGSL--------------------D----TSIRVWEAESGNLRHTLMG--  454 (635)
Q Consensus       412 -----------~~~~~~~~~~~~~~~~~l~~~~~--------------------d----~~i~~~d~~~~~~~~~~~~--  454 (635)
                                 .+........+.++...++.+..                    |    +.|..+|..+|+.+..++.  
T Consensus       232 ~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~  311 (582)
T 1flg_A          232 SPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTP  311 (582)
T ss_dssp             STTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESST
T ss_pred             cccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCC
Confidence                       00011111233445555555542                    2    5799999999998887653  


Q ss_pred             CC--------ccEEE-EE-ecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCcc----------ccc----------
Q psy18018        455 HQ--------SLTSG-ME-LRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH----------QSA----------  501 (635)
Q Consensus       455 ~~--------~~v~~-~~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~----------  501 (635)
                      |.        .++.. .. .+++   .++.++.+|.++++|..+++.+..+......          ..+          
T Consensus       312 ~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  391 (582)
T 1flg_A          312 NDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPL  391 (582)
T ss_dssp             TCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCC
T ss_pred             CCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCcc
Confidence            32        22221 11 2453   7888999999999999999888765532100          000          


Q ss_pred             -----------EE-----------EEEec--CCEEEEEe---------------------------------CCCcEEEE
Q psy18018        502 -----------VT-----------CLQFN--SRFVITSS---------------------------------DDGTVKLW  524 (635)
Q Consensus       502 -----------v~-----------~~~~~--~~~l~~~~---------------------------------~d~~i~vw  524 (635)
                                 +.           .+++|  ..++++..                                 .+|.|..|
T Consensus       392 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~  471 (582)
T 1flg_A          392 PEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAM  471 (582)
T ss_dssp             CCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEE
T ss_pred             ccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEE
Confidence                       00           11222  12222221                                 36789999


Q ss_pred             ECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018        525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       525 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                      |+.+++.+-.....            .++..-.+...+.+++.++.|+.++.||.++|+.+.++..- ......+   +.
T Consensus       472 D~~tG~~~W~~~~~------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~-~g~~a~P---~~  535 (582)
T 1flg_A          472 DPVSGKVVWEHKEH------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG-SGIVSPP---IT  535 (582)
T ss_dssp             CTTTCCEEEEEEES------------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCC---EE
T ss_pred             ECCCCCEEEEecCC------------CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC-CCcccCc---eE
Confidence            99999877665432            12222222234667778999999999999999999988531 1111222   55


Q ss_pred             eCCCCe-EEEEcc
Q psy18018        605 ASETKL-VCAVGS  616 (635)
Q Consensus       605 ~s~d~~-~l~~~~  616 (635)
                      +..||+ |+++.+
T Consensus       536 y~~~G~qYv~~~~  548 (582)
T 1flg_A          536 WEQDGEQYLGVTV  548 (582)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEECCEEEEEEEc
Confidence            567877 555443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.09  E-value=8.3e-09  Score=96.73  Aligned_cols=247  Identities=10%  Similarity=-0.044  Sum_probs=156.8

Q ss_pred             eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEccCCcceeEEE-----------
Q psy18018        364 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIVSGTKKLMFR-----------  420 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~-----------  420 (635)
                      .|.++|..+++.+..+.....+  .+.++  +..++++.          .++.|.+||+.+.+......           
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999988766666  67776  55666664          36889999999988766653           


Q ss_pred             -----EEeeCCcEEEEEeC--CCcEEE--EeCCCCceeeeeccCCccEEEEEec-CCEEEEEeCCCcEEEEECCC-----
Q psy18018        421 -----ICLFDGVHVVSGSL--DTSIRV--WEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVS-----  485 (635)
Q Consensus       421 -----~~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~-----  485 (635)
                           .++|||++++++..  +..+.+  +|..+   +.++.....  ..+.++ ...+++.+.|+.+.+.|+.+     
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence                 37889999998875  467888  88877   344432111  123344 34667778899999999886     


Q ss_pred             CceeEEec-CCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCc--eeeeeccceec-CceeEEeccCceecccccCC
Q psy18018        486 GQCLQTLS-GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE--FSTPLMSSFIL-NPFYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       486 ~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~  561 (635)
                      ++...... .......+. . ..++..++..+. +.+.+.|..+..  ....+...... .....  .......++|+||
T Consensus       200 ~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~--~p~g~~~v~~s~d  274 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF--RSAGFQMVAKLKN  274 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE--EECSSSCEEEETT
T ss_pred             CeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc--ccCcceeeEEcCC
Confidence            43321100 000012233 2 335566665666 899999997543  22221110000 00000  1112223679999


Q ss_pred             CeEEEEecC---------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc-CCCeeEeEEEEEee
Q psy18018        562 SRFVITSSD---------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS-RNGTEETKLLVLDF  630 (635)
Q Consensus       562 ~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~-~dg~~~~~l~~~d~  630 (635)
                      ++.+.++..         ++.+.++|+.+++.+..+..      ......|+|+|||+ ++++.. .++.    |.++|.
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~----VsVID~  344 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEV----LDIYDA  344 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTE----EEEEES
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCe----EEEEEC
Confidence            988776543         23566999999999988842      33688999999998 455555 4777    777776


Q ss_pred             ec
Q psy18018        631 DV  632 (635)
Q Consensus       631 ~~  632 (635)
                      ..
T Consensus       345 ~t  346 (368)
T 1mda_H          345 AS  346 (368)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.08  E-value=7.7e-08  Score=83.39  Aligned_cols=188  Identities=10%  Similarity=0.003  Sum_probs=126.8

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      ..+.+.+|.|+.+|+++++.+..+......-.++.+.++ +.+..-.++.+.+||..+.+.+.++...    ..-..+++
T Consensus        68 y~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----~eGwGLt~  143 (268)
T 3nok_A           68 FESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS----GEGWGLCY  143 (268)
T ss_dssp             EEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS----SCCCCEEE
T ss_pred             EEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC----CceeEEec
Confidence            344455666888888888777766211112245677655 5555557899999999999999999852    22246778


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe
Q psy18018        508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN  587 (635)
Q Consensus       508 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~  587 (635)
                      +++.|+.+..++.|.++|.++.+....+.......+      -..++.+.|. +|++.+..-.++.|.+.|.++|+.+..
T Consensus       144 Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          144 WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV  216 (268)
T ss_dssp             ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred             CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence            888888888899999999999988877654321111      1123445555 888777776788999999999999988


Q ss_pred             eeecc--------CCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        588 LVSLD--------SGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       588 ~~~~~--------~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +..-.        .....+....+|++|+++.|.+.+..=-   ++|.+.+
T Consensus       217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp---~~~ev~~  264 (268)
T 3nok_A          217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP---RLFEVRL  264 (268)
T ss_dssp             EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS---EEEEEEE
T ss_pred             EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC---ceEEEEE
Confidence            85321        1123356789999998765555444321   3555544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.08  E-value=3.3e-07  Score=92.38  Aligned_cols=61  Identities=23%  Similarity=0.290  Sum_probs=47.8

Q ss_pred             CCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGR  495 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  495 (635)
                      +|.+..||+.+++.+.+........ ..+...+.+++.++.|+.++.||.++++.+.+++..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence            5789999999999887765432211 123456788889999999999999999999988764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.05  E-value=8.3e-08  Score=90.13  Aligned_cols=190  Identities=15%  Similarity=0.165  Sum_probs=117.4

Q ss_pred             EeeCCcEEEEEeCC------CcEEEEeCCCCceeeeeccCCcc---EEEE--EecCCEEEEEe-----------------
Q psy18018        422 CLFDGVHVVSGSLD------TSIRVWEAESGNLRHTLMGHQSL---TSGM--ELRNNILVSGN-----------------  473 (635)
Q Consensus       422 ~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~---v~~~--~~~~~~l~s~~-----------------  473 (635)
                      +.|+| .++++..+      +.+.++|..+.+.+.++......   -..+  .++.+.+++..                 
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~  223 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK  223 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence            45666 44444433      78999999999999888633222   2224  44677777774                 


Q ss_pred             --CCCcEEEEECCCCceeEEecCCCcccccEEEEEe----cCCEEEEEe------CCCcEEEEECCCCceeeeeccceec
Q psy18018        474 --ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSS------DDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       474 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                        .+.+|.+||+.+++.+.++.....+ .....+.|    +++++++++      .+++|.+|....++...........
T Consensus       224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g-~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~  302 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKRIHSLTLGEEN-RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA  302 (462)
T ss_dssp             HHSCCEEEEEETTTTEEEEEEESCTTE-EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             hccCCEEEEEECCCCcEeeEEecCCCC-CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence              3688999999998888887752111 22334444    577777766      4668888777654322111100000


Q ss_pred             CceeE-E--------eccCceecccccCCCeEEEEecC-CCeEEEEeCCC---CceEEeeeeccCCCC------------
Q psy18018        542 NPFYF-L--------IYSQPLLCPHLQFNSRFVITSSD-DGTVKLWDVKT---GEFIRNLVSLDSGGS------------  596 (635)
Q Consensus       542 ~~~~~-~--------~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iwd~~~---~~~~~~~~~~~~~~~------------  596 (635)
                      .+... +        ........+.+||||++|.++.. .+.|.+||+.+   .+.+..+..   ++.            
T Consensus       303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t---GG~~~~~~~~~G~~~  379 (462)
T 2ece_A          303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL---GGIFHRADHPAGHKL  379 (462)
T ss_dssp             EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---BTTTTCBCCTTSCCC
T ss_pred             ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe---CCeeccccccccccC
Confidence            00000 0        00235778999999998887764 68999999863   344444421   111            


Q ss_pred             CceEEEEEeCCCCeEEEEcc
Q psy18018        597 GGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       597 ~~~i~~l~~s~d~~~l~~~~  616 (635)
                      .+.-..++++|||++|+++.
T Consensus       380 ~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          380 TGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEcCCCCEEEEEc
Confidence            11357899999999999988

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.03  E-value=2.4e-07  Score=80.42  Aligned_cols=189  Identities=14%  Similarity=0.066  Sum_probs=128.7

Q ss_pred             EEEEeCCC--cEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEE-eCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018        429 VVSGSLDT--SIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSG-NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       429 l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  504 (635)
                      +.+.+.+|  .|+.+|+.+++.+..+..... .-.++.+.++.|... -.++.+.+||..+.+.+.++...   . .=..
T Consensus        56 yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~---~-eG~g  131 (262)
T 3nol_A           56 YESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD---G-EGWG  131 (262)
T ss_dssp             EEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS---S-CCCC
T ss_pred             EEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC---C-CceE
Confidence            34444444  788888888888877764333 234567776655444 46889999999999999999852   1 2245


Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018        505 LQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF  584 (635)
Q Consensus       505 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~  584 (635)
                      ++++++.|+.+..++.|.++|..+.+....+.......+      -..++.+.+. +|++.+..-.++.|.+.|.++|+.
T Consensus       132 lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          132 LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred             EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence            778888888777788899999999988877654211111      0123345565 788777777788999999999999


Q ss_pred             EEeeeec--cC-----CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        585 IRNLVSL--DS-----GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       585 ~~~~~~~--~~-----~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +..+..-  .+     .........+||+|+++.|.+.+..=.   ++|.+.+.
T Consensus       205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp---~~~ev~~~  255 (262)
T 3nol_A          205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP---KVFEITLT  255 (262)
T ss_dssp             EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS---EEEEEEEE
T ss_pred             EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC---ceEEEEEe
Confidence            9888542  11     112346789999998776666665433   35555543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.02  E-value=1.2e-07  Score=88.07  Aligned_cols=222  Identities=11%  Similarity=0.101  Sum_probs=127.4

Q ss_pred             ceEEEEecCc-EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        345 DLFGFQFDGV-HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       345 ~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ....++++++ .+++...++.|..|+. +++ ...+..+...+..++++  ++++++...++.|..|+..          
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~----------  115 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD----------  115 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT----------
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC----------
Confidence            3466889888 5677777899999987 454 34444455566777775  3333322233445555432          


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeee---ccC-CccEEEEEe--cCCEEEE----EeC-------------CCcE
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTL---MGH-QSLTSGMEL--RNNILVS----GNA-------------DSTV  478 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~-~~~v~~~~~--~~~~l~s----~~~-------------dg~i  478 (635)
                                              ++.....   .+. ...+..+.+  +++++++    |..             .+.|
T Consensus       116 ------------------------g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v  171 (305)
T 3dr2_A          116 ------------------------GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV  171 (305)
T ss_dssp             ------------------------SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred             ------------------------CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence                                    2211100   000 011223333  4555554    221             2457


Q ss_pred             EEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCC------CcEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018        479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDD------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  550 (635)
                      ..+|..+++..... .    ......+++  +++.|+.+...      +.|++|++..+. +.....       ......
T Consensus       172 ~~~d~~~g~~~~~~-~----~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~-------~~~~~~  238 (305)
T 3dr2_A          172 YRLPPDGSPLQRMA-D----LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH-------FASVPD  238 (305)
T ss_dssp             EEECSSSCCCEEEE-E----ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE-------EECCSS
T ss_pred             EEEcCCCCcEEEEe-c----CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE-------EEECCC
Confidence            77777666543332 1    123445666  67877777665      689999987654 211110       000012


Q ss_pred             CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      .....++++++|++.+ +..+ .|.+|+. +++.+..+..     .. .+.+++|+|+++.|.+++.++     ||.++
T Consensus       239 ~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~-----~~-~~~~~~f~~d~~~L~it~~~~-----l~~~~  303 (305)
T 3dr2_A          239 GLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPT-----PG-TASNCTFDQAQQRLFITGGPC-----LWMLP  303 (305)
T ss_dssp             SCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEEC-----SS-CCCEEEECTTSCEEEEEETTE-----EEEEE
T ss_pred             CCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEEC-----CC-ceeEEEEeCCCCEEEEEcCCe-----EEEEE
Confidence            3456788999999555 4444 4999997 5777777632     22 488999999999888888776     55554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.02  E-value=3e-07  Score=85.90  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEcc
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIV  411 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~  411 (635)
                      ++++++|+.+++...++.|.+|+..+++.+..+..+...+.+++++  ++.|+ +...++.|..|++.
T Consensus       231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            4577788777777677889999988777666666666677777775  33233 33334555555544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.01  E-value=5.5e-07  Score=84.29  Aligned_cols=216  Identities=11%  Similarity=0.026  Sum_probs=123.4

Q ss_pred             eEEEEec-CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018        346 LFGFQFD-GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF  424 (635)
Q Consensus       346 ~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  424 (635)
                      ...++|+ +..+++...++.|..|+..+++.. .+. ....+.+++++                               +
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~-------------------------------~   99 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI-------------------------------S   99 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE-------------------------------E
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEe-------------------------------C
Confidence            3568886 455666667889999998876543 222 23345555554                               3


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceeeeecc----CCccEEEEEec--CCEEEEEeC------CCcEEEEECCCCceeEEe
Q psy18018        425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMG----HQSLTSGMELR--NNILVSGNA------DSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~~--~~~l~s~~~------dg~i~iwd~~~~~~~~~~  492 (635)
                      +++++++. . ..|.+||..+++.......    ....+..+.++  ++++++...      .+.|..++  +++... +
T Consensus       100 dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~  174 (326)
T 2ghs_A          100 DSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-L  174 (326)
T ss_dssp             TTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-E
T ss_pred             CCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-e
Confidence            33333322 2 2255666555543222111    12345666664  555554432      24455555  444332 2


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECC--CC-ceee--eeccceecCceeEEeccCceecccccCCCeE
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVK--TG-EFST--PLMSSFILNPFYFLIYSQPLLCPHLQFNSRF  564 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~--~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  564 (635)
                      ..   .......+++  +++.++.+ +.++.|.+|++.  ++ +...  .+..   ..     ........++++++|++
T Consensus       175 ~~---~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~---~~-----~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          175 FA---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID---ST-----GIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             EE---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE---CT-----TSSSEEEEEEECTTSCE
T ss_pred             eC---CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE---CC-----CCCCCCCeeEECCCCCE
Confidence            21   2234556777  57666444 557899999986  55 3211  1100   00     01234567889999998


Q ss_pred             EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC-CCCeEEEEcc
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS-ETKLVCAVGS  616 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~d~~~l~~~~  616 (635)
                      .++...++.|.+||. +++.+..+.     .+...+++++|+ +|++.|.+++
T Consensus       244 wva~~~~~~v~~~d~-~g~~~~~i~-----~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          244 WNARWGEGAVDRYDT-DGNHIARYE-----VPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEE-----CSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEEEeCCCEEEEECC-CCCEEEEEE-----CCCCCcEEEEEecCCCCEEEEEe
Confidence            887767788999998 677776663     334569999998 8887665443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.99  E-value=4.8e-08  Score=101.84  Aligned_cols=211  Identities=11%  Similarity=0.053  Sum_probs=122.4

Q ss_pred             ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCce-eeccCcceEEEEEEc-CCEEEEeeCC
Q psy18018         23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKV-LKGHDDHVITCLQFS-GSRIVSGSDD  100 (635)
Q Consensus        23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~-l~~h~~~vi~~~~~s-~~~l~s~~~d  100 (635)
                      +|...+ ..++||    |||++||.+....   -++...+.+||+.+++.+.. +.+..   ...++|+ ++.|+.++.+
T Consensus       126 ~~~~~l-~~~~~S----pDg~~lAy~~~~~---G~~~~~i~v~dl~tg~~~~~~~~~~k---~~~~~WsDg~~l~y~~~~  194 (693)
T 3iuj_A          126 DGTTAL-DQLSFS----RDGRILAYSLSLA---GSDWREIHLMDVESKQPLETPLKDVK---FSGISWLGNEGFFYSSYD  194 (693)
T ss_dssp             TSCCEE-EEEEEC----TTSSEEEEEEECS---SCCEEEEEEEETTTCSEEEEEEEEEE---SCCCEEETTTEEEEEESS
T ss_pred             CCcEEE-EEEEEC----CCCCEEEEEEecC---CCceEEEEEEECCCCCCCccccCCce---eccEEEeCCCEEEEEEec
Confidence            565555 899999    9999999643221   02345677899999886442 22211   1345666 8888887776


Q ss_pred             CcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCe----EEEEeeC-CCcceEEEEe--cCCEEEEEeC----CCeEEEEeC
Q psy18018        101 NTLKVWSATTGKCLLVSGSRDATLRVWHIESGE----CLHVLVG-HLAAVRCVQY--DGKLVVSGAY----DYMVKIWNP  169 (635)
Q Consensus       101 ~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~----~~~~l~~-h~~~v~~l~~--~~~~l~s~~~----dg~v~iwd~  169 (635)
                      ..      . +.. +........|++|++.+.+    ++..... |...+..+.+  ||++|+....    ++.|.++|+
T Consensus       195 ~~------~-~~~-~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          195 KP------D-GSE-LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             CC------C---------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred             Cc------c-ccc-ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence            42      0 000 0001122345666655543    2333333 4555677778  8988755442    358999999


Q ss_pred             CCcc-ceeeccccceeEEeeeccCCCEEEEEeC----CCcEEEEECCCCeE--EEEEeCCCCCeEEEEeeCCEEEEeeCc
Q psy18018        170 DTEE-CLHAELQETEVELSHGYALRSRIVSGSD----DNTLKVWSATTGKC--LRTLIGHTGGVWSSQMAGNIIISGSTD  242 (635)
Q Consensus       170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~l~s~~~d  242 (635)
                      .++. ....+............++++.++..+.    .+.|..+|+.++..  .+.+..|...+..+..+++.|+....+
T Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          267 SQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMV  346 (693)
T ss_dssp             TSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEE
T ss_pred             CCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEE
Confidence            8764 2333333322222223455666555443    36799999987654  345555655555666678877766654


Q ss_pred             e---eEEEecccc
Q psy18018        243 R---TLKGWSNAE  252 (635)
Q Consensus       243 g---~i~~w~~~~  252 (635)
                      +   .|++|++.+
T Consensus       347 ~g~~~l~~~d~~g  359 (693)
T 3iuj_A          347 DATARVEQFDYEG  359 (693)
T ss_dssp             TTEEEEEEECTTS
T ss_pred             CCeeEEEEEECCC
Confidence            3   688888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.97  E-value=2.3e-07  Score=96.69  Aligned_cols=224  Identities=15%  Similarity=0.107  Sum_probs=141.5

Q ss_pred             ceEEEEecCcEEEE-----ecCCCeEEEEEccCCceEEe-eeCCCcceeEEEE-eCCEEEEEeCCC-------------c
Q psy18018        345 DLFGFQFDGVHVVS-----GSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMEL-RNNILVSGNADS-------------T  404 (635)
Q Consensus       345 ~~~~~s~~~~~l~~-----~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~-~~~~l~s~~~dg-------------~  404 (635)
                      ...++||||++++.     |+....|+++|+.+++.+.. +...  ....++| +++.|+.+..+.             .
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCcccccccccCCCcE
Confidence            34679999999884     33346799999999986543 2211  1233445 467777777664             3


Q ss_pred             EEEEEccCCcc--------------eeEEEEEeeCCcEEEEEeC----CCcEEEEeCCCCc-eeeeeccCCccEEE-EEe
Q psy18018        405 VKVWDIVSGTK--------------KLMFRICLFDGVHVVSGSL----DTSIRVWEAESGN-LRHTLMGHQSLTSG-MEL  464 (635)
Q Consensus       405 i~iwd~~~~~~--------------~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~v~~-~~~  464 (635)
                      |.+|++.+...              ......+++||++|+....    ++.++++|+.++. ....+..+...... +..
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~  289 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDN  289 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEec
Confidence            89999876532              1123357899998866543    3589999998764 34455555544433 555


Q ss_pred             cCCEEE-EEeCC---CcEEEEECCCCce--eEEecCCCcccccEEEEEecCCEEEEEeCCC---cEEEEECCCCceeeee
Q psy18018        465 RNNILV-SGNAD---STVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---TVKLWDVKTGEFSTPL  535 (635)
Q Consensus       465 ~~~~l~-s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~  535 (635)
                      +++.++ ....+   +.|..+|+.++..  ...+...  ....+ .++.+++.|+....++   .|++|++..+. ...+
T Consensus       290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l  365 (693)
T 3iuj_A          290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL-TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV  365 (693)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE-EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE-EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe
Confidence            666544 44433   5799999987654  2334331  22234 7777888777666544   68899987543 2222


Q ss_pred             ccceecCceeEEeccCceecccccCCCeEEEEecCC----CeEEEEeCCCCce
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----GTVKLWDVKTGEF  584 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~v~iwd~~~~~~  584 (635)
                      ..          .....+..+.++|+++.++....+    +++..||+.+++.
T Consensus       366 ~~----------p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          366 AL----------PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CC----------SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ec----------CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            21          123456677888888877665544    7899999988764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=4.5e-07  Score=79.98  Aligned_cols=207  Identities=11%  Similarity=0.016  Sum_probs=133.6

Q ss_pred             ceEEEEecCcEEEEecC--CCeEEEEEccCCceEEeeeCCCc-ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        345 DLFGFQFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~-~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      .-+.+++++..+++.+.  ++.|+++|+.+++.+..+..... ....+++.++.|+                        
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~ly------------------------   79 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLY------------------------   79 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEE------------------------
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEE------------------------
Confidence            35678888654444432  57999999999998887653221 2223443333222                        


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--cc
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQ  499 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~  499 (635)
                              ++.-.++.+.++|..+.+.+.++......-..++++++.++++..++.|.++|..+.+.+..+.....  ..
T Consensus        80 --------v~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           80 --------QVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             --------EEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             --------EEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence                    22334677888898888888877533122355888888777777789999999999988888764211  11


Q ss_pred             ccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCc--eeEEeccCceecccccCCCe-EEEEecCCCeEE
Q psy18018        500 SAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP--FYFLIYSQPLLCPHLQFNSR-FVITSSDDGTVK  575 (635)
Q Consensus       500 ~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~v~  575 (635)
                      .....+.+ +++.++....++.|.+.|..+++.+..+........  ..........+.++|+|+++ +++++...+.+.
T Consensus       152 ~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          152 IRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             ccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            13556666 565555555678999999999998887764211000  00000113457899999975 666677788899


Q ss_pred             EEeCCCCc
Q psy18018        576 LWDVKTGE  583 (635)
Q Consensus       576 iwd~~~~~  583 (635)
                      +.++...+
T Consensus       232 ~i~l~~~~  239 (266)
T 2iwa_A          232 EIKLHLVR  239 (266)
T ss_dssp             EEEEEECC
T ss_pred             EEEEeccc
Confidence            88876543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=1.4e-06  Score=75.04  Aligned_cols=182  Identities=11%  Similarity=0.039  Sum_probs=123.8

Q ss_pred             CcEEEEeCCCCceeeeeccCCc-cEEEEEecCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEE
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQS-LTSGMELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVI  513 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  513 (635)
                      ..|+.+|+.+++.+..+..... .-.++.+.++ +.+..-.++.+.+||..+.+.+.++...   . .-..++.+++.|+
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~---~-~Gwglt~dg~~L~  118 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP---G-EGWALTSDDSHLY  118 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS---S-CCCEEEECSSCEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC---C-CceEEeeCCCEEE
Confidence            4788888888888777654332 2245666655 4445557899999999999999999852   2 2256778888787


Q ss_pred             EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc-
Q psy18018        514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD-  592 (635)
Q Consensus       514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-  592 (635)
                      .+..++.|.++|.++.+....+.......+      -..++.+.+. +|++.+..-.+..|.+.|.++|+.+..+..-. 
T Consensus       119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l  191 (243)
T 3mbr_X          119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRP------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQAL  191 (243)
T ss_dssp             EECSSSEEEEECTTTCCEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGG
T ss_pred             EECCCCeEEEEeCCCCeEEEEEEEccCCcc------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcC
Confidence            777889999999999988777654321111      0123344444 78877777678899999999999998875321 


Q ss_pred             -C------CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        593 -S------GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       593 -~------~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                       +      ....+....+|++|++..|.+.+..=.   +||.+.+.
T Consensus       192 ~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp---~~~~v~~~  234 (243)
T 3mbr_X          192 VPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP---MLYEIRLT  234 (243)
T ss_dssp             STTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS---EEEEEEEC
T ss_pred             ccccccccCCcCCceEEEEEcCCCCEEEEECCCCC---cEEEEEEe
Confidence             1      112356789999997665555554332   36665554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.88  E-value=3.5e-07  Score=79.39  Aligned_cols=194  Identities=13%  Similarity=0.093  Sum_probs=129.9

Q ss_pred             EEeeeCCCc--ceeEEEEeCCEEE-EEeCCC--cEEEEEccCCcceeEEEE--------EeeCCcEEEEEe-CCCcEEEE
Q psy18018        376 RHTLMGHQS--LTSGMELRNNILV-SGNADS--TVKVWDIVSGTKKLMFRI--------CLFDGVHVVSGS-LDTSIRVW  441 (635)
Q Consensus       376 ~~~~~~~~~--~v~~l~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~~~-~d~~i~~~  441 (635)
                      +.++ .|..  -...+.++++.|. +.+.+|  .|+.+|+.+++.......        ..+++..|.... .++.+.+|
T Consensus        34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            3444 3443  3478888755444 445555  899999999887665542        334555555554 58899999


Q ss_pred             eCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCC-ccc-ccEEEEEe-cCCEEEEEeCC
Q psy18018        442 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRN-KHQ-SAVTCLQF-NSRFVITSSDD  518 (635)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~~v~~~~~-~~~~l~~~~~d  518 (635)
                      |..+.+.+.++.... .-.+++++++.|+.+..++.|.++|..+.+.+..+.... +.. ..+..+.+ +|+..+..-.+
T Consensus       113 D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~  191 (262)
T 3nol_A          113 NIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQT  191 (262)
T ss_dssp             ETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTS
T ss_pred             ECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccC
Confidence            999999999887533 224677888877777778889999999999888876521 111 23445666 67656555578


Q ss_pred             CcEEEEECCCCceeeeeccceecCcee-EEeccCceecccccCCCeEEEEecCC
Q psy18018        519 GTVKLWDVKTGEFSTPLMSSFILNPFY-FLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       519 ~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      ..|.+.|.++++.+..+.......... ........+.+|++|+++.|.+.+..
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            899999999999988876532211110 00112356889999987766666643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.87  E-value=4.3e-06  Score=80.66  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=42.9

Q ss_pred             cEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeEEecCCC------------cccccEEEEEec--CCEEEEEeCCCc
Q psy18018        458 LTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQCLQTLSGRN------------KHQSAVTCLQFN--SRFVITSSDDGT  520 (635)
Q Consensus       458 ~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~--~~~l~~~~~d~~  520 (635)
                      ...++++  +++++++-. .++.|+.|++.+++... +.+..            ..-.....++++  +.++++-..++.
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            3556666  466777777 78999999987776433 32210            012346677774  566666667777


Q ss_pred             EEEEEC
Q psy18018        521 VKLWDV  526 (635)
Q Consensus       521 i~vwd~  526 (635)
                      |+.+++
T Consensus       403 Ir~i~~  408 (409)
T 3hrp_A          403 IRKYAV  408 (409)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=2.7e-07  Score=80.00  Aligned_cols=183  Identities=13%  Similarity=0.056  Sum_probs=125.8

Q ss_pred             ceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEE--------EeeCCcEEEE-EeCCCcEEEEeCCCCceeeeecc
Q psy18018        385 LTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRI--------CLFDGVHVVS-GSLDTSIRVWEAESGNLRHTLMG  454 (635)
Q Consensus       385 ~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~  454 (635)
                      ....+.++++ +..+.+.+|.|+.+|+.+++..... .        ..+++..|.. .-.++.+.+||..+.+.+.++..
T Consensus        56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            3478888855 4555667788999999988877665 2        2334444444 44688999999999999998875


Q ss_pred             CCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--ccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCce
Q psy18018        455 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEF  531 (635)
Q Consensus       455 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~  531 (635)
                      . ..-.+++++++.|+.+..++.|.++|..+.+.+..+.....  .-..++.+.+ +|+..+..-.+..|.+.|.++++.
T Consensus       135 ~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          135 S-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             S-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBE
T ss_pred             C-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcE
Confidence            3 33357778888888887899999999999998888765211  1123456677 676555555688999999999999


Q ss_pred             eeeeccceecCcee--EEeccCceecccccCCCeEEEEec
Q psy18018        532 STPLMSSFILNPFY--FLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       532 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      +..+..........  ...-....+.+|++|+++.|++.+
T Consensus       214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            88876542111000  001234568899999766555444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=2.4e-07  Score=90.38  Aligned_cols=258  Identities=11%  Similarity=-0.032  Sum_probs=157.2

Q ss_pred             EEEecCCCeEEEEEccCCceEEeeeC---------------------------------C--------CcceeEEEE---
Q psy18018        356 VVSGSLDTSIRVWEAESGNLRHTLMG---------------------------------H--------QSLTSGMEL---  391 (635)
Q Consensus       356 l~~~~~dg~i~v~~~~~~~~~~~~~~---------------------------------~--------~~~v~~l~~---  391 (635)
                      |.+|+..|.++++-+.+++.+..+.-                                 +        ...-..+++   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            67888999999999988877665420                                 0        011234455   


Q ss_pred             --eCCEEEEEeC-CCcEEEEEccCCcceeEEE-----------EEe-eCCcEEEEEe------------------CCCcE
Q psy18018        392 --RNNILVSGNA-DSTVKVWDIVSGTKKLMFR-----------ICL-FDGVHVVSGS------------------LDTSI  438 (635)
Q Consensus       392 --~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-----------~~~-~~~~~l~~~~------------------~d~~i  438 (635)
                        ++++++.... +..|.+.|+.+.+......           ... |+++++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              3556666554 5679999998876554322           124 8999998885                  23579


Q ss_pred             EEEeCCCCceeeeecc-CCccEEEEEecCCEEEEEeCCC--------------------------------------cEE
Q psy18018        439 RVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNADS--------------------------------------TVK  479 (635)
Q Consensus       439 ~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg--------------------------------------~i~  479 (635)
                      .+.|..+.+...++.- ..-.-..++++++++++.+.+.                                      .|.
T Consensus       178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999999888877653 2223344566777777776443                                      366


Q ss_pred             EEECCC--Cce-eEEecC-CCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCceee--eeccceecCceeEEeccCc
Q psy18018        480 VWDIVS--GQC-LQTLSG-RNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGEFST--PLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       480 iwd~~~--~~~-~~~~~~-~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~  552 (635)
                      +.|.++  ++. +..+.. ...|   -..++.||+++++++ .+.+|.++|+.+.+...  .+...  ........-...
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~Ph---Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~--~~v~~~v~vG~g  332 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPH---GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR--SAVVAEPELGLG  332 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCC---CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG--GGEEECCBCCSC
T ss_pred             EEeCcccCCceeEEEEecCCCce---EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc--cceEEEcCCCCC
Confidence            677666  333 344432 1111   122444788776665 67899999999653110  00000  000011112445


Q ss_pred             eecccccCCCeEEEEecCCCeEEEEeCCC----------CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018        553 LLCPHLQFNSRFVITSSDDGTVKLWDVKT----------GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                      ...++|+|||...++.-.|+.|.+||+.+          .+.+..+...-..+|...-..+.++|||++|+++..-
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            67889999996666777899999999987          4556666321111221112233568999999987653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.83  E-value=1.4e-06  Score=74.99  Aligned_cols=193  Identities=9%  Similarity=0.015  Sum_probs=128.7

Q ss_pred             EEeeeCCCc--ceeEEEEeCCEEEEEe-CC--CcEEEEEccCCcceeEEEE--------EeeCCcEEEE-EeCCCcEEEE
Q psy18018        376 RHTLMGHQS--LTSGMELRNNILVSGN-AD--STVKVWDIVSGTKKLMFRI--------CLFDGVHVVS-GSLDTSIRVW  441 (635)
Q Consensus       376 ~~~~~~~~~--~v~~l~~~~~~l~s~~-~d--g~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~-~~~d~~i~~~  441 (635)
                      +.++ .|..  ....+.|+++.|..++ .+  ..|+.+|+.+++.......        ....+..|.. .-.++.+.+|
T Consensus        12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            3444 4443  5678888866555554 43  4899999998877665542        2334444444 4568899999


Q ss_pred             eCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--ccccEEEEEe-cCCEEEEEeCC
Q psy18018        442 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQSAVTCLQF-NSRFVITSSDD  518 (635)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~l~~~~~d  518 (635)
                      |..+.+.+.++.... .-.+++.+++.|+.+..++.|.++|..+.+.+..+.....  .-..++.+.+ +|+.++..-.+
T Consensus        91 D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s  169 (243)
T 3mbr_X           91 DLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLT  169 (243)
T ss_dssp             ETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTT
T ss_pred             ECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCC
Confidence            999999999887543 2357778888777777789999999999998888765210  1134556667 56655555567


Q ss_pred             CcEEEEECCCCceeeeeccceecCceeE--EeccCceecccccCCCeEEEEecC
Q psy18018        519 GTVKLWDVKTGEFSTPLMSSFILNPFYF--LIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       519 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      ..|.+.|.++++.+..+...........  .......+.+|++|+++.|.+.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            8999999999999888765422211100  012345688999997665555543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.80  E-value=4.6e-06  Score=76.84  Aligned_cols=201  Identities=11%  Similarity=0.055  Sum_probs=113.2

Q ss_pred             EEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc----cceeEEe
Q psy18018        114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ----ETEVELS  187 (635)
Q Consensus       114 ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~  187 (635)
                      ++++...++.|..||.++++. ..+ .....+.++++  +|+++++ . ++.|.+||..+++.......    .......
T Consensus        27 l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d  102 (297)
T 3g4e_A           27 LLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFND  102 (297)
T ss_dssp             EEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence            334444455556666555543 222 23467889999  7775444 4 67899999988764322111    1122223


Q ss_pred             eeccCCCEEEEEeC----------CCcEEEEECCC-CeEEEEEeCCCCCeEEEEee--CCEE-EEeeCceeEEEeccc--
Q psy18018        188 HGYALRSRIVSGSD----------DNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA--GNII-ISGSTDRTLKGWSNA--  251 (635)
Q Consensus       188 ~~~~~~~~l~~~~~----------dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~--  251 (635)
                      ..+.++.+++.++.          ...-.+|.+.. ++.. .+..+......++++  ++.+ ++.+.++.|..|++.  
T Consensus       103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~  181 (297)
T 3g4e_A          103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ  181 (297)
T ss_dssp             EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred             EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence            33333444555442          12334554443 3332 233334456778884  6555 555667889999863  


Q ss_pred             ceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhh
Q psy18018        252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE  331 (635)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (635)
                      ++.+...+..                                   ..+                                
T Consensus       182 ~G~~~~~~~~-----------------------------------~~~--------------------------------  194 (297)
T 3g4e_A          182 TGQISNRRSV-----------------------------------YKL--------------------------------  194 (297)
T ss_dssp             TCCEEEEEEE-----------------------------------EEC--------------------------------
T ss_pred             CCcccCcEEE-----------------------------------EEC--------------------------------
Confidence            2211000000                                   000                                


Q ss_pred             hhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe
Q psy18018        332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  392 (635)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~  392 (635)
                            ......+..++++++|++.++....+.|..||..+++.+..+..+...+++++|.
T Consensus       195 ------~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          195 ------EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             ------CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             ------CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence                  0000122345688889877777777889999999899998888887889999997

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.73  E-value=0.00065  Score=73.98  Aligned_cols=162  Identities=8%  Similarity=0.177  Sum_probs=101.3

Q ss_pred             CeEEEEEccCCceEEeeeCCC-cceeEEEE---e---CCEEEEEe----------CCCcEEEEEccCCcceeEEE-----
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQ-SLTSGMEL---R---NNILVSGN----------ADSTVKVWDIVSGTKKLMFR-----  420 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~-~~v~~l~~---~---~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~-----  420 (635)
                      +.|++.|..+.+.+..+.-.. ..+.+++.   .   ..++++|+          ..|.|.+|++...+......     
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            468888888887766554332 34445443   2   36788776          35789999987443222222     


Q ss_pred             ----EEeeCCcEEEEEeCCCcEEEEeCCCCceee-eeccCCc-cEEEEEecCCEEEEEeCCCcEEEEECC--CCceeEEe
Q psy18018        421 ----ICLFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIV--SGQCLQTL  492 (635)
Q Consensus       421 ----~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~  492 (635)
                          +...+| +|++| ...++++|++...+.+. ....... .+..+...+++++.|..-..+.++..+  .++....-
T Consensus       887 ~v~al~~~~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a  964 (1158)
T 3ei3_A          887 AVYSMVEFNG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA  964 (1158)
T ss_dssp             CEEEEEEETT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred             cCEEEeeeCC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence                234466 44444 35789999998765433 1111211 133555678999999988888776543  33322222


Q ss_pred             cCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018        493 SGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      .  ......++++.+ +...++.+..+|.+.+.....
T Consensus       965 ~--D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          965 R--DFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             E--CCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             e--ecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence            2  224567888888 777888999999999988765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.71  E-value=3e-06  Score=82.87  Aligned_cols=195  Identities=8%  Similarity=0.020  Sum_probs=121.1

Q ss_pred             CCcEEEEEeC-CCcEEEEeCCCCceeeeeccC-CccEEEEE----ecCCEEEEEe------------------CCCcEEE
Q psy18018        425 DGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH-QSLTSGME----LRNNILVSGN------------------ADSTVKV  480 (635)
Q Consensus       425 ~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~----~~~~~l~s~~------------------~dg~i~i  480 (635)
                      ||+++..... ++.|.+.|+.+.+....+.-. ......+.    ++++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            6777777665 457999999999987744322 12345555    4677888874                  2457999


Q ss_pred             EECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC---------------cEEEEECCCCc-------e-----ee
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---------------TVKLWDVKTGE-------F-----ST  533 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---------------~i~vwd~~~~~-------~-----~~  533 (635)
                      .|..+.+...++.... .. .-..+..+|+++++.+.+.               .+.+.|....+       .     +.
T Consensus       180 ID~~t~~v~~qI~Vgg-~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC-Cc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999998888876421 11 2233555788888887553               24444433211       0     11


Q ss_pred             eecccee-cCc-eeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCc------------eEEeeeeccCCCCCc
Q psy18018        534 PLMSSFI-LNP-FYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGE------------FIRNLVSLDSGGSGG  598 (635)
Q Consensus       534 ~~~~~~~-~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~------------~~~~~~~~~~~~~~~  598 (635)
                      .+..... ... ...+.......++.++|||+++++++ .+.+|.++|+.+.+            ...++      ....
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v------~vG~  331 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP------ELGL  331 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC------BCCS
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc------CCCC
Confidence            1111100 001 12333344567899999999877765 67899999999763            33333      2345


Q ss_pred             eEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        599 VVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ....++|+|||....+...|+.    +..||.+
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsq----V~kwdi~  360 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQ----VVKWNIE  360 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTE----EEEEEHH
T ss_pred             CcceEEECCCCeEEEEEecCCc----EEEEEhh
Confidence            6889999999965566777776    4445544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.70  E-value=1.3e-06  Score=82.49  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             cceEEEEEEc--CCEEEEee--CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCE
Q psy18018         81 DHVITCLQFS--GSRIVSGS--DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKL  154 (635)
Q Consensus        81 ~~vi~~~~~s--~~~l~s~~--~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~  154 (635)
                      ..+ ..++++  |+.+++..  .++.++||.+.+++           +.-|-  ...  ....+|...+.++++  ++++
T Consensus        17 ~~p-~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-----------~~~~p--~~~--~~~~~~~~~p~gv~~d~~g~L   80 (343)
T 2qe8_A           17 LAP-GNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-----------LIPFP--PQS--GNAIITFDTVLGIKSDGNGIV   80 (343)
T ss_dssp             SCE-EEEEECTTSCEEEEECGGGCCSCSEEEEETTE-----------EEESC--CCC--SSCCCCCSCEEEEEECSSSEE
T ss_pred             CCc-ceEEECCCCCEEEEeCCCCCCceEEEEECCCC-----------eecCC--Ccc--cCcccceeEeeEEEEcCCCcE
Confidence            445 889998  78888754  23435666543332           22110  000  012246678899999  4444


Q ss_pred             EEEEeC-----CCeEEEEeCCCccceeeccccc------e-eEEeeeccCCCEEEEEe----CCCcEEEEECCCCeEEEE
Q psy18018        155 VVSGAY-----DYMVKIWNPDTEECLHAELQET------E-VELSHGYALRSRIVSGS----DDNTLKVWSATTGKCLRT  218 (635)
Q Consensus       155 l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~------~-~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~  218 (635)
                      .++-..     ++.|.+||+.+++.+..+....      . .......+.++.++.+.    .++.|.+||+.+++..+.
T Consensus        81 ~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           81 WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            444333     5799999999888655443211      1 11122222344554443    578999999998888777


Q ss_pred             EeCCCCCe---EEEEeeCCEEEEeeCceeEEEec
Q psy18018        219 LIGHTGGV---WSSQMAGNIIISGSTDRTLKGWS  249 (635)
Q Consensus       219 ~~~h~~~v---~~~~~~~~~l~s~~~dg~i~~w~  249 (635)
                      +.+|....   ..+..++..+.+.+.+|.++.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  194 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH  194 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceecee
Confidence            76553211   12233455566666677666553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.67  E-value=0.001  Score=72.54  Aligned_cols=173  Identities=14%  Similarity=0.174  Sum_probs=100.9

Q ss_pred             CcEEEEeCCCCceeeeeccCC-ccEEEEE---ec---CCEEEEEe----------CCCcEEEEECCCCceeEEecCCCcc
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQ-SLTSGME---LR---NNILVSGN----------ADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~-~~v~~~~---~~---~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                      +.+++.|..+.+.+..+.-.. ..+.++.   +.   ..++++|.          ..|.|++|++.+++ +..+.. ...
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~-~~v  884 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAE-KEV  884 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEE-EEE
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEE-EEc
Confidence            347777877777665554322 2334443   32   35888876          35789999987443 332221 125


Q ss_pred             cccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        499 QSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       499 ~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      .+++++++- +|++++..  ..++++|++...+.+. ....         .+. .|..+.....+.++++|+.-..|.+.
T Consensus       885 ~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~---------~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~  951 (1158)
T 3ei3_A          885 KGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELR-TECN---------HYN-NIMALYLKTKGDFILVGDLMRSVLLL  951 (1158)
T ss_dssp             SSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEE-EEEE---------ECC-CSCEEEEEEETTEEEEEESSBCEEEE
T ss_pred             CCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEE-EEee---------ccc-cEEEEEEeccCCEEEEEEhhheEEEE
Confidence            678888886 77555544  4789999998765443 1110         111 13222333357788888877777765


Q ss_pred             eC--CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        578 DV--KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       578 d~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      ..  ..++. ..+..   ......++++.|-.++ .++.+..+|.  +.++.+|.
T Consensus       952 ~y~~~~~~L-~~~a~---D~~~~~vta~~~ld~~-t~l~aD~~gN--l~vl~~~~  999 (1158)
T 3ei3_A          952 AYKPMEGNF-EEIAR---DFNPNWMSAVEILDDD-NFLGAENAFN--LFVCQKDS  999 (1158)
T ss_dssp             EEETTTTEE-EEEEE---CCSCBCEEEEEEEETT-EEEEEETTSE--EEEEEECT
T ss_pred             EEEcCCCeE-EEEEe---ecccccEEEEEEEccC-cEEEEcCCCc--EEEEecCC
Confidence            44  33333 33321   4456788999987665 5566888887  34444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.61  E-value=8.3e-06  Score=75.49  Aligned_cols=208  Identities=10%  Similarity=0.024  Sum_probs=124.6

Q ss_pred             CCccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      ....|..+.... ...+|+    |+|+ ++.+....        ..+..|+. +++ ...+..+...+ .+++++  |++
T Consensus        36 ~~~~l~~~~~~~-egp~~~----~~g~~l~~~d~~~--------~~i~~~~~-~g~-~~~~~~~~~~~-~gl~~d~dG~l   99 (305)
T 3dr2_A           36 RLLTLYDQATWS-EGPAWW----EAQRTLVWSDLVG--------RRVLGWRE-DGT-VDVLLDATAFT-NGNAVDAQQRL   99 (305)
T ss_dssp             CCEEEECCCSSE-EEEEEE----GGGTEEEEEETTT--------TEEEEEET-TSC-EEEEEESCSCE-EEEEECTTSCE
T ss_pred             ceEEEecCCcCc-cCCeEe----CCCCEEEEEECCC--------CEEEEEeC-CCC-EEEEeCCCCcc-ceeeECCCCCE
Confidence            445566666666 899999    8998 44444332        23445876 444 45566566656 899999  776


Q ss_pred             EEEeeCCCcEEEEECCCCcEE------------------------EEE-----eeC-------------CCcEEEEeCCC
Q psy18018         94 IVSGSDDNTLKVWSATTGKCL------------------------LVS-----GSR-------------DATLRVWHIES  131 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~l------------------------l~~-----~~~-------------dg~i~vwd~~~  131 (635)
                      +++...++.|.+|+.. |+..                        +..     |..             .+.|..+|.++
T Consensus       100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            6665566789999875 4332                        222     211             13455555555


Q ss_pred             CeEEEEeeCCCcceEEEEe--cCCEEEEEeCC------CeEEEEeCCCccceee---ccc-cceeEEeeeccCCCEEEEE
Q psy18018        132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYD------YMVKIWNPDTEECLHA---ELQ-ETEVELSHGYALRSRIVSG  199 (635)
Q Consensus       132 ~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d------g~v~iwd~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~  199 (635)
                      ++.....  +......++|  |++.|+.+...      +.|.+|++..+. +..   +.. ............+..|.++
T Consensus       179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~  255 (305)
T 3dr2_A          179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS  255 (305)
T ss_dssp             CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC
T ss_pred             CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe
Confidence            5433322  3344567888  78878777665      789999987543 111   000 0111112223334457777


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEE
Q psy18018        200 SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKG  247 (635)
Q Consensus       200 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~  247 (635)
                      +.+ .|.+|+. +++.+..+..+. .+..++|  +++.|+.++.++..++
T Consensus       256 ~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          256 SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            655 4999997 577777776555 5778888  4667777777765444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.60  E-value=2.8e-05  Score=72.55  Aligned_cols=185  Identities=10%  Similarity=-0.018  Sum_probs=106.7

Q ss_pred             EeeCC-cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCC-c
Q psy18018        422 CLFDG-VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRN-K  497 (635)
Q Consensus       422 ~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~  497 (635)
                      +++++ ..+++...++.|..||..+++... +. ....+.++.++  +++++ ++.+ .|.+||..+++......... .
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~~~~~~~~~~~  131 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDL  131 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcEEEEeeCCCCC
Confidence            34543 334444556778888887665432 22 23467777763  44554 4444 49999998877543322111 1


Q ss_pred             ccccEEEEEe--cCCEEEEEeC------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe-
Q psy18018        498 HQSAVTCLQF--NSRFVITSSD------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-  568 (635)
Q Consensus       498 ~~~~v~~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-  568 (635)
                      ....+..+++  +|+++++...      .+.|..++  +++... +..           .......++|+||++.|+.+ 
T Consensus       132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~-----------~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA-----------DISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE-----------EESSEEEEEECTTSCEEEEEE
T ss_pred             CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC-----------CCcccCCeEEcCCCCEEEEEE
Confidence            1245777888  4676655432      24455555  443221 111           12345678999999866544 


Q ss_pred             cCCCeEEEEeCC--CC-ceE--EeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        569 SDDGTVKLWDVK--TG-EFI--RNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       569 ~~d~~v~iwd~~--~~-~~~--~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +.++.|.+||+.  ++ +..  ..+...  .........++++++|.+.++...++.    |+.+|.
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~~~~~~p~gi~~d~~G~lwva~~~~~~----v~~~d~  258 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGA----VDRYDT  258 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTE----EEEECT
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEEC--CCCCCCCCeeEECCCCCEEEEEeCCCE----EEEECC
Confidence            567899999986  55 321  112111  223456788999999987776655554    666665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.52  E-value=1.1e-05  Score=83.54  Aligned_cols=260  Identities=10%  Similarity=0.095  Sum_probs=146.7

Q ss_pred             eEEEEe-cCcEEEEecCCC-----------eEEEEEccCCceE--EeeeC-CCcceeEEEE--eCCEEEEEeC-CCcEEE
Q psy18018        346 LFGFQF-DGVHVVSGSLDT-----------SIRVWEAESGNLR--HTLMG-HQSLTSGMEL--RNNILVSGNA-DSTVKV  407 (635)
Q Consensus       346 ~~~~s~-~~~~l~~~~~dg-----------~i~v~~~~~~~~~--~~~~~-~~~~v~~l~~--~~~~l~s~~~-dg~i~i  407 (635)
                      ..++.+ +++.++.|+.+.           .+.+||..+++-.  ..+.. +.....+.++  ++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455677 888888876532           5889998876532  22222 2233333443  4778888874 468999


Q ss_pred             EEccCCcceeE---------E-EEEeeCCcEEEEEe-CC-----CcEEEEeCCCCceeee-------eccCCccEEEEEe
Q psy18018        408 WDIVSGTKKLM---------F-RICLFDGVHVVSGS-LD-----TSIRVWEAESGNLRHT-------LMGHQSLTSGMEL  464 (635)
Q Consensus       408 wd~~~~~~~~~---------~-~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~-------~~~~~~~v~~~~~  464 (635)
                      ||..+.+....         . ....++++.++.|+ .+     ..+.+||..+++....       +...... ..+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeec
Confidence            99876542221         1 12335899999988 34     5789999987654332       0000000 01112


Q ss_pred             cCCEEEEEeCC---------CcEEEEECCCCceeEEecCCCc------ccccEEEEE---ecCCEEEEEeCCC-------
Q psy18018        465 RNNILVSGNAD---------STVKVWDIVSGQCLQTLSGRNK------HQSAVTCLQ---FNSRFVITSSDDG-------  519 (635)
Q Consensus       465 ~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~---~~~~~l~~~~~d~-------  519 (635)
                      ++..++.++.+         ..+..||..+............      ....-.++.   .++++++.|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            34444555444         3567888877654433322110      011223343   3688888888543       


Q ss_pred             ----cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----------CeEEEEeCCCCce
Q psy18018        520 ----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----------GTVKLWDVKTGEF  584 (635)
Q Consensus       520 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~v~iwd~~~~~~  584 (635)
                          .+.+||..+.+.........        .....-.+++..|++++++.|+.+           ..+.+||..+++.
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~m--------p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W  500 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGL--------YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF  500 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCC--------SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             CcceEEEcCCCCCCCeeEEccCCC--------CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence                57788887766443220000        011112234566899999999854           5689999988775


Q ss_pred             EEeeeeccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                      .. +....  ..........+.|||++++.|+.
T Consensus       501 ~~-~~~~~--~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          501 YK-QNPNS--IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EE-CCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred             ee-cCCCC--CccccccHhhcCCCcEEEecCCC
Confidence            43 21111  11122234456799999999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.50  E-value=0.00029  Score=63.54  Aligned_cols=236  Identities=10%  Similarity=0.038  Sum_probs=131.5

Q ss_pred             cEEEEecCCCeEEEEEccCCceE-----EeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEccCCcceeE-------
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLR-----HTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIVSGTKKLM-------  418 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~-----~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~-------  418 (635)
                      .+|+.+.. +.|+.+++......     ..+........+++++  ++.|+ +-...+.|..+++........       
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 47888887754321     1122223456788887  34444 445578899999876543211       


Q ss_pred             --EEEEeeCCcEEEEE-eCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeC---CCcEEEEECCCCceeE
Q psy18018        419 --FRICLFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNA---DSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       419 --~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~  490 (635)
                        ...+.+++..++.+ ...+.|.++++..................++++  +..|..+..   .+.|..+++.. ....
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence              12245555555544 456789999886443222222222345667775  355555443   36788888763 3333


Q ss_pred             EecCCCcccccEEEEEec--CCEE-EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        491 TLSGRNKHQSAVTCLQFN--SRFV-ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                      .+...  .......++++  +..| ++-...+.|.++|............            ......+++. ++.++++
T Consensus       160 ~~~~~--~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------------~~~P~gi~~d-~~~lyva  224 (267)
T 1npe_A          160 ILAQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------LQYPFAVTSY-GKNLYYT  224 (267)
T ss_dssp             EEECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------------CCSEEEEEEE-TTEEEEE
T ss_pred             EEEEC--CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------------CCCceEEEEe-CCEEEEE
Confidence            33211  22345667773  5555 4455568899999875432221110            1122344543 4555555


Q ss_pred             ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018        568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL  610 (635)
Q Consensus       568 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  610 (635)
                      ...++.|.++|..+++.+..+..    +.......+++.|++-
T Consensus       225 ~~~~~~v~~~d~~~g~~~~~i~~----g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          225 DWKTNSVIAMDLAISKEMDTFHP----HKQTRLYGITIALSQC  263 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEECC----SSCCCCCCEEEECSCC
T ss_pred             ECCCCeEEEEeCCCCCceEEEcc----ccccccceeeecCccC
Confidence            55678999999999998888742    2122356777777763

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.47  E-value=1.3e-05  Score=75.40  Aligned_cols=193  Identities=12%  Similarity=0.096  Sum_probs=115.0

Q ss_pred             CCcEEEE-EeCCCcEEEEeCCCC----ceeeeecc-------CCccEEE--EEecCCEEEEEeCC------CcEEEEECC
Q psy18018        425 DGVHVVS-GSLDTSIRVWEAESG----NLRHTLMG-------HQSLTSG--MELRNNILVSGNAD------STVKVWDIV  484 (635)
Q Consensus       425 ~~~~l~~-~~~d~~i~~~d~~~~----~~~~~~~~-------~~~~v~~--~~~~~~~l~s~~~d------g~i~iwd~~  484 (635)
                      ++++|++ +..+++|+++|+.+.    +...++..       ....-..  +.+++ +++++..+      |.+.++|..
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            4444444 445677888887654    45555520       0111111  22345 66666555      789999999


Q ss_pred             CCceeEEecCCCcccccEEEE--EecCCEEEEEe-------------------CCCcEEEEECCCCceeeeeccceecCc
Q psy18018        485 SGQCLQTLSGRNKHQSAVTCL--QFNSRFVITSS-------------------DDGTVKLWDVKTGEFSTPLMSSFILNP  543 (635)
Q Consensus       485 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~  543 (635)
                      +++.+..+........--..+  ..+++.+++..                   .+.+|.+||+.+++.+..+....   .
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~---~  249 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE---E  249 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT---T
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC---C
Confidence            999999887421111112224  34678888774                   36889999999987666654320   0


Q ss_pred             eeEEeccCceec--ccccCCCeEEEEec------CCCeEEEEeCCCCceEEeeeec--cCC---C-----------CCce
Q psy18018        544 FYFLIYSQPLLC--PHLQFNSRFVITSS------DDGTVKLWDVKTGEFIRNLVSL--DSG---G-----------SGGV  599 (635)
Q Consensus       544 ~~~~~~~~~v~~--~~~s~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~--~~~---~-----------~~~~  599 (635)
                            ......  ++|+|+++++.+++      .+++|.+|....++.- ....+  ...   +           ....
T Consensus       250 ------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          250 ------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             ------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             ------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCc
Confidence                  011222  45699999888877      4568888776654321 11111  000   0           0245


Q ss_pred             EEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        600 VWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       600 i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ...+.+|+||++|.++.....   .|.+||.+
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d---~VavfdV~  351 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIG---EVRQYDIS  351 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTT---EEEEEECS
T ss_pred             eeEEEECCCCCEEEEEeCCCC---EEEEEEec
Confidence            788999999999988877543   36666654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.42  E-value=0.0024  Score=64.86  Aligned_cols=177  Identities=11%  Similarity=0.022  Sum_probs=95.2

Q ss_pred             CCCcEEEEeCCCCceeee-ec-cCCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018        434 LDTSIRVWEAESGNLRHT-LM-GHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN  508 (635)
Q Consensus       434 ~d~~i~~~d~~~~~~~~~-~~-~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  508 (635)
                      ..+.|+..++........ +. ..-..+.+++++.  + ++++-...+.|+.+++........+..   .......+++|
T Consensus       324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~---~~~~p~GlAvD  400 (619)
T 3s94_A          324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA---QIAHPDGIAVD  400 (619)
T ss_dssp             ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEE
T ss_pred             cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---CCCCcCceEEe
Confidence            345667677665432111 11 1123456777763  4 444444577888888875433333322   22234456664


Q ss_pred             ---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-CeEEEEe-cCCCeEEEEeCCCCc
Q psy18018        509 ---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITS-SDDGTVKLWDVKTGE  583 (635)
Q Consensus       509 ---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~-~~d~~v~iwd~~~~~  583 (635)
                         ++++++-+..+.|.+.++.... ...+...          .-.....+++.|. |.+.++- +....|...++. |.
T Consensus       401 ~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~----------~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~  468 (619)
T 3s94_A          401 WVARNLYWTDTGTDRIEVTRLNGTM-RKILISE----------DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GS  468 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCS-CEEEECT----------TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred             cccCcEEEEeCCCCcEEEEeCCCCe-EEEEEEC----------CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CC
Confidence               4555565667889999887543 2222111          1234678889986 5544443 223667777765 33


Q ss_pred             eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        584 FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       584 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ....+.    ...-.....|++++++..|..+.....   +|+.+|++.
T Consensus       469 ~~~~l~----~~~l~~P~GlalD~~~~~LY~aD~~~~---~I~~~~~dG  510 (619)
T 3s94_A          469 DRVVLV----NTSLGWPNGLALDYDEGKIYWGDAKTD---KIEVMNTDG  510 (619)
T ss_dssp             SCEEEE----CSSCSCEEEEEEETTTTEEEEEETTTT---EEEEEESSS
T ss_pred             ccEEEE----eCCCCCCeeeEEcccCCEEEEEECCCC---EEEEEecCC
Confidence            223332    122345678999987666665554432   366666643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.33  E-value=0.001  Score=61.30  Aligned_cols=227  Identities=10%  Similarity=0.003  Sum_probs=118.5

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL  423 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  423 (635)
                      ...++++++++.+++-..++.|..||... .....+.. ......++++                               
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~-------------------------------   80 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFT-------------------------------   80 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEEC-------------------------------
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEc-------------------------------
Confidence            34567888888777766788898888764 33222221 2334455553                               


Q ss_pred             eCCcEEEEEeCC--CcEEEEeCCCCceeeeecc-CCccEEEEE-ecCCE-EEEEeCCCcEEEEECCCCce-eEEec----
Q psy18018        424 FDGVHVVSGSLD--TSIRVWEAESGNLRHTLMG-HQSLTSGME-LRNNI-LVSGNADSTVKVWDIVSGQC-LQTLS----  493 (635)
Q Consensus       424 ~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~-~~~~v~~~~-~~~~~-l~s~~~dg~i~iwd~~~~~~-~~~~~----  493 (635)
                      ++++.+++....  ..+..++..+++....... .......+. +.+.. +++-..++.|+.+|...++. +....    
T Consensus        81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~  160 (306)
T 2p4o_A           81 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA  160 (306)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred             CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence            233322222111  1244444444443221111 111112222 23344 44444578888888765421 11100    


Q ss_pred             --CCCcccccEEEEEecCCEEE-EEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        494 --GRNKHQSAVTCLQFNSRFVI-TSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       494 --~~~~~~~~v~~~~~~~~~l~-~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                        ...........+..++++|+ +-...+.|..+++.. ++.. ...         ..........++++++|++.++..
T Consensus       161 ~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~-~~~---------~~~~~~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          161 RSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG-EPE---------IFVEQTNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             CSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBC-CCE---------EEEESCCCSSEEEBTTCCEEEECB
T ss_pred             cccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCC-ccE---------EEeccCCCCCeEECCCCCEEEEeC
Confidence              00011123444567776554 445678899999875 3311 000         000113456789999999888777


Q ss_pred             CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC---CCCeEEEEccC
Q psy18018        570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS---ETKLVCAVGSR  617 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~d~~~l~~~~~  617 (635)
                      ..+.|.++|.. ++..... ..  .......++++|.   ||+..|.+++.
T Consensus       231 ~~~~V~~~~~~-G~~~~~~-~~--~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          231 IYNSVVRIAPD-RSTTIIA-QA--EQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TTCCEEEECTT-CCEEEEE-CG--GGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCeEEEECCC-CCEEEEe-ec--ccccCCceEEEEecccCCCCEEEEECC
Confidence            78899999975 6653211 11  1122457899999   88776665544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.31  E-value=0.0011  Score=59.71  Aligned_cols=189  Identities=10%  Similarity=0.039  Sum_probs=114.4

Q ss_pred             CceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEE-EeCCCcEEEEEccCCccee--
Q psy18018        344 PDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVS-GNADSTVKVWDIVSGTKKL--  417 (635)
Q Consensus       344 ~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s-~~~dg~i~iwd~~~~~~~~--  417 (635)
                      +..+++++++..|+ +-..++.|..++...+.....+.........++++  +..++. -...+.|.++++.......  
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  117 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF  117 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence            34567888655554 44557899999987655443333333467788886  345544 4556789888886543211  


Q ss_pred             -------EEEEEeeCCcEEEEEeC---CCcEEEEeCCCCceeeeec-cCCccEEEEEec--CCEE-EEEeCCCcEEEEEC
Q psy18018        418 -------MFRICLFDGVHVVSGSL---DTSIRVWEAESGNLRHTLM-GHQSLTSGMELR--NNIL-VSGNADSTVKVWDI  483 (635)
Q Consensus       418 -------~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~  483 (635)
                             .-..+++++..|..+..   .+.|..+++... ....+. .......+++++  ++.| ++-...+.|..+|+
T Consensus       118 ~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence                   12235666666665554   367888887643 222222 223345667774  4444 55556688999999


Q ss_pred             CCCceeEEecCCCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCceeeeecc
Q psy18018        484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      ........+..    ......++.++..|+.+. ..+.|.++|..+++.+..+..
T Consensus       197 ~g~~~~~~~~~----~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          197 AQPGRRKVLEG----LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             TEEEEEEEEEC----CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             CCCceEEEecC----CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            75543333332    122345667666665555 568999999999987776643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.23  E-value=8.9e-05  Score=76.65  Aligned_cols=214  Identities=11%  Similarity=0.047  Sum_probs=121.7

Q ss_pred             EEEEecCcEEEEecC-CCeEEEEEccCCceEEeeeCC--CcceeEEEE-eCCEEEEEe-CC-----CcEEEEEccCCcce
Q psy18018        347 FGFQFDGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH--QSLTSGMEL-RNNILVSGN-AD-----STVKVWDIVSGTKK  416 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~--~~~v~~l~~-~~~~l~s~~-~d-----g~i~iwd~~~~~~~  416 (635)
                      .++.++++.++.|+. +..+.+||..+.+-...-..+  .....+... ++.+++.|+ .+     ..+.+||..+.+..
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            456678898888884 468999998876543322222  222334445 577888887 34     46899998876533


Q ss_pred             eEE-----E--------EEeeCCcEEEEEeCCC---------cEEEEeCCCCceeeeeccCCc---------cEEEEE--
Q psy18018        417 LMF-----R--------ICLFDGVHVVSGSLDT---------SIRVWEAESGNLRHTLMGHQS---------LTSGME--  463 (635)
Q Consensus       417 ~~~-----~--------~~~~~~~~l~~~~~d~---------~i~~~d~~~~~~~~~~~~~~~---------~v~~~~--  463 (635)
                      ...     .        .+..++..++.++.++         .+..||..+.........+..         .-.++.  
T Consensus       328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~  407 (656)
T 1k3i_A          328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD  407 (656)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred             eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEecc
Confidence            210     0        0113445555565443         467788877654333222211         123333  


Q ss_pred             -ecCCEEEEEeCCC-----------cEEEEECCCCceeEEe--cCCCcccccEEEEEe-cCCEEEEEeCC----------
Q psy18018        464 -LRNNILVSGNADS-----------TVKVWDIVSGQCLQTL--SGRNKHQSAVTCLQF-NSRFVITSSDD----------  518 (635)
Q Consensus       464 -~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~-~~~~l~~~~~d----------  518 (635)
                       .++++++.|+.++           .+.+||..+.+-....  ..+. ......++.. ++++++.|+.+          
T Consensus       408 ~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~-~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF-ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS-CCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC-CcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence             2567888887543           6788888776544332  1111 1222333444 89999999864          


Q ss_pred             -CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        519 -GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       519 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                       ..+.+||..+.+....-..     +..    .....+..+.||+++++.|+.
T Consensus       487 ~~~v~~ydp~t~~W~~~~~~-----~~~----R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          487 VFTPEIYVPEQDTFYKQNPN-----SIV----RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCCEEEEGGGTEEEECCCC-----SSC----CCTTEEEEECTTSCEEEEECC
T ss_pred             ccceEEEcCCCCceeecCCC-----CCc----cccccHhhcCCCcEEEecCCC
Confidence             4689999887654331111     000    111123345689999999885

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.13  E-value=0.0021  Score=59.68  Aligned_cols=137  Identities=12%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             CCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccC
Q psy18018        475 DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ  551 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (635)
                      ++.|..+|..+++.......    ......+++  +++.|+.+ +.++.|.+|++...... ....      +  .....
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~------~--~~~~g  230 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEV------L--VKIPN  230 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEE------E--EECSS
T ss_pred             CceEEEEeCCCCEEEEeccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccce------E--EeCCC
Confidence            36688888766654322221    112234566  56755555 55688999998753210 0000      0  00112


Q ss_pred             ceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee
Q psy18018        552 PLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE  621 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~  621 (635)
                       ...++++++|++.++...          .+.|..+|. +++.+..+..... ..-..++.+++ .++++.++...++. 
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g-~~~~~~~~~~~-~~g~L~v~~~~~~~-  305 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPP-FAGEHFEQIQE-HDGLLYIGTLFHGS-  305 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTT-TTTSCCCEEEE-ETTEEEEECSSCSE-
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCC-CccccceEEEE-eCCEEEEeecCCCc-
Confidence             566889999987776544          467888886 4777766642111 11244666766 46776666656665 


Q ss_pred             EeEEEEEeeec
Q psy18018        622 ETKLLVLDFDV  632 (635)
Q Consensus       622 ~~~l~~~d~~~  632 (635)
                         |..++++.
T Consensus       306 ---i~~~~~~~  313 (322)
T 2fp8_A          306 ---VGILVYDK  313 (322)
T ss_dssp             ---EEEEEC--
T ss_pred             ---eEEEeccc
Confidence               66666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.04  E-value=0.016  Score=58.90  Aligned_cols=156  Identities=5%  Similarity=-0.036  Sum_probs=85.7

Q ss_pred             ccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCC---cccccEEEEEec---CCEEEEEeCCCcEEEEECC
Q psy18018        457 SLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRN---KHQSAVTCLQFN---SRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       457 ~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~  527 (635)
                      ..+.++.++.  + ++.+=...+.|+.+++........+....   .....+..+++|   +++.++-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            3466777753  3 44444456778888776433222222100   012346677775   4455666677889999886


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCC--eEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDG--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR  604 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~  604 (635)
                       |+....+...          .......+++.| .|.+..+-....  .|...++. |.....+.    ...-.....|+
T Consensus       420 -G~~~~~l~~~----------~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~----~~~l~~P~gla  483 (628)
T 4a0p_A          420 -GRSVGVVLKG----------EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLF----FSGLSKPIALA  483 (628)
T ss_dssp             -SCEEEEEEEC----------TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEE----CSSCSCEEEEE
T ss_pred             -CCeEEEEEeC----------CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEE----eccCCCccEEE
Confidence             4433333211          124567889999 566655533333  56666665 43333332    11233468899


Q ss_pred             eCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        605 ASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       605 ~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +++++..|..+.....   +|+.+|++
T Consensus       484 ~D~~~~~LYw~D~~~~---~I~~~~~d  507 (628)
T 4a0p_A          484 LDSRLGKLFWADSDLR---RIESSDLS  507 (628)
T ss_dssp             EETTTTEEEEEETTTT---EEEEEETT
T ss_pred             EeCCCCEEEEEeCCCC---EEEEEeCC
Confidence            9998766665544322   36666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.98  E-value=0.0014  Score=59.66  Aligned_cols=190  Identities=11%  Similarity=0.178  Sum_probs=111.5

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe------cCC---EEEEEeC---CCcEEEEECC-CCceeE
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL------RNN---ILVSGNA---DSTVKVWDIV-SGQCLQ  490 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~------~~~---~l~s~~~---dg~i~iwd~~-~~~~~~  490 (635)
                      |....++.....+-+.+||+ +|+.++.+..  +.++.+..      .++   ++++...   +++|.+|++. ....+.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            34455666677788999999 7888888764  34444443      232   2333333   5789999763 222355


Q ss_pred             EecCC--C--cccccEEEEEe--c---CC-EEEEEeCCCcEEEEECC---CCceeeeeccceecCceeEEeccCceeccc
Q psy18018        491 TLSGR--N--KHQSAVTCLQF--N---SR-FVITSSDDGTVKLWDVK---TGEFSTPLMSSFILNPFYFLIYSQPLLCPH  557 (635)
Q Consensus       491 ~~~~~--~--~~~~~v~~~~~--~---~~-~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  557 (635)
                      .+...  .  .....+..+++  +   ++ ++++...+|.+..|++.   .+....++..        .+.....+..+.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR--------~f~lgsq~Egcv  186 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR--------AFKMNSQTEGMA  186 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE--------EEECSSCEEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE--------EecCCCCcceEE
Confidence            54221  0  01133344444  3   43 68888889999999983   3322222222        122345677888


Q ss_pred             ccCCCeEEEEecCCCeEEEEeCC-----CCceEEeeeeccCCCCCceEEEEEe--CCCCe-EEEEcc-CCCeeEeEEEEE
Q psy18018        558 LQFNSRFVITSSDDGTVKLWDVK-----TGEFIRNLVSLDSGGSGGVVWRIRA--SETKL-VCAVGS-RNGTEETKLLVL  628 (635)
Q Consensus       558 ~s~~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~~~~~~~~~~~~i~~l~~--s~d~~-~l~~~~-~dg~~~~~l~~~  628 (635)
                      ..+....|..+-++.-|..+|.+     +++.+..+.   .......+..|+.  .++++ +|++.+ .+.+    +-+|
T Consensus       187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~---~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s----~~Vy  259 (355)
T 3amr_A          187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD---GRHLTRDIEGLTIYYAADGKGYLMASSQGNSS----YAIY  259 (355)
T ss_dssp             EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS---SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE----EEEE
T ss_pred             EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec---CCccccCcceEEEEecCCCCEEEEEEcCCCCE----EEEE
Confidence            88888899999998766666644     344554431   1233346888887  56666 666555 4444    6666


Q ss_pred             eee
Q psy18018        629 DFD  631 (635)
Q Consensus       629 d~~  631 (635)
                      |.+
T Consensus       260 dr~  262 (355)
T 3amr_A          260 DRQ  262 (355)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.85  E-value=0.0063  Score=55.81  Aligned_cols=222  Identities=14%  Similarity=0.217  Sum_probs=125.5

Q ss_pred             cCcEEEEec-CC-----CeEEEEEccCCceEEe--eeCCCcceeEEEEeCCEEEEEeCC-----CcEEEEEccCCc---c
Q psy18018        352 DGVHVVSGS-LD-----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGT---K  415 (635)
Q Consensus       352 ~~~~l~~~~-~d-----g~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~~~d-----g~i~iwd~~~~~---~  415 (635)
                      ++..++.|+ .+     ..+..||..+.+-...  +............++.+++.|+.+     ..+.+||+.+.+   .
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            445566666 32     3688899876653221  122122223334456666777654     468889988766   3


Q ss_pred             eeE---------EEEEeeCCcEEEEEeCC-----CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC----
Q psy18018        416 KLM---------FRICLFDGVHVVSGSLD-----TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD----  475 (635)
Q Consensus       416 ~~~---------~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d----  475 (635)
                      ...         ......+++.++.|+.+     ..+.+||+.+.+-..  .+........+...++.+++.|+.+    
T Consensus        94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  173 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNI  173 (301)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred             EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcc
Confidence            222         11233467777777644     358889988765332  2222222233444577777777754    


Q ss_pred             -CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEec
Q psy18018        476 -STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       476 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  549 (635)
                       ..+.+||+.+.+-... ...........++..++++++.|+.+     ..+.+||..+.+........   .       
T Consensus       174 ~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~-------  242 (301)
T 2vpj_A          174 LNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT---T-------  242 (301)
T ss_dssp             CCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS---S-------
T ss_pred             cceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC---C-------
Confidence             4588999887654332 21111222334455688888888764     46899999887654322110   0       


Q ss_pred             cCceecccccCCCeEEEEecCC-----CeEEEEeCCCCceE
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDD-----GTVKLWDVKTGEFI  585 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~~~~  585 (635)
                       ......+...++++++.|+.+     ..+.+||+++.+..
T Consensus       243 -~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          243 -PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             -CCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             -cccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence             001111122378888888765     46889999887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.85  E-value=0.003  Score=57.93  Aligned_cols=195  Identities=14%  Similarity=0.142  Sum_probs=109.9

Q ss_pred             EeeCCcEEEEEeCC-----CcEEEEeCCCCc---eee--eeccCCccEEEEEecCCEEEEEeCC-----CcEEEEECCCC
Q psy18018        422 CLFDGVHVVSGSLD-----TSIRVWEAESGN---LRH--TLMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSG  486 (635)
Q Consensus       422 ~~~~~~~l~~~~~d-----~~i~~~d~~~~~---~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  486 (635)
                      ...++..++.|+.+     ..+.+||..+.+   -..  .+........+...++.+++.|+.+     ..+.+||+.+.
T Consensus        59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC
Confidence            44567777777755     468899988765   322  2222222333444567777777654     35889998876


Q ss_pred             ceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  561 (635)
                      +-...-..+. ......++..++++++.|+.+     ..+.+||..+.+........   .+        .....+...+
T Consensus       139 ~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~--------r~~~~~~~~~  206 (301)
T 2vpj_A          139 QWSMLGDMQT-AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA---TK--------RSGAGVALLN  206 (301)
T ss_dssp             EEEEEEECSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS---SC--------CBSCEEEEET
T ss_pred             eEEECCCCCC-CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC---cc--------cccceEEEEC
Confidence            5333221111 222334445588888888765     45889999887654331110   00        0011112237


Q ss_pred             CeEEEEecCC-----CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018        562 SRFVITSSDD-----GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD  633 (635)
Q Consensus       562 ~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~  633 (635)
                      +++++.|+.+     ..+.+||+.+.+....- ..+. +. .....+.  -++++++.|+.++. ..-.++.||++.+
T Consensus       207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~-~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-SMTT-PR-CYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-CCSS-CC-BSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CEEEEEeCCCCCcccceEEEEeCCCCcEEECC-CCCC-cc-cceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            7888888764     46899999988764332 1111 11 1112222  26788888876653 2246888888654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.80  E-value=0.0065  Score=55.87  Aligned_cols=181  Identities=10%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC------CcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        436 TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      ..+..||..+.+-..  .+........+...++.+++.|+.+      ..+.+||+.+.+-...-..+. ......++..
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~  148 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVEA  148 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEEEE
Confidence            456677776654322  1221122223344567777777765      458999998765333211111 2223344556


Q ss_pred             cCCEEEEEeC---------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----Ce
Q psy18018        508 NSRFVITSSD---------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GT  573 (635)
Q Consensus       508 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~  573 (635)
                      ++++++.|+.         -..+.+||..+.+........   .        ......+..-++++++.|+.+     ..
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~--------~r~~~~~~~~~~~i~v~GG~~~~~~~~~  217 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI---E--------ARKNHGLVFVKDKIFAVGGQNGLGGLDN  217 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS---S--------CCBSCEEEEETTEEEEECCEETTEEBCC
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc---c--------hhhcceEEEECCEEEEEeCCCCCCCCce
Confidence            7888787764         345889999887644322110   0        001111122277888887754     46


Q ss_pred             EEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018        574 VKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD  633 (635)
Q Consensus       574 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~  633 (635)
                      +.+||+.+.+....- ..+.  .......+.+  ++++++.|+.++. ..-.++.||++.+
T Consensus       218 ~~~yd~~~~~W~~~~-~~p~--~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          218 VEYYDIKLNEWKMVS-PMPW--KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEEETTTTEEEECC-CCSC--CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEEeeCCCCcEEECC-CCCC--CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            899999987654332 1111  1112222223  7788888886543 2346888888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.80  E-value=0.01  Score=54.36  Aligned_cols=223  Identities=15%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             cCcEEEEecCC----CeEEEEEccCCceEEe--eeCCCcceeEEEEeCCEEEEEeCC-----CcEEEEEccCCcceeE--
Q psy18018        352 DGVHVVSGSLD----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGTKKLM--  418 (635)
Q Consensus       352 ~~~~l~~~~~d----g~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--  418 (635)
                      ++..++.|+.+    ..+..||..+.+-...  +......-......+.+++.|+.+     ..+..||..+.+....  
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            34556666643    3578888876653221  111111222333446666666654     3577888776542221  


Q ss_pred             -------EEEEeeCCcEEEEEeCCC-----cEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeCC-------Cc
Q psy18018        419 -------FRICLFDGVHVVSGSLDT-----SIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-------ST  477 (635)
Q Consensus       419 -------~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-------g~  477 (635)
                             ......+++.++.|+.++     .+.+||+.+.+-...  +........+...++.+++.|+.+       ..
T Consensus        95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  174 (302)
T 2xn4_A           95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST  174 (302)
T ss_dssp             CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred             CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE
Confidence                   122344777777777653     577888877653322  222222233444567777777643       35


Q ss_pred             EEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCc
Q psy18018        478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP  552 (635)
Q Consensus       478 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (635)
                      +.+||+.+.+-...-..+. ......++..++++++.|+.+     ..+.+||..+.+........   .+        .
T Consensus       175 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~--------r  242 (302)
T 2xn4_A          175 VECYNATTNEWTYIAEMST-RRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN---MC--------R  242 (302)
T ss_dssp             EEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS---SC--------C
T ss_pred             EEEEeCCCCcEEECCCCcc-ccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC---Cc--------c
Confidence            8899998765333211111 222334455688888888765     36889999887644322110   00        0


Q ss_pred             eecccccCCCeEEEEecCCC-----eEEEEeCCCCceEE
Q psy18018        553 LLCPHLQFNSRFVITSSDDG-----TVKLWDVKTGEFIR  586 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~d~-----~v~iwd~~~~~~~~  586 (635)
                      ....+...++++++.|+.++     .+.+||+.+.+...
T Consensus       243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            01111223788888887653     58999999887543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.78  E-value=0.0032  Score=57.84  Aligned_cols=195  Identities=14%  Similarity=0.183  Sum_probs=108.3

Q ss_pred             EeeCCcEEEEEeCC-----CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCCC-----cEEEEECCCCcee
Q psy18018        422 CLFDGVHVVSGSLD-----TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADS-----TVKVWDIVSGQCL  489 (635)
Q Consensus       422 ~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~  489 (635)
                      ...++..++.|+.+     ..+..||..+.+-..  .+........+...++.+++.|+.++     .+.+||+.+.+-.
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            33467777777754     358889988765332  22222222334445777788887653     4788898876533


Q ss_pred             EEecCCCcccccEEEEEecCCEEEEEeCC-------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSRFVITSSDD-------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS  562 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  562 (635)
                      ..-..+ .......+...++++++.|+.+       ..+.+||..+.+....-...   .+        .-...+...++
T Consensus       138 ~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~--------r~~~~~~~~~~  205 (302)
T 2xn4_A          138 HVAPMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS---TR--------RSGAGVGVLNN  205 (302)
T ss_dssp             EECCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS---SC--------CBSCEEEEETT
T ss_pred             ecCCCC-CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc---cc--------cccccEEEECC
Confidence            321111 1222334455678888877643       35889999887644321110   00        00011112278


Q ss_pred             eEEEEecCC-----CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018        563 RFVITSSDD-----GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD  633 (635)
Q Consensus       563 ~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~  633 (635)
                      ++++.|+.+     ..+.+||+.+.+....- .... .... ...+.  .++++++.|+.++. ..-.++.||++.+
T Consensus       206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~-~r~~-~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNM-CRRN-AGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEEEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSS-CCBS-CEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCCEeeCC-CCCC-cccc-CeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            888888764     46999999887654332 2111 1111 11222  36788888887653 1235788887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.76  E-value=0.01  Score=54.15  Aligned_cols=198  Identities=9%  Similarity=0.252  Sum_probs=111.3

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS  431 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~  431 (635)
                      ...+++.....+-+.+||+ +|+.+..+..  +.++.+..-+.+-+ +  .+.+-+                    -+++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l-~--g~~~dl--------------------a~as   92 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPL-N--GKKVDI--------------------AAAS   92 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEE-T--TEEEEE--------------------EEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccccc-C--CceEeE--------------------EEEe
Confidence            4455666667788999999 7888887754  44555544322100 0  000000                    0111


Q ss_pred             EeC--CCcEEEEeC--CCCceeeeecc------CC-ccEEEEEe--c---CC-EEEEEeCCCcEEEEECC-------CCc
Q psy18018        432 GSL--DTSIRVWEA--ESGNLRHTLMG------HQ-SLTSGMEL--R---NN-ILVSGNADSTVKVWDIV-------SGQ  487 (635)
Q Consensus       432 ~~~--d~~i~~~d~--~~~~~~~~~~~------~~-~~v~~~~~--~---~~-~l~s~~~dg~i~iwd~~-------~~~  487 (635)
                      ...  +++|.+|++  .+++ +..+..      .. ..+..+++  +   +. ++++...+|.+..|++.       +.+
T Consensus        93 ~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~  171 (355)
T 3amr_A           93 NRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK  171 (355)
T ss_dssp             ECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred             CCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence            222  355666644  2222 222211      11 23333443  3   33 68888889999999883       345


Q ss_pred             eeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECC-----CCceeeeeccceecCceeEEeccCceecccc--
Q psy18018        488 CLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVK-----TGEFSTPLMSSFILNPFYFLIYSQPLLCPHL--  558 (635)
Q Consensus       488 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--  558 (635)
                      .++++..    .+.+..+..|  ...|+.+-++.-|..++.+     +++.+..+...         .....+..|++  
T Consensus       172 lVR~f~l----gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g---------~l~aDvEGLai~~  238 (355)
T 3amr_A          172 KVRAFKM----NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR---------HLTRDIEGLTIYY  238 (355)
T ss_dssp             EEEEEEC----SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS---------SBCSCEEEEEEEE
T ss_pred             EEEEecC----CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCC---------ccccCcceEEEEe
Confidence            6677764    3456667775  5789999888777777755     22333322111         01234666666  


Q ss_pred             cCCCe-EEEEec-CCCeEEEEeCC-CCceEEeee
Q psy18018        559 QFNSR-FVITSS-DDGTVKLWDVK-TGEFIRNLV  589 (635)
Q Consensus       559 s~~~~-~l~~~~-~d~~v~iwd~~-~~~~~~~~~  589 (635)
                      .++++ ||++++ .++++.+||.+ +.+.+..+.
T Consensus       239 ~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          239 AADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            44554 555544 67899999997 788888875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.72  E-value=0.0046  Score=57.18  Aligned_cols=155  Identities=12%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             EEecCCEEEEEeCC--------CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeC-C-----CcEEEEECC
Q psy18018        462 MELRNNILVSGNAD--------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD-D-----GTVKLWDVK  527 (635)
Q Consensus       462 ~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-d-----~~i~vwd~~  527 (635)
                      ...++.+++.|+.+        ..+.+||+.+.+-.. +...........++..++++++.|+. +     ..+.+||..
T Consensus        95 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           95 GEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             EEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             EEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCC
Confidence            34466677777632        458899998765322 22111122333445568888888876 2     468999998


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC-----eEEEEeCCCCceEEeeeeccCCCCCceEEE
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG-----TVKLWDVKTGEFIRNLVSLDSGGSGGVVWR  602 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~  602 (635)
                      +.+........   .        ......+..-++++++.|+.++     .+.+||+.+.+....- ..+. +. .....
T Consensus       174 ~~~W~~~~~~p---~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~-~r-~~~~~  239 (315)
T 4asc_A          174 KFEWKELAPMQ---T--------ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE-AFPQ-ER-SSLSL  239 (315)
T ss_dssp             TTEEEECCCCS---S--------CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC-CCSS-CC-BSCEE
T ss_pred             CCeEEECCCCC---C--------chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC-CCCC-cc-cceeE
Confidence            87644322110   0        0011111222778888887654     5889999887654432 1111 11 11122


Q ss_pred             EEeCCCCeEEEEccCCC----------eeEeEEEEEeeecC
Q psy18018        603 IRASETKLVCAVGSRNG----------TEETKLLVLDFDVD  633 (635)
Q Consensus       603 l~~s~d~~~l~~~~~dg----------~~~~~l~~~d~~~~  633 (635)
                      +.  -++++++.|+.++          ...-.+|.||++.+
T Consensus       240 ~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          240 VS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            22  2678888888753          23456889988764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00049  Score=63.01  Aligned_cols=199  Identities=10%  Similarity=0.100  Sum_probs=109.7

Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS  431 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~  431 (635)
                      +..+++++.||.|.-+|..+|+.+..++... .++....-...                            ..++..++.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~----------------------------~~~~~~~vv   61 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR----------------------------LETYETLII   61 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCT----------------------------TTSSEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCcc----------------------------ccCCcEEEE
Confidence            6789999999999999999999998887651 11111100000                            001122222


Q ss_pred             E-eCCCcEEEEeCCCCceeeeecc----CCccEEE---EEe-------cCCEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018        432 G-SLDTSIRVWEAESGNLRHTLMG----HQSLTSG---MEL-------RNNILVSGNADSTVKVWDIVSGQCLQTLSGRN  496 (635)
Q Consensus       432 ~-~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~---~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  496 (635)
                      . +.||.+..++..+|.....+..    ..++...   ...       .+..+++|+.+|.+...|+.+|+.+.++....
T Consensus        62 ~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~  141 (339)
T 2be1_A           62 EPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS  141 (339)
T ss_dssp             CCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred             EECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence            2 4677777777766644433321    1122221   001       46688999999999999999999999887522


Q ss_pred             ccc----ccEEEEE-------ecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCc-eecccccCCCeE
Q psy18018        497 KHQ----SAVTCLQ-------FNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP-LLCPHLQFNSRF  564 (635)
Q Consensus       497 ~~~----~~v~~~~-------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~  564 (635)
                      ...    ....|..       -.+..++.+..+..+.+.+ ++|+ ............    ....+ ..+-.++.|+.+
T Consensus       142 ~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~----~~~~~~~~~~~~s~Dg~~  215 (339)
T 2be1_A          142 KNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN----VLDVPLALQNTFSKDGMC  215 (339)
T ss_dssp             BCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECC----TTTHHHHTTCSSCSSSCC
T ss_pred             CcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccc----ccccccccccccccCCcE
Confidence            110    0111111       1245677777777777766 4443 222211000000    00000 011123446777


Q ss_pred             EEEecCCCeEEEEeCCCCceEE
Q psy18018        565 VITSSDDGTVKLWDVKTGEFIR  586 (635)
Q Consensus       565 l~~~~~d~~v~iwd~~~~~~~~  586 (635)
                      ++ ++.||.|.-+|..+|+.+.
T Consensus       216 ~~-~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          216 IA-PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EE-EETTTEEEEECSTTCCEEE
T ss_pred             EE-ECCCCEEEEEECCCCcEEE
Confidence            44 7889999999999998876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.67  E-value=0.03  Score=51.34  Aligned_cols=221  Identities=11%  Similarity=0.186  Sum_probs=124.0

Q ss_pred             cEEEEecC--CCeEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeCC----CcEEEEEccCCcceeEE------
Q psy18018        354 VHVVSGSL--DTSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD----STVKVWDIVSGTKKLMF------  419 (635)
Q Consensus       354 ~~l~~~~~--dg~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~------  419 (635)
                      ..++.|+.  ...+..||..+.+-..  .+.............+.+++.|+.+    ..+..||..+.+.....      
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   92 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR   92 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence            34555554  3568889988765332  1222222333344456666777654    56788888776433221      


Q ss_pred             ---EEEeeCCcEEEEEeCC------CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeC---------CCcEE
Q psy18018        420 ---RICLFDGVHVVSGSLD------TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA---------DSTVK  479 (635)
Q Consensus       420 ---~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~  479 (635)
                         .....+++.++.|+.+      ..+.+||..+.+-...  +........++..++.+++.|+.         -..+.
T Consensus        93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A           93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred             cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence               1234477777777765      4688899887654322  22112222344456777777763         34588


Q ss_pred             EEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCcee
Q psy18018        480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL  554 (635)
Q Consensus       480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  554 (635)
                      +||+.+.+-.. +.........-.++..++++++.|+.+     ..+.+||..+.+....-...  . +      .....
T Consensus       173 ~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~-~------r~~~~  242 (306)
T 3ii7_A          173 VYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP--W-K------GVTVK  242 (306)
T ss_dssp             EEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS--C-C------BSCCE
T ss_pred             EeCCCCCeEEE-CCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC--C-C------cccee
Confidence            99998765332 222111222334455578888887754     35889999887644321110  0 0      00111


Q ss_pred             cccccCCCeEEEEecCC-----CeEEEEeCCCCceEE
Q psy18018        555 CPHLQFNSRFVITSSDD-----GTVKLWDVKTGEFIR  586 (635)
Q Consensus       555 ~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~~~~~  586 (635)
                      ++  .-++++++.|+.+     ..+.+||+.+.+...
T Consensus       243 ~~--~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          243 CA--AVGSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             EE--EETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             EE--EECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            11  1278888888854     568999998876543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.66  E-value=0.0052  Score=57.00  Aligned_cols=141  Identities=14%  Similarity=0.057  Sum_probs=79.1

Q ss_pred             cEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCC-C-cccccEEEEEec---CCEEEEEeC-------------
Q psy18018        458 LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGR-N-KHQSAVTCLQFN---SRFVITSSD-------------  517 (635)
Q Consensus       458 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~~v~~~~~~---~~~l~~~~~-------------  517 (635)
                      ...++.++  ...|+.+...+.+..+|..+++. ..+... . ........++++   |++.++-..             
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            45677776  35666666666688888775532 222210 0 011234556663   444444322             


Q ss_pred             ----CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe-cCCCeEEEEeCCCCc--eEEeeee
Q psy18018        518 ----DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-SDDGTVKLWDVKTGE--FIRNLVS  590 (635)
Q Consensus       518 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~v~iwd~~~~~--~~~~~~~  590 (635)
                          ++.|..||..+++......            .......++++||+++|..+ ..++.|.+|++....  ....+..
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~  227 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLK------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK  227 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEE------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE
T ss_pred             ccCCCceEEEEeCCCCEEEEecc------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe
Confidence                3567778876665322111            11234568999999866555 566899999987531  1222211


Q ss_pred             ccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        591 LDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       591 ~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                           ..+ ...+++.++|.+.++...
T Consensus       228 -----~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          228 -----IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             -----CSS-EEEEEECTTSCEEEEEEE
T ss_pred             -----CCC-CCCeEECCCCCEEEEecC
Confidence                 112 677899999986665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.64  E-value=0.016  Score=50.73  Aligned_cols=190  Identities=11%  Similarity=0.107  Sum_probs=105.5

Q ss_pred             EEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCce---eEEecC---CCccccc
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQC---LQTLSG---RNKHQSA  501 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~---~~~~~~~  501 (635)
                      +...++.|...|.. ++....+.- -....-++++.  +.++++.-.++.+.++++.....   +.....   ....+..
T Consensus        44 V~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g  122 (255)
T 3qqz_A           44 TINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCG  122 (255)
T ss_dssp             EEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSC
T ss_pred             EECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCC
Confidence            34556666677766 666665532 12345566663  33445544667888888765432   222221   1123455


Q ss_pred             EEEEEec--CCEEEEEeCCCcEEEEECCC---CceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecCCCeEE
Q psy18018        502 VTCLQFN--SRFVITSSDDGTVKLWDVKT---GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDDGTVK  575 (635)
Q Consensus       502 v~~~~~~--~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~v~  575 (635)
                      ...++++  ++.|+++.+.....+|.+..   ...............    .+...+.++++.|. +++++....+..+.
T Consensus       123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~----~~~~d~S~l~~dp~tg~lliLS~~s~~L~  198 (255)
T 3qqz_A          123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ----FTLDDVSGAEFNQQKNTLLVLSHESRALQ  198 (255)
T ss_dssp             CEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT----CCSSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             cceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc----cccCCceeEEEcCCCCeEEEEECCCCeEE
Confidence            6888885  55666666655556665541   111111100000000    01235678888884 66777788889999


Q ss_pred             EEeCCCCceEEeeeeccCCCC-----CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGS-----GGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~-----~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ++|.+ |+.+..+. +....+     -..--.|+|.++|++.++ ++-..    +|.|...+
T Consensus       199 ~~d~~-g~~~~~~~-L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~----~y~f~~~~  253 (255)
T 3qqz_A          199 EVTLV-GEVIGEMS-LTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR----FYRFTPQS  253 (255)
T ss_dssp             EECTT-CCEEEEEE-CSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE----EEEEEC--
T ss_pred             EEcCC-CCEEEEEE-cCCccCCcccccCCCCeeEECCCCCEEEE-cCCce----EEEEEecC
Confidence            99966 66555543 322111     135679999999986555 55554    88886543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.053  Score=52.38  Aligned_cols=250  Identities=8%  Similarity=0.035  Sum_probs=122.0

Q ss_pred             CCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC-CcEEEEEccCCccee
Q psy18018        342 HVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD-STVKVWDIVSGTKKL  417 (635)
Q Consensus       342 ~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~~~~~~~  417 (635)
                      ..+..++++| ++..|+++...+.|+.+|+..+.... +.........++++  ++.|+.+... +.+            
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~------------  203 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNND------------  203 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTT------------
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcc------------
Confidence            4556778997 45566666655889999987655433 33334456677775  3434433321 100            


Q ss_pred             EEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee--eeec--cCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLR--HTLM--GHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~--~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                                       ...+..++.. +...  ..+.  .|...+ ++.. ++.++++-..++.|..++...+......
T Consensus       204 -----------------~~~v~~~~~~-g~~~~~~~l~~~~~p~gi-avdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~  264 (430)
T 3tc9_A          204 -----------------RPNNYILTRE-SGFKVITELTKGQNCNGA-ETHPINGELYFNSWNAGQVFRYDFTTQETTPLF  264 (430)
T ss_dssp             -----------------SEEEEEEEGG-GTSCSEEEEEECSSCCCE-EECTTTCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -----------------cceEEEEeCC-CceeeeeeeccCCCceEE-EEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence                             0011111111 1110  1111  122111 2333 3456666667788999998866542222


Q ss_pred             cCCCcccccEEEEEe--cCCE-EEEEeCCCcEEEEECCC--Cce--eeeeccce-ecCceeE----EeccCceecccc--
Q psy18018        493 SGRNKHQSAVTCLQF--NSRF-VITSSDDGTVKLWDVKT--GEF--STPLMSSF-ILNPFYF----LIYSQPLLCPHL--  558 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~-l~~~~~d~~i~vwd~~~--~~~--~~~~~~~~-~~~~~~~----~~~~~~v~~~~~--  558 (635)
                      ...  .......+++  ++++ +++-...+.|..++...  ++.  ...+.... .......    ..+..+--.++.  
T Consensus       265 ~~~--~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~  342 (430)
T 3tc9_A          265 TIQ--DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN  342 (430)
T ss_dssp             ECS--SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred             EcC--CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence            211  1123456777  5774 44555678899987653  221  11111100 0000000    001111113333  


Q ss_pred             ------cCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc---CCC----------CCceEEEEEeCCC-CeEEEEccCC
Q psy18018        559 ------QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD---SGG----------SGGVVWRIRASET-KLVCAVGSRN  618 (635)
Q Consensus       559 ------s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~----------~~~~i~~l~~s~d-~~~l~~~~~d  618 (635)
                            .+++.+.++=...+.|+.++ .+|+..... ...   ..+          .-.....++++|+ |.++++-..+
T Consensus       343 ~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~-g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          343 PAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFA-GRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             GGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEE-ECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEE-eCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence                  24466666666678899998 456543332 110   001          0124789999994 6666655555


Q ss_pred             CeeEeEEEEEeee
Q psy18018        619 GTEETKLLVLDFD  631 (635)
Q Consensus       619 g~~~~~l~~~d~~  631 (635)
                      ..    |..+++|
T Consensus       421 ~r----Ir~i~~e  429 (430)
T 3tc9_A          421 RR----IRKIGYE  429 (430)
T ss_dssp             TE----EEEEEEC
T ss_pred             Ce----EEEEccC
Confidence            54    6667665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.58  E-value=0.0062  Score=56.03  Aligned_cols=181  Identities=9%  Similarity=0.078  Sum_probs=97.7

Q ss_pred             CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018        436 TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN  508 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  508 (635)
                      ..+.+||..+.+-..  .+........+...++.+++.|+.+     ..+.+||+.+.+-...-..+. ....-.++..+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~  168 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVLN  168 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEET
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEEEC
Confidence            356777776654322  1111122233444567777777643     358899988765332211111 22233444557


Q ss_pred             CCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----CeEEEEe
Q psy18018        509 SRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GTVKLWD  578 (635)
Q Consensus       509 ~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd  578 (635)
                      +++++.|+.+     ..+.+||..+.+........   .+       ..-.++ ..-++++++.|+.+     ..+.+||
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~-------r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---TI-------RSGAGV-CVLHNCIYAAGGYDGQDQLNSVERYD  237 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---SC-------CBSCEE-EEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---Cc-------cccceE-EEECCEEEEEeCCCCCCccceEEEEe
Confidence            8888888765     45889998877644321110   00       000011 12278888888765     5699999


Q ss_pred             CCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018        579 VKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD  633 (635)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~  633 (635)
                      +.+.+....- ..+. +. .....+.  -++++++.|+.++. ..-.++.||++.+
T Consensus       238 ~~~~~W~~~~-~~p~-~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          238 VETETWTFVA-PMKH-RR-SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             TTTTEEEECC-CCSS-CC-BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCcEEECC-CCCC-Cc-cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            9988764332 2111 11 1112222  26788888886653 2346888888754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.56  E-value=0.092  Score=53.29  Aligned_cols=183  Identities=7%  Similarity=0.030  Sum_probs=97.3

Q ss_pred             ceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcceeEE-
Q psy18018        345 DLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKLMF-  419 (635)
Q Consensus       345 ~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~-  419 (635)
                      ..+++.+.+..|+ +-...+.|+.++.........+...-....+++++  +. +.++-...+.|.+.++......... 
T Consensus       352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~  431 (619)
T 3s94_A          352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS  431 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEE
Confidence            3456776444444 44457889888887544433343333466788886  44 5555556778888888765332221 


Q ss_pred             --------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEE-eCCCcEEEEECCCC
Q psy18018        420 --------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWDIVSG  486 (635)
Q Consensus       420 --------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~  486 (635)
                              .++.|....|..+..  ...|...++............-...++++++  .+.|..+ ...+.|..+++...
T Consensus       432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence                    124444344444433  2456666654322222222233456677765  4455544 44577888888644


Q ss_pred             ceeEEecCCCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCc
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGE  530 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~  530 (635)
                      .....+.....|..   .++..+.+|+... ..+.|...|..++.
T Consensus       512 ~~~~~~~~~l~~P~---glav~~~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          512 GRRVLVEDKIPHIF---GFTLLGDYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             CCEEEEECCCCSSC---CEEEETTEEEEECTTSSCEEEEESSSCC
T ss_pred             ceEEEeccCCCCcE---EEEEECCEEEEeecCCCeEEEEEcCCCc
Confidence            32222222112332   3445444554443 45667777777763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.53  E-value=0.13  Score=54.21  Aligned_cols=216  Identities=10%  Similarity=0.057  Sum_probs=110.5

Q ss_pred             cceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeE--------------EEEEeeCCcEEEEEeCCCcEEEEeCCCC--
Q psy18018        384 SLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLM--------------FRICLFDGVHVVSGSLDTSIRVWEAESG--  446 (635)
Q Consensus       384 ~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~--------------~~~~~~~~~~l~~~~~d~~i~~~d~~~~--  446 (635)
                      ..|.++..+ ...|..|+ ++-+..++..+++....              ..++......|..|+..+-+..+|..+.  
T Consensus       373 ~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~  451 (758)
T 3ott_A          373 NRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQ  451 (758)
T ss_dssp             SCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHH
T ss_pred             CceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccc
Confidence            357777776 44566666 45788888776543221              1122223345666776666788875421  


Q ss_pred             ---cee---eeec---c-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec-CCEEE
Q psy18018        447 ---NLR---HTLM---G-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVI  513 (635)
Q Consensus       447 ---~~~---~~~~---~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~  513 (635)
                         ...   ..+.   + ....|.++..+  +++.+.++..+-+..+|..+++..............+.++..| ...|.
T Consensus       452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW  531 (758)
T 3ott_A          452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLW  531 (758)
T ss_dssp             CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE
T ss_pred             cCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEE
Confidence               111   1111   1 12357777775  4444433444558889988765443221111123457777774 33444


Q ss_pred             EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC
Q psy18018        514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS  593 (635)
Q Consensus       514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  593 (635)
                      .|+..| +..++..+++... +...    .   + ....|.++... +|++.+ ++.+| +..+|.++.+.. .+. .  
T Consensus       532 igt~~G-l~~~~~~~~~~~~-~~~~----g---l-~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~-~~~-~--  594 (758)
T 3ott_A          532 VGFHGG-VMRINPKDESQQS-ISFG----S---F-SNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDAR-QQN-M--  594 (758)
T ss_dssp             EEETTE-EEEECC--CCCCB-CCCC----C-------CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEE-EC-----
T ss_pred             EEecCc-eEEEecCCCceEE-eccc----C---C-CccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeE-Eec-C--
Confidence            555555 8888877654322 1100    0   0 12346666653 666555 44556 778898876643 221 1  


Q ss_pred             CCCCceEEEEEe-CCCCeEEEEccCCCe
Q psy18018        594 GGSGGVVWRIRA-SETKLVCAVGSRNGT  620 (635)
Q Consensus       594 ~~~~~~i~~l~~-s~d~~~l~~~~~dg~  620 (635)
                        ....+....+ .++|++ ..|+.+|.
T Consensus       595 --~~~~~~~~~~~~~~G~l-~fG~~~Gl  619 (758)
T 3ott_A          595 --TNKRFTSLLFDPKEDCV-YLGGADGF  619 (758)
T ss_dssp             --CCCCCSEEEEETTTTEE-EEECBSEE
T ss_pred             --CCCceeeeEEECCCCcE-EEecCCce
Confidence              1112223333 456654 55777783

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.49  E-value=0.074  Score=50.52  Aligned_cols=218  Identities=7%  Similarity=0.003  Sum_probs=122.0

Q ss_pred             EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCE-EEEEeCCCcEEEEEccCCcceeEE---------EEE
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNI-LVSGNADSTVKVWDIVSGTKKLMF---------RIC  422 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~s~~~dg~i~iwd~~~~~~~~~~---------~~~  422 (635)
                      +|+.+. ...|+.+++.......... ......+++|+  .+. +++-...+.|..+++.........         ..+
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav  166 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV  166 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred             eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence            344333 3568888887655444443 33457888887  344 445456778888888766432221         123


Q ss_pred             eeCCcEE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEE-EEEeCC-CcEEEEECCCCceeEEecCCCc
Q psy18018        423 LFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL-VSGNAD-STVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       423 ~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~d-g~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      .+.+..| ++-...+.|.+.++........+...-....+++++  +..| ++-... +.|..+++...........   
T Consensus       167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---  243 (386)
T 3v65_B          167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---  243 (386)
T ss_dssp             ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---
T ss_pred             EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---
Confidence            4334444 444456678888876443333333333455667665  3444 443344 6788888764333222222   


Q ss_pred             ccccEEEEEec--CCE-EEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        498 HQSAVTCLQFN--SRF-VITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       498 ~~~~v~~~~~~--~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                      .......++++  +.. +++-+..+.|..+++........+..           .......+++ ..+.++++-...+.|
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-----------~~~~P~giav-~~~~ly~td~~~~~V  311 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-----------GLPHPFAITV-FEDSLYWTDWHTKSI  311 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS-----------SCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC-----------CCCCceEEEE-ECCEEEEeeCCCCeE
Confidence            22335667773  444 44545667899999764332211111           0123345666 356677777778899


Q ss_pred             EEEeCCCCceEEeee
Q psy18018        575 KLWDVKTGEFIRNLV  589 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~  589 (635)
                      ..+|..+|+.+..+.
T Consensus       312 ~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          312 NSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEETTTCCSCEEEE
T ss_pred             EEEECCCCcceEEEc
Confidence            999977777665553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.43  E-value=0.095  Score=50.57  Aligned_cols=160  Identities=9%  Similarity=0.025  Sum_probs=85.6

Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEECC--CCcee--eeecc
Q psy18018        465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVK--TGEFS--TPLMS  537 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~--~~~~~--~~~~~  537 (635)
                      ++.++++-..++.|+.+|..++.....+.... ....-..+++  ++++| ++-...+.|+.++..  ++...  ..+..
T Consensus       239 ~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag  317 (433)
T 4hw6_A          239 NGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG  317 (433)
T ss_dssp             TCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred             CCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence            34555565567889999988776523322111 1111234666  57744 444556889998865  33221  11111


Q ss_pred             ceecCce-eEE---eccCceecccc---------cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC-----------
Q psy18018        538 SFILNPF-YFL---IYSQPLLCPHL---------QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS-----------  593 (635)
Q Consensus       538 ~~~~~~~-~~~---~~~~~v~~~~~---------s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------  593 (635)
                      ....... ...   ..-.....+++         .+++.+.++-..++.|+.++. +|+.. .+.....           
T Consensus       318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~  395 (433)
T 4hw6_A          318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGEL  395 (433)
T ss_dssp             CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEET
T ss_pred             cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCcc
Confidence            0000000 000   00112456788         677888877777889999984 56543 3321100           


Q ss_pred             --CCCCceEEEEEeC-CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        594 --GGSGGVVWRIRAS-ETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       594 --~~~~~~i~~l~~s-~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                        ...-.....|+++ ++|.++++-..+..    |..+++|
T Consensus       396 ~~~~~~~~P~giavd~~~g~lyVaD~~n~r----Ir~i~~e  432 (433)
T 4hw6_A          396 RSQALFNHPTSIAYDMKRKCFYIGDCDNHR----VRKIAPE  432 (433)
T ss_dssp             TTTCBCSSEEEEEEETTTTEEEEEEGGGTE----EEEEEEC
T ss_pred             ccccEeCCCcEEEEECCCCEEEEEeCCCCE----EEEEecC
Confidence              0011247899999 67777766666665    6666665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.42  E-value=0.011  Score=62.13  Aligned_cols=178  Identities=10%  Similarity=0.005  Sum_probs=98.7

Q ss_pred             ceEEEE-ecCcEEEEecC-C----CeEEEEEccCC-ceEE-eeeCCCcceeEEEEe--CCEEEEEeCC-----CcEEEEE
Q psy18018        345 DLFGFQ-FDGVHVVSGSL-D----TSIRVWEAESG-NLRH-TLMGHQSLTSGMELR--NNILVSGNAD-----STVKVWD  409 (635)
Q Consensus       345 ~~~~~s-~~~~~l~~~~~-d----g~i~v~~~~~~-~~~~-~~~~~~~~v~~l~~~--~~~l~s~~~d-----g~i~iwd  409 (635)
                      ...++| |||++|+.+.. +    ..|+++|+.++ +.+. .+.   .....++|+  ++.|+....+     ..|..++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            346799 99998875433 2    35999999988 6321 111   113456675  4455555544     2577777


Q ss_pred             ccCCcce--e----------EEEEEeeCCcEEEEEeC---CCcEEEEeCCCCc-ee--eee-ccCCccEEEEE-ecCCEE
Q psy18018        410 IVSGTKK--L----------MFRICLFDGVHVVSGSL---DTSIRVWEAESGN-LR--HTL-MGHQSLTSGME-LRNNIL  469 (635)
Q Consensus       410 ~~~~~~~--~----------~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~-~~~~~~v~~~~-~~~~~l  469 (635)
                      +.++...  .          ....+++||++|+....   ...|.++|+.++. ..  ..+ ........... ..++.|
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            7665321  1          12247899999887663   3468889988752 12  333 33344555555 346654


Q ss_pred             E-EEeCC----CcEEEEECCCCceeEE-ecCCCcccccEEEEEecCC-EEEEEeCCCc--EEEEEC
Q psy18018        470 V-SGNAD----STVKVWDIVSGQCLQT-LSGRNKHQSAVTCLQFNSR-FVITSSDDGT--VKLWDV  526 (635)
Q Consensus       470 ~-s~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~--i~vwd~  526 (635)
                      + ....+    ..|..+++.++..... +... .....+..+.+.++ ++++...++.  |.++++
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            4 44333    2566777764322222 2211 12224566777544 5566666775  455564

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.42  E-value=0.028  Score=51.57  Aligned_cols=224  Identities=13%  Similarity=0.163  Sum_probs=122.8

Q ss_pred             ecCcEEEEecCC----CeEEEEEccCCceEEe--eeCCCcceeEEEEeCCEEEEEeC----C-----CcEEEEEccCCcc
Q psy18018        351 FDGVHVVSGSLD----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA----D-----STVKVWDIVSGTK  415 (635)
Q Consensus       351 ~~~~~l~~~~~d----g~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~~~----d-----g~i~iwd~~~~~~  415 (635)
                      .++..++.|+.+    ..+.+||..+.+-...  +......-......+.+++.|+.    +     ..+.+||+.+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            356666776632    4688899876653322  11111122233334556666654    2     4678888776542


Q ss_pred             eeE---------EEEEeeCCcEEEEEeCC-----CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeCC----
Q psy18018        416 KLM---------FRICLFDGVHVVSGSLD-----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD----  475 (635)
Q Consensus       416 ~~~---------~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d----  475 (635)
                      ...         ......+++.++.|+.+     ..+..||..+.+-...  +......-.+...++.+++.|+.+    
T Consensus       103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  182 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR  182 (308)
T ss_dssp             EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred             eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCc
Confidence            221         11233467777776643     4588889887643322  222222223444567777777754    


Q ss_pred             -CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEec
Q psy18018        476 -STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       476 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  549 (635)
                       ..+.+||+.+.+-.. +...........++..++++++.|+.+     ..+.+||+.+.+........   .       
T Consensus       183 ~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~-------  251 (308)
T 1zgk_A          183 LNSAECYYPERNEWRM-ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK---H-------  251 (308)
T ss_dssp             CCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS---S-------
T ss_pred             CceEEEEeCCCCeEee-CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC---C-------
Confidence             458899988765332 221111222334455588888888765     56899999887644322110   0       


Q ss_pred             cCceecccccCCCeEEEEecCC-----CeEEEEeCCCCceEE
Q psy18018        550 SQPLLCPHLQFNSRFVITSSDD-----GTVKLWDVKTGEFIR  586 (635)
Q Consensus       550 ~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~~~~~  586 (635)
                      . .....+..-++++++.|+.+     ..+.+||+.+.+...
T Consensus       252 ~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          252 R-RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             C-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             C-ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            0 00011112277888888754     468899998876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.42  E-value=0.017  Score=53.29  Aligned_cols=179  Identities=15%  Similarity=0.149  Sum_probs=93.1

Q ss_pred             EEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC-------CcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018        438 IRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD-------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN  508 (635)
Q Consensus       438 i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  508 (635)
                      +..||..+.+-..  .+........+...++.+++.|+.+       ..+.+||+.+.+-...-..+. ....-.++..+
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~  158 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-KVYGHNVISHN  158 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-CEESCEEEEET
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-cccccEEEEEC
Confidence            5566665543322  1111112223344567777777754       347888988765333211111 12223344467


Q ss_pred             CCEEEEEeC------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----CeEEEE
Q psy18018        509 SRFVITSSD------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GTVKLW  577 (635)
Q Consensus       509 ~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~v~iw  577 (635)
                      +++++.|+.      -..+.+||..+.+........   .+  ...|     ++ ..-++++++.|+.+     ..+.+|
T Consensus       159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~--r~~~-----~~-~~~~~~iyv~GG~~~~~~~~~~~~y  227 (318)
T 2woz_A          159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK---TP--RSMF-----GV-AIHKGKIVIAGGVTEDGLSASVEAF  227 (318)
T ss_dssp             TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS---SC--CBSC-----EE-EEETTEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC---CC--cccc-----eE-EEECCEEEEEcCcCCCCccceEEEE
Confidence            888888764      245899999887644321110   00  0001     11 12267888887653     357899


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe----------eEeEEEEEeeecC
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT----------EETKLLVLDFDVD  633 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~----------~~~~l~~~d~~~~  633 (635)
                      |+.+.+....- ..+. +. ... +++ .-++++++.|+.++.          ..-.+|.||++.+
T Consensus       228 d~~~~~W~~~~-~~p~-~r-~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          228 DLKTNKWEVMT-EFPQ-ER-SSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             ETTTCCEEECC-CCSS-CC-BSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             ECCCCeEEECC-CCCC-cc-cce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            99887754322 1111 11 111 222 235788888886541          2345889988754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.39  E-value=0.19  Score=52.88  Aligned_cols=425  Identities=10%  Similarity=0.048  Sum_probs=213.7

Q ss_pred             EEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCC
Q psy18018         84 ITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDY  162 (635)
Q Consensus        84 i~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg  162 (635)
                      |.++... ...|-.|+.+| +..+|..+++.                     ..........|.++..+...|..++.+ 
T Consensus        65 i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f---------------------~~~~~~~~~~i~~i~~~~g~lWigt~~-  121 (758)
T 3ott_A           65 IYCGVIIDNTYLYMGTDNG-ILVYNYRADRY---------------------EQPETDFPTDVRTMALQGDTLWLGALN-  121 (758)
T ss_dssp             EEEEEEETTTEEEEEETTE-EEEEETTTTEE---------------------CCCSCCCCSCEEEEEEETTEEEEEETT-
T ss_pred             EEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE---------------------ECcccCCCceEEEEEecCCcEEEEcCC-
Confidence            3777666 55566666554 66777664421                     110011123466665545567777766 


Q ss_pred             eEEEEeCCCccceeecc----ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCC----CCCeEEEEee-
Q psy18018        163 MVKIWNPDTEECLHAEL----QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL-IGH----TGGVWSSQMA-  232 (635)
Q Consensus       163 ~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h----~~~v~~~~~~-  232 (635)
                      -+..+|..+++......    .....+.......++.|.+++.+ -+..++..+++..... ...    ...|.++..+ 
T Consensus       122 Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  200 (758)
T 3ott_A          122 GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT  200 (758)
T ss_dssp             EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET
T ss_pred             cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC
Confidence            57788887655322100    11122333333445667777765 4778887766543211 111    2247888775 


Q ss_pred             -CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccc
Q psy18018        233 -GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT  311 (635)
Q Consensus       233 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (635)
                       ++.|..|.. +-+..++..+.......              ..                                    
T Consensus       201 ~~~~lWigt~-~Gl~~~~~~~~~~~~~~--------------~l------------------------------------  229 (758)
T 3ott_A          201 TRQCVWIGTE-GYLFQYFPSTGQIKQTE--------------AF------------------------------------  229 (758)
T ss_dssp             TTTEEEEEEE-EEEEEEETTTTEEEEEE--------------EE------------------------------------
T ss_pred             CCCEEEEEEC-CCCeEEcCCCCeEEecc--------------CC------------------------------------
Confidence             455566664 45666775443211000              00                                    


Q ss_pred             ccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee-------CCCc
Q psy18018        312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-------GHQS  384 (635)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-------~~~~  384 (635)
                                                  .......+....+|. |..|+.+ -+.+++..+++......       -...
T Consensus       230 ----------------------------~~~~i~~i~~d~~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~  279 (758)
T 3ott_A          230 ----------------------------HNNSIKSLALDGNGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNN  279 (758)
T ss_dssp             ----------------------------EEEEEEEEEECTTCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCS
T ss_pred             ----------------------------CCCeEEEEEEcCCCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcC
Confidence                                        000011111222343 4555544 47788876654332211       1123


Q ss_pred             ceeEEEEe-CCEEEEEeCCCcEEEEEccCC-------------cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc--e
Q psy18018        385 LTSGMELR-NNILVSGNADSTVKVWDIVSG-------------TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN--L  448 (635)
Q Consensus       385 ~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~  448 (635)
                      .|.++..+ ...|..|+..| +.++.....             .......++......|..|+.+| +..++..+++  .
T Consensus       280 ~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~  357 (758)
T 3ott_A          280 IIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHD  357 (758)
T ss_dssp             CEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCC
T ss_pred             eEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccce
Confidence            57788776 44566666666 544332110             00112222222333455566554 6666655432  1


Q ss_pred             eeeecc-------CCccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEec-CCC--cccccEEEEEec-CCEEEEEe
Q psy18018        449 RHTLMG-------HQSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLS-GRN--KHQSAVTCLQFN-SRFVITSS  516 (635)
Q Consensus       449 ~~~~~~-------~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~--~~~~~v~~~~~~-~~~l~~~~  516 (635)
                      ...+..       ....|.++..+. ..|..|+. +-+..||..+++...-.. ...  .....|.++..+ ...|..|+
T Consensus       358 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT  436 (758)
T 3ott_A          358 AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST  436 (758)
T ss_dssp             CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE
T ss_pred             eEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE
Confidence            111210       123577887753 34555654 569999988765433211 110  023457888875 45677777


Q ss_pred             CCCcEEEEECCCC-----ceee---eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018        517 DDGTVKLWDVKTG-----EFST---PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       517 ~d~~i~vwd~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      ..+-|.++|.++.     ....   .+...   ..    .....|.++...++|++.+.++..+-+..+|..+++... +
T Consensus       437 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~---~~----l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-~  508 (758)
T 3ott_A          437 CLGGIFVVDKHKLMQSTSGQYIAEQNYSVH---NG----LSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-L  508 (758)
T ss_dssp             SSSCEEEEEHHHHHHCCSSEEECSEEECGG---GT----CSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-E
T ss_pred             CCCceEEEccccccccCCcceecccccccc---cc----cccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-e
Confidence            6666888885431     1110   00000   00    012357888888889877643334458889988776443 3


Q ss_pred             eeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        589 VSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       589 ~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      .. ........+.++....+|.+-+.. .+|     |+.+|++
T Consensus       509 ~~-~~~~~~~~~~~i~~d~~g~lWigt-~~G-----l~~~~~~  544 (758)
T 3ott_A          509 FA-DELTGEKSPNYLLCDEDGLLWVGF-HGG-----VMRINPK  544 (758)
T ss_dssp             CT-TTSCGGGCEEEEEECTTSCEEEEE-TTE-----EEEECC-
T ss_pred             cC-CCcCCCcccceEEECCCCCEEEEe-cCc-----eEEEecC
Confidence            11 111123568888888888866543 456     6666654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.02  Score=55.49  Aligned_cols=161  Identities=14%  Similarity=0.215  Sum_probs=92.1

Q ss_pred             EEEEEecC---C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe---------cCCEEEEEeCCC------
Q psy18018        459 TSGMELRN---N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---------NSRFVITSSDDG------  519 (635)
Q Consensus       459 v~~~~~~~---~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~l~~~~~d~------  519 (635)
                      ...|++++   + ++++-...+.|++.|+.++..................+++         ++++|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            44566664   2 4455444577999999877665544432222335777887         477666665543      


Q ss_pred             -cEEEEECCC-CceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCC-------CCce-----
Q psy18018        520 -TVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVK-------TGEF-----  584 (635)
Q Consensus       520 -~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~-------~~~~-----  584 (635)
                       .+.+++... +........    ..+  ... .....++++| ++.++++-..++.|..+|+.       +++.     
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~----~~v--~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDI----QLI--AAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCE----EEE--EEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             ceEEEEecCCCCceeecccc----eee--ccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence             256666443 222100000    000  012 2445788899 45666666788899999998       5553     


Q ss_pred             ------EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        585 ------IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       585 ------~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                            +..+...   +.......|+|+|+|++|.++.....   +|+.+|++.
T Consensus       294 ~~~~g~~~~l~~~---~~~~~p~~ia~~p~G~~lYvaD~~~h---~I~kid~dg  341 (496)
T 3kya_A          294 KNNPNTFKQLFTI---ADPSWEFQIFIHPTGKYAYFGVINNH---YFMRSDYDE  341 (496)
T ss_dssp             GGCTTTEEEEEEC---SSSSCCEEEEECTTSSEEEEEETTTT---EEEEEEEET
T ss_pred             cccccccceeEec---CCCCCceEEEEcCCCCEEEEEeCCCC---EEEEEecCC
Confidence                  2232211   22345679999999996666654443   477766654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.017  Score=52.97  Aligned_cols=176  Identities=13%  Similarity=0.108  Sum_probs=97.9

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCC--ceEEeeeCCCcceeEEEEeCCEEEEE--eCCCcEEEEEccCCcceeEEEE--
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELRNNILVSG--NADSTVKVWDIVSGTKKLMFRI--  421 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~v~~l~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~--  421 (635)
                      .-+.||...+.-..+|.+ +|.....  ............      .+..++.+  +.||.+..++..++........  
T Consensus        15 v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           15 AADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             EEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            345588877777777754 6887765  222222222211      22233333  5788888888776643322221  


Q ss_pred             ------Ee-------------eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc-c------EEEEE-------ecCCE
Q psy18018        422 ------CL-------------FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-L------TSGME-------LRNNI  468 (635)
Q Consensus       422 ------~~-------------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~------v~~~~-------~~~~~  468 (635)
                            +.             ..+..+++|+.++.+...|+.+|+.+.++..... .      ..|..       ..++.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence                  11             1567889999999999999999999998864321 0      11111       12456


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecC----CCcccccEE---EEEecCCEEEEEeCCCcEEEEECCCCceee
Q psy18018        469 LVSGNADSTVKVWDIVSGQCLQTLSG----RNKHQSAVT---CLQFNSRFVITSSDDGTVKLWDVKTGEFST  533 (635)
Q Consensus       469 l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~---~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  533 (635)
                      ++.+..+..+.+.+ ++++ +..+..    .......+.   .+..|+.+ +.++.||.|.-+|..+|+.+.
T Consensus       168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777777766 4443 222110    000000000   00113455 557889999999998888665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.019  Score=55.55  Aligned_cols=151  Identities=16%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             EEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeC-CC----cEEEEECCCC
Q psy18018        460 SGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSD-DG----TVKLWDVKTG  529 (635)
Q Consensus       460 ~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~----~i~vwd~~~~  529 (635)
                      ..++++   +..|.++...+.|+.+|+..+.......    .......+++  ++++|+.+.. ++    .+..++ ..+
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g  214 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES  214 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence            345555   2455555555889999988765443333    3344667777  4775555553 22    233333 333


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      .....          ...........++++| ++.++++-..++.|..++..+++..... ..   +.......++|+|+
T Consensus       215 ~~~~~----------~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-~~---~~~~~P~gia~~pd  280 (430)
T 3tc9_A          215 GFKVI----------TELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-TI---QDSGWEFHIQFHPS  280 (430)
T ss_dssp             TSCSE----------EEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-EC---SSSSCCEEEEECTT
T ss_pred             ceeee----------eeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-Ec---CCCCcceeEEEcCC
Confidence            22210          0011123456788999 7777777777889999999876642222 11   12244678999999


Q ss_pred             CeEEEEccCCCeeEeEEEEEeeec
Q psy18018        609 KLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |++|.++.....   +|+.+|.+.
T Consensus       281 G~~lyv~d~~~~---~I~~~~~d~  301 (430)
T 3tc9_A          281 GNYAYIVVVNQH---YILRSDYDW  301 (430)
T ss_dssp             SSEEEEEETTTT---EEEEEEEET
T ss_pred             CCEEEEEECCCC---EEEEEeCCc
Confidence            996666554432   366666653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.30  E-value=0.013  Score=61.43  Aligned_cols=190  Identities=12%  Similarity=0.031  Sum_probs=100.3

Q ss_pred             EEEe-eCCcEEEEEeC-C----CcEEEEeCCCC-ceee-eeccCCccEEEEEe--cCCEEEEEeCC-----CcEEEEECC
Q psy18018        420 RICL-FDGVHVVSGSL-D----TSIRVWEAESG-NLRH-TLMGHQSLTSGMEL--RNNILVSGNAD-----STVKVWDIV  484 (635)
Q Consensus       420 ~~~~-~~~~~l~~~~~-d----~~i~~~d~~~~-~~~~-~~~~~~~~v~~~~~--~~~~l~s~~~d-----g~i~iwd~~  484 (635)
                      ..++ |||++|+.+.. +    ..|+++|+.++ +.+. .+..   ....+.|  +++.|+....|     ..|+.+++.
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            3568 88888776543 2    25999999988 6321 1111   1123444  56666655554     258888887


Q ss_pred             CCce--eEEecCCCcccccEEEEEe--cCCEEEEEeC---CCcEEEEECCCCce-e--eeeccceecCceeEEeccCcee
Q psy18018        485 SGQC--LQTLSGRNKHQSAVTCLQF--NSRFVITSSD---DGTVKLWDVKTGEF-S--TPLMSSFILNPFYFLIYSQPLL  554 (635)
Q Consensus       485 ~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---d~~i~vwd~~~~~~-~--~~~~~~~~~~~~~~~~~~~~v~  554 (635)
                      ++..  ...+...  .......+.+  |+++|+..+.   ...|+++|+.++.. .  ..+...          ......
T Consensus       256 t~~~~~~lv~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~----------~~~~~~  323 (751)
T 2xe4_A          256 KLQSEDVCLYEEH--NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR----------EKGVRY  323 (751)
T ss_dssp             SCGGGCEEEEECC--CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC----------CTTCCE
T ss_pred             CCchhcEEEEecC--CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC----------CCCceE
Confidence            7642  1222211  1223344555  7888876653   34688889887521 1  112111          112222


Q ss_pred             cccccCCCeEEEEecCC----CeEEEEeCCCCceEEe-eeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        555 CPHLQFNSRFVITSSDD----GTVKLWDVKTGEFIRN-LVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       555 ~~~~s~~~~~l~~~~~d----~~v~iwd~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      ++.|+.++.+++....+    ..|..+|+.++..... +.   .......+..+.+. .+.++++...+|.  .+|+.+|
T Consensus       324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li---~~~~~~~l~~~~~~-~~~lv~~~~~~g~--~~l~~~d  397 (751)
T 2xe4_A          324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV---DHSEDVFMESIAVR-SNYLVVAGRRAGL--TRIWTMM  397 (751)
T ss_dssp             EEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE---CCCSSEEEEEEEEC-SSEEEEEEEETTE--EEEEEEE
T ss_pred             EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE---CCCCCcEEEEEEEE-CCEEEEEEEeCCE--EEEEEEe
Confidence            23333344444544443    3677778765321112 21   11223356677776 3567777778887  6777777


Q ss_pred             e
Q psy18018        630 F  630 (635)
Q Consensus       630 ~  630 (635)
                      +
T Consensus       398 l  398 (751)
T 2xe4_A          398 A  398 (751)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.26  E-value=0.029  Score=52.81  Aligned_cols=144  Identities=8%  Similarity=0.004  Sum_probs=70.7

Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeC------CCcEEEEEC--CCCceeeeeccceecCceeEE
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD------DGTVKLWDV--KTGEFSTPLMSSFILNPFYFL  547 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~  547 (635)
                      ..+.+||+.+.+-...-..+........++..++++++.|+.      ...+.+||+  .+.+.......   ..+    
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~---~~~----  240 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV---SSP----  240 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS---STT----
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC---CCC----
Confidence            578999998765333222111112223444457777777764      245777877  44332221110   000    


Q ss_pred             eccCceecccccCCCeEEEEecCC----------------------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018        548 IYSQPLLCPHLQFNSRFVITSSDD----------------------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       548 ~~~~~v~~~~~s~~~~~l~~~~~d----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                        .....+.+...++++++.|+.+                      ..+.+||+.+.+.... ...+. +... -.+  .
T Consensus       241 --~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~-~r~~-~~~--~  313 (357)
T 2uvk_A          241 --DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-GELSQ-GRAY-GVS--L  313 (357)
T ss_dssp             --TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-EECSS-CCBS-SEE--E
T ss_pred             --cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-CCCCC-Cccc-cee--E
Confidence              0011111233477888888732                      2578999987765432 22211 1111 112  2


Q ss_pred             CCCCeEEEEccCCCe--eEeEEEEEeeecC
Q psy18018        606 SETKLVCAVGSRNGT--EETKLLVLDFDVD  633 (635)
Q Consensus       606 s~d~~~l~~~~~dg~--~~~~l~~~d~~~~  633 (635)
                      ..++++++.|+.++.  ..-.++.++++.+
T Consensus       314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~  343 (357)
T 2uvk_A          314 PWNNSLLIIGGETAGGKAVTDSVLITVKDN  343 (357)
T ss_dssp             EETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred             EeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence            347888888986653  2356888888765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.26  E-value=0.14  Score=48.63  Aligned_cols=93  Identities=4%  Similarity=-0.153  Sum_probs=49.8

Q ss_pred             CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE-eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee---CCE
Q psy18018        160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG-SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA---GNI  235 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~  235 (635)
                      ....|+..++.....................+.++.|+.. ...+.|..+++..+.....+.........++++   +.+
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred             cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence            4467888888765543332222223333333345555544 456788889987665444333222334455554   334


Q ss_pred             EEEeeCceeEEEecccc
Q psy18018        236 IISGSTDRTLKGWSNAE  252 (635)
Q Consensus       236 l~s~~~dg~i~~w~~~~  252 (635)
                      .++-...+.|.+.+++.
T Consensus       174 Y~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             EEEETTTTEEEECBTTS
T ss_pred             EEEcCCCCeEEEEeCCC
Confidence            45555566777776553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.23  E-value=0.23  Score=50.52  Aligned_cols=148  Identities=12%  Similarity=0.058  Sum_probs=79.6

Q ss_pred             cEEEEEec--CC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec---CCEEEEEeCCC--cEEEEECCCC
Q psy18018        458 LTSGMELR--NN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDG--TVKLWDVKTG  529 (635)
Q Consensus       458 ~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~--~i~vwd~~~~  529 (635)
                      ...+++++  ++ +.++-+..+.|.+.++. ++....+...  .......++++   |.++++-....  .|...++. |
T Consensus       390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~--~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G  465 (628)
T 4a0p_A          390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKG--EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-G  465 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEEC--TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-S
T ss_pred             CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeC--CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-C
Confidence            45566664  34 66676778889999986 4444443221  23456777774   44444433222  45555554 3


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCeEEEEe-cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      .....+...          .-...+.++++++.+.|..+ +..+.|...|+. |+....+..    .......+|+... 
T Consensus       466 ~~~~~l~~~----------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~----~~~~~P~glav~~-  529 (628)
T 4a0p_A          466 TEREVLFFS----------GLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLED----SNILQPVGLTVFE-  529 (628)
T ss_dssp             CSCEEEECS----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC----SSCSCEEEEEEET-
T ss_pred             CCcEEEEec----------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEc----CCCCCcEEEEEEC-
Confidence            222222110          12245778899876555555 456889999985 444444421    2223456777755 


Q ss_pred             CeEEEEccCCCeeEeEEEEEe
Q psy18018        609 KLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      +.+..+-.....    |+.+|
T Consensus       530 ~~ly~tD~~~~~----i~~~~  546 (628)
T 4a0p_A          530 NWLYWIDKQQQM----IEKID  546 (628)
T ss_dssp             TEEEEEETTTTE----EEEEE
T ss_pred             CEEEEEECCCCe----EEEEE
Confidence            444444444443    55554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.21  E-value=0.14  Score=47.72  Aligned_cols=217  Identities=8%  Similarity=0.043  Sum_probs=120.5

Q ss_pred             EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEccCCcceeEE---------EEE
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIVSGTKKLMF---------RIC  422 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~---------~~~  422 (635)
                      +|+.+. ...|+..++........+. ......+++++  .+.|+ +-...+.|..+++.........         ..+
T Consensus        46 ~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav  123 (349)
T 3v64_C           46 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV  123 (349)
T ss_dssp             EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEE
Confidence            344333 3458888877555443333 33457888887  34444 4456778888888765433221         123


Q ss_pred             eeCCcEE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CC-EEEEEeCC-CcEEEEECCCCceeEEecCCCc
Q psy18018        423 LFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNAD-STVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       423 ~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      .+.+..| ++-...+.|.+.++........+...-....+++++  +. ++++-... +.|..+++.... ...+...  
T Consensus       124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~--  200 (349)
T 3v64_C          124 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADT--  200 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCS--
T ss_pred             ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEEC--
Confidence            4434444 444456788888887544333333333445667765  34 44444444 778888876433 2333210  


Q ss_pred             ccccEEEEEec--CCEEE-EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018        498 HQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV  574 (635)
Q Consensus       498 ~~~~v~~~~~~--~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v  574 (635)
                      .......+++|  +..|+ +-...+.|..+++........+...           ......+++ ..+.+.++-...+.|
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-----------~~~P~giav-~~~~ly~td~~~~~V  268 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----------LPHPFAITV-FEDSLYWTDWHTKSI  268 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----------CSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-----------CCCceEEEE-ECCEEEEecCCCCeE
Confidence            22345667774  45444 4445678999998743322111110           123345666 356666766677889


Q ss_pred             EEEeCCCCceEEee
Q psy18018        575 KLWDVKTGEFIRNL  588 (635)
Q Consensus       575 ~iwd~~~~~~~~~~  588 (635)
                      ..++..+|+.+..+
T Consensus       269 ~~~~~~~G~~~~~i  282 (349)
T 3v64_C          269 NSANKFTGKNQEII  282 (349)
T ss_dssp             EEEETTTCCSCEEE
T ss_pred             EEEEccCCCccEEe
Confidence            88887677655554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.19  E-value=0.15  Score=47.62  Aligned_cols=184  Identities=5%  Similarity=-0.023  Sum_probs=99.0

Q ss_pred             EeeCCcEEEEE-eCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018        422 CLFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       422 ~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      +.+.+..|... ...+.|..+++........+........+++++  + +++++-...+.|.+.++........+..   
T Consensus        80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---  156 (349)
T 3v64_C           80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---  156 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---
T ss_pred             EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---
Confidence            34444444444 456788888887655433333222233445553  3 4556666678899999875433332322   


Q ss_pred             ccccEEEEEec--CCEE-EEEeCC-CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE-ecCCC
Q psy18018        498 HQSAVTCLQFN--SRFV-ITSSDD-GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT-SSDDG  572 (635)
Q Consensus       498 ~~~~v~~~~~~--~~~l-~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~  572 (635)
                      .......++++  +..| ++-... +.|..+++..... ..+...          .-...+.++++|++..|.. -...+
T Consensus       157 ~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~----------~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          157 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADT----------HLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCS----------SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEEC----------CCCCcceEEEeCCCCEEEEEECCCC
Confidence            22345667774  4444 444444 7788888764322 222110          1223577999986655544 45567


Q ss_pred             eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      .|..+|+..... ..+.    .........|++. ++.+..+-...+.    |+.+|
T Consensus       226 ~I~~~~~dG~~~-~~~~----~~~~~~P~giav~-~~~ly~td~~~~~----V~~~~  272 (349)
T 3v64_C          226 VIERANLDGSHR-KAVI----SQGLPHPFAITVF-EDSLYWTDWHTKS----INSAN  272 (349)
T ss_dssp             EEEEEETTSCSC-EEEE----CSSCSSEEEEEEE-TTEEEEEETTTTE----EEEEE
T ss_pred             EEEEEeCCCCce-EEEE----eCCCCCceEEEEE-CCEEEEecCCCCe----EEEEE
Confidence            899999875433 2221    1123345677773 4455555445554    55554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.19  E-value=0.022  Score=52.21  Aligned_cols=156  Identities=10%  Similarity=-0.013  Sum_probs=78.1

Q ss_pred             cEEEEEe--cCCEEEEEeCCC--cEEEEECCCCceeEEecCCCcccccEEEEE-ecCCE-EEEEeCCCcEEEEECCCCce
Q psy18018        458 LTSGMEL--RNNILVSGNADS--TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ-FNSRF-VITSSDDGTVKLWDVKTGEF  531 (635)
Q Consensus       458 ~v~~~~~--~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-l~~~~~d~~i~vwd~~~~~~  531 (635)
                      ...++.+  +++++++.....  .|..+|..+++........  .......++ +.+.. +++-..++.|.++|..+++.
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT--TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC--CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            4566666  455555543322  4777777777654332211  111122333 33444 44444588899999875421


Q ss_pred             -eeeecccee-cCceeEEeccCceecccccCCCeEEE-EecCCCeEEEEeCCC-Cce--EEeeeeccCCCCCceEEEEEe
Q psy18018        532 -STPLMSSFI-LNPFYFLIYSQPLLCPHLQFNSRFVI-TSSDDGTVKLWDVKT-GEF--IRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       532 -~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~v~iwd~~~-~~~--~~~~~~~~~~~~~~~i~~l~~  605 (635)
                       +........ .....   .-...+.+  +||+++|. +-...+.|..+|+.. ++.  ...+..      ......|++
T Consensus       151 ~v~~~~~~~~~~~~~~---~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~gi~v  219 (306)
T 2p4o_A          151 SIWLEHPMLARSNSES---VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNIDDFAF  219 (306)
T ss_dssp             EEEEECGGGSCSSTTC---CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCSSEEE
T ss_pred             eEEEECCccccccccC---CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCCCeEE
Confidence             110000000 00000   00122334  78886554 445678999999875 331  111111      123456888


Q ss_pred             CCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        606 SETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       606 s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +++|++.++...++.    |..+|.
T Consensus       220 d~dG~l~va~~~~~~----V~~~~~  240 (306)
T 2p4o_A          220 DVEGNLYGATHIYNS----VVRIAP  240 (306)
T ss_dssp             BTTCCEEEECBTTCC----EEEECT
T ss_pred             CCCCCEEEEeCCCCe----EEEECC
Confidence            999987776666665    555654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.19  E-value=0.15  Score=47.67  Aligned_cols=232  Identities=12%  Similarity=0.136  Sum_probs=125.6

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEE-eCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV  427 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  427 (635)
                      .+|..+.++.-. ...+.+||+++.+.++.+.-.+ .|....| +++.|+..+. ..|.-|++....             
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~-taVyHWsi~~~s-------------  136 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGES-------------  136 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECS-SEEEEEESSSSC-------------
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcC-CeeEEecccCCC-------------
Confidence            566666666554 6789999999988888777654 4555555 4565555543 356777765311             


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEe-------CCCcEEEEECCCCceeEEecCCCcc
Q psy18018        428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN-------ADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                              .-++++|.... +    .  ...|.....+  .++++..+       -.|.+.+|..+.+ ..+.+.+   |
T Consensus       137 --------~P~kvFdR~~~-L----~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG---h  197 (494)
T 1bpo_A          137 --------QPVKMFDRHSS-L----A--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG---H  197 (494)
T ss_dssp             --------CCEEEEECCGG-G----T--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECC---S
T ss_pred             --------Cchhheecchh-c----c--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhee---e
Confidence                    11223322110 0    0  1122222222  22222211       1377899998753 4455665   5


Q ss_pred             cccEEEEEecC-----CEEEEEeCC---CcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        499 QSAVTCLQFNS-----RFVITSSDD---GTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       499 ~~~v~~~~~~~-----~~l~~~~~d---~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      ...-..+..+|     ..++.+...   +.+++-++... .....+......-.+....-.+--.++..|+.-..+..-+
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT  277 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence            55544454443     234444432   78999988543 1111111100000000001123345677888888888889


Q ss_pred             CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      .-|.+.+||++++.++..-+     -...+|..-+...+..=++.....|.
T Consensus       278 K~G~i~lyDleTgt~i~~nr-----Is~~~iF~t~~~~~~~Gi~~Vnr~Gq  323 (494)
T 1bpo_A          278 KYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQ  323 (494)
T ss_dssp             TTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTCE
T ss_pred             cCceEEEEecccceeeeeec-----ccCCceEEecccCCCCcEEEEccCce
Confidence            99999999999999987764     34455665555444333344446665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.18  E-value=0.14  Score=47.04  Aligned_cols=219  Identities=9%  Similarity=0.071  Sum_probs=119.6

Q ss_pred             EEEEecCCCeEEEEEccCCceEE-eeeCC--CcceeEEEEeCCEEEEEeC-----C--C----cEEEEEccCCccee---
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRH-TLMGH--QSLTSGMELRNNILVSGNA-----D--S----TVKVWDIVSGTKKL---  417 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~-~~~~~--~~~v~~l~~~~~~l~s~~~-----d--g----~i~iwd~~~~~~~~---  417 (635)
                      .++.|+  ..+..||..+++-.. .+...  ..........+.+++.|+.     .  .    .+..||..+.+-..   
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  568999998776432 12111  1122222234667777763     1  1    26677776654211   


Q ss_pred             ------EEEEEeeCCcEEEEEeCC--------CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeC-C-----
Q psy18018        418 ------MFRICLFDGVHVVSGSLD--------TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNA-D-----  475 (635)
Q Consensus       418 ------~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~-d-----  475 (635)
                            .......+++.++.|+.+        ..+.+||..+.+-..  .+........++..++.+++.|+. +     
T Consensus        85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  164 (315)
T 4asc_A           85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL  164 (315)
T ss_dssp             BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred             CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence                  112234467777777642        458889988764322  222222233344567777778776 2     


Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC-----cEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG-----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  550 (635)
                      ..+.+||+.+.+-.. +...........++..++++++.|+.++     .+.+||..+.+........   .       .
T Consensus       165 ~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~-------~  233 (315)
T 4asc_A          165 NKMCVYDPKKFEWKE-LAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP---Q-------E  233 (315)
T ss_dssp             CCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS---S-------C
T ss_pred             ceEEEEeCCCCeEEE-CCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC---C-------c
Confidence            468999988764322 2211112223344556888888888654     4888999887544322110   0       0


Q ss_pred             CceecccccCCCeEEEEecCC--------------CeEEEEeCCCCceEEe
Q psy18018        551 QPLLCPHLQFNSRFVITSSDD--------------GTVKLWDVKTGEFIRN  587 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d--------------~~v~iwd~~~~~~~~~  587 (635)
                       .....+..-++++++.|+.+              ..+.+||+++.+....
T Consensus       234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence             00111122367888888764              2477899988776544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.16  E-value=0.056  Score=52.19  Aligned_cols=152  Identities=14%  Similarity=0.122  Sum_probs=87.3

Q ss_pred             EEEEEecC----CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC----c-EEEEECC
Q psy18018        459 TSGMELRN----NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG----T-VKLWDVK  527 (635)
Q Consensus       459 v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~-i~vwd~~  527 (635)
                      ..++++++    ..|..+...+.|+.+|+.+++......    .......+++  +++ |+.+...+    . +...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            34666663    455555544889999998776554433    3344667777  467 44444321    1 2222221


Q ss_pred             CCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                       +.....          ...........++++| ++.+.++-..++.|+.+|..+++....+...   +....-..++|+
T Consensus       216 -~~~~~~----------~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~---~~~~~~~~ia~d  281 (433)
T 4hw6_A          216 -SGFTER----------LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM---DTKGSNFHIVWH  281 (433)
T ss_dssp             -GTTCCE----------EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC---SCCSSCEEEEEC
T ss_pred             -CCeecc----------ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc---CCCCCcccEEEe
Confidence             111100          0111233457789999 7777766667889999999888763443222   112223479999


Q ss_pred             CCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        607 ETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |+|++|.++.....   +|+.+|++.
T Consensus       282 pdG~~LYvad~~~~---~I~~~~~d~  304 (433)
T 4hw6_A          282 PTGDWAYIIYNGKH---CIYRVDYNR  304 (433)
T ss_dssp             TTSSEEEEEETTTT---EEEEEEBCT
T ss_pred             CCCCEEEEEeCCCC---EEEEEeCCC
Confidence            99996665555432   477777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.14  E-value=0.028  Score=50.78  Aligned_cols=166  Identities=7%  Similarity=0.041  Sum_probs=98.5

Q ss_pred             EEEEecC--CEEEEEe-CCCcEEEEECCCCceeEE-ecCC---CcccccEEEEEe---c--CCEEEEEe-----------
Q psy18018        460 SGMELRN--NILVSGN-ADSTVKVWDIVSGQCLQT-LSGR---NKHQSAVTCLQF---N--SRFVITSS-----------  516 (635)
Q Consensus       460 ~~~~~~~--~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~---~~~~~~v~~~~~---~--~~~l~~~~-----------  516 (635)
                      .+..|+.  ..+..++ ..++|..||...+..... +...   ......+..+.+   |  ++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3566753  4444444 789999999975543332 2210   011224577888   4  45555443           


Q ss_pred             --CCCcEEEEECC---CCceeeeeccceecCc---eeEEeccCceecccccCCCeEEEEecCC-CeEEEEeCCCCceEEe
Q psy18018        517 --DDGTVKLWDVK---TGEFSTPLMSSFILNP---FYFLIYSQPLLCPHLQFNSRFVITSSDD-GTVKLWDVKTGEFIRN  587 (635)
Q Consensus       517 --~d~~i~vwd~~---~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~v~iwd~~~~~~~~~  587 (635)
                        .+..|..||+.   +++.+...........   ... .-......++..++|+..++++.. +.|...+.. |+.+..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g-~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAG-KRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHS-SCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccc-ccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEee
Confidence              26779999999   7776544332100000   000 001246788999999999988888 887777755 333333


Q ss_pred             eeecc-CCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        588 LVSLD-SGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       588 ~~~~~-~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +.... .....-....+++.|||.+|++....|.    |+.+|..
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~----L~~fD~~  214 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA----LTAFDVS  214 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS----EEEEECS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCe----EEEEcCC
Confidence            32111 1112234668899999998888877776    8888865

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.13  E-value=0.02  Score=50.06  Aligned_cols=172  Identities=10%  Similarity=0.076  Sum_probs=101.0

Q ss_pred             eeccCCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018        451 TLMGHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       451 ~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd  525 (635)
                      .+.+-...+.++++++  + ++++...++.|...|.. ++.++.+...  .....-.+++  ++.++++.-.++.+.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--FVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--SCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--CCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            4556666788999863  3 56667888999999998 8888877531  1234566666  455556655678899999


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC---CCceEEeeee--ccCCCCCceE
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK---TGEFIRNLVS--LDSGGSGGVV  600 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~---~~~~~~~~~~--~~~~~~~~~i  600 (635)
                      +.....+.......  -+......+.....++++|+++.|.++.+.....||.+.   ....+..+..  +........+
T Consensus        98 v~~~~~i~~~~~~~--~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           98 LTPNSEVKILKKIK--IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             ECTTCCEEEEEEEE--CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             cCCCCeeeeeeeec--cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            87655322111110  011011235567899999998777777666555666654   1111111110  0001123346


Q ss_pred             EEEEeCCCC-eEEEEccCCCeeEeEEEEEeee
Q psy18018        601 WRIRASETK-LVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       601 ~~l~~s~d~-~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      .++++.|.. ++++...++..    |..+|.+
T Consensus       176 S~l~~dp~tg~lliLS~~s~~----L~~~d~~  203 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRA----LQEVTLV  203 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTE----EEEECTT
T ss_pred             eeEEEcCCCCeEEEEECCCCe----EEEEcCC
Confidence            888998864 45555555544    7777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.05  E-value=0.15  Score=47.01  Aligned_cols=220  Identities=12%  Similarity=0.103  Sum_probs=117.3

Q ss_pred             cEEEEecCCCeEEEEEccCCceEEe-eeC--CCcceeEEEEeCCEEEEEeC----CC-------cEEEEEccCCccee--
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLRHT-LMG--HQSLTSGMELRNNILVSGNA----DS-------TVKVWDIVSGTKKL--  417 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~~~-~~~--~~~~v~~l~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~--  417 (635)
                      ..++.|+.  .+..||..+.+-... ...  .......+...+.+++.|+.    ++       .+..||..+.+-..  
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            44555553  488999887764331 111  11112222234667777763    12       16677776543221  


Q ss_pred             -------EEEEEeeCCcEEEEEeCC-------CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeC------C
Q psy18018        418 -------MFRICLFDGVHVVSGSLD-------TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA------D  475 (635)
Q Consensus       418 -------~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~------d  475 (635)
                             .......+++.++.|+.+       ..+.+||..+.+-...  +......-.++..++.+++.|+.      -
T Consensus        95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  174 (318)
T 2woz_A           95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT  174 (318)
T ss_dssp             CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred             CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence                   112234467777777754       3578888887654322  11111122233456777777764      2


Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  550 (635)
                      ..+.+||+.+.+-...-..+ .......++..++++++.|+.+     ..+.+||..+.+....-...   .+       
T Consensus       175 ~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~-------  243 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP---QE-------  243 (318)
T ss_dssp             CCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS---SC-------
T ss_pred             ceEEEEcCCCCEEEECCCCC-CCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC---Cc-------
Confidence            45899999876533221111 1222234455688888888754     34778998887644321110   00       


Q ss_pred             CceecccccCCCeEEEEecCC--------------CeEEEEeCCCCceEEe
Q psy18018        551 QPLLCPHLQFNSRFVITSSDD--------------GTVKLWDVKTGEFIRN  587 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d--------------~~v~iwd~~~~~~~~~  587 (635)
                       .....+...++++++.|+.+              ..+.+||+.+.+....
T Consensus       244 -r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          244 -RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             -CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             -ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence             00111122367888887754              3588899988876554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.05  E-value=0.19  Score=46.13  Aligned_cols=108  Identities=8%  Similarity=0.013  Sum_probs=56.8

Q ss_pred             ceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceee-ccc--cceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy18018        144 AVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHA-ELQ--ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR  217 (635)
Q Consensus       144 ~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  217 (635)
                      ...++.|   ++...++-...+.|..+++........ ...  ..+.-....+..+..+++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            4567788   345555656678899999877632111 111  1111122222233444555566788888876543322


Q ss_pred             EEeCCCCCeEEEEee--CCEEEEee--CceeEEEeccc
Q psy18018        218 TLIGHTGGVWSSQMA--GNIIISGS--TDRTLKGWSNA  251 (635)
Q Consensus       218 ~~~~h~~~v~~~~~~--~~~l~s~~--~dg~i~~w~~~  251 (635)
                      .+.........++++  +..|+...  ..+.|...+++
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            233444556777775  34444443  24566665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.01  E-value=0.19  Score=45.50  Aligned_cols=149  Identities=9%  Similarity=0.036  Sum_probs=87.8

Q ss_pred             EEEEEe-CCCcEEEEeCCCCceeee-ecc----C--CccEEEEEe---cC--CEEEEEe-------------CCCcEEEE
Q psy18018        428 HVVSGS-LDTSIRVWEAESGNLRHT-LMG----H--QSLTSGMEL---RN--NILVSGN-------------ADSTVKVW  481 (635)
Q Consensus       428 ~l~~~~-~d~~i~~~d~~~~~~~~~-~~~----~--~~~v~~~~~---~~--~~l~s~~-------------~dg~i~iw  481 (635)
                      .+..++ ..++|..|+...+..... +.+    .  ...+.++.+   ++  .++++..             .+..+..|
T Consensus        26 ~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~  105 (334)
T 2p9w_A           26 VFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSF  105 (334)
T ss_dssp             EEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEE
T ss_pred             EEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEE
Confidence            344443 678888888765543322 221    1  113467777   43  3444433             26779999


Q ss_pred             ECC---CCceeEEecCCCc----------ccccEEEEEe--cCCEEEEEeCC-CcEEEEECCCCceeeeeccceecCcee
Q psy18018        482 DIV---SGQCLQTLSGRNK----------HQSAVTCLQF--NSRFVITSSDD-GTVKLWDVKTGEFSTPLMSSFILNPFY  545 (635)
Q Consensus       482 d~~---~~~~~~~~~~~~~----------~~~~v~~~~~--~~~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~  545 (635)
                      |+.   +++.+........          .......++.  +|+..++++.- +.|...+.... ....+.......   
T Consensus       106 Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~---  181 (334)
T 2p9w_A          106 NLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNG---  181 (334)
T ss_dssp             ESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCS---
T ss_pred             cCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCc---
Confidence            999   7776665542100          0123666777  48888888877 77666665533 222221110000   


Q ss_pred             EEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        546 FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                        ......+.++++|||++|++....|.+..+|+.+.
T Consensus       182 --~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          182 --GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             --SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             --ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence              01234678999999998888877999999998843

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.97  E-value=0.22  Score=45.69  Aligned_cols=92  Identities=10%  Similarity=-0.094  Sum_probs=46.3

Q ss_pred             CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE-eCCCcEEEEECCC---CeEEE-EEeCCCCCeEEEEee--C
Q psy18018        161 DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG-SDDNTLKVWSATT---GKCLR-TLIGHTGGVWSSQMA--G  233 (635)
Q Consensus       161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~---~~~~~-~~~~h~~~v~~~~~~--~  233 (635)
                      ...|+..|+.+.+.................+.++.|+.+ ...+.|..+++..   +.... .+.........++++  +
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            356788888776544332222222223333344555544 4568899998875   12222 232222344566664  4


Q ss_pred             C-EEEEeeCceeEEEecccc
Q psy18018        234 N-IIISGSTDRTLKGWSNAE  252 (635)
Q Consensus       234 ~-~l~s~~~dg~i~~w~~~~  252 (635)
                      + ..++-...+.|.+.++..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTS
T ss_pred             CeEEEEECCCCEEEEEeCCC
Confidence            4 444545667787777554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.88  E-value=0.26  Score=45.17  Aligned_cols=190  Identities=13%  Similarity=0.062  Sum_probs=105.4

Q ss_pred             ceEEEEecCcEE-EEecCCCeEEEEEccC----CceEEeeeCCCcceeEEEEe--CCE-EEEEeCCCcEEEEEccCCcce
Q psy18018        345 DLFGFQFDGVHV-VSGSLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELR--NNI-LVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       345 ~~~~~s~~~~~l-~~~~~dg~i~v~~~~~----~~~~~~~~~~~~~v~~l~~~--~~~-l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      ..+++++.+..| ++-...+.|..+++..    ......+...-.....++++  +.. .++-...+.|.+.++......
T Consensus        33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~  112 (316)
T 1ijq_A           33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  112 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred             EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE
Confidence            345677755444 4545568899998875    22222232222345677775  444 445566788988888754332


Q ss_pred             eEEE---------EEeeCCcEEEEEeCC--CcEEEEeCCCCceeeee-ccCCccEEEEEec--CCEEE-EEeCCCcEEEE
Q psy18018        417 LMFR---------ICLFDGVHVVSGSLD--TSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NNILV-SGNADSTVKVW  481 (635)
Q Consensus       417 ~~~~---------~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iw  481 (635)
                      ....         .+.|.+..|+.+...  +.|..+++. ++....+ ...-....+++++  ++.|. +-...+.|..+
T Consensus       113 ~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~  191 (316)
T 1ijq_A          113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (316)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence            2221         355556655555543  678888875 3333333 2223456677775  44544 44456789999


Q ss_pred             ECCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018        482 DIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       482 d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~  536 (635)
                      |+.... ...+............++++ +.++++-...+.|..++..+++....+.
T Consensus       192 d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          192 DVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             ETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            987432 33332110112234556665 4455555567889999987777555543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.87  E-value=0.19  Score=47.15  Aligned_cols=228  Identities=9%  Similarity=0.051  Sum_probs=119.0

Q ss_pred             EEecCcEEEEecC-CCeEEEEEccC--CceE--Eeee-CCCcceeEEEEeCCEEEEEeC-C---------CcEEEEEccC
Q psy18018        349 FQFDGVHVVSGSL-DTSIRVWEAES--GNLR--HTLM-GHQSLTSGMELRNNILVSGNA-D---------STVKVWDIVS  412 (635)
Q Consensus       349 ~s~~~~~l~~~~~-dg~i~v~~~~~--~~~~--~~~~-~~~~~v~~l~~~~~~l~s~~~-d---------g~i~iwd~~~  412 (635)
                      ...++..++.|+. ...+.+||..+  .+-.  ..+. .....-.+....+.+++.|+. +         ..+..||+.+
T Consensus        16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             EEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             EEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            3446777677654 35688899864  2221  1122 112222333445666666665 2         3578888766


Q ss_pred             Ccce----------eEEEEEeeCCcEEEEEeCC---------------------------------------CcEEEEeC
Q psy18018        413 GTKK----------LMFRICLFDGVHVVSGSLD---------------------------------------TSIRVWEA  443 (635)
Q Consensus       413 ~~~~----------~~~~~~~~~~~~l~~~~~d---------------------------------------~~i~~~d~  443 (635)
                      .+-.          ........+++.++.|+.+                                       ..+.+||.
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            4321          1122344677888888754                                       57889998


Q ss_pred             CCCceee--eeccC-CccEEEEEecCCEEEEEeC------CCcEEEEEC--CCCceeEEecCCCcc--cccEEEEEecCC
Q psy18018        444 ESGNLRH--TLMGH-QSLTSGMELRNNILVSGNA------DSTVKVWDI--VSGQCLQTLSGRNKH--QSAVTCLQFNSR  510 (635)
Q Consensus       444 ~~~~~~~--~~~~~-~~~v~~~~~~~~~l~s~~~------dg~i~iwd~--~~~~~~~~~~~~~~~--~~~v~~~~~~~~  510 (635)
                      .+.+-..  .+... .....++..++.+++.|+.      ...+..||+  .+.+ -..+......  .....++..+++
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISNDS  254 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEETTE
T ss_pred             CCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEECCE
Confidence            8765432  22211 1113334456667777664      345777887  3332 2222211001  112334556888


Q ss_pred             EEEEEeCC----------------------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        511 FVITSSDD----------------------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       511 ~l~~~~~d----------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      +++.|+.+                      ..+.+||+.+.+....-..     +      .......+...++++++.|
T Consensus       255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----p------~~r~~~~~~~~~~~i~v~G  323 (357)
T 2uvk_A          255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-----S------QGRAYGVSLPWNNSLLIIG  323 (357)
T ss_dssp             EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-----S------SCCBSSEEEEETTEEEEEE
T ss_pred             EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-----C------CCcccceeEEeCCEEEEEe
Confidence            88888742                      2578899887764432111     0      0111122233478888888


Q ss_pred             cCCC------eEEEEeCCCCceEEee
Q psy18018        569 SDDG------TVKLWDVKTGEFIRNL  588 (635)
Q Consensus       569 ~~d~------~v~iwd~~~~~~~~~~  588 (635)
                      +.++      .|.++++++++.+...
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            8653      4666788888877655

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.87  E-value=0.3  Score=45.74  Aligned_cols=259  Identities=8%  Similarity=0.035  Sum_probs=144.0

Q ss_pred             cCCEEEEE---eCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeE
Q psy18018        151 DGKLVVSG---AYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW  227 (635)
Q Consensus       151 ~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  227 (635)
                      .++++..-   +.+.+|.|-|+.++....+......  .....+....++.- ....+.++|+++.+.++.+.-... |.
T Consensus        34 SDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad--sAIMnP~~~iiALr-ag~~lQiFnle~K~klks~~~~e~-Vv  109 (494)
T 1bpo_A           34 SDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDD-VT  109 (494)
T ss_dssp             ETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS--EEEECSSSSCEEEE-ETTEEEEEETTTTEEEEEEECSSC-CC
T ss_pred             cCceEEEEecCCCCCeEEEEECCCCCcceecccccc--eeeeCCCCcEEEEe-cCCeEEEEchHHhhhhcceecCCC-ce
Confidence            34444443   2344788999988765433222222  22233334444444 478999999999999988875554 44


Q ss_pred             EEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        228 SSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       228 ~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      -=.| +.+.|+-.+ +..|.-|++.+...... +.+..             +.+         ....+..          
T Consensus       110 fWkWis~~~l~lVT-~taVyHWsi~~~s~P~k-vFdR~-------------~~L---------~~~QIIn----------  155 (494)
T 1bpo_A          110 FWKWISLNTVALVT-DNAVYHWSMEGESQPVK-MFDRH-------------SSL---------AGCQIIN----------  155 (494)
T ss_dssp             EEEEEETTEEEEEC-SSEEEEEESSSSCCCEE-EEECC-------------GGG---------TTCEEEE----------
T ss_pred             EEEecCCCeEEEEc-CCeeEEecccCCCCchh-heecc-------------hhc---------ccceEEE----------
Confidence            4444 566666554 46799999865211000 00000             000         0011111          


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-------CCCeEEEEEccCCceEEee
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-------LDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~v~~~~~~~~~~~~  379 (635)
                                                              ...+++.++++..+       -.|.+.+|+.+. +..+.+
T Consensus       156 ----------------------------------------Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~i  194 (494)
T 1bpo_A          156 ----------------------------------------YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPI  194 (494)
T ss_dssp             ----------------------------------------EEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEE
T ss_pred             ----------------------------------------EEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchh
Confidence                                                    11223333333211       247899999874 455677


Q ss_pred             eCCCcceeEEEEeC-----CEEEEEeC---CCcEEEEEccCC---cc---eeEEE---------------EEeeCCcEEE
Q psy18018        380 MGHQSLTSGMELRN-----NILVSGNA---DSTVKVWDIVSG---TK---KLMFR---------------ICLFDGVHVV  430 (635)
Q Consensus       380 ~~~~~~v~~l~~~~-----~~l~s~~~---dg~i~iwd~~~~---~~---~~~~~---------------~~~~~~~~l~  430 (635)
                      .+|...-..+...+     ..+..+..   .+.+.+.++...   ..   .....               ..++.-..+.
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            88876655555542     23444433   278889888543   11   11111               2344566788


Q ss_pred             EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCce
Q psy18018        431 SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQC  488 (635)
Q Consensus       431 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~  488 (635)
                      .-+.-|.+++||++++.++..-+-....|..-+.+  ..-++.....|.|.--.+.+...
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            88899999999999999887766555555544442  33555555777666666555443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.76  E-value=0.071  Score=49.76  Aligned_cols=159  Identities=9%  Similarity=0.071  Sum_probs=92.9

Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeEEecCCC-cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeee------
Q psy18018        465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRN-KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPL------  535 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~------  535 (635)
                      ++..++.+- ++.||.-++......+.+..+. -.-..|..+..  +|++||..+ +..|.|-.+..+.....-      
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            444444432 3667777776444444444321 01113333444  789998886 457999999854321110      


Q ss_pred             -c-cceecCceeEEeccCceecccccCC---CeEEEEecCCCeEEEEeCCCCceEE-eee----eccCCCCCceEEEEEe
Q psy18018        536 -M-SSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDGTVKLWDVKTGEFIR-NLV----SLDSGGSGGVVWRIRA  605 (635)
Q Consensus       536 -~-~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~v~iwd~~~~~~~~-~~~----~~~~~~~~~~i~~l~~  605 (635)
                       . ......+.. .....+|..+.|+|-   +..|++-..|+.|++||+....... .+.    .+........|.+++|
T Consensus       109 ~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence             0 011111111 112567999999994   5688999999999999998632111 121    1111223367999999


Q ss_pred             CCCCeEEEE--ccCCCeeEeEEEEEee
Q psy18018        606 SETKLVCAV--GSRNGTEETKLLVLDF  630 (635)
Q Consensus       606 s~d~~~l~~--~~~dg~~~~~l~~~d~  630 (635)
                      .+++-.|.+  .+++|.    ||.+.+
T Consensus       188 g~~~lTLYvl~~t~~GD----IYAlcP  210 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGD----IFAFYP  210 (452)
T ss_dssp             CTTSSCEEEEECTTSCE----EEEESS
T ss_pred             cCCCcEEEEEecCCCCC----EEEECC
Confidence            999987777  458887    777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.76  E-value=0.16  Score=47.07  Aligned_cols=144  Identities=10%  Similarity=0.038  Sum_probs=78.2

Q ss_pred             CCCcEEEEECCCCc-eeEEec--C--CCcccccEEEEEe----cCC-EEEEE-eC--CCcEEEEECCCCceeeeecccee
Q psy18018        474 ADSTVKVWDIVSGQ-CLQTLS--G--RNKHQSAVTCLQF----NSR-FVITS-SD--DGTVKLWDVKTGEFSTPLMSSFI  540 (635)
Q Consensus       474 ~dg~i~iwd~~~~~-~~~~~~--~--~~~~~~~v~~~~~----~~~-~l~~~-~~--d~~i~vwd~~~~~~~~~~~~~~~  540 (635)
                      .+|.|.++|+++.. ...++.  +  .....-....+.+    ++. +|+.+ ..  +.++.+|++..+...........
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987421 122222  1  1112234445554    343 34444 33  46788887765432222221111


Q ss_pred             cCceeEEeccCceecccccCCCeEEEEecC-----------------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEE
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSD-----------------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRI  603 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l  603 (635)
                      ..      --...+.+.+.++|++.++...                 .|.|.-+|.  ++......      .-.....+
T Consensus       161 g~------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~------~l~~pNGi  226 (355)
T 3sre_A          161 HK------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE------GFDFANGI  226 (355)
T ss_dssp             CT------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEE------EESSEEEE
T ss_pred             cC------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeec------CCcccCcc
Confidence            11      1234678889999998887641                 244555554  33222221      12346789


Q ss_pred             EeCCCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018        604 RASETKLVCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       604 ~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                      +||||++.|.++.....   +||.||++.++
T Consensus       227 a~spDg~~lYvadt~~~---~I~~~~~~~~g  254 (355)
T 3sre_A          227 NISPDGKYVYIAELLAH---KIHVYEKHANW  254 (355)
T ss_dssp             EECTTSSEEEEEEGGGT---EEEEEEECTTS
T ss_pred             eECCCCCEEEEEeCCCC---eEEEEEECCCC
Confidence            99999988887765443   58888887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.68  E-value=0.46  Score=45.22  Aligned_cols=191  Identities=13%  Similarity=0.059  Sum_probs=108.5

Q ss_pred             ceEEEEecCcEEE-EecCCCeEEEEEccCC----ceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcce
Q psy18018        345 DLFGFQFDGVHVV-SGSLDTSIRVWEAESG----NLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       345 ~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~----~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      ..+++++.+..|+ +-...+.|+.+++...    .....+.........++++  +. +.++-...+.|.+.++......
T Consensus       115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~  194 (400)
T 3p5b_L          115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  194 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE
T ss_pred             eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE
Confidence            3456776544444 4445678888887652    2233333334456777776  34 4455556778888888765433


Q ss_pred             eEEE---------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEE-eCCCcEEEEE
Q psy18018        417 LMFR---------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWD  482 (635)
Q Consensus       417 ~~~~---------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd  482 (635)
                      ....         .+.|.+.+|+....  .+.|...++............-....+++++  +..|..+ ...+.|..+|
T Consensus       195 ~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d  274 (400)
T 3p5b_L          195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  274 (400)
T ss_dssp             EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence            3322         35555556655553  3678888876443333333333456677775  4455444 4567899999


Q ss_pred             CCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018        483 IVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~  536 (635)
                      +........+... ........++.+ +.++++-...+.|..++..+++....+.
T Consensus       275 ~dG~~~~~~~~~~-~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          275 VNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TTSCCCEEEEECS-STTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CCCCccEEEEeCC-CCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            8654332222211 112234456664 4555566667889999988887665554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.61  E-value=0.88  Score=47.52  Aligned_cols=190  Identities=13%  Similarity=0.034  Sum_probs=107.5

Q ss_pred             ceEEEEecC-cEEEEecCCCeEEEEEccCC----ceEEeeeCCCcceeEEEEe--C-CEEEEEeCCCcEEEEEccCCcce
Q psy18018        345 DLFGFQFDG-VHVVSGSLDTSIRVWEAESG----NLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       345 ~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~----~~~~~~~~~~~~v~~l~~~--~-~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      ..+++.+.. ..+++-...+.|+.+++...    .....+........+|+++  + .+.++-...+.|.+.++......
T Consensus       427 ~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~  506 (791)
T 3m0c_C          427 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  506 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred             EEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE
Confidence            446666644 44455555678888887642    2233333344556778876  4 45555566788999888765433


Q ss_pred             eEE---------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEE-eCCCcEEEEE
Q psy18018        417 LMF---------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWD  482 (635)
Q Consensus       417 ~~~---------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd  482 (635)
                      ...         .++.|.+.+|+....  .+.|...++........+...-....+|+++  ...|..+ ...+.|...+
T Consensus       507 ~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d  586 (791)
T 3m0c_C          507 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  586 (791)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            322         134555555655553  2678888886444433333333466777775  4444444 4557899999


Q ss_pred             CCCCceeEEecCCCcccccEEEEEecCCEEE-EEeCCCcEEEEECCCCceeeee
Q psy18018        483 IVSGQCLQTLSGRNKHQSAVTCLQFNSRFVI-TSSDDGTVKLWDVKTGEFSTPL  535 (635)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~  535 (635)
                      +........+.... ......+|++.+.+|+ +-...+.|...+..+++.+..+
T Consensus       587 ~dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          587 VNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cCCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            86544333332211 1223446666554544 4446678888888777655544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.56  E-value=0.45  Score=43.56  Aligned_cols=212  Identities=9%  Similarity=0.063  Sum_probs=115.6

Q ss_pred             CCeEEEEEccCCc-eEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCccee-EE---------EEEeeCCc
Q psy18018        362 DTSIRVWEAESGN-LRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKL-MF---------RICLFDGV  427 (635)
Q Consensus       362 dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~-~~---------~~~~~~~~  427 (635)
                      ...|+..++.... .............++.|+  ++ +.++-...+.|..+++....... ..         ..+.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4578888987653 111111122356678887  34 44455567788888887663211 11         12333333


Q ss_pred             -EEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEe--CCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018        428 -HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN--ADSTVKVWDIVSGQCLQTLSGRNKHQSAV  502 (635)
Q Consensus       428 -~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  502 (635)
                       .+++-...+.|.++++........+........+++++  +..|..+.  ..+.|...++.... ...+...  .-...
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~--~l~~P  168 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINS--EIYWP  168 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECS--SCSCE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEEC--CCCCc
Confidence             34444456788888876543332232333445666665  34554444  35778888876332 2332210  22334


Q ss_pred             EEEEec--CCEEEE-EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        503 TCLQFN--SRFVIT-SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       503 ~~~~~~--~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                      ..+++|  +..|+. -+..+.|..+|+..... ..+...          .......+++. .+.++.+-...+.|..++.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~----------~~~~P~glav~-~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKG----------SLPHPFALTLF-EDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS----------CCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecC----------CCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence            667774  455544 44567899999864322 222110          11223455554 4466666667789999998


Q ss_pred             CCCceEEee
Q psy18018        580 KTGEFIRNL  588 (635)
Q Consensus       580 ~~~~~~~~~  588 (635)
                      .+|+.+..+
T Consensus       237 ~~G~~~~~i  245 (318)
T 3sov_A          237 YTGEGLREI  245 (318)
T ss_dssp             TTCCSCEEE
T ss_pred             CCCCceEEE
Confidence            777765544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.32  E-value=0.77  Score=43.69  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=30.4

Q ss_pred             CCcEEEEeCCCCeEEEEeeCCCcceEEEEec--CCEE-EEEeCCCeEEEEeCCC
Q psy18018        121 DATLRVWHIESGECLHVLVGHLAAVRCVQYD--GKLV-VSGAYDYMVKIWNPDT  171 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~--~~~l-~s~~~dg~v~iwd~~~  171 (635)
                      ...|+..++...+....+ .....+..++|+  ++.| ++-...+.|..+++..
T Consensus        91 ~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g  143 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR  143 (400)
T ss_dssp             TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence            356777777665544443 345567888883  4444 4445678888888865

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.12  E-value=1.2  Score=46.08  Aligned_cols=185  Identities=9%  Similarity=0.080  Sum_probs=91.4

Q ss_pred             cEEEEeCCCCceee--eeccCCccEEEEEe-cCCEEEEEeCCC--cEEEEECCCCceeEEecC--CCcccccEEEEEec-
Q psy18018        437 SIRVWEAESGNLRH--TLMGHQSLTSGMEL-RNNILVSGNADS--TVKVWDIVSGQCLQTLSG--RNKHQSAVTCLQFN-  508 (635)
Q Consensus       437 ~i~~~d~~~~~~~~--~~~~~~~~v~~~~~-~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~-  508 (635)
                      .+.+||..+.+-..  .+......-.+..+ ++.+++.|+.++  .+.+||+.+.+-...-..  .........++.++ 
T Consensus       469 dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             CCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred             cEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence            36667776643221  12212222234443 777888887654  699999987653222110  00011122334444 


Q ss_pred             --CCEEEEEeC--C-----CcEEEEECCCCce-----eeeeccceecCceeEEeccCceecccccCCCeEEEEecC----
Q psy18018        509 --SRFVITSSD--D-----GTVKLWDVKTGEF-----STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD----  570 (635)
Q Consensus       509 --~~~l~~~~~--d-----~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----  570 (635)
                        ++.++.|+.  +     ..+.+||+.+.+.     -..+.. ..  +     ....-.+++...++++++.|+.    
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~-~p--~-----~~R~~~~~~~~~~~~iyv~GG~~~~~  620 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ-HP--L-----FQRYGSQIKYITPRKLLIVGGTSPSG  620 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE-CG--G-----GCCBSCEEEEEETTEEEEECCBCSSC
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC-CC--C-----CCcccceEEEeCCCEEEEECCccCCC
Confidence              667788775  2     4588999988772     111110 00  0     0000011222223888888874    


Q ss_pred             ----CCeEEEEeCCCCceEEeeeeccCCC-----CCceEEEEEeCCCCeEEEEccCC-----CeeEeEEEEEeee
Q psy18018        571 ----DGTVKLWDVKTGEFIRNLVSLDSGG-----SGGVVWRIRASETKLVCAVGSRN-----GTEETKLLVLDFD  631 (635)
Q Consensus       571 ----d~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~d~~~l~~~~~d-----g~~~~~l~~~d~~  631 (635)
                          ...+.+||+.+.+... +. +....     ....-.++...++|++++.|+..     |+.--.+|.+|+.
T Consensus       621 ~~~~~~~v~~yd~~t~~W~~-~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~  693 (695)
T 2zwa_A          621 LFDRTNSIISLDPLSETLTS-IP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAI  693 (695)
T ss_dssp             CCCTTTSEEEEETTTTEEEE-CC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEEC
T ss_pred             CCCCCCeEEEEECCCCeEEE-ee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEE
Confidence                3469999999887652 21 10000     00000234445677888888743     3333357777764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.11  E-value=0.079  Score=54.78  Aligned_cols=192  Identities=13%  Similarity=0.059  Sum_probs=101.8

Q ss_pred             CCceEEEEecCcEEEEe-cCCCeEEEEEccC----CceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCc
Q psy18018        343 VPDLFGFQFDGVHVVSG-SLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~----~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~  414 (635)
                      .+..+++++.+..|+.+ ...+.|+.+++..    ......+.........++++   +.++++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            34557788866666555 4457899998875    22222222222234556664   3444454566788888876543


Q ss_pred             ceeEEE---------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeee-ccCCccEEEEEec---CCEEEEEeCCCcEE
Q psy18018        415 KKLMFR---------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTL-MGHQSLTSGMELR---NNILVSGNADSTVK  479 (635)
Q Consensus       415 ~~~~~~---------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~s~~~dg~i~  479 (635)
                      ......         .+.|.+.+|+.+..  .+.|..+++.... ...+ ...-....+|+++   +.++++-...+.|.
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            322211         23444444444432  2567777665322 2222 1122234456664   34555656678899


Q ss_pred             EEECCCCceeEEecCCCcccccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018        480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNS-RFVITSSDDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~  536 (635)
                      .+++.... ...+............+++++ .++++....+.|..++..+++.+..+.
T Consensus       566 ~~d~dG~~-~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          566 SIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECSSSSC-CEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEccCCCc-eEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            99986433 233321111112233455554 444555567889999988887766654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.00  E-value=0.59  Score=48.32  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=98.2

Q ss_pred             CcEEEEeCCCCceeeee--------ccCCccEEEEEe--cCCEEEEEeCC------CcEEEEECCCCceeEEecCCCccc
Q psy18018        436 TSIRVWEAESGNLRHTL--------MGHQSLTSGMEL--RNNILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQ  499 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~--------~~~~~~v~~~~~--~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~  499 (635)
                      ..+.+||..+++-...-        ......-.+...  ++.+++.|+.+      ..+.+||+.+.+-... .......
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~~p~~R  490 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KSLSHTR  490 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC-CCCSBCC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC-CCCCCCc
Confidence            35677777765433222        111122334555  66677777754      3578899887543222 1111122


Q ss_pred             ccEEEEEe-cCCEEEEEeCCC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecC--C--
Q psy18018        500 SAVTCLQF-NSRFVITSSDDG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSD--D--  571 (635)
Q Consensus       500 ~~v~~~~~-~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~--d--  571 (635)
                      ..-.+..+ ++++++.|+.++  .+.+||..+.+.........  .+..    ...-.++.+..+ +++++.|+.  +  
T Consensus       491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~--~p~~----r~~~~a~v~~~~~~~iyv~GG~~~~~~  564 (695)
T 2zwa_A          491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE--FFQN----SLVSAGLEFDPVSKQGIILGGGFMDQT  564 (695)
T ss_dssp             BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG--GGGS----CCBSCEEEEETTTTEEEEECCBCTTSS
T ss_pred             ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC--CCCc----ccceeEEEEeCCCCEEEEECCcCCCCC
Confidence            33344554 888888888655  69999998876443321100  0000    001112333444 778888875  2  


Q ss_pred             ---CeEEEEeCCCCce-----EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe----eEeEEEEEeeecC
Q psy18018        572 ---GTVKLWDVKTGEF-----IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT----EETKLLVLDFDVD  633 (635)
Q Consensus       572 ---~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~----~~~~l~~~d~~~~  633 (635)
                         +.+.+||+.+.+.     -..+....+.+. ... +++...++++++.|+.++.    ..-.++.||++.+
T Consensus       565 ~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          565 TVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             CBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             eeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence               4689999998872     111211100111 111 2223344788888885432    1234788887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.96  E-value=0.98  Score=41.54  Aligned_cols=259  Identities=11%  Similarity=0.053  Sum_probs=123.5

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeee----CCCcceeEEEEeCCEEEEEeCCCcEEE-------EEccCCc--
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMELRNNILVSGNADSTVKV-------WDIVSGT--  414 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~----~~~~~v~~l~~~~~~l~s~~~dg~i~i-------wd~~~~~--  414 (635)
                      .+..++..+++| ..|.| +...+.++.-....    .....+.++.++++.++.++..+.|..       |......  
T Consensus        42 ~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~  119 (327)
T 2xbg_A           42 SFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPK  119 (327)
T ss_dssp             EESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTT
T ss_pred             EECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccC
Confidence            333355556644 46654 33333343222221    124467888888666666666664443       1111100  


Q ss_pred             -ceeEEEE-EeeCCcEEEEEeCCCcEEEEeCCCCce-eeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCcee
Q psy18018        415 -KKLMFRI-CLFDGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       415 -~~~~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                       ......+ ..+++..+++ +.++.+.. ..+.++- .....+....+.++.+.  +.+++.+ .+|.+..-+-..++.-
T Consensus       120 ~~~~~~~i~~~~~~~~~~~-~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMI-TNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEE-ETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSC
T ss_pred             CCCCeEEEEEECCCCEEEE-eCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCce
Confidence             0111222 3345554444 44554432 1122322 22223344567777764  3455444 5555544321112222


Q ss_pred             EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        490 QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                      ..+..  .....+..+.+  +++ ++.++.+|.+++.+...++.-..+...    .   ......+.++++.+++.++++
T Consensus       197 ~~~~~--~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          197 EPHNR--TTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSP----L---RRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             EEEEC--CSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEECCCBCT----T---SSCCSCEEEEEESSSSCEEEE
T ss_pred             eECCC--CCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCeeEeccCC----c---ccCCcceEEEEecCCCEEEEE
Confidence            22221  13456677777  344 445566788777643323322211110    0   001234677888888887776


Q ss_pred             ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       568 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      +. ++.+ .+....|+.-..+...  ......+.++.|.++++++ +++.+|.    ++.++-
T Consensus       267 g~-~g~i-~~S~DgG~tW~~~~~~--~~~~~~~~~v~~~~~~~~~-~~G~~G~----i~~~~~  320 (327)
T 2xbg_A          267 GG-AGAL-LCSQDGGQTWQQDVDV--KKVPSNFYKILFFSPDQGF-ILGQKGI----LLRYVT  320 (327)
T ss_dssp             ES-TTCE-EEESSTTSSCEECGGG--TTSSSCCCEEEEEETTEEE-EECSTTE----EEEECC
T ss_pred             eC-CCeE-EEeCCCCcccEEcCcc--CCCCCCeEEEEEECCCceE-EEcCCce----EEEEcC
Confidence            65 6666 3444545433223210  1223567888888767654 5566786    666653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.93  E-value=1  Score=41.60  Aligned_cols=64  Identities=11%  Similarity=0.028  Sum_probs=42.4

Q ss_pred             ceecccccCCCeEEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEccCC
Q psy18018        552 PLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGSRN  618 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~~d  618 (635)
                      .-+.++||||++.|..+. ..+.|..|++.....+.....+   ...+..-.++..+ +|.+.+++..+
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE---eCCCCCceEEEeCCCCcEEEEecCC
Confidence            457899999998776654 5689999998642222222221   1245678889998 58877766533

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.91  E-value=1  Score=41.41  Aligned_cols=60  Identities=5%  Similarity=-0.018  Sum_probs=33.4

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeeeC---CCcceeEEEEe-CCEEEEEeCCCcEEEEE
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG---HQSLTSGMELR-NNILVSGNADSTVKVWD  409 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~---~~~~v~~l~~~-~~~l~s~~~dg~i~iwd  409 (635)
                      .+.+++..++++. +|.+ .+..+.++.-..+..   ....+.++.+. +..++.++.+|.+.-++
T Consensus       256 ~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          256 AYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             EecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            3445556555544 5655 344455554443332   23456777774 56677777777665544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.83  E-value=2.2  Score=44.56  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             CCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCC
Q psy18018        121 DATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT  171 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~  171 (635)
                      ...|+..++...+....+. ....+..|+|   ++..+++-...+.|+.+++..
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g  455 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR  455 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccC
Confidence            4557777776655444443 3455678888   344455555668888888875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.60  E-value=0.09  Score=54.36  Aligned_cols=137  Identities=9%  Similarity=-0.067  Sum_probs=68.2

Q ss_pred             EEEEEc---CCEEEEeeCCCcEEEEECCCCcEE------------EEEeeCCCcEEEEeCCCCeEEEE----------e-
Q psy18018         85 TCLQFS---GSRIVSGSDDNTLKVWSATTGKCL------------LVSGSRDATLRVWHIESGECLHV----------L-  138 (635)
Q Consensus        85 ~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~l------------l~~~~~dg~i~vwd~~~~~~~~~----------l-  138 (635)
                      ..|+++   ++++++-...+.|.+.++......            ++.....|.|++-|......+..          + 
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~  535 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  535 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence            356665   555555566788888887654432            22222233343333221111111          1 


Q ss_pred             eCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCCccceeeccc--cceeEEeeeccCCCEEEEEeCCCcEEEEECCCC
Q psy18018        139 VGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDTEECLHAELQ--ETEVELSHGYALRSRIVSGSDDNTLKVWSATTG  213 (635)
Q Consensus       139 ~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  213 (635)
                      ...-..-+.|++  + +.+.++-+..+.|..++++..........  .......+....+..+++....+.|..++..++
T Consensus       536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred             eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence            111223346777  3 44555556678899999875332211111  111111122223444555556678888888788


Q ss_pred             eEEEEEeC
Q psy18018        214 KCLRTLIG  221 (635)
Q Consensus       214 ~~~~~~~~  221 (635)
                      +.+..+..
T Consensus       616 ~~~~~i~~  623 (699)
T 1n7d_A          616 SDVNLLAE  623 (699)
T ss_dssp             EEEECCCT
T ss_pred             CceEEeec
Confidence            77766643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.33  E-value=1.2  Score=48.96  Aligned_cols=228  Identities=12%  Similarity=0.121  Sum_probs=112.2

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV  427 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  427 (635)
                      .+|..+.++.-. ...+.+||+.+.+.++.+.-.. .|....|- ++.|+..+ +..|..|++....             
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s-------------  136 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGES-------------  136 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc-CCeEEEeccCCCC-------------
Confidence            556556555544 6789999999888777665543 45555553 44444433 3346666654211             


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeccC----CccEEEEEe--cCCEEEEE-------eCCCcEEEEECCCCceeEEecC
Q psy18018        428 HVVSGSLDTSIRVWEAESGNLRHTLMGH----QSLTSGMEL--RNNILVSG-------NADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                                         .+...+.-|    ...|.....  +.++++..       .-.|.+.+|+.+.+ ..+.+.+
T Consensus       137 -------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ieg  196 (1630)
T 1xi4_A          137 -------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG  196 (1630)
T ss_pred             -------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhH
Confidence                               111111111    112222222  22333222       23478889987643 2333433


Q ss_pred             CCcccccEEEEEec-----CCEEEEEeC---CCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        495 RNKHQSAVTCLQFN-----SRFVITSSD---DGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       495 ~~~~~~~v~~~~~~-----~~~l~~~~~---d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                         |...-..+..+     ...++.+..   .+.++|-++... .....+......-.+..-.-..-..++..|+.-..+
T Consensus       197 ---ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~i  273 (1630)
T 1xi4_A          197 ---HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  273 (1630)
T ss_pred             ---hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEE
Confidence               33222222221     112221111   267888888543 111111110000000000112234567778888888


Q ss_pred             EEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        566 ITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ...+.-|.+.++|+.||.++..-+     -...+|...+..+...=++.....|.
T Consensus       274 y~itk~G~~~~~d~~t~~~i~~~r-----is~~~iF~~~~~~~~~g~~~vnr~G~  323 (1630)
T 1xi4_A          274 FLITKYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQ  323 (1630)
T ss_pred             EEEecCceEEEEecccchhhhhcc-----ccCCceEEeccCCCCCceEEEcCCce
Confidence            888999999999999999876552     23444554444433222233335554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.24  E-value=2.5  Score=46.49  Aligned_cols=88  Identities=10%  Similarity=0.041  Sum_probs=52.5

Q ss_pred             CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe-eCCEEEE
Q psy18018        160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM-AGNIIIS  238 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s  238 (635)
                      ...+|.|-|+.++..+.+...  ........|.. .+++--...++.++|+.+.+.++.+.-.. +|.-=.| +.+.|+-
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi--~AdsAIMnP~~-~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~l  121 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPI--SADSAIMNPAS-KVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL  121 (1630)
T ss_pred             CCceEEEEECCCCCCcccccc--cchhhccCCCc-ceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEE
Confidence            344788889888664422211  11122223333 44444457899999999988887765433 4544455 4555544


Q ss_pred             eeCceeEEEecccc
Q psy18018        239 GSTDRTLKGWSNAE  252 (635)
Q Consensus       239 ~~~dg~i~~w~~~~  252 (635)
                      .+ +..|.-|++.+
T Consensus       122 VT-~~aVyHW~~~~  134 (1630)
T 1xi4_A          122 VT-DNAVYHWSMEG  134 (1630)
T ss_pred             Ec-CCeEEEeccCC
Confidence            43 56799999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.22  E-value=2.4  Score=41.12  Aligned_cols=161  Identities=10%  Similarity=0.059  Sum_probs=82.7

Q ss_pred             CCEEEEEeCCCcEEEEECC-------CCce-----------eEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEE
Q psy18018        466 NNILVSGNADSTVKVWDIV-------SGQC-----------LQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLW  524 (635)
Q Consensus       466 ~~~l~s~~~dg~i~iwd~~-------~~~~-----------~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vw  524 (635)
                      +.++++-..++.|..+|+.       ++..           ...+... ........+++  ++++| ++-+..+.|+.+
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence            4466677778889999987       4443           1121110 11233456777  57754 444566788886


Q ss_pred             ECC--CCcee--eeeccce-ec----CceeEEeccCceeccccc-------CCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018        525 DVK--TGEFS--TPLMSSF-IL----NPFYFLIYSQPLLCPHLQ-------FNSRFVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       525 d~~--~~~~~--~~~~~~~-~~----~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      +..  ++...  ..+.... ..    .+........+--.++..       +++.+.++=..+..|+.++ .+|. +.++
T Consensus       338 d~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti  415 (496)
T 3kya_A          338 DYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY  415 (496)
T ss_dssp             EEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred             ecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence            543  33221  1111110 00    000000011111133343       4667777667788999999 5664 4444


Q ss_pred             eeccC---------CC----------CCceEEEEEeCCC-CeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        589 VSLDS---------GG----------SGGVVWRIRASET-KLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       589 ~~~~~---------~~----------~~~~i~~l~~s~d-~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      .....         .+          .-.....|+++++ |.+.++-..+..    |..++++.+
T Consensus       416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r----Irki~~~~~  476 (496)
T 3kya_A          416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT----IRTISMEQE  476 (496)
T ss_dssp             EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE----EEEEEECCC
T ss_pred             ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE----EEEEECCCC
Confidence            32100         01          1134679999997 776666666665    666666543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.68  E-value=2.7  Score=39.00  Aligned_cols=65  Identities=9%  Similarity=0.076  Sum_probs=40.1

Q ss_pred             ceecccccCCCeEEEEecCCCeEEEEeCCCCce---EEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCC
Q psy18018        552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF---IRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNG  619 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg  619 (635)
                      ....++| .+|.++++.-..+.|...+++....   ......+.  .....+..+++.|||.++++.. .+|
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~~~g  337 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTSNRDG  337 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEeCCCC
Confidence            4456667 5788877777778888888765431   11111110  1235789999999998666553 344

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.13  E-value=3  Score=37.19  Aligned_cols=238  Identities=13%  Similarity=0.045  Sum_probs=128.7

Q ss_pred             eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcc-------eeE
Q psy18018        346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK-------KLM  418 (635)
Q Consensus       346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~  418 (635)
                      +..++....+.+.-. ||.++.|-....-.+..-......|..++......+... ||.+..|-......       ...
T Consensus        26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~  103 (282)
T 3qhy_B           26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARSG  103 (282)
T ss_dssp             CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGSSS
T ss_pred             CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccCCC
Confidence            444555444444445 899999976543222111112346778887755544445 99999997553211       111


Q ss_pred             EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        419 FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                      ....+....+.++-. +|.++.|-......+.........|..++......+.-. ||.++.|-......+..   +...
T Consensus       104 v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~---p~~~  178 (282)
T 3qhy_B          104 VDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV---PAEA  178 (282)
T ss_dssp             EEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC---CGGG
T ss_pred             eEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC---ceec
Confidence            222333344444555 999999976542222111122345777777555444445 79999997654322211   1113


Q ss_pred             cccEEEEEecCCEEEEEeCCCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       499 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      ...|..++......+.- .||.++.|-.... ++-.+..            ....|..++...+..++++   ||.|..|
T Consensus       179 ~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~---~g~v~~w  242 (282)
T 3qhy_B          179 QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK---NGKVIAW  242 (282)
T ss_dssp             GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred             CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence            45688888855444444 6999999986643 2211111            1234555555444444443   8899999


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                      --....++.         ....|.+++-.....+.++.
T Consensus       243 G~n~~gq~~---------v~~~v~~iaaG~~h~~al~~  271 (282)
T 3qhy_B          243 GSSRTAPSS---------VQSGVSSIEAGPNAAYALKG  271 (282)
T ss_dssp             STTCCCCGG---------GSSCEEEEEECSSCEEEEEC
T ss_pred             cCCCCcccc---------CCCCcEEEEECcCeEEEEec
Confidence            765433221         12357777766655554443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.58  E-value=4.6  Score=37.48  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             cCceeccccc-------CCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCCee
Q psy18018        550 SQPLLCPHLQ-------FNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNGTE  621 (635)
Q Consensus       550 ~~~v~~~~~s-------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg~~  621 (635)
                      ......++|.       .+++++++.-..+.|...++..++.......+  ......+..|++.|||.++++.. .+|. 
T Consensus       270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp~~v~~~pdG~lyv~td~~~g~-  346 (353)
T 2g8s_A          270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRIRDVRTGPDGYLYVLTDESSGE-  346 (353)
T ss_dssp             CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCEEEEEECTTSCEEEEECSTTEE-
T ss_pred             CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCceeEEEECCCCcEEEEEeCCCCE-
Confidence            3455666665       36888888778888998888876544332211  12245799999999998766533 5564 


Q ss_pred             EeEEEEEe
Q psy18018        622 ETKLLVLD  629 (635)
Q Consensus       622 ~~~l~~~d  629 (635)
                         ||.+.
T Consensus       347 ---I~ri~  351 (353)
T 2g8s_A          347 ---LLKVS  351 (353)
T ss_dssp             ---EEEEE
T ss_pred             ---EEEEe
Confidence               66553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.95  E-value=6.1  Score=37.13  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             CCcEEEEeCCCCceeeeeccC----CccE--EEEEecCCEEEEEeCCCcEEEEECCCCc------------eeEEecCC-
Q psy18018        435 DTSIRVWEAESGNLRHTLMGH----QSLT--SGMELRNNILVSGNADSTVKVWDIVSGQ------------CLQTLSGR-  495 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~----~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~-  495 (635)
                      ++.||.-++.....-+.+...    -..+  ..++++|++||..+. ..|.|-.+..+.            ..+.+... 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            455666666533322232221    1123  334456778877755 468888877321            01122210 


Q ss_pred             --CcccccEEEEEec-----CCEEEEEeCCCcEEEEECCCCceee-eeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018        496 --NKHQSAVTCLQFN-----SRFVITSSDDGTVKLWDVKTGEFST-PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT  567 (635)
Q Consensus       496 --~~~~~~v~~~~~~-----~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  567 (635)
                        .....+|..+.|+     +..|++-..|+.|++||+....... .+...  ......-.....|.+++|.+++-.|..
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~--~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKP--NNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCC--CSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcc--ccccCCCcccceEEEEEEcCCCcEEEE
Confidence              0024678899993     7789999999999999998633111 11110  011110112257889999998876665


Q ss_pred             --ecCCCeEEEE
Q psy18018        568 --SSDDGTVKLW  577 (635)
Q Consensus       568 --~~~d~~v~iw  577 (635)
                        .+.+|.|+-.
T Consensus       197 l~~t~~GDIYAl  208 (452)
T 3pbp_A          197 LNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EecCCCCCEEEE
Confidence              4578877643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.84  E-value=6  Score=36.70  Aligned_cols=67  Identities=9%  Similarity=0.076  Sum_probs=43.0

Q ss_pred             ceecccc-------cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCC
Q psy18018        552 PLLCPHL-------QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNG  619 (635)
Q Consensus       552 ~v~~~~~-------s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg  619 (635)
                      ....++|       ..+|+++++.-..+.|...++.....+.....+. ......+..+++.|||.+.++.. .+|
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~~~~G  334 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTSNRDG  334 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEECTTSS
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEeCCCC
Confidence            4556666       3578888887778889999987642222111111 12346789999999998766654 344

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.73  E-value=5.1  Score=35.66  Aligned_cols=177  Identities=14%  Similarity=0.044  Sum_probs=98.4

Q ss_pred             cceeEEEEeCCEEEEEeCCCcEEEEEccCCcce-------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018        384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKK-------LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ  456 (635)
Q Consensus       384 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  456 (635)
                      ..|..++......+... ||.+..|-.......       ......+....+.+.-. ||.++.|-......+..-..-.
T Consensus        24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~  101 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEAR  101 (282)
T ss_dssp             SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGS
T ss_pred             CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccC
Confidence            36777877766555556 999999975432111       11112222233333335 8999999765422211111113


Q ss_pred             ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceee-ee
Q psy18018        457 SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST-PL  535 (635)
Q Consensus       457 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~  535 (635)
                      ..|..++......+.-. ||.|+.|-......+..   +......|..++......+.-. ||.++.|-......+. +.
T Consensus       102 ~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~---~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~  176 (282)
T 3qhy_B          102 SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV---PAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA  176 (282)
T ss_dssp             SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC---CGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC---CccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce
Confidence            46778887766666666 99999997654322211   1124456888888555544455 7999999876432211 11


Q ss_pred             ccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                      .            ....|..++...+. .++.  .||.|..|-....
T Consensus       177 ~------------~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          177 E------------AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             G------------GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred             e------------cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence            1            12345555544333 3333  4899999976543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.55  E-value=5.7  Score=35.77  Aligned_cols=146  Identities=8%  Similarity=-0.044  Sum_probs=77.4

Q ss_pred             CcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEe----CCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCE
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN----ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRF  511 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  511 (635)
                      ..|+..++..++... +..  .....++++++.++-..    .+..|+..++... ....+..   +..  ..+.++++.
T Consensus        88 ~~Iy~i~~dg~~~~~-l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~---~~~--~~~~~~g~~  158 (302)
T 3s25_A           88 NSLCRIKRNGHGSTV-LDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKN---HYL--FTCNTSDRY  158 (302)
T ss_dssp             EEEEEEETTSCCCEE-EEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEES---SCC--CCSEEETTE
T ss_pred             CeEEEEeCCCCcceE-eec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeC---CCc--eEeeEECCE
Confidence            457777777654322 222  23346777888777655    3345555666533 3444443   211  235667777


Q ss_pred             EEEEeC-CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC--CeEEEEeCCCCceEEee
Q psy18018        512 VITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD--GTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       512 l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~  588 (635)
                      |+-.+. ...|.+-++..+.......              .... ..++|++++|+-...+  ..|..-++..++. ..+
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~~l~~--------------~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~L  222 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEALFYD--------------CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVL  222 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEEEEEC--------------SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EEC
T ss_pred             EEEEeCCCceEEEEECCCCCEEEEeC--------------CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEE
Confidence            775554 6778888877654322211              1111 1355888877765433  3566667665543 333


Q ss_pred             eeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018        589 VSLDSGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       589 ~~~~~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                      .       ...+  ..|+|++.+|.-+
T Consensus       223 t-------~~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          223 T-------EANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             S-------CSCE--EEEEEETTEEEEE
T ss_pred             e-------CCCc--ceEEECCCEEEEE
Confidence            1       1122  2256666666544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.74  E-value=10  Score=37.01  Aligned_cols=261  Identities=10%  Similarity=0.057  Sum_probs=131.9

Q ss_pred             EEEEecCCCeEEEEEccCCceEEeeeCCCcce-eEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-SGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS  431 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~  431 (635)
                      .+.+|+..|.|+++-+.+++.+..+.-.+... +.--++  ...++..+  + ...| -.+........--..||++|..
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~--~-~~~~-gD~HHp~~S~tdg~yDGrylfi  147 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDS--A-KFLN-GDCHHPHISMTDGKYDGKYLFI  147 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGG--G-GCCC-CCCCCCEEEEETTEEEEEEEEE
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcC--C-CccC-CCcCCCcccccCCeeeeEEEEE
Confidence            36788888999999999888888776654311 000000  00010000  0 0000 0000111111112347788888


Q ss_pred             Ee-CCCcEEEEeCCCCceeeeecc-CCccEEEEEec----CCEEEEEeC-------CCcEE---------E---EECCCC
Q psy18018        432 GS-LDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR----NNILVSGNA-------DSTVK---------V---WDIVSG  486 (635)
Q Consensus       432 ~~-~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~----~~~l~s~~~-------dg~i~---------i---wd~~~~  486 (635)
                      .. .+.++...+++..+.-+.+.- ....+.++.+.    -.+++.+++       ||...         +   .|..+.
T Consensus       148 Ndkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm  227 (638)
T 3sbq_A          148 NDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM  227 (638)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC
T ss_pred             ecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCcc
Confidence            77 456788888888776655543 33455566652    346766654       22210         0   111122


Q ss_pred             ceeEEecCCCcccccEEEEEecCCEEEEEeCCC---------------cEEEEECCC-------Cce-------eeeecc
Q psy18018        487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---------------TVKLWDVKT-------GEF-------STPLMS  537 (635)
Q Consensus       487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---------------~i~vwd~~~-------~~~-------~~~~~~  537 (635)
                      +...++...  ..-.-....+++++.++.+.+.               .+.+++++.       |+.       +..+..
T Consensus       228 ~v~~Qv~v~--gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~  305 (638)
T 3sbq_A          228 EMAFQVIVD--GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG  305 (638)
T ss_dssp             SEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             EEEEEEEcC--CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence            111111100  0000111122355655554321               355666431       111       111111


Q ss_pred             ce----ecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCC------ce-------EEeeeeccCCCCCce
Q psy18018        538 SF----ILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTG------EF-------IRNLVSLDSGGSGGV  599 (635)
Q Consensus       538 ~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~------~~-------~~~~~~~~~~~~~~~  599 (635)
                      ..    ...-.+++.-....-.+.++|||+++++++ .+.++.|+|+++-      +.       ..+.      .....
T Consensus       306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~------e~GlG  379 (638)
T 3sbq_A          306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP------ELGLG  379 (638)
T ss_dssp             SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC------BCCSC
T ss_pred             ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec------cCCCc
Confidence            11    112334445555666788999999988866 5789999998752      11       2222      23556


Q ss_pred             EEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        600 VWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       600 i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      ....+|.++|....+..-|..    +..||++
T Consensus       380 PlHt~Fd~~G~aYTtlfidSq----vvkWni~  407 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQ----VVKWNME  407 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTE----EEEEEHH
T ss_pred             ccEEEECCCCceEeeeeecce----EEEEecc
Confidence            789999999977777777776    5555554

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=87.79  E-value=19  Score=34.12  Aligned_cols=71  Identities=13%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             cEEEEEecCCEEEEEeCCCcEEEEECCCCc---------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018        458 LTSGMELRNNILVSGNADSTVKVWDIVSGQ---------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       458 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      .|..++......+.-..||.++.|-.....         ..............|..++......+.-..||.|+.|=...
T Consensus       278 ~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~  357 (406)
T 4d9s_A          278 FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT  357 (406)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             CEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence            466677666666667789999999643211         11111111113346777888777777777899999997653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=86.65  E-value=20  Score=33.14  Aligned_cols=30  Identities=17%  Similarity=0.061  Sum_probs=18.5

Q ss_pred             eEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        599 VVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      ....++| .+|.++++.-..+.    |+.++++.+
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~----v~~v~~~~~  298 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQA----LLRLVLEGE  298 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTE----EEEEEEEEE
T ss_pred             CCcceEE-ECCEEEEEECCCCE----EEEEEECCC
Confidence            4567777 56776666555554    666666543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.25  E-value=13  Score=40.02  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=33.1

Q ss_pred             ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45667777889999999999999999999999988753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=85.46  E-value=16  Score=30.87  Aligned_cols=151  Identities=6%  Similarity=-0.151  Sum_probs=76.1

Q ss_pred             cEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc--------EEEEEec--CCEEEEEeCCCcEEEEE
Q psy18018        458 LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA--------VTCLQFN--SRFVITSSDDGTVKLWD  525 (635)
Q Consensus       458 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------v~~~~~~--~~~l~~~~~d~~i~vwd  525 (635)
                      .+..++++  +.+.++  .+|.++-.+..+.....-+.    ....        -.++.||  |.+.++  .||.|+-++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~----s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG----RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH----HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc----cccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence            44466665  444444  67766666654422111110    1111        2456664  555555  669888777


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee--eeccCCCCCceEEEE
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL--VSLDSGGSGGVVWRI  603 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~i~~l  603 (635)
                      -.+.....-+..    .......--..+..+.|.|+|.+-++.  |+.++-+...++....-+  ........-..-.-+
T Consensus       114 pP~~~~~~Wl~~----a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l  187 (236)
T 1tl2_A          114 PPQSDTDNWIAR----ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL  187 (236)
T ss_dssp             CCCSTTCCHHHH----SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred             CCcCCCCceecc----ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence            644321111110    000000012467889999999988877  777554443322211000  000001223345567


Q ss_pred             EeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        604 RASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       604 ~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      .|.++|.+.++.  +|.    +|.-
T Consensus       188 ~f~~~G~l~~v~--~g~----~Y~~  206 (236)
T 1tl2_A          188 FFSSVGTLFGVQ--GGK----FYED  206 (236)
T ss_dssp             EECTTSCEEEEE--TTE----EEEE
T ss_pred             EECCCCcEEEEe--CCe----EEec
Confidence            799999988877  665    6654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=85.28  E-value=15  Score=35.36  Aligned_cols=112  Identities=11%  Similarity=0.074  Sum_probs=56.2

Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEE-eccCceecccccCC----CeEEEEecC---
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFL-IYSQPLLCPHLQFN----SRFVITSSD---  570 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~----~~~l~~~~~---  570 (635)
                      ....+++  +|+++++-...+.|++++..+++.......    ...... ........++|+||    +.+.++-+.   
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~----~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV----PEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----TTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecC----CccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            3457777  577666554334688887655543221110    000000 01345678999995    444444322   


Q ss_pred             ---------CCeEEEEeCCCC--ce--EEeee-eccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        571 ---------DGTVKLWDVKTG--EF--IRNLV-SLDSGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       571 ---------d~~v~iwd~~~~--~~--~~~~~-~~~~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                               ...|.-+++..+  +.  ...+. .+.. ...-....|+|.|||.+.++.+.
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence                     234555655432  11  11111 1111 11224689999999987666544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.09  E-value=0.95  Score=38.04  Aligned_cols=71  Identities=10%  Similarity=-0.055  Sum_probs=44.8

Q ss_pred             CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee---eccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV---SLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      ..++.++|+|+|.+.++  .+|.+.-.+..+++...-+.   .+...+-.. -.++.|.|+|.+.++  .||.    ||.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~----iyr  111 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDK----LYK  111 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTE----EEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCE----EEE
Confidence            36779999999997777  67777776665522211110   000001111 478999999999888  5586    777


Q ss_pred             Eee
Q psy18018        628 LDF  630 (635)
Q Consensus       628 ~d~  630 (635)
                      ++.
T Consensus       112 ~~p  114 (236)
T 1tl2_A          112 ASP  114 (236)
T ss_dssp             ESC
T ss_pred             eCC
Confidence            764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.22  E-value=34  Score=32.95  Aligned_cols=107  Identities=10%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee--EEecCCC---cccccEEEEEec-----CCEEEEEeC--------
Q psy18018        458 LTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL--QTLSGRN---KHQSAVTCLQFN-----SRFVITSSD--------  517 (635)
Q Consensus       458 ~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~---~~~~~v~~~~~~-----~~~l~~~~~--------  517 (635)
                      ...+|++  +++++++-...+.|++++..+++..  ..+....   ........|+++     +..|+....        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            3456666  4555555443347888886555432  2222110   124556778885     455554442        


Q ss_pred             -----CCcEEEEECCCCc--ee--eeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        518 -----DGTVKLWDVKTGE--FS--TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       518 -----d~~i~vwd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                           ...|.-|+...+.  ..  ..+......      ...+....|+|.|||.+.++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCCCCCeEeECCCCeEEEEECC
Confidence                 1245555543321  10  111000000      01234688999999998777553

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=82.05  E-value=34  Score=32.11  Aligned_cols=180  Identities=12%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCC-c----------eEEeeeC-CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCc
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESG-N----------LRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~-~----------~~~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~  414 (635)
                      ++++....+.+.-+.+|.|+.|-.... +          ....+.. ....|..++......+....+|.|..|-.....
T Consensus       110 v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~G  189 (389)
T 3kci_A          110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYG  189 (389)
T ss_dssp             EEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGG
T ss_pred             EEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCC
Confidence            344445556666677888888864321 0          1111211 223677888878888888899999999643210


Q ss_pred             --------cee------------EEEE-EeeCCcEEEEEeCCCcEEEEeCCCC-c----------eeeeeccC-CccEEE
Q psy18018        415 --------KKL------------MFRI-CLFDGVHVVSGSLDTSIRVWEAESG-N----------LRHTLMGH-QSLTSG  461 (635)
Q Consensus       415 --------~~~------------~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~----------~~~~~~~~-~~~v~~  461 (635)
                              ...            ...+ +.....+.++-..+|.++.|-.... +          ....+... ...|..
T Consensus       190 qLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~  269 (389)
T 3kci_A          190 RLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK  269 (389)
T ss_dssp             TTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEE
T ss_pred             CcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEE
Confidence                    000            0111 1111256666678899999965421 1          11222221 225777


Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCc-----------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018        462 MELRNNILVSGNADSTVKVWDIVSGQ-----------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       462 ~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      ++......+.-..||.|+.|-.....           ....+..  .....|..++......+....||.|+.|=...
T Consensus       270 v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          270 VECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATGSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence            77767766777899999999754211           1111111  12245777888766777778899999998764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=81.72  E-value=33  Score=31.85  Aligned_cols=150  Identities=11%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             cEEEEECCCC--ceeEEecCCC---cccccEEEEEec---------CCEEEEEe-CCCcEEEEECCCCceeeeeccceec
Q psy18018        477 TVKVWDIVSG--QCLQTLSGRN---KHQSAVTCLQFN---------SRFVITSS-DDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       477 ~i~iwd~~~~--~~~~~~~~~~---~~~~~v~~~~~~---------~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      +|.+||+.+.  +.++.+..+.   ...+.+..+.+|         +.+...+. ..+-|.|+|+.+++.-+........
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4667788777  7776665421   123456667665         23433333 4677999999998866655332222


Q ss_pred             Ccee-------EEeccCceecccccCC----CeEEEEecCCCeEEEEeCCC-----CceEEeeeeccCCCCCceEEEEEe
Q psy18018        542 NPFY-------FLIYSQPLLCPHLQFN----SRFVITSSDDGTVKLWDVKT-----GEFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       542 ~~~~-------~~~~~~~v~~~~~s~~----~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                      ....       .......+..+++||+    ++.|.-..-.+ -++|.+++     ......+..+...+..+.-..++.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence            2111       1122457889999998    67666554443 23443322     221111211111121233445667


Q ss_pred             C-CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        606 S-ETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       606 s-~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      . .+|.+..+--+...    |..||.+
T Consensus       283 D~~~G~ly~~~~~~~a----I~~w~~~  305 (381)
T 3q6k_A          283 DPKTKVIFFAEANTKQ----VSCWNTQ  305 (381)
T ss_dssp             CTTTCEEEEEESSSSE----EEEEETT
T ss_pred             eCCCCeEEEEeccCCe----EEEEeCC
Confidence            5 67776666666665    6666654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=81.66  E-value=33  Score=31.67  Aligned_cols=110  Identities=13%  Similarity=0.030  Sum_probs=50.9

Q ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCC----CcccccEEEEEec-----CCEEEEEe-C-------CC
Q psy18018        459 TSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGR----NKHQSAVTCLQFN-----SRFVITSS-D-------DG  519 (635)
Q Consensus       459 v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~-----~~~l~~~~-~-------d~  519 (635)
                      ..+|.+  +++.++++...|.|++++.. +.....+...    .........++++     +..|+... .       ..
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            345665  45525556678999999853 3322112110    1123345678874     34444332 2       23


Q ss_pred             cEEEEECCCCc-eeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        520 TVKLWDVKTGE-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       520 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      .|..|++..+. .+.....-....+.. ....+.-..++|.|||.+.++.+.
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKL-STGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCC-BSSSCCCCCEEECSSSEEEEEECC
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCC-CCCcccCccEEECCCCcEEEEECC
Confidence            46666665331 111100000000000 001122467999999987776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	635
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-40
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-34
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-29
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-30
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-25
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-23
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-12
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-22
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-22
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-13
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-14
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-14
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	9e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (372), Expect = 3e-40
 Identities = 138/332 (41%), Positives = 187/332 (56%), Gaps = 60/332 (18%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS---------- 398
            QF G  +VSGS D +++VW A +G    TL+GH       ++R+NI++S          
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 399 ------------------------------GNADSTVKVWDIVSGTKKLMF-------RI 421
                                         G+ D+T++VWDI +G    +        R 
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVW 481
             +DG  VVSG+ D  ++VW+ E+    HTL GH +    ++     +VSG+ D++++VW
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202

Query: 482 DIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
           D+ +G C+ TL+G   HQS  + ++     +++ + D TVK+WD+KTG+           
Sbjct: 203 DVETGNCIHTLTG---HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC---------- 249

Query: 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVW 601
                           LQFN  FVITSSDDGTVKLWD+KTGEFIRNLV+L+SGGSGGVVW
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 602 RIRASETKLVCAVGSRNGTEETKLLVLDFDVD 633
           RIRAS TKLVCAVGSRNGTEETKLLVLDFDVD
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 2e-34
 Identities = 133/408 (32%), Positives = 180/408 (44%), Gaps = 80/408 (19%)

Query: 127 WHIESGECLHVLVGHLAAVR-CVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVE 185
           W     +   VL GH   V  C+Q+ G                                 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGN-------------------------------- 28

Query: 186 LSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTL 245
                    RIVSGSDDNTLKVWSA TGKCLRTL+GHTGGVWSSQM  NIIISGSTDRTL
Sbjct: 29  ---------RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 79

Query: 246 KGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL 305
           K W+             +     +    + +    +   + +   E    +   +     
Sbjct: 80  KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139

Query: 306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI 365
           +R  Q           + + +    E  T     + H   ++  QFDG+HVVSGSLDTSI
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI 199

Query: 366 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD 425
           RVW+ E+GN  HTL GHQSLTSGMEL++NILVSGNADSTVK+WDI +G      +     
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP--- 256

Query: 426 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS 485
                                        HQS  + ++   N +++ + D TVK+WD+ +
Sbjct: 257 ---------------------------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289

Query: 486 GQCLQTLSGRNK--HQSAVTCLQF--NSRFVITSSDDGT----VKLWD 525
           G+ ++ L           V  ++           S +GT    + + D
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 2e-29
 Identities = 110/375 (29%), Positives = 165/375 (44%), Gaps = 68/375 (18%)

Query: 65  WRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLV-SGSRDAT 123
           WR   +K PKVLKGHDDHVITCLQF G+RIVSGSDDNTLKVWSA TGKCL    G     
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 124 LRV------------------WHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVK 165
                                W+ E+GEC+H L GH + VRC+    K VVSG+ D  ++
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 166 IWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225
           +W+ +T +C    L      +        R+VSG+ D  +KVW   T  CL TL GHT  
Sbjct: 121 VWDIETGQC-LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 226 VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285
           V+S Q  G  ++SGS D +++ W            +++          Q +         
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWD-----------VETGNCIHTLTGHQSL--------- 219

Query: 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345
                            +++L +     + +       +W  K  +     +    H   
Sbjct: 220 ----------TSGMELKDNILVSGNADSTVK-------IWDIKTGQCLQTLQGPNKHQSA 262

Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-------NNILVS 398
           +   QF+   V++ S D ++++W+ ++G     L+  +S  SG  +          +   
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322

Query: 399 GNADST----VKVWD 409
           G+ + T    + V D
Sbjct: 323 GSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 3e-20
 Identities = 110/259 (42%), Positives = 142/259 (54%), Gaps = 35/259 (13%)

Query: 10  WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
           WR   +K PKVLKGHDDHVITCLQF G        I S S          ++++ W    
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGN------RIVSGS-------DDNTLKV-WSAVT 46

Query: 70  IKDPKVLKGHDDHVITCLQFSGSRIVSGSD-------------------DNTLKVWSATT 110
            K  + L GH   V    Q   + I+SGS                     +T  V     
Sbjct: 47  GKCLRTLVGHTGGV-WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105

Query: 111 GKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPD 170
            +  +VSGSRDATLRVW IE+G+CLHVL+GH+AAVRCVQYDG+ VVSGAYD+MVK+W+P+
Sbjct: 106 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165

Query: 171 TEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ 230
           TE CLH  LQ     +         +VSGS D +++VW   TG C+ TL GH       +
Sbjct: 166 TETCLH-TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 231 MAGNIIISGSTDRTLKGWS 249
           +  NI++SG+ D T+K W 
Sbjct: 225 LKDNILVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 1e-17
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 29/272 (10%)

Query: 4   RSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEI 63
            S ++                 +        +                + +  S  +   
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 64  NWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL--------- 114
            W     +   VL GH   V  C+Q+ G R+VSG+ D  +KVW   T  CL         
Sbjct: 121 VWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 115 ----------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMV 164
                     +VSGS D ++RVW +E+G C+H L GH +    ++    ++VSG  D  V
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTV 239

Query: 165 KIWNPDTEECLHAELQETEVELSHGYA--LRSRIVSGSDDNTLKVWSATTGKCLRTLI-- 220
           KIW+  T +CL       + + +       ++ +++ SDD T+K+W   TG+ +R L+  
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 221 ---GHTGGVWSSQMA--GNIIISGSTDRTLKG 247
              G  G VW  + +    +   GS + T + 
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (300), Expect = 1e-30
 Identities = 67/336 (19%), Positives = 119/336 (35%), Gaps = 52/336 (15%)

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER 253
           S +VS S+D T+KVW   TG   RTL GHT  V       +  +  S    +       +
Sbjct: 30  SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89

Query: 254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR 313
                + +   +       +                                +       
Sbjct: 90  GFECIRTMHGHDHNVSSVSI--------------------------------MPNGDHIV 117

Query: 314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG 373
           S        +   +      T   +       +     DG  + S S D ++RVW   + 
Sbjct: 118 SASRDKTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175

Query: 374 NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS 433
             +  L  H+ +   +                  +  +S       +     G  ++SGS
Sbjct: 176 ECKAELREHRHVVECISWAPE-----------SSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQT 491
            D +I++W+  +G    TL+GH +   G+        ++S   D T++VWD  + +C++T
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 284

Query: 492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
           L+    H+  VT L F   + +V+T S D TVK+W+
Sbjct: 285 LNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 77/354 (21%), Positives = 131/354 (37%), Gaps = 46/354 (12%)

Query: 64  NWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDAT 123
            W  RP  +   L GH   V T + F           +            ++VS S DAT
Sbjct: 2   EWIPRP-PEKYALSGHRSPV-TRVIFH-------PVFS------------VMVSASEDAT 40

Query: 124 LRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETE 183
           ++VW  E+G+    L GH  +V+ + +D    +  +    + I   D +           
Sbjct: 41  IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 100

Query: 184 VELSHGYALR---SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIIS 238
                  ++      IVS S D T+K+W   TG C++T  GH   V   +    G +I S
Sbjct: 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160

Query: 239 GSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF-ISLLPRELALYVL 297
            S D+T++ W  A            C+     H   +    +  +   S +         
Sbjct: 161 CSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEATGSETK 211

Query: 298 TFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVV 357
              +P   L +    ++ +            CL     H N    V     F   G  ++
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGHDNWVRGV----LFHSGGKFIL 263

Query: 358 SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 409
           S + D ++RVW+ ++     TL  H+   + ++       +V+G+ D TVKVW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.1 bits (240), Expect = 1e-22
 Identities = 59/304 (19%), Positives = 111/304 (36%), Gaps = 48/304 (15%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-----------LTSGMELRNNILV 397
           F      +VS S D +I+VW+ E+G+   TL GH                     +  + 
Sbjct: 25  FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84

Query: 398 SGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
             +      +  +      +     + +G H+VS S D +I++WE ++G    T  GH+ 
Sbjct: 85  LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144

Query: 458 LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT------------ 503
               +       ++ S + D TV+VW + + +C   L         ++            
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204

Query: 504 -------CLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556
                         F+++ S D T+K+WDV TG     L+            +   +   
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----------HDNWVRGV 253

Query: 557 HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS 616
                 +F+++ +DD T+++WD K    ++ L           V  +   +T      GS
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-----AHEHFVTSLDFHKTAPYVVTGS 308

Query: 617 RNGT 620
            + T
Sbjct: 309 VDQT 312

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.7 bits (239), Expect = 2e-22
 Identities = 72/379 (18%), Positives = 125/379 (32%), Gaps = 68/379 (17%)

Query: 206 KVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDS 263
           K W          L GH   V         ++++S S D T+K W         G    +
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-----YETGDFERT 54

Query: 264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL 323
            +           +                                         A+  +
Sbjct: 55  LKGHTDSVQDISFDHSG-------------------------------KLLASCSADMTI 83

Query: 324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 383
              +          +   H         +G H+VS S D +I++WE ++G    T  GH+
Sbjct: 84  KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 143

Query: 384 SLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW 441
                +       ++ S + D TV+VW + +   K   R                   + 
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-----------EHRHVVECIS 192

Query: 442 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA 501
            A   +         S T         L+SG+ D T+K+WD+ +G CL TL G   H + 
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNW 249

Query: 502 VTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
           V  + F    +F+++ +DD T+++WD K       L +           +   +      
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-----------HEHFVTSLDFH 298

Query: 560 FNSRFVITSSDDGTVKLWD 578
             + +V+T S D TVK+W+
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.0 bits (237), Expect = 2e-22
 Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 5/230 (2%)

Query: 24  HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDD-H 82
                       G      S     +    +  S       W  +     K   GH +  
Sbjct: 87  DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146

Query: 83  VITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLV-SGSRDATLRVWHIESGECLHVLVGH 141
            +      G+ I S S+D T++VW   T +C       R     +          +    
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 142 LAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGS 200
            +  +     G  ++SG+ D  +K+W+  T  CL      +  V     ++    I+S +
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW 248
           DD TL+VW     +C++TL  H   V S         +++GS D+T+K W
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 1e-16
 Identities = 70/288 (24%), Positives = 110/288 (38%), Gaps = 61/288 (21%)

Query: 9   NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTR 68
            W  RP  +   L GH   V T + F     P  S + S+S          ++++ W   
Sbjct: 2   EWIPRP-PEKYALSGHRSPV-TRVIFH----PVFSVMVSAS-------EDATIKV-WDYE 47

Query: 69  PIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC--------------- 113
                + LKGH D V         ++++    +         G                 
Sbjct: 48  TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107

Query: 114 -------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
                   +VS SRD T+++W +++G C+    GH   VR V+   DG L+ S + D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 165 KIWNPDTEECLH---------------------AELQETEVELSHGYALRSRIVSGSDDN 203
           ++W   T+EC                       +  + T  E          ++SGS D 
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 204 TLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
           T+K+W  +TG CL TL+GH   V        G  I+S + D+TL+ W 
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 1e-25
 Identities = 86/341 (25%), Positives = 135/341 (39%), Gaps = 82/341 (24%)

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER 253
            +IVSG  DNT+K+W   T +C R L GHTG V   Q    +II+GS+D T++ W     
Sbjct: 26  QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 85

Query: 254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR 313
            +    +        +R    ++    +   I++                          
Sbjct: 86  EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV-------------------------- 119

Query: 314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG 373
                      W        TL R    H   +    FD  ++VS S D +I+VW   + 
Sbjct: 120 -----------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC 168

Query: 374 NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS 433
               TL GH+   + ++ R+ ++VSG++D+T+++WDI                       
Sbjct: 169 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI----------------------- 205

Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG------- 486
                     E G     L GH+ L   +   N  +VSG  D  +KVWD+V+        
Sbjct: 206 ----------ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 487 --QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWD 525
              CL+TL     H   V  LQF+   +++SS D T+ +WD
Sbjct: 256 GTLCLRTLVE---HSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 4e-23
 Identities = 65/287 (22%), Positives = 126/287 (43%), Gaps = 57/287 (19%)

Query: 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----------------- 384
               ++  Q+D   +VSG  D +I++W+  +   +  L GH                   
Sbjct: 14  TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSS 73

Query: 385 -----------------------LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421
                                      +   N ++V+ + D ++ VWD+ S T   + R+
Sbjct: 74  DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 133

Query: 422 ----------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS 471
                       FD  ++VS S D +I+VW   +     TL GH+   + ++ R+ ++VS
Sbjct: 134 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 193

Query: 472 GNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF 531
           G++D+T+++WDI  G CL+ L G  +      C++F+++ +++ + DG +K+WD+     
Sbjct: 194 GSSDNTIRLWDIECGACLRVLEGHEELV---RCIRFDNKRIVSGAYDGKIKVWDLVAALD 250

Query: 532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD 578
                 +  L       +S  +    LQF+   +++SS D T+ +WD
Sbjct: 251 PRAPAGTLCLRTLVE--HSGRVFR--LQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 4e-20
 Identities = 56/254 (22%), Positives = 90/254 (35%), Gaps = 16/254 (6%)

Query: 10  WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
           W    ++  ++L GH   V+             S                ++  +     
Sbjct: 40  WDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 99

Query: 70  IKDPKVLKGHDDH------VITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDAT 123
                              V      +   +      +   V         +VS S D T
Sbjct: 100 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 159

Query: 124 LRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETE 183
           ++VW+  + E +  L GH   + C+QY  +LVVSG+ D  +++W+ +   CL       E
Sbjct: 160 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219

Query: 184 VELSHGYALRSRIVSGSDDNTLKVWSATTG---------KCLRTLIGHTGGVWSSQMAGN 234
           +          RIVSG+ D  +KVW               CLRTL+ H+G V+  Q    
Sbjct: 220 LV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278

Query: 235 IIISGSTDRTLKGW 248
            I+S S D T+  W
Sbjct: 279 QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (211), Expect = 4e-19
 Identities = 60/319 (18%), Positives = 110/319 (34%), Gaps = 54/319 (16%)

Query: 74  KVLKGHDDHV--ITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIES 131
           + +    +    + CLQ+   +IVSG  DNT+K+W   T +C  +      ++     + 
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 132 GECLHVLVGHLAAVRCVQYDGKLVVSGAYDYM-------------------VKIWNPDTE 172
              +         V  V     L     +                      + +W+  + 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 173 ECLHAE--LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ 230
             +     L      ++        IVS S D T+KVW+ +T + +RTL GH  G+   Q
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 231 MAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR 290
               +++SGS+D T++ W            I+     ++    + +    + D   ++  
Sbjct: 186 YRDRLVVSGSSDNTIRLWD-----------IECGACLRVLEGHEELVRCIRFDNKRIVSG 234

Query: 291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ 350
                                 + W  +A  +       L   TL      H   +F  Q
Sbjct: 235 ----------------AYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQ 274

Query: 351 FDGVHVVSGSLDTSIRVWE 369
           FD   +VS S D +I +W+
Sbjct: 275 FDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 5e-12
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 29/148 (19%)

Query: 49  SPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSA 108
                +  S       W T   +  + L GH   +    Q+    +VSGS DNT+++W  
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL-QYRDRLVVSGSSDNTIRLWDI 205

Query: 109 TTGKCL-------------------LVSGSRDATLRVWHIESGE---------CLHVLVG 140
             G CL                   +VSG+ D  ++VW + +           CL  LV 
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265

Query: 141 HLAAVRCVQYDGKLVVSGAYDYMVKIWN 168
           H   V  +Q+D   +VS ++D  + IW+
Sbjct: 266 HSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE 530
             LQ +  R++    V CLQ++ + +++   D T+K+WD  T E
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE 46

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 9e-09
 Identities = 45/168 (26%), Positives = 88/168 (52%), Gaps = 14/168 (8%)

Query: 422 CL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKV 480
           CL +D   +VSG  D +I++W+  +   +  L GH      ++    ++++G++DSTV+V
Sbjct: 20  CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79

Query: 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540
           WD+ +G+ L TL    +       L+FN+  ++T S D ++ +WD          M+S  
Sbjct: 80  WDVNTGEMLNTLIHHCEAV---LHLRFNNGMMVTCSKDRSIAVWD----------MASPT 126

Query: 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
                 ++         + F+ ++++++S D T+K+W+  T EF+R L
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 5e-24
 Identities = 63/397 (15%), Positives = 125/397 (31%), Gaps = 69/397 (17%)

Query: 157 SGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRS--------RIVSGSDDNTLKVW 208
               +    ++NP     +  EL ++   L H   +           + +G +  T +V+
Sbjct: 33  KKQTNDYYILYNPALPREIDVELHKS---LDHTSVVCCVKFSNDGEYLATGCNK-TTQVY 88

Query: 209 SATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLK-GWSNAERILAIGQLIDSCEPT 267
             + G  +  L   +      +         S        +S   + LA G         
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 268 QIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE 327
            I +   ++  Q     I  L                        +      +  +   +
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYF-----------------PSGDKLVSGSGDRTVRIWD 191

Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS 387
                 +L  + +  V  +     DG ++ +GSLD ++RVW++E+G L   L       +
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251

Query: 388 GMELR---------NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSI 438
           G +              +VSG+ D +VK+W++ +   K   +                  
Sbjct: 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT----------------- 294

Query: 439 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
               + +  + +       L+      +  ++SG+ D  V  WD  SG  L  L G   H
Sbjct: 295 --PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG---H 349

Query: 499 QSAVTCLQF--------NSRFVITSSDDGTVKLWDVK 527
           +++V  +                T S D   ++W  K
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 2e-17
 Identities = 49/249 (19%), Positives = 72/249 (28%), Gaps = 37/249 (14%)

Query: 24  HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV 83
            ++  I  +    +          S          R+V I           +        
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209

Query: 84  ITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLA 143
           +      G  I +GS D  ++VW + TG                            GH  
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFL--------------VERLDSENESGTGHKD 255

Query: 144 AVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRS------- 194
           +V  V +  DG+ VVSG+ D  VK+WN                     Y           
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 195 ------RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--------GNIIISGS 240
                  I+SGS D  +  W   +G  L  L GH   V S  +A         N+  +GS
Sbjct: 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 241 TDRTLKGWS 249
            D   + W 
Sbjct: 376 GDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (194), Expect = 2e-16
 Identities = 73/404 (18%), Positives = 141/404 (34%), Gaps = 52/404 (12%)

Query: 33  QFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLK-------GHDDHVIT 85
           Q +  S P   F+             +     +       P+ +         H   V+ 
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS-VVC 66

Query: 86  CLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLA 143
           C++FS  G  + +G +  T +V+  + G  +       A  +     +            
Sbjct: 67  CVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNT---SSSPSSDL 122

Query: 144 AVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL-RSRIVSGS 200
            +R V +  DGK + +GA D +++IW+ +  + +       +   S  Y     ++VSGS
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182

Query: 201 DDNTLKVWSATTGKCLRTLIGHTGGVWS--SQMAGNIIISGSTDRTLKGWSNAERILAIG 258
            D T+++W   TG+C  TL    G      S   G  I +GS DR ++ W +    L   
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--- 239

Query: 259 QLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFL 318
                               +   +  S    + ++Y + F +    + +    RS +  
Sbjct: 240 ------------------VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 319 AEDNLLWREKCLEAATLHRNKKTHVPDLF----GFQFDGVHVVSGSLDTSIRVWEAESGN 374
              N   +       +            F        +  +++SGS D  +  W+ +SGN
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341

Query: 375 LRHTLMGHQSLTSGMELRN--------NILVSGNADSTVKVWDI 410
               L GH++    + + N        N+  +G+ D   ++W  
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 6e-16
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 40/311 (12%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--------------- 393
           F  DG ++ +G  + + +V+    G+L   L    +     E  N               
Sbjct: 70  FSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 128

Query: 394 -----NILVSGNADSTVK---------VWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439
                  L +G  D  ++         V  +    + +        G  +VSGS D ++R
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188

Query: 440 VWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497
           +W+  +G    TL     +T+          + +G+ D  V+VWD  +G  ++ L   N+
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248

Query: 498 ----HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF-ILNPFYFLIYS 550
               H+ +V  + F  + + V++ S D +VKLW+++     +   +         ++ + 
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG-GSGGVVWRIRASETK 609
             +L      N  ++++ S D  V  WD K+G  +  L    +   S  V          
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 610 LVCAVGSRNGT 620
            V A GS +  
Sbjct: 369 NVFATGSGDCK 379

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 37/153 (24%)

Query: 10  WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSS---PWKALFMSHRSVEINWR 66
              R   + +   GH D V   + F+         + S S     K   + + + + + +
Sbjct: 239 LVERLDSENESGTGHKDSV-YSVVFT----RDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

Query: 67  TRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL---------- 114
           T      +V        +  +  +     I+SGS D  +  W   +G  L          
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353

Query: 115 -----------------LVSGSRDATLRVWHIE 130
                              +GS D   R+W  +
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.7 bits (239), Expect = 2e-22
 Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 49/328 (14%)

Query: 214 KCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAE---------RILAIGQLID 262
           +  RTL GH   +++        +++S S D  L  W +           R   +     
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 263 SCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN 322
           +     +                      ++  +          R     +      +  
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 323 LLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH 382
               +      T      T          D    VSG+ D S ++W+   G  R T  GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 383 QSLTSGMEL--RNNILVSGNADSTVKV-WDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439
           +S  + +      N   +G+ D+T ++                +  G+  VS S      
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS---- 281

Query: 440 VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499
                                       +L++G  D    VWD +       L+G   H 
Sbjct: 282 --------------------------GRLLLAGYDDFNCNVWDALKADRAGVLAG---HD 312

Query: 500 SAVTCLQF--NSRFVITSSDDGTVKLWD 525
           + V+CL    +   V T S D  +K+W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.0 bits (237), Expect = 4e-22
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 113 CLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD 170
            L VSG+ DA+ ++W +  G C     GH + +  + +  +G    +G+ D   ++++  
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 171 TEECLHAELQETEVELSHGYALR---SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227
            ++ L     +  +      +       +++G DD    VW A        L GH   V 
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 228 SSQMA--GNIIISGSTDRTLKGWS 249
              +   G  + +GS D  LK W+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 35/290 (12%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVK 406
           +  D   +VS S D  + +W++ + N  H +    S           N +  G  D+   
Sbjct: 63  WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122

Query: 407 VWDIVS------------GTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG 454
           ++++ +            G    +      D   +V+ S DT+  +W+ E+G    T  G
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG 182

Query: 455 HQS--LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSR 510
           H    ++  +     + VSG  D++ K+WD+  G C QT +G   H+S +  + F  N  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG---HESDINAICFFPNGN 239

Query: 511 FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570
              T SDD T +L+D++  +         I+     + +S+         + R ++   D
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---------SGRLLLAGYD 290

Query: 571 DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
           D    +WD    +    L      G    V  +  ++  +  A GS +  
Sbjct: 291 DFNCNVWDALKADRAGVLA-----GHDNRVSCLGVTDDGMAVATGSWDSF 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (195), Expect = 9e-17
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 16/165 (9%)

Query: 418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNAD 475
           M      D    VSG+ D S ++W+   G  R T  GH+S  + +      N   +G+ D
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247

Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFST 533
           +T +++D+ + Q L T    +     +T + F  + R ++   DD    +WD    + + 
Sbjct: 248 ATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD 578
            L             +   + C  +  +   V T S D  +K+W+
Sbjct: 307 VLAG-----------HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 37/163 (22%)

Query: 10  WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
           W  R     +   GH+  +   + F     P  +   + S          +  +      
Sbjct: 211 WDVREGMCRQTFTGHESDI-NAICFF----PNGNAFATGS-------DDATCRLFDLRAD 258

Query: 70  IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVW 127
            +       +    IT + FS  G  +++G DD                         VW
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF---------------------NCNVW 297

Query: 128 HIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
                +   VL GH   V C+    DG  V +G++D  +KIWN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 7e-12
 Identities = 49/331 (14%), Positives = 98/331 (29%), Gaps = 66/331 (19%)

Query: 69  PIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL------------ 114
            ++  + L+GH   +   + +      +VS S D  L +W + T   +            
Sbjct: 44  QMRTRRTLRGHLAKI-YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102

Query: 115 ---------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVK 165
                    +  G  D    ++++++ E    +   LA         + +          
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162

Query: 166 IWNPDTEECLHAELQET------EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
                  +    +   T      +V            VSG+ D + K+W    G C +T 
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 220 IGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277
            GH   + +      GN   +GS D T + +                   +    +    
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLF-----------------DLRADQELMTYS 265

Query: 278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHR 337
                  I+          ++F +   LL A     +                     H 
Sbjct: 266 HDNIICGIT---------SVSFSKSGRLLLAGYDDFNCNVWDALK----ADRAGVLAGHD 312

Query: 338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW 368
           N+ + +    G   DG+ V +GS D+ +++W
Sbjct: 313 NRVSCL----GVTDDGMAVATGSWDSFLKIW 339

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 2e-22
 Identities = 54/65 (83%), Positives = 62/65 (95%)

Query: 267 TQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR 326
           TQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P+DLL+AAQTCR WR LAEDNLLWR
Sbjct: 1   TQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60

Query: 327 EKCLE 331
           EKC E
Sbjct: 61  EKCKE 65

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.2 bits (240), Expect = 3e-22
 Identities = 60/393 (15%), Positives = 104/393 (26%), Gaps = 28/393 (7%)

Query: 70  IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHI 129
           I      K HD  +   +    S  VS S D  LKVW            +         +
Sbjct: 4   IATANAGKAHDADI-FSVSACNSFTVSCSGDGYLKVWDNKLLDN----ENPKDKSYSHFV 58

Query: 130 ESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL--- 186
                 HV V    A+    ++  LV + ++   +  +    E+     + E    L   
Sbjct: 59  HKSGLHHVDVLQ--AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD 116

Query: 187 -------------SHGYALRSRIVSGSDDNTLKVWSA-TTGKCLRTLIGHTGGVWSSQMA 232
                        S+   L  R+V+     T  +W          +L  +       Q  
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 233 GNIIISGSTDRTLKGWSNAERILAIGQ----LIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
               ++ S   T    S    I          I      +  +  +              
Sbjct: 177 VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348
            +      L  +  +       T     F      L        A+L     +       
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVW 408
           F   G  + S   D  +R W+ ++     TL  H       E    +   G++ +   V+
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF 356

Query: 409 DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW 441
           D+    K     +       +    LD SIR +
Sbjct: 357 DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 1e-14
 Identities = 47/408 (11%), Positives = 103/408 (25%), Gaps = 68/408 (16%)

Query: 134 CLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQ------------- 180
             +    H A +  V       VS + D  +K+W+    +  + + +             
Sbjct: 6   TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 181 -ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISG 239
            +    +         + + S    L  +  T     + +I     +  S M  +   + 
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 240 STDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF 299
                   W  +   L   +L+ +                                    
Sbjct: 126 K-------WGASNDRLLSHRLVATDVKGTTYIWK-------------------------- 152

Query: 300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG 359
                         +   L     L  +  +E+        T V         G+ + +G
Sbjct: 153 ------FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV----DISERGL-IATG 201

Query: 360 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF 419
             + ++++ E  +    +      S    M   +N + S        +  I   +     
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHS----MINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257

Query: 420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVK 479
                       GSL       +A  G   H+        +        L S   D  ++
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS---GETLCSAGWDGKLR 314

Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK 527
            WD+ + + + TL+    H   +   +                ++DVK
Sbjct: 315 FWDVKTKERITTLNM---HCDDIEIEEDILAVDEHGDSLAEPGVFDVK 359

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 7e-12
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF--ILNPFYF 546
           + T +    H + +  +   + F ++ S DG +K+WD K  +   P   S+   ++    
Sbjct: 4   IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
                        F    V T+S  G +  + +   +  + +
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 34/309 (11%), Positives = 96/309 (31%), Gaps = 45/309 (14%)

Query: 310 QTCRSWRFLAEDNLLWREKCLE--AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367
              + W     DN   ++K           +    +  +    F+   V + S    +  
Sbjct: 34  GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 93

Query: 368 WEAESGNLRHTLMGHQS-----------------LTSGMELRNNILVSGNADSTVKVWDI 410
           +     +    ++  +                    S   L ++ LV+ +   T  +W  
Sbjct: 94  YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153

Query: 411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNIL 469
                +       +     + G++                + M      + +++    ++
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTV---------------ESPMTPSQFATSVDISERGLI 198

Query: 470 VSGNADSTVKVWD---IVSGQCLQTLSGRNKHQSAVTCLQFNSRFVI--TSSDDGTVKLW 524
            +G  + TV++ +   +      ++      + +++  ++F+ +  +   + D  +    
Sbjct: 199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258

Query: 525 DVKTGEFSTPLMSSFILNP-----FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
            +   EF   + S  +             +S  ++      +   + ++  DG ++ WDV
Sbjct: 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318

Query: 580 KTGEFIRNL 588
           KT E I  L
Sbjct: 319 KTKERITTL 327

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 5e-10
 Identities = 35/305 (11%), Positives = 75/305 (24%), Gaps = 61/305 (20%)

Query: 377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL------------- 423
           +    H +    +   N+  VS + D  +KVWD      +                    
Sbjct: 8   NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 424 ---------FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----------------- 457
                    F+   V + S    +  +     +    ++  +                  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 458 LTSGMELRNNILVSGNADSTVKVWDIVSGQCL---------------QTLSGRNKHQSAV 502
             S   L ++ LV+ +   T  +W                        T+          
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 503 TCLQFNSR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN 561
           T +  + R  + T  ++GTV++ ++ T        S   +      I S           
Sbjct: 188 TSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 562 S------RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615
                     IT  +    +     +     +  SL        V  +  +++       
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 616 SRNGT 620
             +G 
Sbjct: 308 GWDGK 312

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 6e-07
 Identities = 24/267 (8%), Positives = 64/267 (23%), Gaps = 30/267 (11%)

Query: 10  WRTRPIKDPKVLKGHDDHVIT-----------CLQFSGKSFPCESFIRSSSPWKALFMSH 58
           +R     + K +      ++                S         + +           
Sbjct: 94  YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153

Query: 59  RSVEINWRTRPIKDPKVLKGHDDHV--------ITCLQFSG-SRIVSGSDDNTLKVWSAT 109
                   +  +     L+               T +  S    I +G ++ T+++   +
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELS 213

Query: 110 TGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYD-------Y 162
           T + L    S+ + +   +              + +              Y+        
Sbjct: 214 TLRPLYNFESQHSMINNSNSIRSVKFSP---QGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 163 MVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGH 222
            + +    ++  L      + V           + S   D  L+ W   T + + TL  H
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 223 TGGVWSSQMAGNIIISGSTDRTLKGWS 249
              +   +    +   G +      + 
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.8 bits (231), Expect = 2e-21
 Identities = 67/368 (18%), Positives = 114/368 (30%), Gaps = 54/368 (14%)

Query: 75  VLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGEC 134
            L+GH   VITCLQF  + +++G+DD  ++V+ +   K                      
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK---------------------F 45

Query: 135 LHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEV---ELSHGY 190
           L  L GH   V  ++Y  G ++VSG+ D  V++W+     C H                Y
Sbjct: 46  LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105

Query: 191 ALRSRIVSGSDDNTLKVWSATTGKCLRTLIG-----------------------HTGGVW 227
                IV+GS DNTL VW       +                            H   V 
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

Query: 228 SSQMAGNIIISGSTDRTLKGWS---NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF 284
           +    GNI++SGS D TL  W         +  G               + I        
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225

Query: 285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP 344
                    L          +     + +     A D  +      + +       T++ 
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMEL-RNNILVSGNAD 402
            +  F      +VSGS +    ++   SG  +   ++        +      ++ +   D
Sbjct: 286 AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 344

Query: 403 STVKVWDI 410
               +  +
Sbjct: 345 GQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.7 bits (184), Expect = 2e-15
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 70/344 (20%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKV 407
            QF+  +V++G+ D  IRV+++ +      L GH      ++     ILVSG+ D TV+V
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78

Query: 408 WDIVSG-----------TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL---- 452
           WDI  G           T + +  +   +  ++V+GS D ++ VW+    +         
Sbjct: 79  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138

Query: 453 -------------------MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS 493
                               GH +    +    NI+VSG+ D+T+ VWD+   +CL  LS
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198

Query: 494 GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL 553
           G      +        +  I++S D T+++WD++ GE    L     L     L     +
Sbjct: 199 GHTDRIYSTIY-DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLV 257

Query: 554 LCPHLQF---------------------------NSRFVITSSDDGTVKLWDVKTGEFIR 586
                                              S  ++ S  +    ++++++G+ + 
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 317

Query: 587 NLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630
             +          +W +      LV A   ++G   + L +LDF
Sbjct: 318 ANIL----KDADQIWSVNFKGKTLVAA-VEKDGQ--SFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 36/131 (27%)

Query: 491 TLSGRNKHQSAV-TCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPL-------------- 535
           TL G   H ++V TCLQF   +VIT +DD  ++++D    +F   L              
Sbjct: 7   TLRG---HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 536 ------------------MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577
                                   + F     +   L      N ++++T S D T+ +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 578 DVKTGEFIRNL 588
            +     + + 
Sbjct: 124 KLPKESSVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 376 RHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR--------ICLFDG 426
           R TL GH  S+ + ++  +N +++G  D  ++V+D ++    L           +    G
Sbjct: 5   RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 427 VHVVSGSLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD 482
             +VSGS D ++RVW+ +               + L          +V+G+ D+T+ VW 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 483 IVSGQCLQTLSGRNKHQSAVTCLQFNSRFVIT 514
           +     +      + +       + N  FV  
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 16/153 (10%), Positives = 37/153 (24%), Gaps = 26/153 (16%)

Query: 24  HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHR----SVEINWRTRPIKDPKVLKGH 79
            D  +      +G+         +      L         +             +    H
Sbjct: 221 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 280

Query: 80  DDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL 138
             ++     F     I+    +N   +++  +GK +                       +
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA--------------------NI 320

Query: 139 VGHLAAVRCVQYDGK-LVVSGAYDYMVKIWNPD 170
           +     +  V + GK LV +   D    +   D
Sbjct: 321 LKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 17/159 (10%), Positives = 51/159 (32%), Gaps = 2/159 (1%)

Query: 51  WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATT 110
              +   H     +      +   +    D  +      +G  + +      L      +
Sbjct: 193 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252

Query: 111 GKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPD 170
            K L+ + +  +       +          +L+A+        ++VSG+ +    I+N  
Sbjct: 253 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 311

Query: 171 TEECLHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVW 208
           + + +HA + +  +   S  +  ++ + +   D    + 
Sbjct: 312 SGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 44/194 (22%), Positives = 67/194 (34%), Gaps = 42/194 (21%)

Query: 20  VLKGHDDHVITCLQFSGK-----------------------------------SFPCESF 44
            L+GH   VITCLQF                                       +     
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 45  IRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLK 104
           + S S  + + +               +          +      +   IV+GS DNTL 
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNS-----TVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 105 VWSATTGKCLLVSGSRDATLRVWH--IESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDY 162
           VW       +   G       V+H   E+   + VL GH+A+VR V   G +VVSG+YD 
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 163 MVKIWNPDTEECLH 176
            + +W+    +CL+
Sbjct: 182 TLIVWDVAQMKCLY 195

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 40/414 (9%), Positives = 96/414 (23%), Gaps = 90/414 (21%)

Query: 116 VSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECL 175
              +      V   E+G  + ++ G       V  DG  +   +  +             
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVF------------- 68

Query: 176 HAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNI 235
                             SRI  G   + ++V+   T      +       +       +
Sbjct: 69  ------------------SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM 110

Query: 236 IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR--HMMQLIEPQFQRDFISLLPRELA 293
                  +TL  +  +         ++     ++        I P     F         
Sbjct: 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL 170

Query: 294 LYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG 353
             V    +    +   +                                + +   +    
Sbjct: 171 AKVAFGTEGTPEITHTEVFHPEDEF------------------------LINHPAYSQKA 206

Query: 354 VHVVSGSLDTSIRVWEAESGNLR----HTLMGHQSLTSGMELRNNILVSGNADSTVKVWD 409
             +V  +    I   +  SG+ +       +       G        V+ +         
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 266

Query: 410 IVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL----R 465
                        +         +    + V +A++G           + S + +    +
Sbjct: 267 -------------VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDS-INVSQDEK 312

Query: 466 NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG 519
             +      D T+ + D  SG+ L++++                  VIT++D G
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ-----------VITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 37/352 (10%), Positives = 80/352 (22%), Gaps = 51/352 (14%)

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG----------VWSSQMAGNIIISGSTDR 243
           +     +      V     G+ +  + G              +  +    + I  G    
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 244 TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE 303
            ++ +                +P  +     +  P   R  +   P   +L         
Sbjct: 79  YVEVF----------------DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF 122

Query: 304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVH-VVSGSLD 362
                A          +      +             T          DG    V+   +
Sbjct: 123 YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF----MHCRDGSLAKVAFGTE 178

Query: 363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC 422
            +  +   E  +     + +    S        LV       +   D+ SG  K +    
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQK---AGRLVWPTYTGKIHQIDLSSGDAKFL---- 231

Query: 423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD 482
                  V    +          G  +            +  + +      A   V V D
Sbjct: 232 -----PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286

Query: 483 IVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGE 530
             +G+ L       +    +  +             S+ D T+ + D ++GE
Sbjct: 287 AKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 9e-08
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 7/144 (4%)

Query: 91  GSRIVSGSDDNTLKVWSATTGKCLLV---SGSRDATLRVWHIESGECLHVLVGHLAAVRC 147
             R+V  +    +     ++G    +       +A         G         L  +  
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265

Query: 148 VQYDGKLVVSGAYDYMVKIWNPDTEECLH---AELQETEVELSHGYALRSRIVSGSDDNT 204
           +               V + +  T E L       +   + +S            + D T
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL-LYALSTGDKT 324

Query: 205 LKVWSATTGKCLRTLIGHTGGVWS 228
           L +  A +G+ LR++     G   
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQV 348

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 32/315 (10%), Positives = 70/315 (22%), Gaps = 44/315 (13%)

Query: 104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYM 163
            +  A+T    +  G R   + V+   +      +    A    V     +         
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 164 VKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT 223
           +  +                                S    + V         R L    
Sbjct: 120 LLFYQ------------------------------FSPAPAVGVVDLEGKAFKRMLDVPD 149

Query: 224 GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD 283
                   A +       D +L   +         ++  + E         +  P + + 
Sbjct: 150 CYHI-FPTAPDTFFMHCRDGSLAKVAFGTE--GTPEITHT-EVFHPEDEFLINHPAYSQK 205

Query: 284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV 343
              L+       +          +           AE    WR    +    HR      
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAV-EALTEAERADGWRPGGWQQVAYHRALDR-- 262

Query: 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL----RNNILVSG 399
             ++            +    + V +A++G           + S + +    +  +    
Sbjct: 263 --IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDS-INVSQDEKPLLYALS 319

Query: 400 NADSTVKVWDIVSGT 414
             D T+ + D  SG 
Sbjct: 320 TGDKTLYIHDAESGE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 42/322 (13%), Positives = 81/322 (25%), Gaps = 27/322 (8%)

Query: 111 GKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
           G+   V    DA +          ++ L  H   V  V      + V +G     VK+W+
Sbjct: 21  GQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78

Query: 169 PDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS 228
                      Q     L+    +RS       D    +            +        
Sbjct: 79  ISHPGNKSPVSQLDC--LNRDNYIRS--CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
           +++  +     +   +                +       +    Q          IS  
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194

Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLL----------------WREKCLEA 332
             +L    L        LR  +  +   F ++   L                  E     
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254

Query: 333 ATLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS-GM 389
                    H   +   +F   G   VS   D  +  W    G          S+ S  +
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 314

Query: 390 ELRNNILVSGNADSTVKVWDIV 411
            + +  +V+G+ D    V++++
Sbjct: 315 SVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 498 HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC 555
           H+S V  L+F    ++ +++  D  +  W    G               +    S  +L 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA------------SIFQSKESSSVLS 311

Query: 556 PHLQFNSRFVITSSDDGTVKLWDV 579
             +  + ++++T S D    +++V
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 17/244 (6%)

Query: 21  LKGHDDHVITCLQFS--GKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKG 78
               D+++    +    G +        + S W     + R       + P      +  
Sbjct: 93  CLNRDNYI-RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 79  HDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL 138
                 +C       +    +   ++ +   T     +  S D T               
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 139 VGHLAAVRCVQYDGK---LVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRS- 194
           +     ++   +  +   L      +++         E LH    +      H   + S 
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271

Query: 195 -------RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTL 245
                    VS   DN L  W    G  +      +  V S  ++     I++GS D+  
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 246 KGWS 249
             + 
Sbjct: 331 TVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 30/280 (10%), Positives = 81/280 (28%), Gaps = 17/280 (6%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-----MGHQSLTSGMELR--NNILVSGNA 401
                 HV +G     ++VW+      +  +     +   +     +L      L+ G  
Sbjct: 59  ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117

Query: 402 DSTVKVWDIVSGTKKLMFRI-CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS 460
            ST+ +WD+ + T ++   +       + ++ S D+ +       GN+    + +Q+L  
Sbjct: 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177

Query: 461 GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGT 520
             +   +     +  +                    + +        +  F +     G 
Sbjct: 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE 237

Query: 521 VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580
                +++       +     + +   ++   +L     +  ++ +++  D  +  W   
Sbjct: 238 WLAVGMESSNVEV--LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

Query: 581 TGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
            G  I              V     S        GS +  
Sbjct: 296 YGASIFQS------KESSSVLSCDISVDDKYIVTGSGDKK 329

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK 527
           V    D+ +        + + TL+    H   V  +     +R V T    G VK+WD+ 
Sbjct: 26  VPFPPDALIGPGIPRHARQINTLN----HGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80

Query: 528 TGEFSTPL 535
                +P+
Sbjct: 81  HPGNKSPV 88

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 3e-14
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 278 PQFQRDFISLLPR----ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC 329
              QRDFI+ LP      +A  +L++L  + L  A   C+ W  +  D +LW++  
Sbjct: 4   IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.2 bits (175), Expect = 4e-14
 Identities = 48/396 (12%), Positives = 107/396 (27%), Gaps = 57/396 (14%)

Query: 193 RSRIVSGSDDNTLKVWSATTGK--CLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW 248
           R++I    +++ + ++  +  K   +  L  H G V     A   N I++  TDR    W
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

Query: 249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA 308
           +   R     +                  P  ++  +    R +++          + + 
Sbjct: 79  TLKGRT---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 135

Query: 309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW 368
            +       L+ D                                    +GS D   R++
Sbjct: 136 IKKPIRSTVLSLDWHPNSVLL---------------------------AAGSCDFKCRIF 168

Query: 369 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428
            A    +          +           S +      V                 +G  
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-------------FSANGSR 215

Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME-LRNNILVSGNADSTVKVWDIVSGQ 487
           V   S D+++ + +A+      TL         +  +  + LV+   D    ++   S  
Sbjct: 216 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA 275

Query: 488 CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFL 547
              +  GR       +            +     +  D K     +    + + +     
Sbjct: 276 GKLSFGGRLDVPKQSSQ--------RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 327

Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
           +     +    +       T+  DG + +WDV++ E
Sbjct: 328 VSQI-SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.0 bits (164), Expect = 9e-13
 Identities = 43/408 (10%), Positives = 93/408 (22%), Gaps = 59/408 (14%)

Query: 84  ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH 141
           I+C  ++   ++I    +++ + ++  +  K                      +H L  H
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELKEH 50

Query: 142 LAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG 199
              V  V +  D   +V+   D    +W           +       +            
Sbjct: 51  NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 200 SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQ 259
           +  +  +V S    +               +     +        L   S   +      
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 260 LIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA 319
            I   E            P  +  F S         V        +   +         A
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 320 EDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL 379
           +  +       E   L                +   V +G  D    ++  +S   + + 
Sbjct: 231 DKKMAVATLASETLPLLAVTFIT---------ESSLVAAGH-DCFPVLFTYDSAAGKLSF 280

Query: 380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439
            G   +      R        A    +  D  + ++         D +H  S    + I 
Sbjct: 281 GGRLDVPKQSSQR-----GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV---SQIS 332

Query: 440 VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQ 487
           V                              +   D  + +WD+ S +
Sbjct: 333 VLSGGKAKCSQ------------------FCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 20/164 (12%), Positives = 47/164 (28%), Gaps = 12/164 (7%)

Query: 425 DGVHVVSGSLDTSIRVWEAESGNLR--HTLMGHQSLTSGMEL--RNNILVSGNADSTVKV 480
           D   +     +  + ++E         H L  H    +G++    +N +V+   D    V
Sbjct: 18  DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 77

Query: 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSF 539
           W +       TL     +++A       +            + +   +         + +
Sbjct: 78  WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-------ENDW 130

Query: 540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
            +           +L      NS  +   S D   +++     E
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 27/250 (10%), Positives = 54/250 (21%), Gaps = 37/250 (14%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLR--HTLMGHQSLTSGMEL--RNNILVSGNADST 404
           +  D   +     +  + ++E         H L  H    +G++    +N +V+   D  
Sbjct: 15  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74

Query: 405 VKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 464
             VW +   T K    I   +             +        +                
Sbjct: 75  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY----------- 123

Query: 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLW 524
                                    + +    +          NS  +   S D   +++
Sbjct: 124 ---------------FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

Query: 525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-------RFVITSSDDGTVKLW 577
                E       +   +   F              +          V   S D TV L 
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

Query: 578 DVKTGEFIRN 587
           D      +  
Sbjct: 229 DADKKMAVAT 238

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 11/83 (13%)

Query: 498 HQSAVTCLQFNS--RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC 555
               ++C  +N     +    ++  V +++    ++                 ++  +  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ---------VHELKEHNGQVTG 56

Query: 556 PHLQFNSRFVITSSDDGTVKLWD 578
                +S  ++T   D    +W 
Sbjct: 57  VDWAPDSNRIVTCGTDRNAYVWT 79

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.4 bits (173), Expect = 6e-14
 Identities = 32/367 (8%), Positives = 90/367 (24%), Gaps = 42/367 (11%)

Query: 153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL----RSRIVSGSDDNTLKVW 208
             +++ A    + + + +                     +    R    + +   +L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 209 SATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268
              TG+ L  +   T       + G   +S          S     L   ++  +     
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFG-AALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 269 IRHMMQLIEPQFQRDF---ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLW 325
               +   +          ++       LY L          A          + +   +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 326 RE-KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQ 383
            +   L     H +        +  + D       +  T +   + E+G +    +    
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA 443
                  +      +  A + ++ +D+       + R+ L    + V+ S D        
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKN--ASIKRVPLPHSYYSVNVSTD-------- 290

Query: 444 ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT 503
                                  + +  G A   +  +D  + +    +        ++ 
Sbjct: 291 ----------------------GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

Query: 504 CLQFNSR 510
            ++  +R
Sbjct: 329 SVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 37/415 (8%), Positives = 87/415 (20%), Gaps = 92/415 (22%)

Query: 193 RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN-----IIISGSTDRTLKG 247
           R  I++ +  + L V         + +     G                 + +   +L  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
                        + + E      +    E        +L P    L +       +L  
Sbjct: 61  ID-----------LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109

Query: 308 AAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367
                        + L  R+                  +    +         L   + V
Sbjct: 110 FEVQPTRVALYDAETLSRRKAF-----------EAPRQITMLAWARDGSKLYGLGRDLHV 158

Query: 368 WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV 427
            + E+G L                 + + V    +S+  +                 D  
Sbjct: 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY--------TARKDID 210

Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRNNILVSGNADSTVKVWDIVSG 486
                +  T +   + E+G +    +           +      +  A + ++ +D+   
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
             ++ +        +   +          S DG                           
Sbjct: 271 ASIKRV----PLPHSYYSVNV--------STDG--------------------------- 291

Query: 547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVW 601
                             V      G +  +D +T E    +  L    S  +  
Sbjct: 292 ----------------STVWLGGALGDLAAYDAETLEKKGQV-DLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 8/111 (7%), Positives = 28/111 (25%), Gaps = 8/111 (7%)

Query: 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569
            +++  +    + + D +       +  +         + +                T +
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--------GRIAYATVN 53

Query: 570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
              ++   D+ TGE +  +           ++    S      A+      
Sbjct: 54  KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.4 bits (170), Expect = 7e-14
 Identities = 38/289 (13%), Positives = 88/289 (30%), Gaps = 11/289 (3%)

Query: 131 SGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY 190
             E L  + GH   +  +  +   ++SG+YD  +  W+  +    H+      ++ S   
Sbjct: 2   HDEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMHQDHSN-LIVSLDNSKAQ 58

Query: 191 ALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSN 250
              S     +             +       + G         +++I  S    +     
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

Query: 251 AERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ 310
                +   L  +     +     +   +     +S   +       +++          
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178

Query: 311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD------LFGFQFDGVHVVSGSLDTS 364
                  +   +L  RE          +K   +            + +   V +GSLDT+
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 365 IRVWEAES-GNLRHTLMGHQSLTSGME-LRNNILVSGNADSTVKVWDIV 411
           I ++  +    +   L  H+   + +     + LVS  AD+ +K W++V
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (158), Expect = 2e-12
 Identities = 36/293 (12%), Positives = 80/293 (27%), Gaps = 29/293 (9%)

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER 253
           + ++SGS D  +  WS+++         H+  + S   +     S  +            
Sbjct: 22  NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYSSISWDDTLKV----- 71

Query: 254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR 313
                      +                   +     +L +           +R      
Sbjct: 72  -------NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG 373
           +         +  E+         +      DL          +S S   +        G
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 374 NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS 433
            +    +  + + +                  K+  I     +        +   V +GS
Sbjct: 185 KILLYDLQSREVKTSRWAFRTS----------KINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 434 LDTSIRVWEAES-GNLRHTLMGHQSLTSGME-LRNNILVSGNADSTVKVWDIV 484
           LDT+I ++  +    +   L  H+   + +     + LVS  AD+ +K W++V
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 5e-08
 Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 21/169 (12%)

Query: 1   MSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRS 60
           +   +    ++   ++    LK       + +  S       +             S   
Sbjct: 137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 196

Query: 61  VEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSR 120
               W  R  K   +     +      +     + +GS D  + ++S             
Sbjct: 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--------- 247

Query: 121 DATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWN 168
                       + +  L  H   V  + +     +VS   D  +K WN
Sbjct: 248 -----------MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE 530
             + L+T+SG   H   +T L  N   +I+ S DG +  W   +  
Sbjct: 2   HDEVLKTISG---HNKGITALTVNP--LISGSYDGRIMEWSSSSMH 42

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 31/246 (12%), Positives = 81/246 (32%), Gaps = 3/246 (1%)

Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK 415
           ++SGS D  I  W + S +  H+ +      S              D+            
Sbjct: 24  LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK---AQEYSSISWDDTLKVNGITKHEFG 80

Query: 416 KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD 475
                    +       + D  + + ++ +G++  ++  +   ++    +N + V     
Sbjct: 81  SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG 140

Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPL 535
           +T++V+ +   +    L    + + +   +  +  ++      G + L+D+++ E  T  
Sbjct: 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200

Query: 536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGG 595
            +                     +     V T S D  + ++ VK    I   ++    G
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260

Query: 596 SGGVVW 601
              ++W
Sbjct: 261 VNNLLW 266

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 31/399 (7%), Positives = 83/399 (20%), Gaps = 86/399 (21%)

Query: 196 IVSGSDDNTLKVWSATTGKCLRTL-IGHTGGVWS---SQMAGNIIISGSTDRTLKGWSNA 251
           ++  +  N L V    +    ++  +    G  +   +       +  +    + G    
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT 311
                                    E        ++ P    +Y                
Sbjct: 71  TC----------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN------ 114

Query: 312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE 371
                      +      LEA  +          L     DG   V+G     I   + +
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---DIYKMDVK 171

Query: 372 SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS 431
           +G     L        G    + +    +     +   + +  +         D     +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD------DKQDPAT 225

Query: 432 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGQCL 489
             L       + ++G          +    +G+    +        + +  +D+   + +
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI 285

Query: 490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
           +             C+ F           G                              
Sbjct: 286 KAA----NLDHTYYCVAF--------DKKG------------------------------ 303

Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
                          +        + +++  T E ++N+
Sbjct: 304 -------------DKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 61.3 bits (147), Expect = 9e-11
 Identities = 23/347 (6%), Positives = 62/347 (17%), Gaps = 60/347 (17%)

Query: 90  SGSRIVSGSDDNTLKVWSATTGKC-----------------------LLVSGSRDATLRV 126
               ++  +  N L V    +                            V  +    +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 127 WHIESGECLHVL------VGHLAAVRCVQY--------------DGKLVVSGAYDYMVKI 166
             +++ +                ++                                +++
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 167 WNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG-- 224
           ++                   +                +      TGK    L       
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186

Query: 225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF 284
             +S+          S            R     Q   + +     +    ++ +     
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL---LYGYLSVDLK----- 238

Query: 285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP 344
                 +        L               +     N L +    +   +      H  
Sbjct: 239 ----TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTY 294

Query: 345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM---GHQSLTSG 388
               F   G  +  G     + V+  ++      +    G  S T+ 
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567
              ++I ++    + + DV +       +      P   ++            N    + 
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD---------NRTAYVL 57

Query: 568 SSDDGTVKLWDVKTGEFIRNLV-SLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
           ++  G +   D+ T +   +   S   G  G  ++    S              
Sbjct: 58  NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ 111

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 37/353 (10%), Positives = 96/353 (27%), Gaps = 38/353 (10%)

Query: 74  KVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
           ++ +   D  I+ ++            +            LL+  S D +L V+  +   
Sbjct: 5   QIEQAPKD-YISDIKII-------PSKS------------LLLITSWDGSLTVYKFDIQA 44

Query: 134 CLHVLV---GHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT--EECLHAELQETEVE 185
               L+    +   + C  +       +  G     +   +             +     
Sbjct: 45  KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104

Query: 186 LSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTL 245
                    ++++ S D  ++V            + +     +        +  ++ R +
Sbjct: 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164

Query: 246 KGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL 305
            G +N++      Q             ++    ++Q   ++LLP+E   Y  + +     
Sbjct: 165 VGMNNSQV-----QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI 365
           +            ++       +     T        +     F      + +   D  I
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE----FSPRHKFLYTAGSDGII 275

Query: 366 RVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKVWDIVSGTKKL 417
             W  ++             +   +   +NIL    +D T K    +  T +L
Sbjct: 276 SCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIEL 328

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 9e-12
 Identities = 28/347 (8%), Positives = 78/347 (22%), Gaps = 63/347 (18%)

Query: 194 SRIVSGSDDNTLKVWSATTGKC---LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKG 247
           S ++  S D +L V+          L   + +   +            I  G+    +  
Sbjct: 24  SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83

Query: 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
                         +       R      +                              
Sbjct: 84  VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA------------------------- 118

Query: 308 AAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367
                        D   + +  +    L+ N       +F    +   ++ G  ++ ++ 
Sbjct: 119 ----SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174

Query: 368 WEAESGNLRHTLMGHQSLTSGMELR------NNILVSGNADSTVKVWDIVSGTKKLMFRI 421
           +        +  +    L   +                + D  V V              
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY---- 230

Query: 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVK 479
                          S + +      L           + +E       L +  +D  + 
Sbjct: 231 --------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276

Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV 526
            W++ + + ++  +    ++ +V  +  +   +  ++ D T K    
Sbjct: 277 CWNLQTRKKIKNFAKF--NEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 37/299 (12%), Positives = 81/299 (27%), Gaps = 35/299 (11%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG------MELRNNILVSGNAD 402
                  ++  S D S+ V++ +       L+              ++  +  +  G   
Sbjct: 19  IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78

Query: 403 STVKVWDIVSGTKKLMFRICLFDGVHVVSGS------------------LDTSIRVWEAE 444
             +   D++             +                             +       
Sbjct: 79  GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA 138

Query: 445 SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS---GRNKHQSA 501
             NL       ++    M+  ++ L+ G  +S V+ + +   +         G       
Sbjct: 139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198

Query: 502 VTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI----YSQPLLCPH 557
           V  L         SS DG V +               F        +     + P+    
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS 616
                +F+ T+  DG +  W+++T + I+N     +  +   V +I  S+  L  A   
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVVKIACSDNILCLATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 7/55 (12%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF 539
           Q +Q        +  ++ ++   +   ++ +S DG++ ++       +  L+ S 
Sbjct: 2   QIVQIEQA---PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL 53

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 8e-06
 Identities = 16/152 (10%), Positives = 41/152 (26%), Gaps = 12/152 (7%)

Query: 79  HDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL 138
           +    +  L          S D  + V           S       + +           
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS------SKRFAFRCHRLNLKD 247

Query: 139 VGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI 196
                 V  +++    K + +   D ++  WN  T + +    +  E  +       + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 197 VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS 228
              + D+T K          +T+  +   ++ 
Sbjct: 308 CLATSDDTFKTN----AAIDQTIELNASSIYI 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 34/372 (9%), Positives = 91/372 (24%), Gaps = 58/372 (15%)

Query: 214 KCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271
           + ++        +   ++    ++++  S D +L  +                       
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK---------------------- 39

Query: 272 MMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA--EDNLLWREKC 329
                      D +  L  +  L    F+   DL     T +          +  ++   
Sbjct: 40  ---FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT 96

Query: 330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM 389
              A L   +     D          ++      +         NL       ++    M
Sbjct: 97  NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156

Query: 390 ELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLR 449
           +  ++ L+ G  +S V+ + +                             +         
Sbjct: 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE---------------SGLKYQIRDVAL 201

Query: 450 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS 509
                     S ++ R  +    +           + +C +           V  ++F+ 
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 510 --RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567
             +F+ T+  DG +  W+++T +                           +  +   +  
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRK------------KIKNFAKFNEDSVVKIACSDNILCL 309

Query: 568 SSDDGTVKLWDV 579
           ++ D T K    
Sbjct: 310 ATSDDTFKTNAA 321

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.8 bits (166), Expect = 3e-13
 Identities = 32/295 (10%), Positives = 75/295 (25%), Gaps = 19/295 (6%)

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNA 251
            +I   +   ++      +         H+     ++ +  G    SG     ++ W   
Sbjct: 30  DKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT- 87

Query: 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT 311
                        + T I      +     +D       +    V    +    +    T
Sbjct: 88  ------------TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE 371
             S   L            + +   R       +              +     +   + 
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 372 SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS 431
             N   +L         + L N +  +            V+ +  +       DG  + S
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 432 GSLDTSIRVWEAESGNLRHTLMGHQSLTS---GMELRNNILVSGNADSTVKVWDI 483
            S D +I++W   +  +  T+     +     G+      LVS +A+  +   + 
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.0 bits (164), Expect = 6e-13
 Identities = 30/302 (9%), Positives = 70/302 (23%), Gaps = 27/302 (8%)

Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
            +   +   ++    + S     +   H       +    G    SG     V+IW+   
Sbjct: 31  KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 89

Query: 172 EECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
              +                ++             V           L        +   
Sbjct: 90  TTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 144

Query: 232 AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE 291
               + S     +      +        + +           +  +      +       
Sbjct: 145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY------- 197

Query: 292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF 351
                     P+  L A+        L       +    E  +L     +       +  
Sbjct: 198 ---------NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 248

Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS---GMELRNNILVSGNADSTVKVW 408
           DG  + S S D +I++W   +  +  T+     +     G+      LVS +A+  +   
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

Query: 409 DI 410
           + 
Sbjct: 309 NP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.7 bits (158), Expect = 3e-12
 Identities = 9/60 (15%), Positives = 30/60 (50%)

Query: 466 NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWD 525
              + S +AD T+K+W++ + +  +T+    + +     + +  + +++ S +G +   +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 41/295 (13%), Positives = 87/295 (29%), Gaps = 26/295 (8%)

Query: 343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGN 400
              + G    G  +   +  TS+      S         H   T+  +   +     SG+
Sbjct: 19  TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 401 ADSTVKVWDIVSGTKKLMFRICLFDG---------------VHVVSGSLDTSIRVWEAES 445
               V++WD    T  L   I +F G                          + +++  +
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

Query: 446 GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCL 505
            N   T       +   +      +   +D              ++  G +         
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 506 QFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
             +     ++  DGT+ L++   G         F  +    + +S  +       +   +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTK----TGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253

Query: 566 ITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
            ++S D T+K+W+V T +  + +      G+     ++    TK      S NG 
Sbjct: 254 ASASADKTIKIWNVATLKVEKTI----PVGTRIEDQQLGIIWTKQALVSISANGF 304

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 5e-09
 Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 18/170 (10%)

Query: 1   MSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRS 60
               S   +      + P           T    S +  P  S   S+     + + +  
Sbjct: 160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 219

Query: 61  VEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSR 120
                        K +              G++I S S D T+K+W+  T K        
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE------ 273

Query: 121 DATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPD 170
             T+ V                     + +  + +VS + +  +   NP+
Sbjct: 274 -KTIPVGT-----------RIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 504 CLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563
               +   + ++S D T+K+W+V T +    +                      + +  +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG----------TRIEDQQLGIIWTKQ 294

Query: 564 FVITSSDDGTVKLWD 578
            +++ S +G +   +
Sbjct: 295 ALVSISANGFINFVN 309

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.5 bits (165), Expect = 3e-13
 Identities = 48/296 (16%), Positives = 88/296 (29%), Gaps = 17/296 (5%)

Query: 132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQE-TEVELSH 188
           G    V  GH  A+  +    DGK + S   +  +  W+  T             +    
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 189 GYALRSRIVSGSDDNTLKVWSATTGK----CLRTLIGHTGGVWSSQMAGNIIISGSTDRT 244
               +  + + S D+ LKV  A                +  +  +  A   I   +  + 
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 245 LKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304
           +  +S+ +          SC           +  Q  +  +  L       V T + P +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG------VHVVS 358
           +   A +      +A D          A                           V + +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 359 GSLDTSIRVWEAESGNLRHTLMGH----QSLTSGMELRNNILVSGNADSTVKVWDI 410
           GSLD S+ VW     +    ++       S+ S + L    +VS   DS +K W++
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.3 bits (149), Expect = 3e-11
 Identities = 32/317 (10%), Positives = 77/317 (24%), Gaps = 24/317 (7%)

Query: 213 GKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR 270
           G   +   GH   + +   +  G  + S   +  +  W  +                   
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---------ISNRVFPD 52

Query: 271 HMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330
               +I          L       ++         + +++   +        L       
Sbjct: 53  VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 112

Query: 331 EAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME 390
            A                 +    +  S     ++   +            H    SG  
Sbjct: 113 IAVAACYKHIAIYSHGKLTEVPISYNSS---CVALSNDKQFVAVGGQDSKVHVYKLSGAS 169

Query: 391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH 450
           +     +   A+ T   +           +        V +         W   +  +  
Sbjct: 170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 229

Query: 451 TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NS 509
                          N  L +G+ D++V VW++        +       S+V  + + N 
Sbjct: 230 VSWSPD---------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280

Query: 510 RFVITSSDDGTVKLWDV 526
             ++++  D  +K W+V
Sbjct: 281 TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 3e-08
 Identities = 31/271 (11%), Positives = 74/271 (27%), Gaps = 5/271 (1%)

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVK 406
              DG  + S   +  I  W+  +G          +  +T         L + + D  +K
Sbjct: 20  SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK 79

Query: 407 VWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN 466
           V             +        +  ++     +  A            +     +   +
Sbjct: 80  VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 139

Query: 467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV 526
           + +   N    V V    S   +  LSG +  +            V  S++   +   D 
Sbjct: 140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 199

Query: 527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFI 585
                   + ++F L       +    +       ++  + T S D +V +W++      
Sbjct: 200 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 259

Query: 586 RNLVSLDSGGSGGVVWRIRASETKLVCAVGS 616
              + +    +   V  +       + + G 
Sbjct: 260 P--IIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 446 GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT 503
           G++     GH    + +        L S +A+  +  WDI +G   +       H + +T
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--HATMIT 59

Query: 504 CLQFNSRFVI-TSSDDGTVKLWDVKTGE 530
            ++  S+  + T S D  +K+       
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 511 FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570
            + T S D +V +W++        ++           +                ++++  
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN---------ETTIVSAGQ 288

Query: 571 DGTVKLWDV 579
           D  +K W+V
Sbjct: 289 DSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 9e-04
 Identities = 19/161 (11%), Positives = 40/161 (24%), Gaps = 19/161 (11%)

Query: 9   NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTR 68
             +   +   K+       V T +  +  +    S   +               +     
Sbjct: 154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 213

Query: 69  PIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWH 128
                                   R+ +GS DN++ VW+                     
Sbjct: 214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH-------------- 259

Query: 129 IESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWN 168
                 +      +++V  V + +   +VS   D  +K WN
Sbjct: 260 ----PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA-EDNLLWREKCL 330
            +RD I+ LP E++L +  +LQ ED++ +    ++W  +  +   LW++  +
Sbjct: 1   LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 52

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 4e-11
 Identities = 29/313 (9%), Positives = 76/313 (24%), Gaps = 27/313 (8%)

Query: 110 TGKCLLVSGSRDATLRVWHIESG--ECLHVLVGHL-AAVRCVQY----DGKLVVSGAYDY 162
           T   +     + A +R           +    GH  + V  V++      + + SG    
Sbjct: 28  TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87

Query: 163 MVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGH 222
            V +W    ++  ++     + E        S I           W     +      G 
Sbjct: 88  KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS----------WDFEGRRLCVVGEGR 137

Query: 223 TGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282
                         +   +  + +  +   +     + +   +   +             
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197

Query: 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH 342
           D            V       + +    + R        +  + +           +   
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-----DDQEPVQ 252

Query: 343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-----NNILV 397
                    D     +   D +IRVW+  +          +      ++      N  ++
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312

Query: 398 SGNADSTVKVWDI 410
           S + D T+  +++
Sbjct: 313 SLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 28/303 (9%), Positives = 76/303 (25%), Gaps = 20/303 (6%)

Query: 194 SRIVSGSDDNT-LKVW--SATTGKCLRTLIGHTGGV-----WSSQMAGNIIISGSTDRTL 245
           + I      +  ++      +    +    GH   V     +S       + SG     +
Sbjct: 30  NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 89

Query: 246 KGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL 305
             W           +  + +         + +  +  +   L                D 
Sbjct: 90  IVWGWTFDK-ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148

Query: 306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI 365
             +               L + + + + T+  +          F+F           + +
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208

Query: 366 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD 425
           R  E    +    +              +       +    + D     +  +F +   D
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQEPVQGGIFALSWLD 262

Query: 426 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-----NNILVSGNADSTVKV 480
                +   D +IRVW+  +          +      ++      N  ++S + D T+  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 481 WDI 483
           +++
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 8e-09
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 466 NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVK 522
           +    +  AD+T++VWD+ + +C+Q  +  +K Q     +      +  +I+ S DGT+ 
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTL-DKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 523 LWDV 526
            +++
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 3e-08
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 15/241 (6%)

Query: 23  GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDH 82
           G +   +    ++         +   S ++ L      +  ++  R +      + +   
Sbjct: 83  GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142

Query: 83  VITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL 142
            I+    +    VSG            +     ++   D ++  +     +       H 
Sbjct: 143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202

Query: 143 A------AVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR--- 193
                   V      G+ V++   D  +  ++  + E L     + E      +AL    
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262

Query: 194 -SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-----GNIIISGSTDRTLKG 247
             +  +   D T++VW  TT KC++        + + Q+         IIS S D TL  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 248 W 248
           +
Sbjct: 323 Y 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 42/315 (13%), Positives = 90/315 (28%), Gaps = 41/315 (13%)

Query: 336 HRNKKTHVPDLFGFQFDGVHVVSGSLD-TSIRVWEAESGNLR--HTLMGHQ-----SLTS 387
            RN  TH+     +      +         +R  +     +       GH      ++  
Sbjct: 16  QRNFTTHL----SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKF 71

Query: 388 GMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSL------------- 434
                +  L SG+    V VW      +     + +     V++G +             
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

Query: 435 ------DTSIRVWEAESGNLRHTLMGHQS---LTSGMELRNNILVSGNADSTVKVWDIVS 485
                 D        +SGN    + GH          + R    ++   D +V  +    
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 191

Query: 486 GQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY 545
            +   +    +K  S V  ++F+         +  + +   +           F+     
Sbjct: 192 FKFSASDRTHHKQGSFVRDVEFSPDS-----GEFVITVGSDRKISCFDGKSGEFLKYIED 246

Query: 546 FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA 605
                Q  +      +S+   T   D T+++WDV T + ++             V  +  
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 606 SETKLVCAVGSRNGT 620
              +++    S +GT
Sbjct: 307 GNGRIIS--LSLDGT 319

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 28/263 (10%), Positives = 64/263 (24%), Gaps = 38/263 (14%)

Query: 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ------------SLTSGMELRNN 394
           F       ++ SG     + VW        +++  +              ++   E R  
Sbjct: 71  FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 395 ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRV-------------- 440
            +V    D+        SG                          +              
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 441 ----WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRN 496
                 ++  + +          S       I V  +   +                   
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250

Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556
                      +S+   T   D T+++WDV T +     +  + L+          ++  
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSK----CVQKWTLDKQQLGNQQVGVVAT 306

Query: 557 HLQFNSRFVITSSDDGTVKLWDV 579
                +  +I+ S DGT+  +++
Sbjct: 307 ----GNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 24/104 (23%)

Query: 50  PWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT 109
                       +              +     +         +  +   D T++VW  T
Sbjct: 222 ITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 281

Query: 110 TGKCL------------------------LVSGSRDATLRVWHI 129
           T KC+                        ++S S D TL  + +
Sbjct: 282 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 32/310 (10%), Positives = 83/310 (26%), Gaps = 33/310 (10%)

Query: 63  INWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDA 122
           ++     +       GH   V+T ++FS                    G   L SG    
Sbjct: 45  LDDGDSKVPPVVQFTGHGSSVVTTVKFS-----------------PIKGSQYLCSGDESG 87

Query: 123 TLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQET 182
            + VW     +  + +  ++ +   V       +S  ++        +  +     +   
Sbjct: 88  KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147

Query: 183 EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTD 242
                   +  S+ ++       +   + T     +++ + G  +    +        + 
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207

Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
                +S         + + +    +          +F +                    
Sbjct: 208 VRDVEFSPDSG-----EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262

Query: 303 EDLLRAA---QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG 359
                      T R W        +   KC++  TL + +  +         +G  ++S 
Sbjct: 263 SQKFATVGADATIRVWD-------VTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISL 314

Query: 360 SLDTSIRVWE 369
           SLD ++  +E
Sbjct: 315 SLDGTLNFYE 324

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLW 325
           LP EL L + + L   +LL+ +  C+ W  LA D  LW
Sbjct: 4   LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 10/201 (4%), Positives = 35/201 (17%), Gaps = 10/201 (4%)

Query: 50  PWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT 109
                          +     K       +              +   S  +        
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208

Query: 110 TGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNP 169
                    S+   + +          V     +       +            + +   
Sbjct: 209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND----MYKRSSPINVDPG 264

Query: 170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS 229
           D    +  E       +       +      +   L  +   T K    +      +   
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDL 320

Query: 230 QMA--GNIIISGSTDRTLKGW 248
           +++     ++    D  +  +
Sbjct: 321 RLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 37/399 (9%), Positives = 84/399 (21%), Gaps = 66/399 (16%)

Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNA 251
             I   S      +   +    L+  +     +   +      +     T          
Sbjct: 16  DLIAFVSRG-QAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREG------- 65

Query: 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT 311
              L I             ++  +      R+    +       ++T           + 
Sbjct: 66  -DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE 371
            R                     L   +           +D                   
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG---------------- 168

Query: 372 SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF--RICLFDGVHV 429
                 T           +  +  L   +  S     D V          +  +   +  
Sbjct: 169 RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228

Query: 430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCL 489
                    R   +E+G      M  +S    ++  +  ++     S +     V G+  
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288

Query: 490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
                                    + + G +  +DVKT + +                 
Sbjct: 289 AYYQ--------------------GAPEKGVLLKYDVKTRKVTE---------------V 313

Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
              L    L  + + V+   DDG +  + ++  E  R +
Sbjct: 314 KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 38/394 (9%), Positives = 90/394 (22%), Gaps = 56/394 (14%)

Query: 106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDY- 162
           +S   G  L+   SR     +  +     L V       +R V+   D K+         
Sbjct: 10  FSPLDGD-LIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREG 65

Query: 163 -MVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG 221
             + I++  T +    E     V            V  +D   +      TGK       
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 222 HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ 281
               +    ++ N            G ++                 + R +         
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYV-----MQAIHVYDMEGRKIFAATTENSH 180

Query: 282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT 341
               +       LY L+               S   +  +             L      
Sbjct: 181 DYAPAFDADSKNLYYLS---------YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG--- 228

Query: 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA 401
             P+        +   +G  D +     +   N+               L  ++ V G  
Sbjct: 229 -SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE- 286

Query: 402 DSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 461
                                     +         +  ++ ++      +   ++  + 
Sbjct: 287 -----------------------FAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTD 319

Query: 462 MELRNN--ILVSGNADSTVKVWDIVSGQCLQTLS 493
           + L  +   ++    D  +  + +   +  +T+ 
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 29/352 (8%), Positives = 72/352 (20%), Gaps = 64/352 (18%)

Query: 66  RTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDD--NTLKVWSATTGKCLLVSG--- 118
             + +    VLK  +   I  ++                + L ++   TGK         
Sbjct: 27  FIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG 86

Query: 119 -------SRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAY----------- 160
                   R+    V   +  E + V +         +    ++                
Sbjct: 87  NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 146

Query: 161 -----------DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWS 209
                         + +++ +  +   A  + +        A    +   S  +      
Sbjct: 147 PLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206

Query: 210 ATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI 269
                    ++     +     + N         T +        +       + +P   
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC 329
           R ++ L                             +           +            
Sbjct: 267 RMIIPLESSIL------------------------IYSVPVHGEFAAYYQGAPEKGVLLK 302

Query: 330 LEAATLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTL 379
            +  T  R       +L   +   D   V+    D  I  +  E      T+
Sbjct: 303 YDVKT--RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 32/386 (8%), Positives = 86/386 (22%), Gaps = 79/386 (20%)

Query: 116 VSGSRDATLRVWHI--ESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEE 173
           +      T   W      G  L   +G   ++    + G      +  +           
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF----------- 86

Query: 174 CLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAG 233
                               +R   G   + ++V+   T   +  +       +S     
Sbjct: 87  --------------------ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126

Query: 234 NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHM-MQLIEPQFQRDFISLLPREL 292
           +II + ++   L  +       A   +  + +    +      I P              
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186

Query: 293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD 352
                    P                A++                             + 
Sbjct: 187 LAASDLAAAPAAAGIVGAQ----CTGAQNCS--------------------SQAAQANYP 222

Query: 353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI 410
           G+ V + +         A    ++  + G++S       R     +V+   ++   +   
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI-- 280

Query: 411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL----RN 466
                       L         +   +     A  G     +  +   +  +       +
Sbjct: 281 ------------LTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGAS 327

Query: 467 NILVSGNADSTVKVWDIVSGQCLQTL 492
           +   +      + ++D  S Q   ++
Sbjct: 328 DNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.1 bits (134), Expect = 5e-09
 Identities = 17/278 (6%), Positives = 52/278 (18%), Gaps = 56/278 (20%)

Query: 355 HVVSGSLDTSIRVWEAESGNLRHTLMGH-------QSLTSGMELRNN---ILVSGNADST 404
               G     + V++  +      +                +    +   +L      S 
Sbjct: 88  RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147

Query: 405 VKVWDIVSGTKKLMFRICLFDGVHV--------VSGSLDTSIRVWEAESGNLRH------ 450
                +                 H+          GS   S+   +  +           
Sbjct: 148 AAGLSVPGA--SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205

Query: 451 TLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN 508
                   +   +      ++ +  +                 + G    + A       
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265

Query: 509 SRFVITSSDDG------------------TVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
            + V    +                             G+           +    +I +
Sbjct: 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPISNGHDSDAIIAA 322

Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
           Q          S     S+    + ++D  + +   ++
Sbjct: 323 Q-------DGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.6 bits (117), Expect = 6e-07
 Identities = 18/225 (8%), Positives = 42/225 (18%), Gaps = 43/225 (19%)

Query: 72  DPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC------------------ 113
               + GH          S +R   G   + ++V+   T                     
Sbjct: 67  LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126

Query: 114 -----------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVR---------CVQYDGK 153
                      LL      +      +       +                         
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186

Query: 154 LVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG 213
           L  S              +       Q    + +        + + +         A   
Sbjct: 187 LAASDLAAAPAAAGIVGAQ---CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA 243

Query: 214 KCLRTLIGHTGGVWSS--QMAGNIIISGSTDRTLKGWSNAERILA 256
                + G+  G  +   + AG  +++   +         E   +
Sbjct: 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 11/133 (8%), Positives = 22/133 (16%), Gaps = 12/133 (9%)

Query: 471 SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV--------TCLQFNSRFVITSSDDGTVK 522
                +   V     G  L    G     +                +R          V+
Sbjct: 41  YFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFAR-SAKGKRTDYVE 99

Query: 523 LWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
           ++D  T      +                   C     ++  +             V   
Sbjct: 100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS---SACLLFFLFGSSAAAGLSVPGA 156

Query: 583 EFIRNLVSLDSGG 595
              +   S     
Sbjct: 157 SDDQLTKSASCFH 169

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 10/158 (6%), Positives = 34/158 (21%), Gaps = 21/158 (13%)

Query: 74  KVLKGHDDHVITCL-QFSGSRIVSGSDDNTLKVWSATTGKCL-LVSGSRDATLRVWHIES 131
           +     +         + G  + + +         A        + G+           +
Sbjct: 205 QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264

Query: 132 GECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
           G  + V          +          A             +            +S+G+ 
Sbjct: 265 GFQM-VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG--------PISNGHD 315

Query: 192 LRS----------RIVSGSDDNTLKVWSATTGKCLRTL 219
             +             + +    L ++ A + +   ++
Sbjct: 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.0 bits (126), Expect = 6e-08
 Identities = 45/413 (10%), Positives = 109/413 (26%), Gaps = 44/413 (10%)

Query: 104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD 161
           ++          V+      + +   +S + + V+     AV   +    G+ ++    D
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD 82

Query: 162 YMVKIWNPDTEECL-HAELQETE------VELSHGYALRSRIVSGSDDNTLKVWSATTGK 214
             + + +   +E    AE++              GY  R  I          +    T +
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 215 CLRTLIGHTGGVWSSQMAGN---IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271
             + +      V +           I  S +      +  E     G+++          
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET----GKVLLVNYKDIDNL 198

Query: 272 MMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE 331
            +  I                          +  +  ++  R    +         +   
Sbjct: 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258

Query: 332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 391
                 + K           DG   + G+   +   +   +      L G    +  ++ 
Sbjct: 259 ----FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFIKT 311

Query: 392 RNNI---------LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE 442
                                +V V+D+ +   K          +   +   + + RV +
Sbjct: 312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL-----PIAEWADLGEGAKRVVQ 366

Query: 443 AE-SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSG 494
            E +           S+ +G    + ++V    D T+K+  +V    L T +G
Sbjct: 367 PEYNKRGDEVWF---SVWNGKNDSSALVVVD--DKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.0 bits (118), Expect = 5e-07
 Identities = 44/407 (10%), Positives = 106/407 (26%), Gaps = 55/407 (13%)

Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAER 253
            V+  D   + +    + K ++ +      V  S+M+  G  ++    D  +        
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDL--- 90

Query: 254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR 313
                    + EPT++  +   IE +           +       +  P           
Sbjct: 91  --------WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP---------QF 133

Query: 314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG 373
           +                    +     T     +  +     +++        V   E+G
Sbjct: 134 AIMDGETLEPKQ--------IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 185

Query: 374 N-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSG 432
             L        +LT         L  G  DS+ + +   +     +  I   D       
Sbjct: 186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245

Query: 433 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTL 492
            +  +       +           +   G     +I + G        +     + +  L
Sbjct: 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYA---WKKVAEL 299

Query: 493 SGRNKHQSAV------TCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
            G+      +      + L  ++ F   +    +V ++D+K  +         +    + 
Sbjct: 300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD----AKYQVLPIAEWA 355

Query: 547 LIYSQPLLCPHLQFN--SRFVITS-----SDDGTVKLWDVKTGEFIR 586
            +          ++N     V  S     +D   + + D KT +   
Sbjct: 356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 402

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 9/118 (7%)

Query: 465 RNNILVSGNADSTVKVWDIVSGQCLQTL-SGRNKHQSAVTCLQFNSRFVITSSDDGTVKL 523
            N   V+      + + D  S + ++ + +G   H S ++    + R+++    D  + +
Sbjct: 31  PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMS---ASGRYLLVIGRDARIDM 87

Query: 524 WDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581
            D+   E +        +                   +   +  +       + D +T
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESS-----KFKGYEDRYTIAGAYWPPQFAIMDGET 140

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 511 FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570
           F +T  D G + L D  + +    + + + +   +    S          + R+++    
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV---HISRMSA---------SGRYLLVIGR 81

Query: 571 DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG 619
           D  + + D+   E  +         +  V               G+   
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 21/173 (12%), Positives = 44/173 (25%), Gaps = 16/173 (9%)

Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF--------DGVHVVSGSLDTSIRVWEA 443
            N   V+      + + D  S     +               G +++    D  I + + 
Sbjct: 31  PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDL 90

Query: 444 ESGNLRHTL-----MGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGR 495
            +            +  +S+ S           +          + D  + +  Q +S R
Sbjct: 91  WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150

Query: 496 NKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI 548
                  T         I +S +    + +VK       +    I N     I
Sbjct: 151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 31/184 (16%)

Query: 47  SSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVW 106
           +S           +   N      K    L+G     +             +   +  ++
Sbjct: 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI----------KTHPKSSHLY 319

Query: 107 SATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKI 166
             TT            ++ V+ +++ +  + ++   A    +    K VV   Y      
Sbjct: 320 VDTT---FNPDARISQSVAVFDLKNLDAKYQVLPI-AEWADLGEGAKRVVQPEY------ 369

Query: 167 WNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226
            N   +E            + +G    S +V   DD TLK+ +      L T  G    V
Sbjct: 370 -NKRGDEVW--------FSVWNGKNDSSALVV-VDDKTLKLKAVVKDPRLITPTGKF-NV 418

Query: 227 WSSQ 230
           +++Q
Sbjct: 419 YNTQ 422

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
           F +T  D G + L D  + + ++ +       +G  V   R S +     V  R+  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVI------DTGYAVHISRMSASGRYLLVIGRDAR 84

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 52.2 bits (123), Expect = 7e-08
 Identities = 27/306 (8%), Positives = 81/306 (26%), Gaps = 26/306 (8%)

Query: 197 VSGSDDNTLKVWSATTGKCLRTLIGHTG--GVWSSQMAGNIIISGSTDRTLKGWSNAERI 254
           ++ S+ + + V   T+ K   T+   +   G   S     + ++ +    +         
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIID----- 60

Query: 255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRS 314
            A   +I +         + +     Q    ++    L++   T       ++  ++   
Sbjct: 61  TATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120

Query: 315 WRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN 374
                +   L+     +      N  T               ++ + D +          
Sbjct: 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180

Query: 375 LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSL 434
               +    +                 +       + +  K       +  G + ++  +
Sbjct: 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240

Query: 435 DTSIRVWE-AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS 493
                    A + + +                  + V+ +  +TV V D  +     T++
Sbjct: 241 PVGPDPAGIAVTPDGKK-----------------VYVALSFCNTVSVIDTATNTITATMA 283

Query: 494 -GRNKH 498
            G+N +
Sbjct: 284 VGKNPY 289

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 25/278 (8%), Positives = 67/278 (24%), Gaps = 15/278 (5%)

Query: 116 VSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGK-LVVSGAYDYMVKIWNPDTE 172
           ++ S    + V  + S +    +    +         DG  + V+ A+   V I +  T 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 173 ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA 232
             +      +  +         ++   +  ++      TT   +   +          ++
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 233 --GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR 290
             G  +   +         N      I  +     P  I       +          +  
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV------- 343
              +        +     +    +            +     + +               
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 344 -PDLFGFQFDGVHV-VSGSLDTSIRVWEAESGNLRHTL 379
            P       DG  V V+ S   ++ V +  +  +  T+
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 470 VSGNADSTVKVWDIVSGQCLQTLS-GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT 528
           ++ +    + V D+ S +   T+  G N   + ++     ++  + ++    V + D  T
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PDGTKVYVANAHSNDVSIIDTAT 63

Query: 529 G 529
            
Sbjct: 64  N 64

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 28/279 (10%), Positives = 63/279 (22%), Gaps = 49/279 (17%)

Query: 357 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSG 413
           ++ S   +I V +  S  +  T+    +   G  +      + V+    + V + D  + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 414 TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN 473
                          V        + V    S  L        ++   ++   + L    
Sbjct: 65  NVI-ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 474 ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST 533
           +    K++   +G    ++          T     S   I  + DGT            +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQF--------------------------------- 560
            + +          + + P                                         
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 561 -----------NSRFVITSSDDGTVKLWDVKTGEFIRNL 588
                        +  +  S   TV + D  T      +
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 17/276 (6%), Positives = 73/276 (26%), Gaps = 21/276 (7%)

Query: 156 VSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL----RSRIVSGSDDNTLKVWSAT 211
           ++ +    + + +  + +        +      G  +        V+ +  N + +    
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP---MGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 212 TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI-- 269
           T   + T+   +     +       +  +   +            +   + + +      
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122

Query: 270 -----RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLL 324
                + +            I+ + + +   V     P+ +       + +    +   +
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182

Query: 325 WREKCLEAATLHRNKKTHVP---DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG 381
                +  + +   K    P    +                 ++ + +  +  +   +  
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242

Query: 382 HQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGT 414
                 G+ +  +   + V+ +  +TV V D  + T
Sbjct: 243 GPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNT 277

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 41/389 (10%), Positives = 95/389 (24%), Gaps = 74/389 (19%)

Query: 94  IVSGSDDNTLKVWSATTGKCL--------------------LVSGSRDATLRVWHIESGE 133
            V+  D   + +   +T +                      L    RD  + +  +   E
Sbjct: 35  SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 94

Query: 134 C-----LHVLVGHLAAVRCV--QYDGKLV-VSGAYDYMVKIWNPDTEECLHAELQETEVE 185
                 + +     +        ++ K       +     I + +T E    +       
Sbjct: 95  PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154

Query: 186 LSHGYALRSR-------------IVSGSDDNTLKVWSATTGKCLRTLIGHTG-----GVW 227
               Y    R             IV+  +   + +   T    L+T           G  
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 214

Query: 228 SSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
               +    I+ +  R      + +    +       +          + P F   + + 
Sbjct: 215 DG--SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272

Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLF 347
              + ++ ++          A +   S+  L   +L          T   ++  +V    
Sbjct: 273 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF-------IKTHPNSQYLYVDATL 325

Query: 348 GFQ---------FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS------GMELR 392
             +         FD   +     D   +              G   +        G E+ 
Sbjct: 326 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI--AEWAGITEGQPRVVQGEFNKDGTEVW 383

Query: 393 NNILVSGNADSTVKVWDIVSGTKKLMFRI 421
            ++    + +S + V D    T +L   I
Sbjct: 384 FSVWNGKDQESALVVVD--DKTLELKHVI 410

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 20/176 (11%)

Query: 464 LRNNILVSGNADSTVKVWDIVSGQCLQTL-SGRNKHQSAVTCLQFNSRFVITSSDDGTVK 522
           L N   V+      + + D  + +    L +G   H S ++    + R++     DG V 
Sbjct: 30  LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA---SGRYLFVIGRDGKVN 86

Query: 523 LWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI-TSSDDGTVKLWDVKT 581
           + D+   E +T                          +  ++ I  +       + D +T
Sbjct: 87  MIDLWMKEPTTVAEIKIGSEARSIET------SKMEGWEDKYAIAGAYWPPQYVIMDGET 140

Query: 582 GEFI------RNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631
            E                      V  I AS  +    V   N  E  K+L++D+ 
Sbjct: 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV---NVKETGKILLVDYT 193

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 48/427 (11%), Positives = 112/427 (26%), Gaps = 66/427 (15%)

Query: 104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL-VGHLAAVRCVQYDGKLVVSGAYDY 162
           ++          V+      + +    + E   VL  G+   +  +   G+ +     D 
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDG 83

Query: 163 MVKIWNPDTEECLHAELQETEVELSHGYALRSR---------IVSGSDDNTLKVWSATTG 213
            V + +   +E     + E ++         S+         I          +    T 
Sbjct: 84  KVNMIDLWMKE--PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141

Query: 214 KCLRTLIGHTGGVWSSQMAGN---IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIR 270
           +  +            +         I  S  R     +  E       L+D  +   ++
Sbjct: 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET--GKILLVDYTDLNNLK 199

Query: 271 HMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330
                 E       +    R    Y +T     + L                   +E  L
Sbjct: 200 TTEISAERFLHDGGLDGSHR----YFITAANARNKLVVID--------------TKEGKL 241

Query: 331 EAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME 390
            A      +  H     G   + VH   G +  +  + +     +     GH      + 
Sbjct: 242 VAIEDTGGQTPHP----GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 297

Query: 391 -----LRNNILVSGNADSTVKVWDI--VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA 443
                L    L      ++  ++    ++   ++   + +FD   +     D   +    
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI 357

Query: 444 ESGNLRHTLMGHQ----------------SLTSGMELRNNILVSGNADSTVKVWDIVSGQ 487
                     G                  S+ +G +  + ++V    D T+++  ++  +
Sbjct: 358 --AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD--DKTLELKHVIKDE 413

Query: 488 CLQTLSG 494
            L T +G
Sbjct: 414 RLVTPTG 420

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 18/195 (9%), Positives = 51/195 (26%), Gaps = 20/195 (10%)

Query: 338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN-NIL 396
            ++ +  DL     + +  V+      I + +  +  ++  L    ++       +   L
Sbjct: 22  TQQMNDWDL-----ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYL 76

Query: 397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 456
                D  V + D+       +  I +      +  S                       
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG--------------WEDKY 122

Query: 457 SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS 516
           ++         +++ G      K+         +         +A+    +   F++   
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 517 DDGTVKLWDVKTGEF 531
           + G + L D      
Sbjct: 183 ETGKILLVDYTDLNN 197

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 49/176 (27%)

Query: 72  DPKVLKGHDDHVITCLQFSGS-RIVSGSDDNTLKVWSATTG--------------KCLLV 116
           DP+    +   ++      G   +   +  N+  ++   T                  + 
Sbjct: 285 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT 344

Query: 117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEEC 174
               D   +   I        +      V   ++  DG  V          +WN   +E 
Sbjct: 345 GDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVW-------FSVWNGKDQE- 393

Query: 175 LHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ 230
                              S +V   DD TL++      + L T  G    V+++ 
Sbjct: 394 -------------------SALVVV-DDKTLELKHVIKDERLVTPTGKF-NVYNTM 428

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 396 LVSGNADSTVKVWDIVSGTKKLMFRICLF--DGVHVVSGSLDTSIRVWEAE----SGNLR 449
             SG     V+V  + S   + + RI +F  D      G  + S  +   +    +G+  
Sbjct: 14  FWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSAT-GWGITNESKEILGGDQQYLNGDCH 70

Query: 450 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-- 507
           H    H S+T G      + ++  A++ V    +   +  +       +  A+  L+   
Sbjct: 71  H---PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKIT--HIPNVQAIHGLRLQK 125

Query: 508 --NSRFVITSSDDGTVKLWDVKTGEF 531
              + +V  +++    +  D      
Sbjct: 126 VPKTNYVFCNAEFVIPQPNDGTDFSL 151

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 9e-04
 Identities = 8/76 (10%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 464 LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGT 520
           L+  + ++      + VW++     L TL+        V  +  +       +    +  
Sbjct: 2   LKQTVYIASPESQQIHVWNLNHEGAL-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 521 VKLWDVKTGEFSTPLM 536
           V  + +   + +    
Sbjct: 61  VLAYRIAPDDGALTFA 76

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 32/317 (10%), Positives = 82/317 (25%), Gaps = 23/317 (7%)

Query: 114 LLVSGSRDATLRVWHIESGECLHVL--VGHLAAVRCVQY--DGK-LVVSGAYDYMVKIWN 168
           + ++      + VW++     L +   V     V+ +    D + L V    ++ V  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 169 PDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS 228
              ++       E+ +  S  +             +    + +  +    L      V  
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125

Query: 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
                +       +RTL   +  +  + +  + D                          
Sbjct: 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG------- 178

Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348
           PR +  +         +     +   W        +   + L+    + +      D+  
Sbjct: 179 PRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 237

Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--------NNILVSGN 400
                         + I V+         +  G Q   +  + R          ++ +G 
Sbjct: 238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TETQPRGFNVDHSGKYLIAAGQ 295

Query: 401 ADSTVKVWDIVSGTKKL 417
               + V++IV     L
Sbjct: 296 KSHHISVYEIVGEQGLL 312

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	635
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.22
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.68
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.64
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.5
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.45
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.39
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.34
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.32
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.3
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.27
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.23
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.88
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.55
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.53
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.52
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.26
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.16
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.59
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.55
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.43
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.34
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.5
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.85
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.38
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.11
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	84.19
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	83.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	83.0

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-41  Score=320.66  Aligned_cols=341  Identities=55%  Similarity=0.952  Sum_probs=264.4

Q ss_pred             eecCCCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcc
Q psy18018         65 WRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAA  144 (635)
Q Consensus        65 wd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~  144 (635)
                      |+..+.++.+.|+||++.|+.|++|+|++||||+.||+|+|||+.+                     +++++++.+|.++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~~~~h~~~   59 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT---------------------GKCLRTLVGHTGG   59 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------CCEEEECCCCSSC
T ss_pred             CCCCCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCCCC
Confidence            7778889999999999999888999999999999999999988764                     5667888999999


Q ss_pred             eEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018        145 VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG  224 (635)
Q Consensus       145 v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  224 (635)
                      |.+++|++.+|++++.|+++++|+.......                                         .....+..
T Consensus        60 V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~   98 (342)
T d2ovrb2          60 VWSSQMRDNIIISGSTDRTLKVWNAETGECI-----------------------------------------HTLYGHTS   98 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEE-----------------------------------------EEECCCSS
T ss_pred             EEEEEeCCCccccceecccccccccccccce-----------------------------------------ecccccce
Confidence            9999997789999999998888886543321                                         11222222


Q ss_pred             CeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018        225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED  304 (635)
Q Consensus       225 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (635)
                      .+......+                                                                       
T Consensus        99 ~~~~~~~~~-----------------------------------------------------------------------  107 (342)
T d2ovrb2          99 TVRCMHLHE-----------------------------------------------------------------------  107 (342)
T ss_dssp             CEEEEEEET-----------------------------------------------------------------------
T ss_pred             eEeeeeccc-----------------------------------------------------------------------
Confidence            222222222                                                                       


Q ss_pred             hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc
Q psy18018        305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS  384 (635)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~  384 (635)
                                                                       ..+..+..++.+.+|+..+++....+..+..
T Consensus       108 -------------------------------------------------~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  138 (342)
T d2ovrb2         108 -------------------------------------------------KRVVSGSRDATLRVWDIETGQCLHVLMGHVA  138 (342)
T ss_dssp             -------------------------------------------------TEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             -------------------------------------------------ccccccccceeEEEeecccccceeeeecccc
Confidence                                                             2344445555566666555554444433332


Q ss_pred             ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe
Q psy18018        385 LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL  464 (635)
Q Consensus       385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  464 (635)
                      ......                                 +....++.++.|+.+++||....+.+..+.+|...+..+.+
T Consensus       139 ~~~~~~---------------------------------~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  185 (342)
T d2ovrb2         139 AVRCVQ---------------------------------YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  185 (342)
T ss_dssp             CEEEEE---------------------------------ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             cceeec---------------------------------cccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC
Confidence            222222                                 23334566667777777777777888888899999999999


Q ss_pred             cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCce
Q psy18018        465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF  544 (635)
Q Consensus       465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  544 (635)
                      ++.++++++.||.|++||++.++++..+..   |...+.++++++++|++++.|+.|++||+...+....+....     
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----  257 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN-----  257 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTT-----
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEecc---cccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccc-----
Confidence            999999999999999999999999988887   888999999999999999999999999999888766654421     


Q ss_pred             eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeE
Q psy18018        545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETK  624 (635)
Q Consensus       545 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~  624 (635)
                         .|...+.++.+  +++++++|+.||+|++||+++++.++.+......+|.+.|++++|+|++.+||+|+.||+...+
T Consensus       258 ---~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~  332 (342)
T d2ovrb2         258 ---KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK  332 (342)
T ss_dssp             ---SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred             ---eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeE
Confidence               13444555444  6679999999999999999999999988766666788999999999999999999999988889


Q ss_pred             EEEEeeecC
Q psy18018        625 LLVLDFDVD  633 (635)
Q Consensus       625 l~~~d~~~~  633 (635)
                      |++|||+.+
T Consensus       333 l~~~Df~~~  341 (342)
T d2ovrb2         333 LLVLDFDVD  341 (342)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEeCCCC
Confidence            999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-39  Score=307.74  Aligned_cols=343  Identities=25%  Similarity=0.395  Sum_probs=251.7

Q ss_pred             CceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-c
Q psy18018         73 PKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-D  151 (635)
Q Consensus        73 ~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~  151 (635)
                      ..+|+||.+.|++|++|++++||||+.||+|+|||+.                     +++++.++.+|.++|++++| .
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~---------------------~~~~~~~l~~H~~~V~~l~~s~   63 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSI---------------------NKKFLLQLSGHDGGVWALKYAH   63 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETT---------------------TTEEEEEEECCSSCEEEEEEET
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECC---------------------CCcEEEEEECCCCCEEEEEEcC
Confidence            3468999999889999999999999999999998876                     45677889999999999999 7


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeeccccce---eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETE---VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  228 (635)
                      +.+|++++.|++|++|+....+..........   .......+.+..+++++.|+.|++||+.+...+............
T Consensus        64 ~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  143 (355)
T d1nexb2          64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  143 (355)
T ss_dssp             TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEE
T ss_pred             CCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccc
Confidence            78999999999999999998876655443322   222333445677888999999999998876655443221111100


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      ..                  ....                                                        
T Consensus       144 ~~------------------~~~~--------------------------------------------------------  149 (355)
T d1nexb2         144 FH------------------TPEE--------------------------------------------------------  149 (355)
T ss_dssp             ES------------------CTTT--------------------------------------------------------
T ss_pred             ee------------------cccc--------------------------------------------------------
Confidence            00                  0000                                                        


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                                             ..........+...+....++++.++++..|+.|++||+.+++.+....++...+.+
T Consensus       150 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  206 (355)
T d1nexb2         150 -----------------------NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS  206 (355)
T ss_dssp             -----------------------CTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             -----------------------ccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccc
Confidence                                   000000112233445567889999999999999999999999888888777776666


Q ss_pred             EEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCE
Q psy18018        389 MELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI  468 (635)
Q Consensus       389 l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  468 (635)
                      +.++                               +++.++++++.|+.|++||.+++..+..+.+|...|.++.+++++
T Consensus       207 ~~~~-------------------------------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~  255 (355)
T d1nexb2         207 TIYD-------------------------------HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF  255 (355)
T ss_dssp             EEEE-------------------------------TTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSE
T ss_pred             cccc-------------------------------ccceeeecccccceEEeeeccccccccccccccccccccccccce
Confidence            5554                               567778888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEe
Q psy18018        469 LVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI  548 (635)
Q Consensus       469 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  548 (635)
                      +++++.||.|++||+.+.........  .....+.++..+++++++| .|+.|++||+++++.+.....          .
T Consensus       256 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~----------~  322 (355)
T d1nexb2         256 LVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANIL----------K  322 (355)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEEC--TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTT----------T
T ss_pred             eeeeecccccccccccccceeccccc--CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEec----------C
Confidence            99999999999999998775544321  1222333344467776666 489999999999987654322          2


Q ss_pred             ccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        549 YSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       549 ~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      |..+|.+++|+|+ .++++++.||.++||.
T Consensus       323 ~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         323 DADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            6788999999987 6788899999876654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-38  Score=299.21  Aligned_cols=336  Identities=52%  Similarity=0.813  Sum_probs=259.2

Q ss_pred             eecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEE
Q psy18018         10 WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQF   89 (635)
Q Consensus        10 ~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~   89 (635)
                      |+..+.+..+.|+||.+.|++|  ++    ++|++||+|+.++.        +.|||.+++++++++.+|.+.| .+++|
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s~--~~----~~g~~l~sgs~Dg~--------i~vWd~~~~~~~~~~~~h~~~V-~~v~~   65 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVITC--LQ----FCGNRIVSGSDDNT--------LKVWSAVTGKCLRTLVGHTGGV-WSSQM   65 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEEE--EE----EETTEEEEEETTSC--------EEEEETTTCCEEEECCCCSSCE-EEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEEE--EE----ECCCEEEEEeCCCe--------EEEEECCCCCEEEEEeCCCCCE-EEEEe
Confidence            7778888899999999999665  55    55899999986544        4469999999999999999988 89999


Q ss_pred             cCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeC
Q psy18018         90 SGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNP  169 (635)
Q Consensus        90 s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~  169 (635)
                      ++++|++++.|+.+++|+....                     ........+...+.........++.+..|+.+.+|+.
T Consensus        66 ~~~~l~s~s~D~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  124 (342)
T d2ovrb2          66 RDNIIISGSTDRTLKVWNAETG---------------------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  124 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTT---------------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             CCCccccceecccccccccccc---------------------cceecccccceeEeeeecccccccccccceeEEEeec
Confidence            9889999999999999987643                     3334444555566665556666666666666666655


Q ss_pred             CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEec
Q psy18018        170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWS  249 (635)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~  249 (635)
                      .++                                         +....+..+.....                      
T Consensus       125 ~~~-----------------------------------------~~~~~~~~~~~~~~----------------------  141 (342)
T d2ovrb2         125 ETG-----------------------------------------QCLHVLMGHVAAVR----------------------  141 (342)
T ss_dssp             SSC-----------------------------------------CEEEEEECCSSCEE----------------------
T ss_pred             ccc-----------------------------------------cceeeeecccccce----------------------
Confidence            443                                         33332222111111                      


Q ss_pred             ccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhh
Q psy18018        250 NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC  329 (635)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (635)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (342)
T d2ovrb2         142 --------------------------------------------------------------------------------  141 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEE
Q psy18018        330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD  409 (635)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd  409 (635)
                                        ...+....+++++.++.|++|+....+.+..+.+|...+....++                 
T Consensus       142 ------------------~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------  186 (342)
T d2ovrb2         142 ------------------CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-----------------  186 (342)
T ss_dssp             ------------------EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC-----------------
T ss_pred             ------------------eeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCC-----------------
Confidence                              122334556777778888888888777777787777666555544                 


Q ss_pred             ccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        410 IVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                                      +.++++++.|+.|++||++.++.+..+.+|...+.+++++++++++++.|+.|++||+...+..
T Consensus       187 ----------------~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  250 (342)
T d2ovrb2         187 ----------------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL  250 (342)
T ss_dssp             ----------------SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             ----------------CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccccccc
Confidence                            4455566666667777777778888889999999999999999999999999999999999998


Q ss_pred             EEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      ..+.....|...+.+++++++++++++.||+|++||+++++.+..+.....      ..|...|++++|+|++.+||+|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~------~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES------GGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT------GGGTCEEEEEEECSSEEEEEEEC
T ss_pred             ccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccC------CCCCCCEEEEEECCCCCEEEEEe
Confidence            888887778899999999999999999999999999999998876643111      12677899999999999999999


Q ss_pred             CCCe----EEEEeCCC
Q psy18018        570 DDGT----VKLWDVKT  581 (635)
Q Consensus       570 ~d~~----v~iwd~~~  581 (635)
                      .||+    |++||+..
T Consensus       325 ~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         325 RNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSSSSCCEEEEEECCC
T ss_pred             CCCCCeeEEEEEeCCC
Confidence            9985    99999863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-38  Score=304.08  Aligned_cols=342  Identities=23%  Similarity=0.417  Sum_probs=251.3

Q ss_pred             EEEeeCCCcce-EEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCC
Q psy18018        135 LHVLVGHLAAV-RCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG  213 (635)
Q Consensus       135 ~~~l~~h~~~v-~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  213 (635)
                      ..+|+||...| +|++|++++||||+.||+|++||+.+++.+..+..+...+..+.+.+++.|++++.|+.|++|+....
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence            45789998875 78899999999999999999999999999999988877777777888899999999999999999998


Q ss_pred             eEEEEEeCCCCCeEEEE--e--eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccc
Q psy18018        214 KCLRTLIGHTGGVWSSQ--M--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP  289 (635)
Q Consensus       214 ~~~~~~~~h~~~v~~~~--~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (635)
                      +.......+........  +  ++..+++++.|+.|++|++........                               
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~-------------------------------  133 (355)
T d1nexb2          85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-------------------------------  133 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------------------------------------
T ss_pred             ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc-------------------------------
Confidence            88777655444333222  2  244566666666666666543211000                               


Q ss_pred             cceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEE
Q psy18018        290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWE  369 (635)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~  369 (635)
                                                                                 ....        .......+.
T Consensus       134 -----------------------------------------------------------~~~~--------~~~~~~~~~  146 (355)
T d1nexb2         134 -----------------------------------------------------------HGEE--------HDYPLVFHT  146 (355)
T ss_dssp             ------------------------------------------------------------------------CCCEEESC
T ss_pred             -----------------------------------------------------------cccc--------ceeccceec
Confidence                                                                       0000        000000000


Q ss_pred             c-cCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce
Q psy18018        370 A-ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL  448 (635)
Q Consensus       370 ~-~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  448 (635)
                      . ...........|...+..                                 ..++++.++.+..|+.+++||+.+++.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~---------------------------------~~~~~~~~~~~~~d~~i~~~d~~~~~~  193 (355)
T d1nexb2         147 PEENPYFVGVLRGHMASVRT---------------------------------VSGHGNIVVSGSYDNTLIVWDVAQMKC  193 (355)
T ss_dssp             TTTCTTEEEEEECCSSCEEE---------------------------------EEEETTEEEEEETTSCEEEEETTTTEE
T ss_pred             cccccceeeeeeeccccccc---------------------------------cccccceeeeecccceeeeeecccccc
Confidence            0 011122222233333322                                 234566777777888888888888888


Q ss_pred             eeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEEC
Q psy18018        449 RHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       449 ~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~  526 (635)
                      +....++...+.++.+  .++++++++.|+.|++||+.++..+..+.+   |...|.++++++++|++++.||.|++||+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---h~~~v~~~~~~~~~l~~~~~dg~i~iwd~  270 (355)
T d1nexb2         194 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLSDKFLVSAAADGSIRGWDA  270 (355)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC---CSSCCCEEEECSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccccccccccccccceeeecccccceEEeeecccccccccccc---ccccccccccccceeeeeecccccccccc
Confidence            8888888888877776  467999999999999999999999999987   88999999999999999999999999999


Q ss_pred             CCCceeeeeccceecCceeEEeccCceecc-cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018        527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCP-HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA  605 (635)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~  605 (635)
                      +++.....             .|...+.++ +++++++++++|+ |+.|+|||+++++++....    .+|.++|++++|
T Consensus       271 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~----~~~~~~V~~v~~  332 (355)
T d1nexb2         271 NDYSRKFS-------------YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI----LKDADQIWSVNF  332 (355)
T ss_dssp             TTCCEEEE-------------EECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCT----TTTCSEEEEEEE
T ss_pred             cccceecc-------------cccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEe----cCCCCCEEEEEE
Confidence            98764322             244455555 4577888777665 8999999999999876432    578899999999


Q ss_pred             CCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        606 SETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       606 s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +|+ .++++++.||.  ++||.|||.
T Consensus       333 ~~~-~~~~~~s~dg~--~~l~~~dfs  355 (355)
T d1nexb2         333 KGK-TLVAAVEKDGQ--SFLEILDFS  355 (355)
T ss_dssp             ETT-EEEEEEESSSC--EEEEEEECC
T ss_pred             cCC-eEEEEEECCCc--EEEEEEeCC
Confidence            997 57888999998  788999874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=286.90  Aligned_cols=285  Identities=19%  Similarity=0.330  Sum_probs=225.6

Q ss_pred             CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018         71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV  148 (635)
Q Consensus        71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l  148 (635)
                      +.++.+ +|...| +|++|+  |++||||+ ||.|+|||+.+++.                ..........+|.+.|.++
T Consensus        43 ~~~~~~-~H~~~V-~~v~fs~~g~~latg~-dg~V~iWd~~~~~~----------------~~~~~~~~~~~h~~~I~~v  103 (337)
T d1gxra_          43 RQINTL-NHGEVV-CAVTISNPTRHVYTGG-KGCVKVWDISHPGN----------------KSPVSQLDCLNRDNYIRSC  103 (337)
T ss_dssp             EEEEEE-CCSSCC-CEEEECSSSSEEEEEC-BSEEEEEETTSTTC----------------CSCSEEEECSCTTSBEEEE
T ss_pred             eEEEEC-CCCCcE-EEEEECCCCCEEEEEE-CCEEEEEEccCCcc----------------cceeEEeeecCCCCcEEEE
Confidence            334444 788888 999999  99999987 79999999986542                1112233455899999999


Q ss_pred             Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018        149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV  226 (635)
Q Consensus       149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  226 (635)
                      +|  ++++|++++.||+|++||+....                                       .+....+..|...+
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~---------------------------------------~~~~~~~~~~~~~v  144 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPT---------------------------------------PRIKAELTSSAPAC  144 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC-----------------------------------------EEEEEEECSSSCE
T ss_pred             EEcCCCCEEEEeecccccccccccccc---------------------------------------cccccccccccccc
Confidence            99  88999999999999999875422                                       22334455666665


Q ss_pred             EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018        227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL  306 (635)
Q Consensus       227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (635)
                      ..+.                                                                            
T Consensus       145 ~~~~----------------------------------------------------------------------------  148 (337)
T d1gxra_         145 YALA----------------------------------------------------------------------------  148 (337)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            5444                                                                            


Q ss_pred             hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce
Q psy18018        307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  386 (635)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v  386 (635)
                                                                ++|++.++++++.++.|++|++.+++.......|...+
T Consensus       149 ------------------------------------------~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v  186 (337)
T d1gxra_         149 ------------------------------------------ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             ------------------------------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ------------------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence                                                      66677788888888999999999888888888999999


Q ss_pred             eEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-
Q psy18018        387 SGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-  465 (635)
Q Consensus       387 ~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-  465 (635)
                      .+++++                               +++..+++++.|+.+++||+++++.+..+. |...|.+++++ 
T Consensus       187 ~~l~~s-------------------------------~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~  234 (337)
T d1gxra_         187 SCIDIS-------------------------------NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP  234 (337)
T ss_dssp             EEEEEC-------------------------------TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT
T ss_pred             cccccc-------------------------------ccccccccccccccccccccccceeecccc-cccceEEEEEcc
Confidence            988875                               344556666666777777777776665553 77888888874 


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018        466 -NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       466 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                       ++++++++.|+.+++||+.+++..... .   |...|++++|  ++++|++++.||.|++||+.+++.+...       
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~---~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-------  303 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKYQLH-L---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------  303 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEEEEC-C---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred             cccccceecccccccccccccccccccc-c---cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-------
Confidence             669999999999999999988766543 3   8889999999  6889999999999999999998866543       


Q ss_pred             ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018        543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV  579 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~  579 (635)
                           .|...|++++|+||+++|++|+.||+|+|||+
T Consensus       304 -----~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         304 -----KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -----ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                 36789999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-36  Score=286.81  Aligned_cols=308  Identities=31%  Similarity=0.510  Sum_probs=248.7

Q ss_pred             eecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCC
Q psy18018         65 WRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL  142 (635)
Q Consensus        65 wd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~  142 (635)
                      |.+++ ....+|+||.+.| ++++|+  +++||||+.||+|+|||+.+                     ++++.++.+|.
T Consensus         3 w~p~~-~~~~~L~GH~~~I-~~l~~sp~~~~l~s~s~Dg~i~iWd~~~---------------------~~~~~~~~~h~   59 (317)
T d1vyhc1           3 WIPRP-PEKYALSGHRSPV-TRVIFHPVFSVMVSASEDATIKVWDYET---------------------GDFERTLKGHT   59 (317)
T ss_dssp             CCCCS-SCSCEEECCSSCE-EEEEECSSSSEEEEEESSSCEEEEETTT---------------------CCCCEEECCCS
T ss_pred             cCCCC-CccEEEcCCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCC
Confidence            75544 4567899999988 999999  89999999999998888764                     45677889999


Q ss_pred             cceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018        143 AAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL  219 (635)
Q Consensus       143 ~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  219 (635)
                      ..|.++++  ++..+++++.++.+.+|+....+.......+.. .......+.++.+++++.|+.+++||+.+++.+..+
T Consensus        60 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  139 (317)
T d1vyhc1          60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  139 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence            99999999  899999999999999999998887776665544 444455566789999999999999999999999999


Q ss_pred             eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018        220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF  299 (635)
Q Consensus       220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (635)
                      .+|...+.++.                                                                     
T Consensus       140 ~~~~~~~~~~~---------------------------------------------------------------------  150 (317)
T d1vyhc1         140 TGHREWVRMVR---------------------------------------------------------------------  150 (317)
T ss_dssp             ECCSSCEEEEE---------------------------------------------------------------------
T ss_pred             ccCCCcceeee---------------------------------------------------------------------
Confidence            88887776655                                                                     


Q ss_pred             cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018        300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL  379 (635)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  379 (635)
                                                                       +++++.+|++++.|+.|++|+..+++....+
T Consensus       151 -------------------------------------------------~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~  181 (317)
T d1vyhc1         151 -------------------------------------------------PNQDGTLIASCSNDQTVRVWVVATKECKAEL  181 (317)
T ss_dssp             -------------------------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             -------------------------------------------------cccCCCEEEEEeCCCeEEEEeeccceeeEEE
Confidence                                                             5667778888888888999998888888888


Q ss_pred             eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018        380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT  459 (635)
Q Consensus       380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  459 (635)
                      ..|...+.++.+.++.                               ...                    ..........
T Consensus       182 ~~~~~~i~~~~~~~~~-------------------------------~~~--------------------~~~~~~~~~~  210 (317)
T d1vyhc1         182 REHRHVVECISWAPES-------------------------------SYS--------------------SISEATGSET  210 (317)
T ss_dssp             CCCSSCEEEEEECCSC-------------------------------GGG--------------------GGGGCCSCC-
T ss_pred             ecCCCCceEEEEeecc-------------------------------ccc--------------------eeecccccee
Confidence            8888888887775310                               000                    0000001111


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018        460 SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      ......+..+++++.|+.|++||+.+++++..+.+   |...|.++++  ++++|++++.||.|++||+++++.+..+..
T Consensus       211 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             ------CCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             eeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC---CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence            12223567889999999999999999999999887   8889999998  689999999999999999999987776654


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                                 |...|++++|+|++++|++|+.||+|+|||
T Consensus       288 -----------h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         288 -----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             -----------CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             -----------CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence                       788999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=286.13  Aligned_cols=224  Identities=17%  Similarity=0.321  Sum_probs=184.9

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCC--ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      |+|++++|++|+.||.|++||+...  +....+..|...+..++++                               +++
T Consensus       105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-------------------------------~~~  153 (337)
T d1gxra_         105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-------------------------------PDS  153 (337)
T ss_dssp             ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-------------------------------TTS
T ss_pred             EcCCCCEEEEeecccccccccccccccccccccccccccccccccc-------------------------------ccc
Confidence            5555666666666666666665432  3445566777777776664                               566


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC  504 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  504 (635)
                      .++++++.++.+++|++.++++.....+|...+.++++  ++..+++++.|+.+++||+++++.+..+.    +...|.+
T Consensus       154 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----~~~~i~~  229 (337)
T d1gxra_         154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFS  229 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc----cccceEE
Confidence            67778888888888888888888889999999999987  46699999999999999999999888776    7788999


Q ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018        505 LQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG  582 (635)
Q Consensus       505 ~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~  582 (635)
                      +++  +++++++++.|+.+++||+++++.....            .|...|++++|+|++++|++++.||.|++||+.++
T Consensus       230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEEC------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEcccccccceecccccccccccccccccccc------------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            998  5889999999999999999988754322            36889999999999999999999999999999999


Q ss_pred             ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        583 EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       583 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      +.+..+      .|.+.|.+++|+||+++|++|+.||.  ++||.
T Consensus       298 ~~~~~~------~~~~~v~~~~~s~d~~~l~t~s~D~~--I~vWd  334 (337)
T d1gxra_         298 ASIFQS------KESSSVLSCDISVDDKYIVTGSGDKK--ATVYE  334 (337)
T ss_dssp             CEEEEE------ECSSCEEEEEECTTSCEEEEEETTSC--EEEEE
T ss_pred             CEEEEc------cCCCCEEEEEEeCCCCEEEEEeCCCe--EEEEE
Confidence            998777      46788999999999999999999998  55554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.5e-36  Score=277.24  Aligned_cols=275  Identities=16%  Similarity=0.265  Sum_probs=214.8

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS  107 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd  107 (635)
                      .+++++    |+|+.||.+..         ..+++||+.+.+..+.+.+|.+.| +|++|+  |++||+|+.||+|++||
T Consensus        21 ~~~a~~----~~g~~l~~~~~---------~~v~i~~~~~~~~~~~~~~H~~~v-~~~~~sp~g~~latg~~dg~i~iwd   86 (311)
T d1nr0a1          21 VVLGNT----PAGDKIQYCNG---------TSVYTVPVGSLTDTEIYTEHSHQT-TVAKTSPSGYYCASGDVHGNVRIWD   86 (311)
T ss_dssp             CCCEEC----TTSSEEEEEET---------TEEEEEETTCSSCCEEECCCSSCE-EEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEc----CCCCEEEEEeC---------CEEEEEECCCCceeEEEcCCCCCE-EEEEEeCCCCeEeccccCceEeeee
Confidence            579999    89999988752         235579999999999999999988 999999  99999999999999999


Q ss_pred             CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeE
Q psy18018        108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVE  185 (635)
Q Consensus       108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  185 (635)
                      +.+++                   ......+.+|.++|.+++|  ++++|++++.+.                       
T Consensus        87 ~~~~~-------------------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~-----------------------  124 (311)
T d1nr0a1          87 TTQTT-------------------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGR-----------------------  124 (311)
T ss_dssp             SSSTT-------------------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCS-----------------------
T ss_pred             eeccc-------------------cccccccccccCccccccccccccccccccccc-----------------------
Confidence            88653                   2334567899999999999  778888776432                       


Q ss_pred             EeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccC
Q psy18018        186 LSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCE  265 (635)
Q Consensus       186 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~  265 (635)
                                      +..+++|++++++...++.+|...|.+++                                   
T Consensus       125 ----------------~~~~~v~~~~~~~~~~~l~~h~~~v~~v~-----------------------------------  153 (311)
T d1nr0a1         125 ----------------ERFGHVFLFDTGTSNGNLTGQARAMNSVD-----------------------------------  153 (311)
T ss_dssp             ----------------SCSEEEEETTTCCBCBCCCCCSSCEEEEE-----------------------------------
T ss_pred             ----------------ccccccccccccccccccccccccccccc-----------------------------------
Confidence                            23345555556666666778888887766                                   


Q ss_pred             ccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCc
Q psy18018        266 PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD  345 (635)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (635)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (311)
T d1nr0a1         154 --------------------------------------------------------------------------------  153 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEecCcE-EEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        346 LFGFQFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       346 ~~~~s~~~~~-l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                         |+|++.+ +++|+.|+.|++||.++++....+..|...|.++.++  ++++++++.|+.+++||.            
T Consensus       154 ---~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~------------  218 (311)
T d1nr0a1         154 ---FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG------------  218 (311)
T ss_dssp             ---ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET------------
T ss_pred             ---ccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccc------------
Confidence               4555543 6677778888888888888888888999999999886  345555555555555554            


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeee-------eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEec
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHT-------LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLS  493 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~  493 (635)
                                           .+++....       ..+|...|.+++|+  +++|++|+.||.|+|||++++++++.+.
T Consensus       219 ---------------------~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         219 ---------------------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             ---------------------TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ---------------------ccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence                                 44433332       34688999999984  6799999999999999999999999988


Q ss_pred             CCCcccccEEEEEecCCEEEEEeCCCcEEEEECC
Q psy18018        494 GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK  527 (635)
Q Consensus       494 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~  527 (635)
                      ........+.++.+++++|++++.||.|++||.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         278 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            7555556778888999999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-35  Score=286.99  Aligned_cols=244  Identities=24%  Similarity=0.394  Sum_probs=186.3

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG  426 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  426 (635)
                      ++|+|++++|++|+.||.|++|+...++.+....+|...|.++.+.                               +++
T Consensus       127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~-------------------------------~~~  175 (388)
T d1erja_         127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-------------------------------PSG  175 (388)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-------------------------------TTS
T ss_pred             EEECCCCCcceecccccccccccccccccccccccccccccccccc-------------------------------ccc
Confidence            4588888999999999999999999999999999999999988876                               344


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecC----CCcccc
Q psy18018        427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSG----RNKHQS  500 (635)
Q Consensus       427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~  500 (635)
                      ..+++++.++.+++||..+.........+...+....+  +++++++++.|+.|++||..++.....+..    ...|..
T Consensus       176 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             ccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC
Confidence            45556666666666776666666655555554443333  567999999999999999999887776643    224778


Q ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeecccee-cCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018        501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI-LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW  577 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw  577 (635)
                      .|.+++|  ++++|++++.||.|++||+.++........... ........|...|++++|+|++++|++|+.||.|++|
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vw  335 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  335 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            8999999  689999999999999999998765544332211 1223445678899999999999999999999999999


Q ss_pred             eCCCCceEEeeeeccCCCCCceEEEEE------eCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        578 DVKTGEFIRNLVSLDSGGSGGVVWRIR------ASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~~~~i~~l~------~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                      |+.+++++..+     .+|.+.|.+++      |+||+.+|++|+.||+  ++||.+
T Consensus       336 d~~~~~~~~~l-----~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~--I~iW~~  385 (388)
T d1erja_         336 DKKSGNPLLML-----QGHRNSVISVAVANGSSLGPEYNVFATGSGDCK--ARIWKY  385 (388)
T ss_dssp             ETTTCCEEEEE-----ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEE
T ss_pred             ECCCCcEEEEE-----eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE--EEEEee
Confidence            99999999998     57899999997      4679999999999998  555544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-36  Score=281.73  Aligned_cols=309  Identities=28%  Similarity=0.436  Sum_probs=250.7

Q ss_pred             eeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEE
Q psy18018          9 NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQ   88 (635)
Q Consensus         9 ~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~   88 (635)
                      +|..+| ++...|+||.++| +||+|+    |++++||+++.++        .+.|||.+++++++++.+|.+.| .+++
T Consensus         2 ~w~p~~-~~~~~L~GH~~~I-~~l~~s----p~~~~l~s~s~Dg--------~i~iWd~~~~~~~~~~~~h~~~V-~~~~   66 (317)
T d1vyhc1           2 EWIPRP-PEKYALSGHRSPV-TRVIFH----PVFSVMVSASEDA--------TIKVWDYETGDFERTLKGHTDSV-QDIS   66 (317)
T ss_dssp             CCCCCS-SCSCEEECCSSCE-EEEEEC----SSSSEEEEEESSS--------CEEEEETTTCCCCEEECCCSSCE-EEEE
T ss_pred             ccCCCC-CccEEEcCCCCCe-EEEEEc----CCCCEEEEEeCCC--------eEEEEECCCCCEEEEEeCCCCcE-EEEe
Confidence            575444 3456899999998 999999    9999999998654        44579999999999999999988 8999


Q ss_pred             Ec--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeE
Q psy18018         89 FS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV  164 (635)
Q Consensus        89 ~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v  164 (635)
                      |+  +.++++++.++.+.+|+..                     ..+....+.+|...+.++.+  +++.+++++.|+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  125 (317)
T d1vyhc1          67 FDHSGKLLASCSADMTIKLWDFQ---------------------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI  125 (317)
T ss_dssp             ECTTSSEEEEEETTSCCCEEETT---------------------SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeccccccccccccccccccccc---------------------ccccccccccccccceeeeccCCCceEEeeccCcce
Confidence            99  8899988888887777765                     34556667789999999999  89999999999999


Q ss_pred             EEEeCCCccceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCce
Q psy18018        165 KIWNPDTEECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDR  243 (635)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg  243 (635)
                      ++||+.+++.+..+..+...... ...+.+..+++++.|+.|++|+..+++.+..+.+|...+.++.+....-.      
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------  199 (317)
T d1vyhc1         126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY------  199 (317)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG------
T ss_pred             eEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeecccc------
Confidence            99999999988877766554444 44556789999999999999999999999999999999988876421000      


Q ss_pred             eEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCc
Q psy18018        244 TLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNL  323 (635)
Q Consensus       244 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (635)
                                 .                                                                    
T Consensus       200 -----------~--------------------------------------------------------------------  200 (317)
T d1vyhc1         200 -----------S--------------------------------------------------------------------  200 (317)
T ss_dssp             -----------G--------------------------------------------------------------------
T ss_pred             -----------c--------------------------------------------------------------------
Confidence                       0                                                                    


Q ss_pred             chhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCC
Q psy18018        324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADS  403 (635)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg  403 (635)
                                   ................+..+++++.|+.|++|+..+++++..+.+|...|.+++++           
T Consensus       201 -------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------  256 (317)
T d1vyhc1         201 -------------SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-----------  256 (317)
T ss_dssp             -------------GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-----------
T ss_pred             -------------eeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEC-----------
Confidence                         00000011112244567889999999999999999999999999999999888875           


Q ss_pred             cEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEE
Q psy18018        404 TVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVW  481 (635)
Q Consensus       404 ~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw  481 (635)
                                          |++++|++++.||.|++||+.+++++.++.+|...|++++++  +++|++|+.||+|++|
T Consensus       257 --------------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         257 --------------------SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             --------------------SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             --------------------CCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence                                567778888888999999999999999999999999999985  5699999999999999


Q ss_pred             E
Q psy18018        482 D  482 (635)
Q Consensus       482 d  482 (635)
                      |
T Consensus       317 d  317 (317)
T d1vyhc1         317 E  317 (317)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-34  Score=267.60  Aligned_cols=272  Identities=16%  Similarity=0.183  Sum_probs=226.3

Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE-
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF-  419 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-  419 (635)
                      ...+++++|+|+.|+.+. ++.|.+|++.+......+.+|...|.+++|+  +++|++|+.||.|++||+.++...... 
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~   97 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   97 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc
Confidence            345678999999999876 5679999999999999999999999999997  679999999999999999887543221 


Q ss_pred             ----------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CC-EEEEEeCCCcEEEEECC
Q psy18018        420 ----------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIV  484 (635)
Q Consensus       420 ----------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~  484 (635)
                                ..++++++++++++.  +..+++|++++++...++.+|...|.++.++  ++ .+++|+.|+.|++||++
T Consensus        98 ~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1          98 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence                      237889999999986  4569999999999999999999999999985  34 68899999999999999


Q ss_pred             CCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018        485 SGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS  562 (635)
Q Consensus       485 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  562 (635)
                      +++....+..   |...|.++.+  +++++++++.|+.|++||..+++....+...    ......|...|++++|+|++
T Consensus       178 ~~~~~~~~~~---~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~----~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         178 PFKFKSTFGE---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD----SLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             TBEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT----TSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccc---ccccccccccCcccccccccccccccccccccccccccccccc----ccccccccccccccccCCCC
Confidence            9999888887   8899999999  6899999999999999999998877665432    22233578899999999999


Q ss_pred             eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        563 RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       563 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      ++|++|+.||+|+|||++++++++++...  ......+.++.|+  +..|++++.||.    |..||+
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~--~~~~~~~~~~~~~--~~~l~s~s~dG~----i~~wd~  310 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVG--TRIEDQQLGIIWT--KQALVSISANGF----INFVNP  310 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECC--SSGGGCEEEEEEC--SSCEEEEETTCC----EEEEET
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECC--CCccceEEEEEec--CCEEEEEECCCE----EEEEeC
Confidence            99999999999999999999999888431  1122345555554  557899999998    555554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-34  Score=278.25  Aligned_cols=288  Identities=23%  Similarity=0.394  Sum_probs=217.4

Q ss_pred             ccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeec------------------cCcc
Q psy18018         21 LKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKG------------------HDDH   82 (635)
Q Consensus        21 l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~------------------h~~~   82 (635)
                      ..+|.+.| +||+||    |||++||+|+ ++        .+.|||..+++.+..+..                  |...
T Consensus        58 ~~~H~~~V-~~l~fs----~dg~~lasg~-d~--------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (388)
T d1erja_          58 SLDHTSVV-CCVKFS----NDGEYLATGC-NK--------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY  123 (388)
T ss_dssp             EEECSSCC-CEEEEC----TTSSEEEEEC-BS--------CEEEEETTTCCEEEEECC-----------------CCCCB
T ss_pred             eCCCCCcE-EEEEEC----CCCCEEEEEe-CC--------eEEEEEecccceEeeecccccccccccccccccccCCCCC
Confidence            34899999 999999    9999999986 32        345799999888776653                  4444


Q ss_pred             eEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEE
Q psy18018         83 VITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG  158 (635)
Q Consensus        83 vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~  158 (635)
                      | ++++|+  +++|++|+.||.|++||..                     +++.+..+.+|...|.++.+  ++..++++
T Consensus       124 V-~~l~~s~~~~~l~s~~~dg~v~i~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  181 (388)
T d1erja_         124 I-RSVCFSPDGKFLATGAEDRLIRIWDIE---------------------NRKIVMILQGHEQDIYSLDYFPSGDKLVSG  181 (388)
T ss_dssp             E-EEEEECTTSSEEEEEETTSCEEEEETT---------------------TTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             E-EEEEECCCCCcceeccccccccccccc---------------------cccccccccccccccccccccccccccccc
Confidence            5 899998  8899999988888888765                     45667778899999999999  88899999


Q ss_pred             eCCCeEEEEeCCCccceeeccccceeEEeeecc-CCCEEEEEeCCCcEEEEECCCCeEEEEE-------eCCCCCeEEEE
Q psy18018        159 AYDYMVKIWNPDTEECLHAELQETEVELSHGYA-LRSRIVSGSDDNTLKVWSATTGKCLRTL-------IGHTGGVWSSQ  230 (635)
Q Consensus       159 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~~~  230 (635)
                      +.++.+++||..+..................++ ++..+++++.|+.|++||..++..+..+       .+|.+.|.++.
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             ccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence            999999999999988777766666655555554 4678999999999999999998877665       46889999999


Q ss_pred             ee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        231 MA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       231 ~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      |+  +++|++++.||.|++||+...............                                           
T Consensus       262 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------------------------  298 (388)
T d1erja_         262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG-------------------------------------------  298 (388)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC----------------------------------------------------------
T ss_pred             ECCCCCEEEEEECCCcEEEEeccCCcccccccccccc-------------------------------------------
Confidence            95  789999999999999998764321100000000                                           


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                                             ........+......++++|++++|++|+.||.|++||+.+++++..+++|...|.+
T Consensus       299 -----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~  355 (388)
T d1erja_         299 -----------------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS  355 (388)
T ss_dssp             -----------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             -----------------------ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence                                   000001112233456779999999999999999999999999999999999999999


Q ss_pred             EEEe--------CCEEEEEeCCCcEEEEEc
Q psy18018        389 MELR--------NNILVSGNADSTVKVWDI  410 (635)
Q Consensus       389 l~~~--------~~~l~s~~~dg~i~iwd~  410 (635)
                      +++.        +.+|++++.||.|++|++
T Consensus       356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         356 VAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            9874        234455555555555544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-34  Score=270.13  Aligned_cols=287  Identities=20%  Similarity=0.318  Sum_probs=237.6

Q ss_pred             CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018         16 KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR   93 (635)
Q Consensus        16 ~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~   93 (635)
                      +..++|+||.+.| +||+|+    |++++||+++.++.        +.|||..+++.++.+.+|...| .+++|+  +++
T Consensus        46 ~~~~tL~GH~~~I-~~l~~s----~~~~~l~sgs~Dg~--------v~iWd~~~~~~~~~~~~~~~~v-~~v~~~~~~~~  111 (340)
T d1tbga_          46 RTRRTLRGHLAKI-YAMHWG----TDSRLLVSASQDGK--------LIIWDSYTTNKVHAIPLRSSWV-MTCAYAPSGNY  111 (340)
T ss_dssp             CEEEEECCCSSCE-EEEEEC----TTSSEEEEEETTTE--------EEEEETTTTEEEEEEECSCSCE-EEEEECTTSSE
T ss_pred             eeeEEECCCCCCE-EEEEEC----CCCCEEEEEECCCc--------eeeeecccceeEEEEecccccE-EeeEeecccee
Confidence            3457899999999 999999    99999999987544        4469999999999999999988 899999  999


Q ss_pred             EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCc
Q psy18018         94 IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTE  172 (635)
Q Consensus        94 l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~  172 (635)
                      +++++.|+.+++|+.....                 ...+....+.+|......... .+..+.....|.....|.....
T Consensus       112 l~~~~~d~~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (340)
T d1tbga_         112 VACGGLDNICSIYNLKTRE-----------------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             EEEEETTCCEEEEESSSSC-----------------SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred             eeeecccceeecccccccc-----------------cccccceecccccccccccccccccccccccccccccccccccc
Confidence            9999999999999987543                 234566778889888887777 7888999999999999998877


Q ss_pred             cceeecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEec
Q psy18018        173 ECLHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS  249 (635)
Q Consensus       173 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~  249 (635)
                      ......... .........+....+++++.|+.|++||+.+++++.++.+|...|.+++|+  +++|++++.||.|++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~  254 (340)
T d1tbga_         175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD  254 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            655544444 444555556677889999999999999999999999999999999999994  78999999999999999


Q ss_pred             ccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhh
Q psy18018        250 NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKC  329 (635)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (635)
                      +........                                                                       
T Consensus       255 ~~~~~~~~~-----------------------------------------------------------------------  263 (340)
T d1tbga_         255 LRADQELMT-----------------------------------------------------------------------  263 (340)
T ss_dssp             TTTTEEEEE-----------------------------------------------------------------------
T ss_pred             ecccccccc-----------------------------------------------------------------------
Confidence            875432110                                                                       


Q ss_pred             hhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEE
Q psy18018        330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKV  407 (635)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~i  407 (635)
                           ............++|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+  +.+|++++.||.|++
T Consensus       264 -----~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         264 -----YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             -----ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             -----cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence                 0001122334457799999999999999999999999999999999999999999997  457888888888888


Q ss_pred             EE
Q psy18018        408 WD  409 (635)
Q Consensus       408 wd  409 (635)
                      ||
T Consensus       339 Wd  340 (340)
T d1tbga_         339 WN  340 (340)
T ss_dssp             EC
T ss_pred             eC
Confidence            86

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-33  Score=266.29  Aligned_cols=261  Identities=23%  Similarity=0.398  Sum_probs=225.0

Q ss_pred             EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee-------
Q psy18018        347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL-------  417 (635)
Q Consensus       347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-------  417 (635)
                      ++|+|++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+  +.++++++.|+.+.+|+........       
T Consensus        61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  140 (340)
T d1tbga_          61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred             EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc
Confidence            4478888999999999999999999999999999999999999997  6799999999999999976653222       


Q ss_pred             -----EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeE
Q psy18018        418 -----MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       418 -----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~  490 (635)
                           ........+..+.....+.....+.............+...+.....  .+.++++++.|+.|++||+++++++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~  220 (340)
T d1tbga_         141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ  220 (340)
T ss_dssp             CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE
Confidence                 12234456677888889999999999888777777777777777766  46699999999999999999999999


Q ss_pred             EecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      .+..   |...|++++|  ++++|++++.|+.|++||+...+....+...         .+...|++++|+|++++|++|
T Consensus       221 ~~~~---h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~~g  288 (340)
T d1tbga_         221 TFTG---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---------NIICGITSVSFSKSGRLLLAG  288 (340)
T ss_dssp             EECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------TCCSCEEEEEECSSSCEEEEE
T ss_pred             EEeC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc---------cccCceEEEEECCCCCEEEEE
Confidence            9987   8899999999  6899999999999999999988766554322         246679999999999999999


Q ss_pred             cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018        569 SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLL  626 (635)
Q Consensus       569 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~  626 (635)
                      +.||.|++||+.+++.+..+     .+|.++|++++|+||+++|++|+.||.  ++||
T Consensus       289 ~~dg~i~iwd~~~~~~~~~~-----~~H~~~V~~l~~s~d~~~l~s~s~Dg~--v~iW  339 (340)
T d1tbga_         289 YDDFNCNVWDALKADRAGVL-----AGHDNRVSCLGVTDDGMAVATGSWDSF--LKIW  339 (340)
T ss_dssp             ETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTSC--EEEE
T ss_pred             ECCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEeCCCCEEEEEccCCE--EEEe
Confidence            99999999999999999998     588999999999999999999999998  5555

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-33  Score=257.45  Aligned_cols=284  Identities=31%  Similarity=0.542  Sum_probs=228.9

Q ss_pred             CCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEec
Q psy18018         72 DPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYD  151 (635)
Q Consensus        72 ~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  151 (635)
                      .++.+.+|...| +|++|++++||||+.||+|+|||+.                     +++++.++.+|.++|++++|+
T Consensus         7 ~i~~~~~~~~~V-~c~~~d~~~l~sgs~Dg~i~vWd~~---------------------~~~~~~~l~~H~~~V~~v~~~   64 (293)
T d1p22a2           7 RIHCRSETSKGV-YCLQYDDQKIVSGLRDNTIKIWDKN---------------------TLECKRILTGHTGSVLCLQYD   64 (293)
T ss_dssp             CEECCCSSCCCE-EEEECCSSEEEEEESSSCEEEEESS---------------------SCCEEEEECCCSSCEEEEECC
T ss_pred             EEeccCCCCCCE-EEEEEcCCEEEEEeCCCeEEEEECC---------------------CCcEEEEEecCCCCEeeeecc
Confidence            344456777777 8999999999999999999998876                     456778899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCe---EEEEEeCCCCCeEE
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGK---CLRTLIGHTGGVWS  228 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~  228 (635)
                      +++|++++.|++|++|++..+.............. ........++++..++.+.+|+..+..   ....+..|...+..
T Consensus        65 ~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  143 (293)
T d1p22a2          65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  143 (293)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             cceeecccccccccccccccccccccccccccccc-cccccccceeecccccceeEeecccccccccccccccccccccc
Confidence            99999999999999999999887666555444333 334556789999999999999988754   34566789999999


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      +.+....+++++.|+.+++||..+.....                                                   
T Consensus       144 ~~~~~~~~~~~s~d~~i~~~d~~~~~~~~---------------------------------------------------  172 (293)
T d1p22a2         144 VDFDDKYIVSASGDRTIKVWNTSTCEFVR---------------------------------------------------  172 (293)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTCCEEE---------------------------------------------------
T ss_pred             ceecccccccccCCCceeeecCCCCcEEE---------------------------------------------------
Confidence            99999999999999999999987643211                                                   


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG  388 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~  388 (635)
                                                   ....+...+..+++++..+++++.||.|++||+.+...+....+|...+..
T Consensus       173 -----------------------------~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  223 (293)
T d1p22a2         173 -----------------------------TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC  223 (293)
T ss_dssp             -----------------------------EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             -----------------------------EEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee
Confidence                                         011223344557778889999999999999999999999999999988888


Q ss_pred             EEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCE
Q psy18018        389 MELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI  468 (635)
Q Consensus       389 l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  468 (635)
                      +..++.+|++++.||.|++||+.......                        .......+..+.+|.+.|.++++++++
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~------------------------~~~~~~~~~~~~~H~~~V~~v~~d~~~  279 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPR------------------------APAGTLCLRTLVEHSGRVFRLQFDEFQ  279 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTT------------------------SCTTTTEEEEECCCSSCCCCEEECSSC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCcccc------------------------ccCCceeeEEecCCCCCEEEEEEcCCE
Confidence            87778888888888888888875432210                        112345677889999999999999999


Q ss_pred             EEEEeCCCcEEEEE
Q psy18018        469 LVSGNADSTVKVWD  482 (635)
Q Consensus       469 l~s~~~dg~i~iwd  482 (635)
                      |++++.||+|++||
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEecCCEEEEeC
Confidence            99999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-32  Score=253.88  Aligned_cols=282  Identities=15%  Similarity=0.202  Sum_probs=211.8

Q ss_pred             CeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc-ccceeEEeeeccCCCEEEEEeCCCcEEEE
Q psy18018        132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVW  208 (635)
Q Consensus       132 ~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vw  208 (635)
                      |+..+.+.||.++|++++|  ++++|+||+.||+|++||+.+++.+..+. .+...+..+.+.+++.+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            5678899999999999999  89999999999999999999998887764 34555566666667778888999999999


Q ss_pred             ECCCCeE---EEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccc
Q psy18018        209 SATTGKC---LRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD  283 (635)
Q Consensus       209 d~~~~~~---~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (635)
                      +......   ......+...+.++.+.  +..+ +++.++.+++|+......                            
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~~~~i~~~~~~~~~~----------------------------  132 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIAIYSHGKLTE----------------------------  132 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE-EEEESSEEEEEETTEEEE----------------------------
T ss_pred             ccCCccccccccccccccccccccccccccccc-cccccccccccccccccc----------------------------
Confidence            9765322   12234577788888884  4444 455567899998543210                            


Q ss_pred             eeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC
Q psy18018        284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT  363 (635)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  363 (635)
                                                                            ....+...+++++|+++++++|+.||
T Consensus       133 ------------------------------------------------------~~~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2         133 ------------------------------------------------------VPISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             ------------------------------------------------------EECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ------------------------------------------------------cccccccccccccccccccccccccc
Confidence                                                                  01123344577899999999999999


Q ss_pred             eEEEEEccCCceEE-eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEe
Q psy18018        364 SIRVWEAESGNLRH-TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE  442 (635)
Q Consensus       364 ~i~v~~~~~~~~~~-~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  442 (635)
                      .|++||+.+++... ....|...|.+++++                               |+++++++++.|+.|++||
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-------------------------------~~~~~l~~~~~d~~i~~~~  207 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAFS-------------------------------NNGAFLVATDQSRKVIPYS  207 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccc-------------------------------ccccccccccccccccccc
Confidence            99999998776543 345678888888775                               4455555666666666666


Q ss_pred             CCCCcee---eeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEe
Q psy18018        443 AESGNLR---HTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSS  516 (635)
Q Consensus       443 ~~~~~~~---~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~  516 (635)
                      +.++...   ..+.+|...|.++++  ++++|++|+.||.|++||+.++.....+.....+...+.++.+ ++++|++++
T Consensus       208 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s  287 (299)
T d1nr0a2         208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG  287 (299)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe
Confidence            6555433   345678999999988  4669999999999999999887655444433345667887777 789999999


Q ss_pred             CCCcEEEEECC
Q psy18018        517 DDGTVKLWDVK  527 (635)
Q Consensus       517 ~d~~i~vwd~~  527 (635)
                      .|++|++||+.
T Consensus       288 ~D~~i~iWdl~  298 (299)
T d1nr0a2         288 QDSNIKFWNVP  298 (299)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCEEEEEecc
Confidence            99999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-32  Score=261.99  Aligned_cols=327  Identities=17%  Similarity=0.152  Sum_probs=214.7

Q ss_pred             ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc--CCEEEEeeCC
Q psy18018         25 DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS--GSRIVSGSDD  100 (635)
Q Consensus        25 ~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d  100 (635)
                      .++| +|++||    |||++||+++.++        .+.|||..+++  ++..|++|.+.| ++++|+  +++|++++.|
T Consensus         7 ~~pI-t~~~~s----~dg~~la~~~~~~--------~i~iw~~~~~~~~~~~~l~gH~~~V-~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_           7 VEPI-SCHAWN----KDRTQIAICPNNH--------EVHIYEKSGNKWVQVHELKEHNGQV-TGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             SSCC-CEEEEC----TTSSEEEEECSSS--------EEEEEEEETTEEEEEEEEECCSSCE-EEEEEETTTTEEEEEETT
T ss_pred             CCCe-EEEEEC----CCCCEEEEEeCCC--------EEEEEECCCCCEEEEEEecCCCCCE-EEEEECCCCCEEEEEECC
Confidence            3677 999999    9999999987643        44569997764  667899999988 999999  9999999999


Q ss_pred             CcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee-
Q psy18018        101 NTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA-  177 (635)
Q Consensus       101 ~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~-  177 (635)
                      ++|+|||+.++.                   .++...+.+|...|++++|  +++.|++++.|+++++|+++....... 
T Consensus        73 ~~i~vWd~~~~~-------------------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          73 RNAYVWTLKGRT-------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             SCEEEEEEETTE-------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             CeEEEEeecccc-------------------cccccccccccccccccccccccccceeecccCcceeeeeecccccccc
Confidence            999999986543                   2445566789999999999  899999999999999999876654322 


Q ss_pred             ---cccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccce
Q psy18018        178 ---ELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER  253 (635)
Q Consensus       178 ---~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~  253 (635)
                         ...+ ..+....+.+++.+|++++.|+.+++||............                        ..|+....
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~------------------------~~~~~~~~  189 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP------------------------TPWGSKMP  189 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC------------------------BTTBSCCC
T ss_pred             cccccccccccccccccccccceeccccCcEEEEEeeccCcccccccc------------------------cccccccc
Confidence               1222 2333444445567778888888888888654322111000                        00000000


Q ss_pred             eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018        254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA  333 (635)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (635)
                      .                                    .                                        ..
T Consensus       190 ~------------------------------------~----------------------------------------~~  193 (371)
T d1k8kc_         190 F------------------------------------G----------------------------------------EL  193 (371)
T ss_dssp             T------------------------------------T----------------------------------------CE
T ss_pred             c------------------------------------e----------------------------------------ee
Confidence            0                                    0                                        00


Q ss_pred             hhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccC
Q psy18018        334 TLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       334 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~  412 (635)
                      ......+......++|+|++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+ +..+++++.|+.+++|....
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             eeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            00001112223456799999999999999999999999999999999999999999997 44666667788888887765


Q ss_pred             CcceeEEEEE-eeCCcEEEEE--------eCCCcEEEEeCCCCceeeeeccCCccEEEEEec------CCEEEEEeCCCc
Q psy18018        413 GTKKLMFRIC-LFDGVHVVSG--------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR------NNILVSGNADST  477 (635)
Q Consensus       413 ~~~~~~~~~~-~~~~~~l~~~--------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~  477 (635)
                      .......... .........+        ..+........ ..........|.+.|+++++.      ...+++++.||.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~  352 (371)
T d1k8kc_         274 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  352 (371)
T ss_dssp             TTTEEEECCCCCCC--------CHHHHHHHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             CCceEEEeeeecCccccccccccceeeEecccceeEEecc-ccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe
Confidence            5443322110 0000000000        00111111100 001111223589999998872      137999999999


Q ss_pred             EEEEECCC
Q psy18018        478 VKVWDIVS  485 (635)
Q Consensus       478 i~iwd~~~  485 (635)
                      |++||+++
T Consensus       353 v~iW~~~~  360 (371)
T d1k8kc_         353 MSIWDVRS  360 (371)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeCCc
Confidence            99999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-31  Score=247.45  Aligned_cols=279  Identities=34%  Similarity=0.565  Sum_probs=226.4

Q ss_pred             eEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC
Q psy18018        133 ECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT  212 (635)
Q Consensus       133 ~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  212 (635)
                      +.+....+|...|+|++||+++||||+.||+|++||+.+++++..+..+...+..+.+ ++++|++++.|+.|++|++..
T Consensus         6 ~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~-~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSS
T ss_pred             EEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec-ccceeeccccccccccccccc
Confidence            3455566889999999999999999999999999999999999998877666666555 578999999999999999999


Q ss_pred             CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018        213 GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL  292 (635)
Q Consensus       213 ~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (635)
                      +........+.............++++..++.+++|+.........                                  
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  130 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL----------------------------------  130 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE----------------------------------
T ss_pred             ccccccccccccccccccccccceeecccccceeEeeccccccccc----------------------------------
Confidence            9988888777777777777889999999999999999765321100                                  


Q ss_pred             eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC
Q psy18018        293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES  372 (635)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~  372 (635)
                                                                 ......+...+....+....+++++.|+.|++||..+
T Consensus       131 -------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~  167 (293)
T d1p22a2         131 -------------------------------------------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST  167 (293)
T ss_dssp             -------------------------------------------EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred             -------------------------------------------cccccccccccccceecccccccccCCCceeeecCCC
Confidence                                                       0011223344455667778889999999999999999


Q ss_pred             CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee
Q psy18018        373 GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL  452 (635)
Q Consensus       373 ~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  452 (635)
                      ++.+..+.++...+..+.+++..++++                                 +.|+.|++||+++.+.+...
T Consensus       168 ~~~~~~~~~~~~~v~~~~~~~~~l~~~---------------------------------~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         168 CEFVRTLNGHKRGIACLQYRDRLVVSG---------------------------------SSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             CCEEEEEECCSSCEEEEEEETTEEEEE---------------------------------ETTSCEEEEETTTCCEEEEE
T ss_pred             CcEEEEEcccccccccccCCCCeEEEe---------------------------------cCCCEEEEEecccceeeeee
Confidence            999999999888887777665555554                                 45555566666667777778


Q ss_pred             ccCCccEEEEEecCCEEEEEeCCCcEEEEECCC---------CceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEE
Q psy18018        453 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVS---------GQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKL  523 (635)
Q Consensus       453 ~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v  523 (635)
                      .+|...+..+..++.+|++++.||.|++||+..         ..++..+.+   |...|++++|++++|++++.||+|++
T Consensus       215 ~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---H~~~V~~v~~d~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRVFRLQFDEFQIVSSSHDDTILI  291 (293)
T ss_dssp             CCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCCCCEEECSSCEEECCSSSEEEE
T ss_pred             cccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC---CCCCEEEEEEcCCEEEEEecCCEEEE
Confidence            888889999999999999999999999999743         345566666   88999999999999999999999999


Q ss_pred             EE
Q psy18018        524 WD  525 (635)
Q Consensus       524 wd  525 (635)
                      ||
T Consensus       292 WD  293 (293)
T d1p22a2         292 WD  293 (293)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.2e-32  Score=251.40  Aligned_cols=263  Identities=15%  Similarity=0.188  Sum_probs=195.9

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcc-----------
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTK-----------  415 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~-----------  415 (635)
                      |+|++++|++|+.||.|++||+.+++.+..+. .|...|.+++|+ ...+++++.|+.+++|+......           
T Consensus        20 ~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~   99 (299)
T d1nr0a2          20 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS   99 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccc
Confidence            77788888888888888899888888877774 688899999997 34677888899999999754321           


Q ss_pred             -eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018        416 -KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSG  494 (635)
Q Consensus       416 -~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  494 (635)
                       ......+++++..++++ .++.+.+|+..  +.......+.....++.++++++++++.|+.|++||+++++.......
T Consensus       100 ~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2         100 SQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             SCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccccccccc-ccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             11223467788866655 45689999854  344444444444444445678999999999999999987765442211


Q ss_pred             CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC
Q psy18018        495 RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG  572 (635)
Q Consensus       495 ~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  572 (635)
                        .|...|+++++  ++++|++++.|+.|++||+.++........        ...|...|++++|+|++++|++|+.||
T Consensus       177 --~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--------~~~h~~~v~~l~~s~~~~~l~sgs~dg  246 (299)
T d1nr0a2         177 --VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS--------WTFHTAKVACVSWSPDNVRLATGSLDN  246 (299)
T ss_dssp             --ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC--------CCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             --ccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccceEEEcCCC
Confidence              27788999999  589999999999999999988765543322        123678999999999999999999999


Q ss_pred             eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018        573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD  629 (635)
Q Consensus       573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d  629 (635)
                      .|++||+++++....+..  ...+...+.++.| +++++|++++.||.  +++|.+.
T Consensus       247 ~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~-~~~~~l~s~s~D~~--i~iWdl~  298 (299)
T d1nr0a2         247 SVIVWNMNKPSDHPIIIK--GAHAMSSVNSVIW-LNETTIVSAGQDSN--IKFWNVP  298 (299)
T ss_dssp             CEEEEETTCTTSCCEEET--TSSTTSCEEEEEE-EETTEEEEEETTSC--EEEEECC
T ss_pred             EEEEEECCCCCcceEEEe--cCCCCCcEEEEEE-CCCCEEEEEeCCCE--EEEEecc
Confidence            999999988765333321  1234566777655 56788999999998  6777653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-30  Score=248.18  Aligned_cols=269  Identities=17%  Similarity=0.138  Sum_probs=211.0

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCc--eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL  417 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~  417 (635)
                      .++.+++|+|++++|++|+.+|.|++|+..+++  .+..+++|...|.+++|+  +++|++++.|+.|++||+.++....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            557889999999999999999999999998775  567789999999999997  6799999999999999998664332


Q ss_pred             E-----------EEEEeeCCcEEEEEeCCCcEEEEeCCCCce----eeeeccCCccEEEEEec--CCEEEEEeCCCcEEE
Q psy18018        418 M-----------FRICLFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR--NNILVSGNADSTVKV  480 (635)
Q Consensus       418 ~-----------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~i  480 (635)
                      .           ...++|+++.+++++.|+.+++|++.....    ......|...|.+++++  +.+|++|+.|+.+++
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v  167 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  167 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence            2           224789999999999999999999876543    34455788999999885  569999999999999


Q ss_pred             EECCCCc------------------eeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeecccee
Q psy18018        481 WDIVSGQ------------------CLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI  540 (635)
Q Consensus       481 wd~~~~~------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  540 (635)
                      |+.....                  .+.....   |...|.+++|  ++++|++++.|+.|++||+.+++.+..+..   
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---  241 (371)
T d1k8kc_         168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS---  241 (371)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC---
T ss_pred             EeeccCccccccccccccccccceeeeeeccC---ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec---
Confidence            9986432                  2333333   7888999998  689999999999999999999887766654   


Q ss_pred             cCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeee------------------------------
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVS------------------------------  590 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~------------------------------  590 (635)
                              |..+|.+++|+||+++|++|. |+.+++|..........+..                              
T Consensus       242 --------~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (371)
T d1k8kc_         242 --------ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  312 (371)
T ss_dssp             --------SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             --------ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEec
Confidence                    578899999999999998766 66666665433221111100                              


Q ss_pred             ------ccCCCCCceEEEEEeCCCC----eEEEEccCCCeeEeEEEE
Q psy18018        591 ------LDSGGSGGVVWRIRASETK----LVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       591 ------~~~~~~~~~i~~l~~s~d~----~~l~~~~~dg~~~~~l~~  627 (635)
                            .....|.+.|+++++.+++    ..+++++.||.  +++|.
T Consensus       313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~--v~iW~  357 (371)
T d1k8kc_         313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--MSIWD  357 (371)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--EEEEE
T ss_pred             cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe--EEEEe
Confidence                  0012378889999997754    46899999998  45553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=234.48  Aligned_cols=279  Identities=16%  Similarity=0.208  Sum_probs=214.6

Q ss_pred             CCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEE
Q psy18018         70 IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQ  149 (635)
Q Consensus        70 ~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~  149 (635)
                      .+++++|+||.+.| +|++|+.  |+||+.||+|++||+.++                          ..+|...|.+++
T Consensus         3 ~~~i~~l~gH~~~I-~~l~~s~--l~sgs~Dg~v~~Wd~~~~--------------------------~~~h~~~V~~~~   53 (287)
T d1pgua2           3 DEVLKTISGHNKGI-TALTVNP--LISGSYDGRIMEWSSSSM--------------------------HQDHSNLIVSLD   53 (287)
T ss_dssp             EEEEEEECCCSSCE-EEEETTT--TEEEETTSCEEETTTTEE--------------------------ECCCCSCEEEEE
T ss_pred             cceeEEECCCCCce-EEEEECc--EEEEeCCCeEEEEECCCC--------------------------CCCCCCCEEEEE
Confidence            35678999999998 9999976  899999999999987632                          247999999999


Q ss_pred             e-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018        150 Y-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS  228 (635)
Q Consensus       150 ~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  228 (635)
                      + ++..+++++.|+++++|++...+..      .. .......++..++..+.++.+.+|+..+++.+..+.. ..++.+
T Consensus        54 ~~~~~~~~s~s~D~~v~~w~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  125 (287)
T d1pgua2          54 NSKAQEYSSISWDDTLKVNGITKHEFG------SQ-PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSPGSA  125 (287)
T ss_dssp             CCSTTCCEEEETTTEEEETTEEEEECS------SC-EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEE
T ss_pred             ecCCCeEEEEeeccccccccccccccc------cc-eeeeeeccCCceEEEeecccceeeeccceeeeeeccc-cceeee
Confidence            9 7788999999999999997654321      11 2233445566777777888899999999999888764 456777


Q ss_pred             EEeeCCEEEEeeCc-eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHh
Q psy18018        229 SQMAGNIIISGSTD-RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR  307 (635)
Q Consensus       229 ~~~~~~~l~s~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (635)
                      +..+++.+++++.| +.+++|++........                                                 
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~-------------------------------------------------  156 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD-------------------------------------------------  156 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEE-------------------------------------------------
T ss_pred             eeccCcceeeeccccceeeeeeccccceeee-------------------------------------------------
Confidence            88888888888776 4799999765432110                                                 


Q ss_pred             hcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE-eeeCCCcce
Q psy18018        308 AAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQSLT  386 (635)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~-~~~~~~~~v  386 (635)
                                                  ...........++|+|++.+|++|+.+|.|++||+.+++... .+.+|...|
T Consensus       157 ----------------------------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         157 ----------------------------LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             ----------------------------CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             ----------------------------eeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence                                        001122334567899999999999999999999999887654 467899999


Q ss_pred             eEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC-CceeeeeccCCccEEEEEec
Q psy18018        387 SGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELR  465 (635)
Q Consensus       387 ~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~  465 (635)
                      .+++|++....                     ......++.++++|+.|++|++||+++ .+.+..+.+|...|+++.+.
T Consensus       209 ~~~~~~p~~~~---------------------~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         209 NAISWKPAEKG---------------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             EEEEECCCC---------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             ceeeecccccc---------------------cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence            99998743111                     111235677899999999999999876 56677788999999999984


Q ss_pred             -CCEEEEEeCCCcEEEEEC
Q psy18018        466 -NNILVSGNADSTVKVWDI  483 (635)
Q Consensus       466 -~~~l~s~~~dg~i~iwd~  483 (635)
                       +..+++++.|+.|++|++
T Consensus       268 ~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         268 TPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEECCCeEEEEEE
Confidence             458999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=237.24  Aligned_cols=284  Identities=17%  Similarity=0.207  Sum_probs=209.2

Q ss_pred             EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC--CCCceeeccCcceEEEEEEc----CCEEEEeeCCCcE
Q psy18018         30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI--KDPKVLKGHDDHVITCLQFS----GSRIVSGSDDNTL  103 (635)
Q Consensus        30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~--~~~~~l~~h~~~vi~~~~~s----~~~l~s~~~d~~v  103 (635)
                      ++++|+    |+|..||.+..+       ...+..||....  .....+.+|....+++++|+    +++||+|+.||+|
T Consensus        21 t~l~~~----~~~~~la~~~~~-------~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i   89 (325)
T d1pgua1          21 THLSYD----PTTNAIAYPCGK-------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   89 (325)
T ss_dssp             CCCEEE----TTTTEEEEEETT-------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             EEEEEC----CCCCEEEEEeCC-------CEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCE
Confidence            689999    899999987543       233445776544  34567789876656999997    6899999999999


Q ss_pred             EEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC--CCeEEEEeCCCccceeecc
Q psy18018        104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY--DYMVKIWNPDTEECLHAEL  179 (635)
Q Consensus       104 ~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~  179 (635)
                      +|||+..++..       ..+      .......+..|.++|.+++|  ++++|++++.  ++.+++|+.++++.+..+.
T Consensus        90 ~iWd~~~~~~~-------~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (325)
T d1pgua1          90 IVWGWTFDKES-------NSV------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS  156 (325)
T ss_dssp             EEEEEEEEGGG-------TEE------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred             EEeeecCCcce-------eee------ecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee
Confidence            99998654321       000      01223456689999999999  8888887764  6789999999999888887


Q ss_pred             ccceeEEeeecc-CCC-EEEEEeCCCcEEEEECCCCeEEEEEeC---CCCCeEEEEeeCCEEEEeeCceeEEEeccccee
Q psy18018        180 QETEVELSHGYA-LRS-RIVSGSDDNTLKVWSATTGKCLRTLIG---HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERI  254 (635)
Q Consensus       180 ~~~~~~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~  254 (635)
                      .+......+.+. .+. .+++++.|+.+++||...++....+..   |...|.++                         
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v-------------------------  211 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV-------------------------  211 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE-------------------------
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe-------------------------
Confidence            766555544444 343 477888999999999887776655432   33334433                         


Q ss_pred             eeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhh
Q psy18018        255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT  334 (635)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (635)
                                                                                                      
T Consensus       212 --------------------------------------------------------------------------------  211 (325)
T d1pgua1         212 --------------------------------------------------------------------------------  211 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccccccCCCceEEEEec-CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCC
Q psy18018        335 LHRNKKTHVPDLFGFQFD-GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG  413 (635)
Q Consensus       335 ~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  413 (635)
                                   +|+|+ +.++++++.|+.|++||..+++.+..+.+|...+.++.++                     
T Consensus       212 -------------~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s---------------------  257 (325)
T d1pgua1         212 -------------EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA---------------------  257 (325)
T ss_dssp             -------------EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE---------------------
T ss_pred             -------------eeccccceeccccccccceeeeeeccccccccccccccccccceee---------------------
Confidence                         46774 5778888999999999999999999999888776554432                     


Q ss_pred             cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCcc----EEEEEec-CCEEEEEeCCCcEEEEEC
Q psy18018        414 TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL----TSGMELR-NNILVSGNADSTVKVWDI  483 (635)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----v~~~~~~-~~~l~s~~~dg~i~iwd~  483 (635)
                             ...+++++|++++.|+.|++||+++++++..+..|...    ..++.+. +.++++++.||.|++||+
T Consensus       258 -------~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         258 -------LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -------EEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             -------eeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence                   12257778899999999999999999988887765543    3345554 458999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-28  Score=231.39  Aligned_cols=263  Identities=18%  Similarity=0.202  Sum_probs=208.2

Q ss_pred             CCceEEEEecCcEEEEecCCC-eEEEEEccCC--ceEEeeeCCC-cceeEEEEe----CCEEEEEeCCCcEEEEEccCCc
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDT-SIRVWEAESG--NLRHTLMGHQ-SLTSGMELR----NNILVSGNADSTVKVWDIVSGT  414 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg-~i~v~~~~~~--~~~~~~~~~~-~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~  414 (635)
                      ....++|+|+++.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+    +.+|++++.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            345678999999999886554 3566665433  3466777875 579999996    3589999999999999987654


Q ss_pred             cee-----------------EEEEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEE
Q psy18018        415 KKL-----------------MFRICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSG  472 (635)
Q Consensus       415 ~~~-----------------~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~  472 (635)
                      ...                 ....++++++++++++.  ++.+.+|+.++++.+..+.+|...|.++.+++   .+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            221                 12236789999888764  67899999999999999999999999999853   368899


Q ss_pred             eCCCcEEEEECCCCceeEEecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEec
Q psy18018        473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY  549 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  549 (635)
                      +.|+.+++||....+....+.....|...|.+++|+   +.++++++.|+.|++||+++++.+..+..           |
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-----------~  247 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED-----------D  247 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-----------T
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc-----------c
Confidence            999999999999988888877767788899999993   68999999999999999999998877765           4


Q ss_pred             cCceeccccc---CCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCce--EEEEEeCCCCeEEEEccCCCe
Q psy18018        550 SQPLLCPHLQ---FNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGV--VWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       550 ~~~v~~~~~s---~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ..++.++.|+   ||+++|++++.|+.|+|||+++++++..+..   ..+...  ..++.+.+++ +|++++.||.
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~l~s~s~dg~  319 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL---DKQQLGNQQVGVVATGNG-RIISLSLDGT  319 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CTTCGGGCEEEEEEEETT-EEEEEETTSC
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe---cCCcccCeEEEEEECCCC-EEEEEECCCE
Confidence            5566666666   7899999999999999999999999988753   223323  3344444444 6788999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.2e-29  Score=228.55  Aligned_cols=178  Identities=14%  Similarity=0.176  Sum_probs=138.9

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCC-cEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018        429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADS-TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF  507 (635)
Q Consensus       429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  507 (635)
                      ++....++.+.+|+..+++....+.. ...+.++.++++.+++++.|+ .+++|++...+....+..  .+...+++++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~  170 (287)
T d1pgua2          94 TAVLTNDDDLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISI  170 (287)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS--CCSSCEEEEEE
T ss_pred             eEEEeecccceeeeccceeeeeeccc-cceeeeeeccCcceeeeccccceeeeeeccccceeeeeee--ccCCceeEEEe
Confidence            33445566688888888888777664 345678888888888888775 699999987665555443  36778999999


Q ss_pred             --cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC----------CeEEEEecCCCeEE
Q psy18018        508 --NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN----------SRFVITSSDDGTVK  575 (635)
Q Consensus       508 --~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~d~~v~  575 (635)
                        ++.+|++++.||.|++||+.+++.......          .|...|.+++|+|+          +.+|++|+.|++|+
T Consensus       171 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWA----------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEECCSC----------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             ccCccccccccccccccceeeccccccccccc----------ccccccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence              689999999999999999998875543222          36778888888764          56899999999999


Q ss_pred             EEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018        576 LWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV  627 (635)
Q Consensus       576 iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~  627 (635)
                      |||+++ ++.+..+     .+|.+.|++++|+|+++ |++++.||.  +++|.
T Consensus       241 iw~~~~~~~~~~~~-----~~h~~~V~~v~~~~~~~-l~s~g~D~~--v~iW~  285 (287)
T d1pgua2         241 IYSVKRPMKIIKAL-----NAHKDGVNNLLWETPST-LVSSGADAC--IKRWN  285 (287)
T ss_dssp             EEESSCTTCCEEET-----TSSTTCEEEEEEEETTE-EEEEETTSC--EEEEE
T ss_pred             EEECCCCCeEEEEe-----CCCCCCeEEEEECCCCE-EEEEECCCe--EEEEE
Confidence            999977 4455555     58999999999999875 778889998  66664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6e-28  Score=233.14  Aligned_cols=334  Identities=12%  Similarity=0.145  Sum_probs=206.5

Q ss_pred             EEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceee------cccc-ce---eEEee--ec--cCCCEEEEEeC
Q psy18018        136 HVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHA------ELQE-TE---VELSH--GY--ALRSRIVSGSD  201 (635)
Q Consensus       136 ~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~-~~---~~~~~--~~--~~~~~l~~~~~  201 (635)
                      ...++|.+.|.++++.+++++|++.|++|++||..+.+....      ...+ ..   .....  ..  .....+++++.
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            456799999999999889999999999999999766542111      1111 11   11111  11  11246778999


Q ss_pred             CCcEEEEECCCCeEEE-----EE-----eCCCCCeEEEEee-------CCEEEEeeCceeEEEecccceeeecccccccc
Q psy18018        202 DNTLKVWSATTGKCLR-----TL-----IGHTGGVWSSQMA-------GNIIISGSTDRTLKGWSNAERILAIGQLIDSC  264 (635)
Q Consensus       202 dg~i~vwd~~~~~~~~-----~~-----~~h~~~v~~~~~~-------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~  264 (635)
                      ||.|++|++.......     ..     ..+...++.+.+.       +.++++++.||++++|++..............
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            9999999975432211     11     1244566777662       46899999999999999754321100000000


Q ss_pred             CccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCC
Q psy18018        265 EPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP  344 (635)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (635)
                      ... ..                                              .             ..............
T Consensus       168 ~~~-~~----------------------------------------------~-------------~~~~~~~~~~~~~~  187 (393)
T d1sq9a_         168 SPT-LE----------------------------------------------L-------------QGTVESPMTPSQFA  187 (393)
T ss_dssp             CCE-EE----------------------------------------------E-------------EEEECCSSSSCCCC
T ss_pred             ccc-ee----------------------------------------------c-------------ccceecccCCCCcE
Confidence            000 00                                              0             00000011222334


Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEee------eCCCcceeEEEEe--CCEEEEEeCCCc---EEEEEccCC
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL------MGHQSLTSGMELR--NNILVSGNADST---VKVWDIVSG  413 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~------~~~~~~v~~l~~~--~~~l~s~~~dg~---i~iwd~~~~  413 (635)
                      .+++++|++ +|++|+.||.|++||+.+++++..+      .+|...|.+++|+  +.+|++++.|+.   +++||++++
T Consensus       188 ~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            567888887 8899999999999999998876544      4688899999986  456777766653   566666554


Q ss_pred             cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018        414 TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~  491 (635)
                      +.......                    ..........+.+|...|++++|+  +++|++++.|++|++||+++++++..
T Consensus       267 ~~~~~l~~--------------------~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         267 ERIGSLSV--------------------PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             CEEEEECB--------------------C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeeeeecc--------------------ccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence            33221110                    001122333456899999999984  67999999999999999999999999


Q ss_pred             ecCCCcccccEEE----EEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        492 LSGRNKHQSAVTC----LQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       492 ~~~~~~~~~~v~~----~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      +.+   |...|..    +++  ++..+++++   ...++.+..+...                       .......+.+
T Consensus       327 l~g---H~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----------------------~~~~~~~~~~  377 (393)
T d1sq9a_         327 LNM---HCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRS-----------------------GMGADLNESL  377 (393)
T ss_dssp             EEC---CGGGCSSGGGCCCBCTTSCBCSSCC---EEEEEEECTTTSB-----------------------STTCTTSCEE
T ss_pred             ECC---cCCcccCCccEEEECCCCCEEEEcc---cceEEECccCcee-----------------------ccccCCCCEE
Confidence            988   7776642    444  566665443   2223322222211                       0111245668


Q ss_pred             EEecCCCeEEEEeC
Q psy18018        566 ITSSDDGTVKLWDV  579 (635)
Q Consensus       566 ~~~~~d~~v~iwd~  579 (635)
                      ++++.|+.|++|.-
T Consensus       378 ~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         378 CCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEETTTEEEEEEE
T ss_pred             EEEEcCCeEEEEeC
Confidence            89999999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.8e-28  Score=228.99  Aligned_cols=273  Identities=13%  Similarity=0.105  Sum_probs=197.2

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCCceE---EeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcc
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR---HTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTK  415 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~---~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~  415 (635)
                      ..+..++|+|++++|++|+.||.|++||+.++...   ....+|..+|.+++|.   +.++++++.|+.+++|++.....
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence            34456678888899999999999999998765432   3334699999999996   34899999999999999876643


Q ss_pred             ee----------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee----eeccC----CccEEEEEecCCEEEEEeCCCc
Q psy18018        416 KL----------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGH----QSLTSGMELRNNILVSGNADST  477 (635)
Q Consensus       416 ~~----------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~----~~~v~~~~~~~~~l~s~~~dg~  477 (635)
                      ..          ......+++..+++++.++.+++||++++....    ....+    ......+...++.+++++.|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          92 FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence            32          333466788999999999999999987543322    22222    2234456667889999999999


Q ss_pred             EEEEECCCCceeEEecCCCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeecccee----cCceeEEecc
Q psy18018        478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI----LNPFYFLIYS  550 (635)
Q Consensus       478 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~  550 (635)
                      |++||+...+..............+.+..+   ++..+++++.||.+.+|+...............    ........|.
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            999999876644433222224444554444   578999999999999999876543322211100    0111122356


Q ss_pred             CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      ..+++++|+|++++||+|+.||.|++||+++++.+.++.    ..+  .+..++|+|+|++|++++.|+.
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~----~~~--~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----KFN--EDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----CCS--SSEEEEEEECSSEEEEEEECTH
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec----CCC--CCEEEEEEeCCCEEEEEEcCCc
Confidence            678999999999999999999999999999999998873    123  3445778889999999888875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-28  Score=234.04  Aligned_cols=271  Identities=14%  Similarity=0.189  Sum_probs=195.2

Q ss_pred             cccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce------EEeeeCCCcceeEEEE------e---CCEEEEEeCCC
Q psy18018        339 KKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL------RHTLMGHQSLTSGMEL------R---NNILVSGNADS  403 (635)
Q Consensus       339 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~------~~~~~~~~~~v~~l~~------~---~~~l~s~~~dg  403 (635)
                      ...|...+.++...++++++++.|+.|++||..+.+.      ......|...+..+..      +   ..++++++.||
T Consensus        10 ~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          10 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             CCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            3567778888888889999999999999999765432      2233344444333322      1   24788999999


Q ss_pred             cEEEEEccCCcceeEEE-------------------EEee-----CCcEEEEEeCCCcEEEEeCCCCc------------
Q psy18018        404 TVKVWDIVSGTKKLMFR-------------------ICLF-----DGVHVVSGSLDTSIRVWEAESGN------------  447 (635)
Q Consensus       404 ~i~iwd~~~~~~~~~~~-------------------~~~~-----~~~~l~~~~~d~~i~~~d~~~~~------------  447 (635)
                      .+++|++..........                   .+.+     .+.++++++.|+.+++|++....            
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            99999976543221111                   1222     35789999999999999975321            


Q ss_pred             ------eeeeeccCCccEEEEEecCC-EEEEEeCCCcEEEEECCCCceeEEecCC---CcccccEEEEEe--cCCEEEEE
Q psy18018        448 ------LRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGR---NKHQSAVTCLQF--NSRFVITS  515 (635)
Q Consensus       448 ------~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~  515 (635)
                            .......+...+.+++++++ ++++|+.|++|++||+.+++++..+...   ..|..+|.+++|  ++++|++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg  249 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA  249 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred             ceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeee
Confidence                  01112234456778888654 9999999999999999999887766542   348889999999  68999999


Q ss_pred             eCCCc---EEEEECCCCceeeeeccceecC--ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeee
Q psy18018        516 SDDGT---VKLWDVKTGEFSTPLMSSFILN--PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVS  590 (635)
Q Consensus       516 ~~d~~---i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  590 (635)
                      +.|++   |++||+++++.+..+.......  ......|...|++++|+||+++|++++.|++|+|||+++++++.++. 
T Consensus       250 s~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-  328 (393)
T d1sq9a_         250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-  328 (393)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             cCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-
Confidence            99874   9999999999888775432222  22334689999999999999999999999999999999999999984 


Q ss_pred             ccCCCCCceEE----EEEeCCCCeEEEE
Q psy18018        591 LDSGGSGGVVW----RIRASETKLVCAV  614 (635)
Q Consensus       591 ~~~~~~~~~i~----~l~~s~d~~~l~~  614 (635)
                          +|.+.|.    .++|+|++..+++
T Consensus       329 ----gH~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         329 ----MHCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             ----CCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             ----CcCCcccCCccEEEECCCCCEEEE
Confidence                5554443    3556666655443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7e-27  Score=221.47  Aligned_cols=296  Identities=11%  Similarity=0.090  Sum_probs=201.8

Q ss_pred             CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCcee---eccCcceEEEEEEc---
Q psy18018         17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVL---KGHDDHVITCLQFS---   90 (635)
Q Consensus        17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l---~~h~~~vi~~~~~s---   90 (635)
                      ..+.+++|.+.| ++|+||    |+|++||+++.|+        .+.|||+.+.+....+   .+|.+.| .|++|+   
T Consensus         3 ~v~~~~~h~d~I-~~l~fs----p~~~~L~s~s~Dg--------~v~iwd~~~~~~~~~~~~~~~h~~~V-~~v~f~~~~   68 (342)
T d1yfqa_           3 IVQIEQAPKDYI-SDIKII----PSKSLLLITSWDG--------SLTVYKFDIQAKNVDLLQSLRYKHPL-LCCNFIDNT   68 (342)
T ss_dssp             EEECSSCCSSCE-EEEEEE----GGGTEEEEEETTS--------EEEEEEEETTTTEEEEEEEEECSSCE-EEEEEEESS
T ss_pred             eEEcCCCCCCCE-EEEEEe----CCCCEEEEEECCC--------eEEEEEccCCCcceEEEEecCCCCCE-EEEEEeCCC
Confidence            346889999998 999999    9999999998654        4457999876654433   3798888 899998   


Q ss_pred             CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceE-EEEe--cCCEEEEEeCCCeEEEE
Q psy18018         91 GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVR-CVQY--DGKLVVSGAYDYMVKIW  167 (635)
Q Consensus        91 ~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~-~l~~--~~~~l~s~~~dg~v~iw  167 (635)
                      +.+|++|+.|+.|++|+...+.                     .......+...+. ...+  +...+++++.|+++++|
T Consensus        69 ~~~l~sg~~d~~v~~w~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          69 DLQIYVGTVQGEILKVDLIGSP---------------------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSS---------------------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred             CCEEEEcccccceeeeeccccc---------------------cccccccccccccccccccccccccccccccccccee
Confidence            5588999999999988877543                     2233333333322 2222  78999999999999999


Q ss_pred             eCCCccceeeccc-------cceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE---EEEeCCCCCeEEEEe---eCC
Q psy18018        168 NPDTEECLHAELQ-------ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL---RTLIGHTGGVWSSQM---AGN  234 (635)
Q Consensus       168 d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~---~~~  234 (635)
                      |+..+........       ...............+++++.|+.|++||+...+..   .....+...+.+..+   ++.
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred             eccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCC
Confidence            9876543322211       111222233455788999999999999999875443   223345555555554   478


Q ss_pred             EEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccc
Q psy18018        235 IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRS  314 (635)
Q Consensus       235 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (635)
                      .+++++.||.+.+|+.............                                                    
T Consensus       208 ~~~~~s~dg~~~v~~~~~~~~~~~~~~~----------------------------------------------------  235 (342)
T d1yfqa_         208 GYACSSIDGRVAVEFFDDQGDDYNSSKR----------------------------------------------------  235 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCTTC----------------------------------------------------
T ss_pred             EEEeecCCCeEEEEEecCCcceeecccc----------------------------------------------------
Confidence            9999999999999987654221100000                                                    


Q ss_pred             eeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEeC
Q psy18018        315 WRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRN  393 (635)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~~  393 (635)
                      .....           ................++|+|++.+|++|+.||.|++||+.+++.+..+.. |...+.++++++
T Consensus       236 ~~~~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~  304 (342)
T d1yfqa_         236 FAFRC-----------HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD  304 (342)
T ss_dssp             EEEEC-----------CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECS
T ss_pred             ceeee-----------eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCC
Confidence            00000           000000111223345688999999999999999999999999999888754 556777777778


Q ss_pred             CEEEEEeCCCcEEEEEc
Q psy18018        394 NILVSGNADSTVKVWDI  410 (635)
Q Consensus       394 ~~l~s~~~dg~i~iwd~  410 (635)
                      +.+++++.|+.+++|..
T Consensus       305 ~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         305 NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEEECTHHHHCSS
T ss_pred             CEEEEEEcCCcEEEeee
Confidence            88888877777666654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.5e-23  Score=204.04  Aligned_cols=337  Identities=10%  Similarity=0.005  Sum_probs=206.4

Q ss_pred             CCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee--c---cccceeEEeeec-c
Q psy18018        120 RDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA--E---LQETEVELSHGY-A  191 (635)
Q Consensus       120 ~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~--~---~~~~~~~~~~~~-~  191 (635)
                      .||+|++||+.+++.+.++..|. .+..++|  ||++|++++.|++|++||+.+++....  .   ..+........+ +
T Consensus        40 ~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp  118 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY  118 (426)
T ss_dssp             TTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC
Confidence            34444444455677788888775 5899999  999999999999999999999875432  2   223334444444 4


Q ss_pred             CCCEEEE-EeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CC-EEEEeeCceeEEEecccceeeeccccccccCcc
Q psy18018        192 LRSRIVS-GSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GN-IIISGSTDRTLKGWSNAERILAIGQLIDSCEPT  267 (635)
Q Consensus       192 ~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  267 (635)
                      ++.++++ +..++.+.+||..+++++..+.+|...+....+.  +. ..+..+.|                         
T Consensus       119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-------------------------  173 (426)
T d1hzua2         119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-------------------------  173 (426)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS-------------------------
T ss_pred             CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCC-------------------------
Confidence            5666654 4588999999999999999888877665444432  22 22223333                         


Q ss_pred             ceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceE
Q psy18018        268 QIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLF  347 (635)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (635)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (426)
T d1hzua2         174 --------------------------------------------------------------------------------  173 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCcEEEEec-CCCeEEEEEccCCceE-EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018        348 GFQFDGVHVVSGS-LDTSIRVWEAESGNLR-HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD  425 (635)
Q Consensus       348 ~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~-~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  425 (635)
                           +..++... ..+.+.+++....... .....+...+..+.++                               |+
T Consensus       174 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~  217 (426)
T d1hzua2         174 -----HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD-------------------------------SS  217 (426)
T ss_dssp             -----SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC-------------------------------TT
T ss_pred             -----CCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC-------------------------------CC
Confidence                 33322222 2344445544433321 1222334444445543                               44


Q ss_pred             CcEEEEEe-CCCcEEEEeCCCCceeeeeccCC----ccEEEEEecCC---EEEEEeCCCcEEEEECCC-------CceeE
Q psy18018        426 GVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQ----SLTSGMELRNN---ILVSGNADSTVKVWDIVS-------GQCLQ  490 (635)
Q Consensus       426 ~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~-------~~~~~  490 (635)
                      +++++++. .+..+.+++..+++.........    .....+...+.   ..++.+.|+.+.+|+...       ++...
T Consensus       218 g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~  297 (426)
T d1hzua2         218 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  297 (426)
T ss_dssp             SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEE
T ss_pred             CcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeE
Confidence            44444443 33456666666666555443211    11122222222   223344567777776543       46777


Q ss_pred             EecCCCcccccEEEEEe--cCCEEEE-------EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVIT-------SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN  561 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~~-------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  561 (635)
                      .+.+   |...+..+++  ++++|++       ++.|++|+|||+++++...++.....  ......+...+.+++||||
T Consensus       298 ~l~g---~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~--~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         298 ELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--WADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             EEEC---SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--HHCCCSSCCCEEEEEECSS
T ss_pred             EEec---CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch--hcccCCCCccEEEEEECCC
Confidence            7877   7777888888  7899984       55688999999999987655432111  0011124567889999999


Q ss_pred             CeEEEEe-----cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEE
Q psy18018        562 SRFVITS-----SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV  614 (635)
Q Consensus       562 ~~~l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~  614 (635)
                      |++++.+     +.++.|+|||.++++....+.     ++.      .++|+|++-+.
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~-----~~~------~~tp~Gk~~~~  419 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK-----DPR------LITPTGKFNVY  419 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC-----CTT------CCSEEEEEEHH
T ss_pred             CCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC-----CCC------ccCCCceEeEe
Confidence            9977432     468899999999999988884     332      44688887543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=4.9e-24  Score=206.55  Aligned_cols=335  Identities=11%  Similarity=-0.058  Sum_probs=223.9

Q ss_pred             CCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcccee--ecc---ccceeEEeeec-cC
Q psy18018        121 DATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLH--AEL---QETEVELSHGY-AL  192 (635)
Q Consensus       121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~---~~~~~~~~~~~-~~  192 (635)
                      +|+|.+||.++++++..+..|. .+..++|  ||+++++++.|++|++||+.+++...  +..   .+........+ ++
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            3344444445677788888774 6899999  99999999999999999998876432  222   23334444444 45


Q ss_pred             CCEE-EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceee
Q psy18018        193 RSRI-VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH  271 (635)
Q Consensus       193 ~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~  271 (635)
                      +.+| +++..++.|++||..+++++..+..|...+....+..                                      
T Consensus       120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~--------------------------------------  161 (432)
T d1qksa2         120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP--------------------------------------  161 (432)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES--------------------------------------
T ss_pred             CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccC--------------------------------------
Confidence            6665 6778899999999999999998877654332222110                                      


Q ss_pred             eeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe
Q psy18018        272 MMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF  351 (635)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  351 (635)
                                                                                           ......+.++|
T Consensus       162 ---------------------------------------------------------------------~~~~~~v~~s~  172 (432)
T d1qksa2         162 ---------------------------------------------------------------------EPRVAAILASH  172 (432)
T ss_dssp             ---------------------------------------------------------------------CCCEEEEEECS
T ss_pred             ---------------------------------------------------------------------CCceeEEEECC
Confidence                                                                                 00111234677


Q ss_pred             cCcEE-EEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEe--CCEEEEEe-CCCcEEEEEccCCcceeEEEE-----
Q psy18018        352 DGVHV-VSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELR--NNILVSGN-ADSTVKVWDIVSGTKKLMFRI-----  421 (635)
Q Consensus       352 ~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-----  421 (635)
                      ++..+ ++...++.|.+|+..+.+...... .+......++++  ++++++++ .++.+.+++..+.+.......     
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~  252 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  252 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccc
Confidence            77665 456667899999998877554333 344567788887  55666555 456788888877655544332     


Q ss_pred             --------EeeCCcEEEEEe--CCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        422 --------CLFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       422 --------~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                              ..+.+..+....  .++.+.+|+.....    ...|...+....+  ++..+++++.+...++|+.......
T Consensus       253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~  328 (432)
T d1qksa2         253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE  328 (432)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             ccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC
Confidence                    222333333333  37788888766543    2345556666555  4678899999999999986543321


Q ss_pred             EEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018        490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS  569 (635)
Q Consensus       490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  569 (635)
                      ..      ....+. + +|++.+++++.|+.+++|++.++..+.              .|...+.+++|||||++++.+.
T Consensus       329 ~~------~~~sv~-v-pDg~~la~~s~d~~~k~w~~~~~~~l~--------------~~~~~v~~~~fS~DG~~v~~S~  386 (432)
T d1qksa2         329 AE------ISGSVA-V-FDIKAMTGDGSDPEFKTLPIAEWAGIT--------------EGQPRVVQGEFNKDGTEVWFSV  386 (432)
T ss_dssp             HH------HHTCEE-E-EEGGGCCCSSSCCCEEEECHHHHHTCC--------------SSCCEEEEEEECTTSSEEEEEE
T ss_pred             CC------eeeEEE-E-EechhhcccccCCceEecccccccccC--------------CCCCcEEEeEECCCCCEEEEEE
Confidence            11      122232 2 699999999999999999986553221              1456788899999999886553


Q ss_pred             -----CCCeEEEEeCCCCceEEeee
Q psy18018        570 -----DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       570 -----~d~~v~iwd~~~~~~~~~~~  589 (635)
                           .+|.|+|||.+++++...+.
T Consensus       387 ~~~~~~~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         387 WNGKDQESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             ECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ecCCCCCCcEEEEECCCceEEeEec
Confidence                 57899999999999988774

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.3e-24  Score=205.76  Aligned_cols=318  Identities=15%  Similarity=0.066  Sum_probs=202.9

Q ss_pred             CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCC--eEEE
Q psy18018         91 GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDY--MVKI  166 (635)
Q Consensus        91 ~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg--~v~i  166 (635)
                      |+++|+++ +|.|.+||++                     +++.++ + +|...|.+++|  ||++|++++.+.  .|++
T Consensus        15 G~~~a~~~-~g~v~v~d~~---------------------~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVS---------------------GTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTT---------------------SSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEE-CCeEEEEECC---------------------CCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            77777765 3456666554                     444433 3 79999999999  999998877653  7999


Q ss_pred             EeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCcee
Q psy18018        167 WNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRT  244 (635)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  244 (635)
                      ||+.+++......+...+....+.+++.+|++++.++.+++|++.+++....+..|...+.+++|+  +++|+.+..++.
T Consensus        71 ~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~  150 (360)
T d1k32a3          71 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  150 (360)
T ss_dssp             EETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             EECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccc
Confidence            999998876655555666666677788999999999999999999999998888888888777763  555544332211


Q ss_pred             EEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcc
Q psy18018        245 LKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLL  324 (635)
Q Consensus       245 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (635)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (360)
T d1k32a3         151 --------------------------------------------------------------------------------  150 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC
Q psy18018        325 WREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD  402 (635)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d  402 (635)
                                                    ..+.+..++.+++|+..+++... +..+...+..++++  ++.|++++.+
T Consensus       151 ------------------------------~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~  199 (360)
T d1k32a3         151 ------------------------------GETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYR  199 (360)
T ss_dssp             ------------------------------STTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             ------------------------------cceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCC
Confidence                                          11223445678999998776544 34455566666665  4455666666


Q ss_pred             CcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE--ecCCEEEEEeCCC----
Q psy18018        403 STVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME--LRNNILVSGNADS----  476 (635)
Q Consensus       403 g~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg----  476 (635)
                      +.+.+|+.......                          .........+..|...+..+.  .++..++++..+.    
T Consensus       200 ~~~~~~d~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  253 (360)
T d1k32a3         200 SLDPSPDRVVLNFS--------------------------FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY  253 (360)
T ss_dssp             CCCCEECSSSSCEE--------------------------CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             CceEccccccccee--------------------------eccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence            55555554322110                          000111111222222222111  2222333332221    


Q ss_pred             -cEEEEECCCCceeEEecCCCcccccEEEEEe-----cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018        477 -TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS  550 (635)
Q Consensus       477 -~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  550 (635)
                       .+..++...++.. .+..   +...+..+.+     +..++++++.++.+++||+.+++...               |.
T Consensus       254 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---------------~~  314 (360)
T d1k32a3         254 KRSSPINVDPGDYR-MIIP---LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---------------VK  314 (360)
T ss_dssp             GGCEECSCCCBCEE-EEEE---CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---------------EE
T ss_pred             cceeecccCcCcee-Eeee---cCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---------------ec
Confidence             2333344444332 2222   3333444444     13467888899999999999876321               34


Q ss_pred             CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018        551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL  588 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  588 (635)
                      ..|.+++|||||++|++++.||.|++||+++++...++
T Consensus       315 ~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            56889999999999999999999999999999887776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=8.9e-24  Score=201.60  Aligned_cols=183  Identities=13%  Similarity=0.031  Sum_probs=139.7

Q ss_pred             EEEecCCCCC-CCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCC--cEEE
Q psy18018         31 CLQFSGKSFP-CESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDN--TLKV  105 (635)
Q Consensus        31 ~~~~s~~~~~-~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~--~v~v  105 (635)
                      +-.||    | ||+++|+++.         ..+++||...++..+.  +|.+.+ .+++|+  |++|++++.+.  .|++
T Consensus         7 ~~~fS----P~dG~~~a~~~~---------g~v~v~d~~~~~~~~~--~~~~~v-~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           7 AEDFS----PLDGDLIAFVSR---------GQAFIQDVSGTYVLKV--PEPLRI-RYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEEEE----ECGGGCEEEEET---------TEEEEECTTSSBEEEC--SCCSCE-EEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             ccccc----CCCCCEEEEEEC---------CeEEEEECCCCcEEEc--cCCCCE-EEEEECCCCCEEEEEEcCCCCEEEE
Confidence            35689    8 9999999764         2455799988776553  688887 899999  88888877553  5677


Q ss_pred             EECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce
Q psy18018        106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE  183 (635)
Q Consensus       106 Wd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  183 (635)
                      ||.++++                      ...+..|...|.+++|  |+++|++++.++.+++|++.+++.......+..
T Consensus        71 ~d~~~~~----------------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (360)
T d1k32a3          71 YDYRTGK----------------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  128 (360)
T ss_dssp             EETTTCC----------------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             EECCCCc----------------------EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc
Confidence            7766433                      3456789999999999  999999999999999999999987776665544


Q ss_pred             eEEee-eccCCCEEEEE----------eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEEecc
Q psy18018        184 VELSH-GYALRSRIVSG----------SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSN  250 (635)
Q Consensus       184 ~~~~~-~~~~~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~w~~  250 (635)
                      ..... ..+++.+|+.+          ..++.+++||+.+++... +..|...+..+.+  +++.|++++.|+.+++|+.
T Consensus       129 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             cccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence            44333 34556666644          345579999998877654 4456777777777  5889999999999999986


Q ss_pred             cc
Q psy18018        251 AE  252 (635)
Q Consensus       251 ~~  252 (635)
                      ..
T Consensus       208 ~~  209 (360)
T d1k32a3         208 VV  209 (360)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.2e-22  Score=197.53  Aligned_cols=326  Identities=8%  Similarity=0.009  Sum_probs=215.3

Q ss_pred             EEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCCCeEEEEe
Q psy18018        154 LVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI--GHTGGVWSSQM  231 (635)
Q Consensus       154 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~  231 (635)
                      ++++.+.||+|++||+.+++.+..+..+..+....+.+++.++++++.|+.+++||+.+++......  ...+ ...+. 
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~-~~~~~-  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE-ARSVE-  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE-EEEEE-
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC-CcceE-
Confidence            5688889999999999999999998887777767777888999999999999999999887554332  1110 01100 


Q ss_pred             eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccc
Q psy18018        232 AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT  311 (635)
Q Consensus       232 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (635)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (426)
T d1hzua2         112 --------------------------------------------------------------------------------  111 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEe-cCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                       ...+|+|||++++++ ..++.+.+||..++..+..+..|...+....
T Consensus       112 ---------------------------------~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  158 (426)
T d1hzua2         112 ---------------------------------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  158 (426)
T ss_dssp             ---------------------------------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             ---------------------------------EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcccee
Confidence                                             011277899987554 4789999999999999998888887766555


Q ss_pred             Ee--CC-EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce-eeeeccCCccEEEEEe--
Q psy18018        391 LR--NN-ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMEL--  464 (635)
Q Consensus       391 ~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~--  464 (635)
                      +.  +. ..+..+.|+...++...                      ..+.+.+++..+... .....++...+..+.+  
T Consensus       159 ~~~~~~~~~i~~s~d~~~~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         159 YHPEPRVAAIIASHEHPEFIVNVK----------------------ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEET----------------------TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             ecCCCceeEEEECCCCCEEEEecC----------------------CCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence            54  32 34455555554444322                      234555555555432 2233456666777777  


Q ss_pred             cCCEEEEE-eCCCcEEEEECCCCceeEEecCCC-cccccEEEEEecCC---EEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018        465 RNNILVSG-NADSTVKVWDIVSGQCLQTLSGRN-KHQSAVTCLQFNSR---FVITSSDDGTVKLWDVKTGEFSTPLMSSF  539 (635)
Q Consensus       465 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  539 (635)
                      ++++++++ ..+..+.+++..+++.+....... .+......+...+.   ..+..+.|+.+.+|+..........    
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~----  292 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA----  292 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB----
T ss_pred             CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc----
Confidence            45555555 466779999999999887765421 12222222223222   2334456888989887654311100    


Q ss_pred             ecCceeEEeccCceecccccCCCeEEEE-------ecCCCeEEEEeCCCCceEEeeeec----cCCCCCceEEEEEeCCC
Q psy18018        540 ILNPFYFLIYSQPLLCPHLQFNSRFVIT-------SSDDGTVKLWDVKTGEFIRNLVSL----DSGGSGGVVWRIRASET  608 (635)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~i~~l~~s~d  608 (635)
                      .........|...+..++|+||+++|++       +..|++|+|||+++++...++...    ....+...+.+++||||
T Consensus       293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             TSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             ceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence            0011123347888999999999999994       556889999999999876655322    11345677999999999


Q ss_pred             CeEEEE-----ccCCCe
Q psy18018        609 KLVCAV-----GSRNGT  620 (635)
Q Consensus       609 ~~~l~~-----~~~dg~  620 (635)
                      |+++++     .+.+|.
T Consensus       373 Gk~i~vs~~~~~~~~~~  389 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSA  389 (426)
T ss_dssp             SSEEEEEECCCTTSCCE
T ss_pred             CCEEEEEEecCCCCCCe
Confidence            996643     245665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6.2e-23  Score=198.74  Aligned_cols=311  Identities=8%  Similarity=-0.073  Sum_probs=213.0

Q ss_pred             EEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE--EEEe---CCCCCeEE
Q psy18018        154 LVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL--RTLI---GHTGGVWS  228 (635)
Q Consensus       154 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~---~h~~~v~~  228 (635)
                      ++++.+.||+|.+||..+++.+..+..+..+....+.++++++++++.|+.+++||+.+++..  ..++   +|.+.+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            458999999999999999999999888877777778888999999999999999999876533  3322   11111111


Q ss_pred             EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018        229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA  308 (635)
Q Consensus       229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (635)
                      .                                                                               
T Consensus       114 ~-------------------------------------------------------------------------------  114 (432)
T d1qksa2         114 K-------------------------------------------------------------------------------  114 (432)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCC----
Q psy18018        309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQ----  383 (635)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~----  383 (635)
                                                             .|+|||++| +++..++.|++||..+++.+..+..|.    
T Consensus       115 ---------------------------------------~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~  155 (432)
T d1qksa2         115 ---------------------------------------MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD  155 (432)
T ss_dssp             ---------------------------------------STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT
T ss_pred             ---------------------------------------ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc
Confidence                                                   156677765 456667777777777777766655432    


Q ss_pred             -------cceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcceeEE----------EEEeeCCcEEEEEeC-CCcEEEEe
Q psy18018        384 -------SLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKLMF----------RICLFDGVHVVSGSL-DTSIRVWE  442 (635)
Q Consensus       384 -------~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~l~~~~~-d~~i~~~d  442 (635)
                             ....++.++  +. ++++...++.+.+|+..+.+.....          ..++|+|+++++++. ++.+.++|
T Consensus       156 ~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d  235 (432)
T d1qksa2         156 EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVID  235 (432)
T ss_dssp             TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEee
Confidence                   234445554  33 4556667788888887766543322          248899998877765 55788999


Q ss_pred             CCCCceeeeecc-----CCccEEEEEec-CC-EEEEE-eCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEE
Q psy18018        443 AESGNLRHTLMG-----HQSLTSGMELR-NN-ILVSG-NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV  512 (635)
Q Consensus       443 ~~~~~~~~~~~~-----~~~~v~~~~~~-~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  512 (635)
                      ..+++....+..     |......+... .. ...+. ..++.+.+|+.....    ...   +...+....+  ++..+
T Consensus       236 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~---~~~~v~~~~~~~~g~~~  308 (432)
T d1qksa2         236 TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPD---NAWKILDSFPALGGGSL  308 (432)
T ss_dssp             TTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTT---TBTSEEEEEECSCSCCC
T ss_pred             cccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccc---cccEEEEEEEcCCCCeE
Confidence            998887766543     23333333332 22 33333 247889999866542    122   5556666666  57889


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc
Q psy18018        513 ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD  592 (635)
Q Consensus       513 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  592 (635)
                      ++++.+...++|+..+...                 |.....++++ ||++.|++++.|+.+++||+.++..+       
T Consensus       309 ~~~s~p~~~~lw~~~~~~~-----------------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l-------  363 (432)
T d1qksa2         309 FIKTHPNSQYLYVDATLNP-----------------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI-------  363 (432)
T ss_dssp             CEECCTTCSEEEEECTTCS-----------------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC-------
T ss_pred             EEEecCCccceeecccCCC-----------------CCCeeeEEEE-EechhhcccccCCceEeccccccccc-------
Confidence            9999999999998765431                 1222334444 89999999999999999998665322       


Q ss_pred             CCCCCceEEEEEeCCCCeEEEEc
Q psy18018        593 SGGSGGVVWRIRASETKLVCAVG  615 (635)
Q Consensus       593 ~~~~~~~i~~l~~s~d~~~l~~~  615 (635)
                       ..+...+.+++|||||++|++.
T Consensus       364 -~~~~~~v~~~~fS~DG~~v~~S  385 (432)
T d1qksa2         364 -TEGQPRVVQGEFNKDGTEVWFS  385 (432)
T ss_dssp             -CSSCCEEEEEEECTTSSEEEEE
T ss_pred             -CCCCCcEEEeEECCCCCEEEEE
Confidence             2456789999999999877544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=3.1e-19  Score=164.95  Aligned_cols=225  Identities=17%  Similarity=0.178  Sum_probs=166.6

Q ss_pred             EEEEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcceeEE---
Q psy18018        347 FGFQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKLMF---  419 (635)
Q Consensus       347 ~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~---  419 (635)
                      ++++|||+++ +++..++.|++||+.+++.+..+..+.. ...++++  +. .++++..++.+.+|+..+++.....   
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccc
Confidence            5588898877 4666788999999999998888887764 4677776  33 5556667788999998877654433   


Q ss_pred             -----EEEeeCCcEEEEE-eCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCceeE
Q psy18018        420 -----RICLFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNA-DSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       420 -----~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-dg~i~iwd~~~~~~~~  490 (635)
                           ..+++++..++.. ..++.+.+|+..+++....+..+.. ...+.+  ++..+++++. ++.+.+|+....+...
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC-ceEEEeeccccceeeecccccccccccccceeeee
Confidence                 3477888887654 5678899999999988888776544 444555  4556666554 4677788888777777


Q ss_pred             EecCCCcccccEEEEEe--cCCEEEEEe---CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSRFVITSS---DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      .+..    ...+..+++  +++.++.++   .++.|++||+.+++....+..            ...+.+++|+|||++|
T Consensus       195 ~~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------------~~~~~~va~spdg~~l  258 (301)
T d1l0qa2         195 TVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV------------GPDPAGIAVTPDGKKV  258 (301)
T ss_dssp             EEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC------------CSSEEEEEECTTSSEE
T ss_pred             cccc----cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC------------CCCEEEEEEeCCCCEE
Confidence            6653    334555666  577766554   346899999999987665542            4567899999999976


Q ss_pred             -EEecCCCeEEEEeCCCCceEEeee
Q psy18018        566 -ITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       566 -~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                       ++++.|+.|++||+++++.+.++.
T Consensus       259 ~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCeEEEEEe
Confidence             577789999999999999998884

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.1e-20  Score=171.63  Aligned_cols=248  Identities=10%  Similarity=0.011  Sum_probs=171.7

Q ss_pred             CCCceEEEEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCCc-----ceeEEEEe--CCEEEEEe------------C
Q psy18018        342 HVPDLFGFQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQS-----LTSGMELR--NNILVSGN------------A  401 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~-----~v~~l~~~--~~~l~s~~------------~  401 (635)
                      ..+..++++|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++++  ++.++++.            .
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            334567899999987 5667899999999999999888876543     34456665  55666654            4


Q ss_pred             CCcEEEEEccCCcceeEEE--------EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE-EEEEe--------
Q psy18018        402 DSTVKVWDIVSGTKKLMFR--------ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-SGMEL--------  464 (635)
Q Consensus       402 dg~i~iwd~~~~~~~~~~~--------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~--------  464 (635)
                      +..+.+||..+++......        .++++|+++++++.  .+.+||..+++....+..+.... ....+        
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence            6788899988876554443        47889999998864  47789999988877765432210 00000        


Q ss_pred             ----------------cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018        465 ----------------RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDV  526 (635)
Q Consensus       465 ----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~  526 (635)
                                      .......+..++.+.+|+..++........  .+...+..+.+  ++.+++.+  ++.+++||+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~  267 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR--IMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE--ECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec--CCCcceEEEEecccceEEEEc--cccEEEEEC
Confidence                            011111223345689999988876554322  14555666666  46666555  589999999


Q ss_pred             CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                      ++++.+..+.            +...+.+++|+|||++|++++.|+.|+|||+++++.+.++.... .+.....+-.-|+
T Consensus       268 ~~~~~~~~~~------------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g-~~~~~~~~~~~~~  334 (337)
T d1pbyb_         268 EKNASIKRVP------------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG-NASMSLASVRLFT  334 (337)
T ss_dssp             TTTEEEEEEE------------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG-GCCCBTCCCEEEE
T ss_pred             CCCcEEEEEc------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC-CCccceeeeeEEc
Confidence            9998777654            35678899999999999999999999999999999999885422 2333334444455


Q ss_pred             CC
Q psy18018        607 ET  608 (635)
Q Consensus       607 ~d  608 (635)
                      +|
T Consensus       335 ~~  336 (337)
T d1pbyb_         335 RD  336 (337)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=4.9e-18  Score=156.76  Aligned_cols=249  Identities=17%  Similarity=0.138  Sum_probs=184.6

Q ss_pred             EEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEE-EEEeCCCcEEEEEccCCcceeEEE--------EEee
Q psy18018        356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL-VSGNADSTVKVWDIVSGTKKLMFR--------ICLF  424 (635)
Q Consensus       356 l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~  424 (635)
                      +++++.++.|.+||+.+++.+..+.... ....++++  +++| ++++.++.|++||+.+++......        .+++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            3567788999999999999998887653 46788887  4565 567788999999999887655443        3667


Q ss_pred             CCcEEEE-EeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEE-EEEeCCCcEEEEECCCCceeEEecCCCcccc
Q psy18018        425 DGVHVVS-GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNIL-VSGNADSTVKVWDIVSGQCLQTLSGRNKHQS  500 (635)
Q Consensus       425 ~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  500 (635)
                      ++..+++ +..++.+.+|+..+++....+..+.. ..++.+  +++.+ +++..++.+.+|+..+.+....+..    ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  158 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----GR  158 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----CS
T ss_pred             ccccccccccccceeeecccccceeeeecccccc-ceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc----CC
Confidence            8876555 55677899999999988888876654 344444  56654 5666788899999999998888774    34


Q ss_pred             cEEEEEe--cCCEEEEEeCC-CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec---CCCeE
Q psy18018        501 AVTCLQF--NSRFVITSSDD-GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS---DDGTV  574 (635)
Q Consensus       501 ~v~~~~~--~~~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~v  574 (635)
                      .+..+.+  +++.+++++.+ +.+.+|+....+.......            ......++|+++++.+++++   .++.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~v~~~~~~~~~v  226 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV------------EAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------SSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeecccc------------cCCcceeeccccccccccccccceeeee
Confidence            4566666  56777666654 6677888777665544432            34566788999999887654   34689


Q ss_pred             EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEE-EEccCCCeeEeEEEEEeeec
Q psy18018        575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVC-AVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l-~~~~~dg~~~~~l~~~d~~~  632 (635)
                      ++||+.+++.+..+.      ....+.+++|+|||++| ++++.++.    |.+||++.
T Consensus       227 ~v~D~~t~~~~~~~~------~~~~~~~va~spdg~~l~va~~~~~~----i~v~D~~t  275 (301)
T d1l0qa2         227 SMIDTGTNKITARIP------VGPDPAGIAVTPDGKKVYVALSFCNT----VSVIDTAT  275 (301)
T ss_dssp             EEEETTTTEEEEEEE------CCSSEEEEEECTTSSEEEEEETTTTE----EEEEETTT
T ss_pred             eeeecCCCeEEEEEc------CCCCEEEEEEeCCCCEEEEEECCCCe----EEEEECCC
Confidence            999999999988773      23457899999999976 57777887    66677653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=1.1e-16  Score=152.65  Aligned_cols=342  Identities=8%  Similarity=-0.075  Sum_probs=208.8

Q ss_pred             ccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEee
Q psy18018         21 LKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGS   98 (635)
Q Consensus        21 l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~   98 (635)
                      ..+|..++ ..+|+|    |||+.++.......   .....+.+||..+++.+.++.++...   .++|+  |++|++++
T Consensus        16 ~~~~~~p~-~~~a~s----pdg~~~~~~~~~~~---~~~~~v~v~D~~tg~~~~~~~~~~~~---~~a~SpDG~~l~va~   84 (373)
T d2madh_          16 AGAADGPT-NDEAPG----ADGRRSYINLPAHH---SAIIQQWVLDAGSGSILGHVNGGFLP---NPVAAHSGSEFALAS   84 (373)
T ss_pred             cccCCCCc-cccccC----CCCCEEEEEccccc---CCCceEEEEECCCCCEEEEEeCCCCc---cEEEcCCCCEEEEEe
Confidence            34678888 899999    99999877544321   22445677999999999999887653   58888  99999887


Q ss_pred             CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeec
Q psy18018         99 DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAE  178 (635)
Q Consensus        99 ~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  178 (635)
                      .+..-           ...+..++.|.+||..+++++..+..+......+..+...++....+..+.+|..         
T Consensus        85 ~~~~~-----------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---------  144 (373)
T d2madh_          85 TSFSR-----------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF---------  144 (373)
T ss_pred             ecCCc-----------ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE---------
Confidence            65432           3345567788899999999988888887777666554444444333333333321         


Q ss_pred             cccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecc
Q psy18018        179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIG  258 (635)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~  258 (635)
                                           ..++.+.+|+....+.......    .                                
T Consensus       145 ---------------------~~~~~~~~~~~~~~~~~~~~~~----~--------------------------------  167 (373)
T d2madh_         145 ---------------------AAGPAVGLVVQGGSSDDQLLSS----P--------------------------------  167 (373)
T ss_pred             ---------------------cCCCceEEeeccCCeEEEEecc----c--------------------------------
Confidence                                 2234566666655544333221    1                                


Q ss_pred             ccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccc
Q psy18018        259 QLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRN  338 (635)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (635)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (373)
T d2madh_         168 --------------------------------------------------------------------------------  167 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCceEEEEecCcE-EEEecCCCeEEEEEccCCceEEeeeCCCcc------eeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018        339 KKTHVPDLFGFQFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSL------TSGMELRNNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       339 ~~~~~~~~~~~s~~~~~-l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~------v~~l~~~~~~l~s~~~dg~i~iwd~~  411 (635)
                            ....++|+++. +++.+.|+.+.+|+...+........+...      .....+.                   
T Consensus       168 ------~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  222 (373)
T d2madh_         168 ------TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN-------------------  222 (373)
T ss_pred             ------eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC-------------------
Confidence                  11235666554 356677788888887776665544332211      1111111                   


Q ss_pred             CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee--eeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018        412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH--TLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~  487 (635)
                                  + +..++..+.++.+.+|+..++....  ....+........+  .+...+..+.|+.          
T Consensus       223 ------------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------  279 (373)
T d2madh_         223 ------------K-SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD----------  279 (373)
T ss_pred             ------------C-CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC----------
Confidence                        1 1223344455666666665543321  11122222211111  1112222222221          


Q ss_pred             eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe--EE
Q psy18018        488 CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR--FV  565 (635)
Q Consensus       488 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l  565 (635)
                                   .+......+..+++...++.+.+||..+++.+..+.            +...+..++|+|||+  ++
T Consensus       280 -------------~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~------------~~~~~~~~a~spDG~~~l~  334 (373)
T d2madh_         280 -------------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------------LGHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             -------------eEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec------------CCCCeeEEEECCCCCEEEE
Confidence                         111122246677788888999999999998776654            356788999999998  45


Q ss_pred             EEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        566 ITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       566 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      ++++.|++|+|||+.+++.++.+     ..+....+.|++.++
T Consensus       335 vt~~~d~~v~v~D~~tg~~~~~~-----~~~g~~P~~l~~~~~  372 (373)
T d2madh_         335 ALSAGTEVLHIYDAGAGDQDQST-----VELGSGPQVLSVMNE  372 (373)
T ss_pred             EEeCCCCeEEEEECCCCCEEEEE-----CCCCCCCcEEEEecC
Confidence            68899999999999999999999     455566667776554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.9e-18  Score=160.29  Aligned_cols=254  Identities=11%  Similarity=0.078  Sum_probs=185.3

Q ss_pred             cEEEEecCCCeEEEEEccCCceEEeeeCCC--cceeEEEEe--CCEE-EEEeCCCcEEEEEccCCcceeEEE--------
Q psy18018        354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQ--SLTSGMELR--NNIL-VSGNADSTVKVWDIVSGTKKLMFR--------  420 (635)
Q Consensus       354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~--------  420 (635)
                      +++++++.|+.|.+||+.+++.+..+..+.  ..+.+++++  ++++ ++++.++.|.+||+.+++......        
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            579999999999999999999998887643  456788887  5565 566789999999999987765543        


Q ss_pred             ------EEeeCCcEEEEEe------------CCCcEEEEeCCCCceeeeeccCCccEEEEE--ecCCEEEEEeCCCcEEE
Q psy18018        421 ------ICLFDGVHVVSGS------------LDTSIRVWEAESGNLRHTLMGHQSLTSGME--LRNNILVSGNADSTVKV  480 (635)
Q Consensus       421 ------~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~i  480 (635)
                            .++|++++++++.            .+..+.+||..+++....+..+. .+.++.  .+++++++++.  .+.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-SCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC-CceEEEEcCCCCEEEEEcC--Ccce
Confidence                  3788999988876            46789999999999888877543 344444  46778888764  4788


Q ss_pred             EECCCCceeEEecCCCccccc------------------EEEE--E--ecCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018        481 WDIVSGQCLQTLSGRNKHQSA------------------VTCL--Q--FNSRFVITSSDDGTVKLWDVKTGEFSTPLMSS  538 (635)
Q Consensus       481 wd~~~~~~~~~~~~~~~~~~~------------------v~~~--~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  538 (635)
                      ||..+++....+.........                  ....  .  ++......+..++.+.+|+..++.......  
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  236 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV--  236 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE--
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe--
Confidence            999998887776542111000                  0000  0  011222223345568899998887544322  


Q ss_pred             eecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018        539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN  618 (635)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d  618 (635)
                              ..+...+..++++|++.+++.+  ++.+++||+++++.+..+.      +...+.+++|+|||++|++++.+
T Consensus       237 --------~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         237 --------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             --------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSCEEEEESBS
T ss_pred             --------cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc------CCCCEEEEEECCCCCEEEEEeCC
Confidence                    2356677888999999998876  5889999999999998883      34568899999999999999999


Q ss_pred             CeeEeEEEEEeeec
Q psy18018        619 GTEETKLLVLDFDV  632 (635)
Q Consensus       619 g~~~~~l~~~d~~~  632 (635)
                      +.    |.+||.+.
T Consensus       301 ~~----i~v~D~~t  310 (337)
T d1pbyb_         301 GD----LAAYDAET  310 (337)
T ss_dssp             SE----EEEEETTT
T ss_pred             Cc----EEEEECCC
Confidence            98    66677653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=8.8e-18  Score=158.47  Aligned_cols=225  Identities=9%  Similarity=-0.004  Sum_probs=140.1

Q ss_pred             EEEEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCCc------ceeEEEEe--CCEEEEEe------------CCCcE
Q psy18018        347 FGFQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQS------LTSGMELR--NNILVSGN------------ADSTV  405 (635)
Q Consensus       347 ~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~------~v~~l~~~--~~~l~s~~------------~dg~i  405 (635)
                      ++|+|||+++ +++..++.|.+||+.+++.+..+.....      .+..++++  ++.++++.            .++.+
T Consensus        45 l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i  124 (346)
T d1jmxb_          45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL  124 (346)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             EEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceE
Confidence            3466666655 3344566677777766666555443221      23345554  44454443            46778


Q ss_pred             EEEEccCCcceeEEEE-----------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE-EEEEe---------
Q psy18018        406 KVWDIVSGTKKLMFRI-----------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-SGMEL---------  464 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~---------  464 (635)
                      .+|+..+++.......           .++++..++ .  ++.+.+|+..+++....+..+.... ..+.+         
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (346)
T d1jmxb_         125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ  201 (346)
T ss_dssp             EEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred             EEEecccceeeeEEEeeeccCceEEEEecCCCEEEE-e--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEe
Confidence            8888877654432221           223333333 2  2457788888888777665432110 00000         


Q ss_pred             -----------------cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018        465 -----------------RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD  525 (635)
Q Consensus       465 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd  525 (635)
                                       ....++++..+..+.+||..++........  .+...+..+.+  ++.+++... ++.+++||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d  278 (346)
T d1jmxb_         202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--DLTELYFTGLRSPKDPNQIYGV-LNRLAKYD  278 (346)
T ss_dssp             CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE--ECSSCEEEEEECSSCTTEEEEE-ESEEEEEE
T ss_pred             cCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee--cccceeEEEEEeCCCCEEEEec-CCeEEEEE
Confidence                             122344455667789999988776554332  14555666666  466666665 45799999


Q ss_pred             CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                      ..+++.+..+..            ...+.+++|||||++|++++.|+.|+|||+++++.+.++.
T Consensus       279 ~~~~~~~~~~~~------------~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         279 LKQRKLIKAANL------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             TTTTEEEEEEEC------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCcEEEEEcC------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            999987765542            4578899999999999999999999999999999999885

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=2.5e-18  Score=162.27  Aligned_cols=261  Identities=13%  Similarity=0.081  Sum_probs=183.7

Q ss_pred             EEEecCcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEe--CCEE-EEEeCCCcEEEEEccCCcceeEEE---
Q psy18018        348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR--NNIL-VSGNADSTVKVWDIVSGTKKLMFR---  420 (635)
Q Consensus       348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~---  420 (635)
                      +++++++++++++.++.|.+||+.+++.+.+++. +...+.+++++  ++++ +++..++.|.+||+.+++......   
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            4788999999999999999999999999998874 55677899997  4555 566688999999999886654433   


Q ss_pred             ------------EEeeCCcEEEEEe------------CCCcEEEEeCCCCceeeeeccCC--ccEEEEEe--cCCEEEEE
Q psy18018        421 ------------ICLFDGVHVVSGS------------LDTSIRVWEAESGNLRHTLMGHQ--SLTSGMEL--RNNILVSG  472 (635)
Q Consensus       421 ------------~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~s~  472 (635)
                                  .++|||++++++.            .+..+.+|+..+++....+..+.  ..+..+..  ++.++++ 
T Consensus        83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-  161 (346)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-
T ss_pred             cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe-
Confidence                        3788999988775            46788999988877655544322  22222333  3334433 


Q ss_pred             eCCCcEEEEECCCCceeEEecCCCcc------------------cccEEEE----Ee--cCCEEEEEeCCCcEEEEECCC
Q psy18018        473 NADSTVKVWDIVSGQCLQTLSGRNKH------------------QSAVTCL----QF--NSRFVITSSDDGTVKLWDVKT  528 (635)
Q Consensus       473 ~~dg~i~iwd~~~~~~~~~~~~~~~~------------------~~~v~~~----~~--~~~~l~~~~~d~~i~vwd~~~  528 (635)
                      +  +.+.+|++.+++.+..+......                  ...+...    .+  ....++++..++.+.+|++.+
T Consensus       162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
T d1jmxb_         162 G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  239 (346)
T ss_dssp             S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             C--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence            2  45899999988888776532100                  0011100    00  133445556667788899888


Q ss_pred             CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                      +........          .+...+..+.+++++.+++... ++.|.+||+.+++.+..+.      +...+.+++|+||
T Consensus       240 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~------~~~~~~~va~s~D  302 (346)
T d1jmxb_         240 GKTHTQEFA----------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN------LDHTYYCVAFDKK  302 (346)
T ss_dssp             CCEEEEEEE----------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE------CSSCCCEEEECSS
T ss_pred             CceEEEEee----------cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc------CCCCEEEEEEcCC
Confidence            775544322          3566788888999988888766 4579999999999988773      3346889999999


Q ss_pred             CeEEEEccCCCeeEeEEEEEeeec
Q psy18018        609 KLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       609 ~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      |++|++++.|+.    |.+||.+.
T Consensus       303 G~~l~v~~~d~~----v~v~D~~t  322 (346)
T d1jmxb_         303 GDKLYLGGTFND----LAVFNPDT  322 (346)
T ss_dssp             SSCEEEESBSSE----EEEEETTT
T ss_pred             CCEEEEEeCCCc----EEEEECcc
Confidence            999999999997    66667653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=9.7e-16  Score=144.80  Aligned_cols=304  Identities=12%  Similarity=0.055  Sum_probs=185.1

Q ss_pred             eccCCCEEEEEe-----CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEe----------eCceeEEEecccce
Q psy18018        189 GYALRSRIVSGS-----DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISG----------STDRTLKGWSNAER  253 (635)
Q Consensus       189 ~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~----------~~dg~i~~w~~~~~  253 (635)
                      ..+++.++++..     .++.|.+||..+++.+.++..+..+-.++..++++|++.          +.|+.|++||..+.
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~   88 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL   88 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence            346677776653     356799999999999999887766633333367777654          45889999998875


Q ss_pred             eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018        254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA  333 (635)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (635)
                      .........                                                                       
T Consensus        89 ~~~~~~~~~-----------------------------------------------------------------------   97 (355)
T d2bbkh_          89 LPTADIELP-----------------------------------------------------------------------   97 (355)
T ss_dssp             CEEEEEEET-----------------------------------------------------------------------
T ss_pred             CEEEEEecC-----------------------------------------------------------------------
Confidence            432110000                                                                       


Q ss_pred             hhccccccCCCceEEEEecCcEEEEec--CCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018        334 TLHRNKKTHVPDLFGFQFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV  411 (635)
Q Consensus       334 ~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~  411 (635)
                      .............++|++++++++++.  .+..+.+|+..+++.+..+..+... ......+...++.+.|+....+...
T Consensus        98 ~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~~~~v~~~  176 (355)
T d2bbkh_          98 DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFG  176 (355)
T ss_dssp             TCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc-eEeecCCcceEEEcCCCCEEEEEec
Confidence            000011112234567999999887764  4578999999999888877654432 1222234444555555554443332


Q ss_pred             CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEE--EEEecCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS--GMELRNNILVSGNADSTVKVWDIVSGQCL  489 (635)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  489 (635)
                                            .++.+.+++.......     +...+.  .....+..++.++.++.+++|++..++..
T Consensus       177 ----------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         177 ----------------------TEGTPEITHTEVFHPE-----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             ----------------------SSSCCEEEECCCCSCT-----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             ----------------------CCCeEEEEecccccce-----ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence                                  2333444444333221     111111  22335667888889999999998876532


Q ss_pred             EE--ecCCC---------cccccEEEEEecCCEEEEEeCC----------CcEEEEECCCCceeeeeccceecCceeEEe
Q psy18018        490 QT--LSGRN---------KHQSAVTCLQFNSRFVITSSDD----------GTVKLWDVKTGEFSTPLMSSFILNPFYFLI  548 (635)
Q Consensus       490 ~~--~~~~~---------~~~~~v~~~~~~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  548 (635)
                      ..  .....         ........+..++..++....+          ..|.+||..+++.+..+..           
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-----------  298 (355)
T d2bbkh_         230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-----------  298 (355)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----------
T ss_pred             EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-----------
Confidence            21  11100         0111223344467766655433          3699999999987765542           


Q ss_pred             ccCceecccccCCCe--EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018        549 YSQPLLCPHLQFNSR--FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET  608 (635)
Q Consensus       549 ~~~~v~~~~~s~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  608 (635)
                       ...+.+++|+|||+  ++++++.|+.|+|||+++++.++++.     .+......+.+.++
T Consensus       299 -~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~-----~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         299 -GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN-----QLGHGPQVITTADM  354 (355)
T ss_dssp             -EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC-----CCCSSCCEEECCCC
T ss_pred             -CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe-----CcCCCccEEEeCCC
Confidence             34578899999997  45677889999999999999999884     33333445555444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=5.1e-14  Score=133.72  Aligned_cols=306  Identities=6%  Similarity=-0.101  Sum_probs=195.9

Q ss_pred             eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchh--eeeccceeeeeeecCCCCCCceeeccCcce
Q psy18018          6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKA--LFMSHRSVEINWRTRPIKDPKVLKGHDDHV   83 (635)
Q Consensus         6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~--~~~~~~~~~~iwd~~~~~~~~~l~~h~~~v   83 (635)
                      -.+.|+..+.+....+.+|..   ..++||    |||++|+++.....  .....+..+.+||..+++++..+..|....
T Consensus        48 ~v~v~D~~tg~~~~~~~~~~~---~~~a~S----pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~  120 (373)
T d2madh_          48 QQWVLDAGSGSILGHVNGGFL---PNPVAA----HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             eEEEEECCCCCEEEEEeCCCC---ccEEEc----CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence            477888888888888887766   369999    99999998754321  122345667889999999999998887766


Q ss_pred             EEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCC-EEEEEeC
Q psy18018         84 ITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGK-LVVSGAY  160 (635)
Q Consensus        84 i~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~-~l~s~~~  160 (635)
                       .++......++...+.+.+.+|...          .++.+.+|+..+.+......    ...++.+  +++ .+++.+.
T Consensus       121 -~~~~~~~~~~~~s~dg~~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~  185 (373)
T d2madh_         121 -FDVGPYSWMNANTPNNADLLFFQFA----------AGPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCA  185 (373)
T ss_pred             -eEeccCCCcEEEEeCCCcEEEEEEc----------CCCceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcC
Confidence             4444443333333334444444332          24567778877766554443    3455666  655 5578899


Q ss_pred             CCeEEEEeCCCccceeecccc------ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEE--EEeCCCCCeEEEEee
Q psy18018        161 DYMVKIWNPDTEECLHAELQE------TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR--TLIGHTGGVWSSQMA  232 (635)
Q Consensus       161 dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~  232 (635)
                      |+++.+|+...++........      ...........+..++..+.++.+.+|+..++....  .+..+........+.
T Consensus       186 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (373)
T d2madh_         186 QGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec
Confidence            999999999988766543221      222233344556677777888999999987765432  223333333333221


Q ss_pred             --CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018        233 --GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ  310 (635)
Q Consensus       233 --~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (635)
                        ....+..+.|+....                                                               
T Consensus       266 ~~~~~~~~~~~d~~~~~---------------------------------------------------------------  282 (373)
T d2madh_         266 PGGWQQVAYLKSSDGIY---------------------------------------------------------------  282 (373)
T ss_pred             cCcceeeEEecCCCeEE---------------------------------------------------------------
Confidence              222223333322211                                                               


Q ss_pred             cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018        311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME  390 (635)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~  390 (635)
                                                           .+..++..++....++.+.+||..+++.+..+. +...+..++
T Consensus       283 -------------------------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a  324 (373)
T d2madh_         283 -------------------------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             -------------------------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence                                                 133455667777888899999999998887664 334455555


Q ss_pred             EeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE--EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec
Q psy18018        391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  465 (635)
Q Consensus       391 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  465 (635)
                      |+                               |||+.  +++++.|+.|++||+.+++.+..+..+......+++.
T Consensus       325 ~s-------------------------------pDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         325 VA-------------------------------QDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EC-------------------------------CCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            54                               56653  3567788899999999999999998777666666654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1.5e-15  Score=143.50  Aligned_cols=273  Identities=12%  Similarity=0.046  Sum_probs=182.0

Q ss_pred             EEEEecCcEEEEec-----CCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEE----------eCCCcEEEEE
Q psy18018        347 FGFQFDGVHVVSGS-----LDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG----------NADSTVKVWD  409 (635)
Q Consensus       347 ~~~s~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~----------~~dg~i~iwd  409 (635)
                      .+.+||++++++..     .++.|.+||..+++.+..+..+..+  .++|+  ++.|++.          ..++.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            35689999987753     3567999999999999888776555  56776  5556543          4578999999


Q ss_pred             ccCCcceeEEE----------------EEeeCCcEEEEEe--CCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEE
Q psy18018        410 IVSGTKKLMFR----------------ICLFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS  471 (635)
Q Consensus       410 ~~~~~~~~~~~----------------~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  471 (635)
                      ..+++......                .+++++++++.+.  .+..+.+|+..+++.+..+..+.... .....+...+.
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-IFPTAPDTFFM  163 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-EEEEETTEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce-EeecCCcceEE
Confidence            99987665543                3788999888765  45789999999999888877554332 22334455566


Q ss_pred             EeCCCcEEEEECCCCceeEEecC---CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC-cee
Q psy18018        472 GNADSTVKVWDIVSGQCLQTLSG---RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN-PFY  545 (635)
Q Consensus       472 ~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~  545 (635)
                      .+.|+....+..........+..   ...+...+....+  ++..++.++.++.+++|++..++............ ...
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence            66777776666554433332221   1112222333333  57788889999999999999876432211100000 000


Q ss_pred             EEeccCceecccccCCCeEEEEecCC----------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe--EEE
Q psy18018        546 FLIYSQPLLCPHLQFNSRFVITSSDD----------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL--VCA  613 (635)
Q Consensus       546 ~~~~~~~v~~~~~s~~~~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~--~l~  613 (635)
                      ..........++++|++..++....+          ..|.+||+.+++.+..+.      +...+.+++|+|||+  +++
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~------~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECCSSSCEEEE
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec------CCCCEEEEEEcCCCCeEEEE
Confidence            00012234567889999888776443          479999999999988873      345688999999997  456


Q ss_pred             EccCCCeeEeEEEEEeeec
Q psy18018        614 VGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       614 ~~~~dg~~~~~l~~~d~~~  632 (635)
                      +++.|+.    |++||.+.
T Consensus       318 ~~~~d~~----i~v~D~~t  332 (355)
T d2bbkh_         318 LSTGDKT----LYIHDAES  332 (355)
T ss_dssp             EETTTTE----EEEEETTT
T ss_pred             EECCCCE----EEEEECCC
Confidence            6777887    77777654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=4.5e-14  Score=131.78  Aligned_cols=272  Identities=11%  Similarity=0.127  Sum_probs=168.5

Q ss_pred             EEEEecCCCeEEEEEccCCceEE--eeeCCCcceeEEEEe--CCEEEEE-eCCCcEEEEEccCCcceeEE----------
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRH--TLMGHQSLTSGMELR--NNILVSG-NADSTVKVWDIVSGTKKLMF----------  419 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~--~~~l~s~-~~dg~i~iwd~~~~~~~~~~----------  419 (635)
                      .++++..++.|++|++.+...+.  ....|...+..++|+  +++|+++ ..|+.|++|++.........          
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            35777889999999997654333  233677889999998  5577554 55899999998765433221          


Q ss_pred             --EEEeeCCcEEEEEeC-CCcEEEEeCCCCceeee--eccCCccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeEE
Q psy18018        420 --RICLFDGVHVVSGSL-DTSIRVWEAESGNLRHT--LMGHQSLTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQCLQT  491 (635)
Q Consensus       420 --~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~  491 (635)
                        ..++|||++|++++. ++.+.+|+.........  ...+...+.++.+  +++++++++ .+..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence              237899999999885 66889998876654433  3344455555554  566666665 456799999876543322


Q ss_pred             ecC---CCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        492 LSG---RNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       492 ~~~---~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      ...   ..........+++  ++.+++.. ...+...+|+.................+. ..........+++++|++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE-NFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT-TCCSCCCEEEEEECTTSSEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeec-CCCccccceeEEEecccCce
Confidence            111   1113344566777  45555544 45667888887644322111111000000 00123345667899999866


Q ss_pred             EE-ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC-CeeEeEEEEEeee
Q psy18018        566 IT-SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN-GTEETKLLVLDFD  631 (635)
Q Consensus       566 ~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d-g~~~~~l~~~d~~  631 (635)
                      +. +..++.+.+|++........+....  .....+..++|+|||++|++++.+ +.  +++|.+|.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~a~spDGk~l~va~~~~~~--v~v~~id~~  308 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQKSHH--ISVYEIVGE  308 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEE--ECSSSCCCEEECTTSSEEEEECTTTCE--EEEEEEETT
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEe--CCCCCeeEEEEeCCCCEEEEEECCCCe--EEEEEEECC
Confidence            65 4567899999987654433332221  233457789999999988877654 55  677777654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=7.6e-13  Score=123.26  Aligned_cols=235  Identities=10%  Similarity=0.096  Sum_probs=144.7

Q ss_pred             CCCceEEEEecCcEEEEec-CCCeEEEEEccCCceEEee---eCCCcceeEEEEe--CCEEEEEeC-CCcEEEEEccCCc
Q psy18018        342 HVPDLFGFQFDGVHVVSGS-LDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNA-DSTVKVWDIVSGT  414 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~~  414 (635)
                      ..+..++|+|||++|++++ .++.|++|++........+   ..+...+..++++  +++|++++. ++.+.+|+.....
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccc
Confidence            3345567999999885554 5899999998765433222   2334456778887  567777764 6788999887665


Q ss_pred             ceeEEE-----------EEeeCCcEEEEEeC-CCcEEEEeCCCCceeeee------ccCCccEEEEEe--cCCEEE-EEe
Q psy18018        415 KKLMFR-----------ICLFDGVHVVSGSL-DTSIRVWEAESGNLRHTL------MGHQSLTSGMEL--RNNILV-SGN  473 (635)
Q Consensus       415 ~~~~~~-----------~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~-s~~  473 (635)
                      ......           .+++++++++.++. +..+.+|+..........      .........+.+  ++..++ +..
T Consensus       117 ~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~  196 (333)
T d1ri6a_         117 PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  196 (333)
T ss_dssp             EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence            444333           36788998887774 457899998765432211      112234455666  344544 445


Q ss_pred             CCCcEEEEECCCCc----eeEEec---CCCcccccEEEEEe--cCCEEE-EEeCCCcEEEEECCCCceeeeeccceecCc
Q psy18018        474 ADSTVKVWDIVSGQ----CLQTLS---GRNKHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNP  543 (635)
Q Consensus       474 ~dg~i~iwd~~~~~----~~~~~~---~~~~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  543 (635)
                      ..+...+|+.....    ....+.   ...........+++  ++++++ .+..++.+.+|++............     
T Consensus       197 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  271 (333)
T d1ri6a_         197 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-----  271 (333)
T ss_dssp             TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-----
T ss_pred             ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE-----
Confidence            66678888765322    111221   11112233444444  676555 4556788999998766544333221     


Q ss_pred             eeEEeccCceecccccCCCeEEEEec-CCCeEEEE--eCCCCce
Q psy18018        544 FYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLW--DVKTGEF  584 (635)
Q Consensus       544 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iw--d~~~~~~  584 (635)
                         ......+..++|+|||++|++++ .++.|++|  |.++|++
T Consensus       272 ---~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         272 ---QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ---EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ---eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence               12345678899999999887765 56899999  5566654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=6.5e-13  Score=125.47  Aligned_cols=276  Identities=7%  Similarity=-0.035  Sum_probs=162.2

Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEee----------CceeEEEecccceeeeccccccccCccceeee
Q psy18018        203 NTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGS----------TDRTLKGWSNAERILAIGQLIDSCEPTQIRHM  272 (635)
Q Consensus       203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  272 (635)
                      ..+.+||..+++.+.++.++..+...+..+++.++..+          .|+.|++||..+.+.......           
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~-----------  114 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----------  114 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----------
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC-----------
Confidence            34777799999999998887777555555677777643          588999999877543211000           


Q ss_pred             eeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec
Q psy18018        273 MQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD  352 (635)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  352 (635)
                                                                                  ..............++|+||
T Consensus       115 ------------------------------------------------------------p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_         115 ------------------------------------------------------------PDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             ------------------------------------------------------------TTSCSCCBSCCTTSEEECTT
T ss_pred             ------------------------------------------------------------CccceecccCCccceEECCC
Confidence                                                                        00001112233445789999


Q ss_pred             CcEEEEec-CCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018        353 GVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS  431 (635)
Q Consensus       353 ~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~  431 (635)
                      |++++++. .++.+.+||+.+++....+..+..... .......++..+.||.+..+++.........            
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~------------  201 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAASDLAAAPAAAGI------------  201 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEEECCSSCCCCEE------------
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEEEecCCceeeee------------
Confidence            99998776 579999999999998888776554321 1223556666677777776665533221100            


Q ss_pred             EeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecC--C---------Ccccc
Q psy18018        432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSG--R---------NKHQS  500 (635)
Q Consensus       432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~---------~~~~~  500 (635)
                                +..     .....+...+....+.....+....++.+++++...+........  .         .....
T Consensus       202 ----------~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  266 (368)
T d1mdah_         202 ----------VGA-----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             ----------CCC-----CSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             ----------eec-----ccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc
Confidence                      000     001111122222233222222222334455555544332221110  0         00112


Q ss_pred             cEEEEEecCCEEEEEeCC---------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe--EEEEec
Q psy18018        501 AVTCLQFNSRFVITSSDD---------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR--FVITSS  569 (635)
Q Consensus       501 ~v~~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~  569 (635)
                      ....+..++..++....+         ..|.+||..+++.+..+..            ...+.+++|+|||+  +++++.
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~------------~~~~~~~a~spDG~~~ly~s~~  334 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------------GHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------------EEEECEEEECCSSSCEEEEEET
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC------------CCceeEEEECCCCCEEEEEEeC
Confidence            234455566665544322         3589999999987766542            34678899999997  356777


Q ss_pred             CCCeEEEEeCCCCceEEeee
Q psy18018        570 DDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       570 ~d~~v~iwd~~~~~~~~~~~  589 (635)
                      .|+.|++||..+++.++.+.
T Consensus       335 ~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         335 GTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             TTTEEEEEESSSCEEEEECC
T ss_pred             CCCeEEEEECCCCCEEEEEE
Confidence            89999999999999998884

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=1.7e-12  Score=122.56  Aligned_cols=271  Identities=8%  Similarity=-0.088  Sum_probs=172.0

Q ss_pred             EEecCcEE--E-EecCCC--eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEcc
Q psy18018        349 FQFDGVHV--V-SGSLDT--SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIV  411 (635)
Q Consensus       349 ~s~~~~~l--~-~~~~dg--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~  411 (635)
                      ..++++..  + ....++  .+.++|..+++.+..+..+....  ++++  +..+++.+          .|+.|.+||..
T Consensus        27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~--~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~  104 (368)
T d1mdah_          27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCE--EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCc--ceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence            45666653  2 233344  57777999999988888776654  5554  66666543          46789999999


Q ss_pred             CCcceeEEE----------------EEeeCCcEEEEEe-CCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeC
Q psy18018        412 SGTKKLMFR----------------ICLFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA  474 (635)
Q Consensus       412 ~~~~~~~~~----------------~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~  474 (635)
                      +++......                .++|||++++++. .++.+.+||+.+++....+..+..... .......++..+.
T Consensus       105 t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~  183 (368)
T d1mdah_         105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSC  183 (368)
T ss_dssp             TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCC
T ss_pred             CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcC
Confidence            887766553                3899999998876 579999999999999888876554321 1234567788899


Q ss_pred             CCcEEEEECCCCceeEEecC---CCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCc-eeEEecc
Q psy18018        475 DSTVKVWDIVSGQCLQTLSG---RNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP-FYFLIYS  550 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~  550 (635)
                      ||.+..+++...........   ...+...+....++....+.....+.+++++...+.............. .......
T Consensus       184 Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (368)
T d1mdah_         184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecC
Confidence            99999999876544332221   1112233334445322222233456677777766554322211100000 0000011


Q ss_pred             CceecccccCCCeEEEEecCC---------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe--EEEEccCCC
Q psy18018        551 QPLLCPHLQFNSRFVITSSDD---------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL--VCAVGSRNG  619 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~--~l~~~~~dg  619 (635)
                      .....++++|++..++....+         ..|.+||..+++.+..+.      ....+.+++|+|||+  +++++..++
T Consensus       264 ~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~------~~~~~~~~a~spDG~~~ly~s~~~~~  337 (368)
T d1mdah_         264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS------NGHDSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE------EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             CCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec------CCCceeEEEECCCCCEEEEEEeCCCC
Confidence            233457888998877665322         359999999999988873      346788999999997  345667777


Q ss_pred             eeEeEEEEEeeec
Q psy18018        620 TEETKLLVLDFDV  632 (635)
Q Consensus       620 ~~~~~l~~~d~~~  632 (635)
                      .    |++||...
T Consensus       338 ~----v~v~D~~t  346 (368)
T d1mdah_         338 V----LDIYDAAS  346 (368)
T ss_dssp             E----EEEEESSS
T ss_pred             e----EEEEECCC
Confidence            7    77778654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=1.3e-10  Score=113.40  Aligned_cols=80  Identities=9%  Similarity=0.040  Sum_probs=58.4

Q ss_pred             eCCCcceEEEEe--cCCEEEEEeC---------CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEE
Q psy18018        139 VGHLAAVRCVQY--DGKLVVSGAY---------DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKV  207 (635)
Q Consensus       139 ~~h~~~v~~l~~--~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v  207 (635)
                      ..|...|.++.|  ||++|+.++.         ++.+.+||+.+++...............+.+++..++. ..++.+++
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~  136 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYV  136 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeE-eecccceE
Confidence            356688999999  9999998853         57889999999886544444444555555566666666 46778999


Q ss_pred             EECCCCeEEEEE
Q psy18018        208 WSATTGKCLRTL  219 (635)
Q Consensus       208 wd~~~~~~~~~~  219 (635)
                      |+..+++..+..
T Consensus       137 ~~~~~g~~~~~t  148 (470)
T d2bgra1         137 KIEPNLPSYRIT  148 (470)
T ss_dssp             ESSTTSCCEECC
T ss_pred             EECCCCceeeee
Confidence            999888766544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=2.7e-12  Score=119.33  Aligned_cols=267  Identities=9%  Similarity=-0.010  Sum_probs=158.1

Q ss_pred             EEecCcEEEEe-cCCCeEEEEEccCCceEEeee-CCCcceeEEEEe--CC--EEEEEeCCC-----------------cE
Q psy18018        349 FQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELR--NN--ILVSGNADS-----------------TV  405 (635)
Q Consensus       349 ~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~--~~--~l~s~~~dg-----------------~i  405 (635)
                      .+|||++|++. ..++.|.++|+.+++....+. .+......++++  ++  +++..+.+.                 .+
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            57899998665 467899999999998877665 356678888886  44  444444332                 12


Q ss_pred             EEEEccCCcceeEEE--------EEeeCCcEEEEEeCCC-cEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEEeCC
Q psy18018        406 KVWDIVSGTKKLMFR--------ICLFDGVHVVSGSLDT-SIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNAD  475 (635)
Q Consensus       406 ~iwd~~~~~~~~~~~--------~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~d  475 (635)
                      ..+|..+.+......        .++|+|+++++++.+. .+..++..+.+....+..... ....+..+++++.. +.+
T Consensus       159 ~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~  237 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDS  237 (441)
T ss_dssp             EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTC
T ss_pred             EeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe-CCC
Confidence            346666655443333        3788999888887654 233333333332222211100 00011225565544 456


Q ss_pred             CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEE-EEeCCCcEEEEECCCCceeeeeccceec-CceeE-EeccCc
Q psy18018        476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFIL-NPFYF-LIYSQP  552 (635)
Q Consensus       476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~-~~~~~~  552 (635)
                      +.+.+++....+.+..+.... ....+ .++.||++++ ++..++++.|||+++.+..  +...... ..+.. ....-.
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgk-sPhGv-~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~--~~~~~~~~~~~~~~~~~glg  313 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPK-NPHGL-NTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVAEPELGLG  313 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBS-SCCCE-EECTTSCEEEEECTTSSBEEEEEGGGHHHH--TTTSSCGGGGEEECCBCCSC
T ss_pred             CcEEEEcccCCceEEEEeCCC-CccCc-eECCCCCEEEEeCCcCCcEEEEEeehhhhH--hhccCCcceEEEeecccccC
Confidence            778888877777777776521 11112 3555898764 5678999999998753211  1110000 00000 000112


Q ss_pred             eecccccCCCeEEEEecCCCeEEEEeCCC----------CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc---cCCC
Q psy18018        553 LLCPHLQFNSRFVITSSDDGTVKLWDVKT----------GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG---SRNG  619 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~---~~dg  619 (635)
                      ....+|+++|..+.+...|..|..|++..          ...+..+..+-..+|...+.+.+|+|||++|+++   +.|.
T Consensus       314 plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence            23457999999999999999999999742          1233333222124677788888999999999999   5554


Q ss_pred             e
Q psy18018        620 T  620 (635)
Q Consensus       620 ~  620 (635)
                      .
T Consensus       394 ~  394 (441)
T d1qnia2         394 F  394 (441)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.22  E-value=4.5e-10  Score=104.20  Aligned_cols=209  Identities=11%  Similarity=0.053  Sum_probs=127.0

Q ss_pred             eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCC-cEEEEEccCCcceeEEEE--------EeeCCcEEEEE
Q psy18018        364 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADS-TVKVWDIVSGTKKLMFRI--------CLFDGVHVVSG  432 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~~  432 (635)
                      .+..+|..+.+....+.... ....+.++  +.++++.+.+. .+..++..+.+.......        +.++|+++..+
T Consensus       157 ~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             EEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             eEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence            35567777777766655433 34555554  66666665543 333344444433333332        45688877654


Q ss_pred             eCCCcEEEEeCCCCceeeeeccCCcc-EEEEEecCCEE-EEEeCCCcEEEEECCCCceeEEecCCCccc----------c
Q psy18018        433 SLDTSIRVWEAESGNLRHTLMGHQSL-TSGMELRNNIL-VSGNADSTVKVWDIVSGQCLQTLSGRNKHQ----------S  500 (635)
Q Consensus       433 ~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~  500 (635)
                       .++.+.+++....+.+..+....++ -..++++++++ +++..+++|.+||+.+.+.  .+.+...+.          -
T Consensus       236 -~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~--~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         236 -DSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD--LFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             -TCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH--HTTTSSCGGGGEEECCBCCS
T ss_pred             -CCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh--HhhccCCcceEEEeeccccc
Confidence             4677788877777777777665543 23456678865 5677899999999865321  111111111          1


Q ss_pred             cEEEEEec--CCEEEEEeCCCcEEEEECCCC------c----eeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        501 AVTCLQFN--SRFVITSSDDGTVKLWDVKTG------E----FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       501 ~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~------~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      .....+|+  |..+.+.+.|..|..|++...      .    ....+..+      +...|...+.+.+++|||+||+++
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~------y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ------YQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS------SCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc------cCCCCCccccccccCCCCcEEEec
Confidence            22334664  677788889999999998521      1    11111111      224688889999999999999999


Q ss_pred             ---cCCC----------eEEEEeCCCC
Q psy18018        569 ---SDDG----------TVKLWDVKTG  582 (635)
Q Consensus       569 ---~~d~----------~v~iwd~~~~  582 (635)
                         +.|.          +-.+.|+...
T Consensus       387 ~k~s~dr~~~~g~~~~~~~q~~~i~~~  413 (441)
T d1qnia2         387 SKFSKDRFLPVGPLHPENDQLIDISGE  413 (441)
T ss_dssp             ESCCGGGSCCCSSSCCEEEEEEECSSS
T ss_pred             CccccccCcCCCCCCCccceeEEecCC
Confidence               5553          4567787643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.04  E-value=8.9e-09  Score=100.10  Aligned_cols=151  Identities=8%  Similarity=0.025  Sum_probs=95.1

Q ss_pred             eeeeecCCCCCC-----ccccccccceEEEEEecCCCCCCCceeecCCcchhe-eeccceeeeeeecCCCCCCceeeccC
Q psy18018          7 EINWRTRPIKDP-----KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKAL-FMSHRSVEINWRTRPIKDPKVLKGHD   80 (635)
Q Consensus         7 ~~~~~~~~~~~~-----~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~-~~~~~~~~~iwd~~~~~~~~~l~~h~   80 (635)
                      ++.|+..+.++.     ..|.+|...| .+++||    |||++||.++..+.+ +.+....+.+||..+++ +..+..|.
T Consensus        38 ~~~~~~~t~~~~~~~~~~~~~~~~~~i-~~~~~S----pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~  111 (470)
T d2bgra1          38 ILVFNAEYGNSSVFLENSTFDEFGHSI-NDYSIS----PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP  111 (470)
T ss_dssp             EEEEETTTCCEEEEECTTTTTTSSSCC-CEEEEC----TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC
T ss_pred             EEEEECCCCCEEEEEchhhhhhccCcc-ceeEEC----CCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCC
Confidence            356776666654     3666777888 999999    999999988754433 22345667789999877 45688888


Q ss_pred             cceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEE
Q psy18018         81 DHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVV  156 (635)
Q Consensus        81 ~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~  156 (635)
                      +.+ ..+.||  |+++|.. .++.+.+|+..+++..-.+......... +..... +. ...+.+....+.|  ||++||
T Consensus       112 ~~~-~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~-~g~~d~-~~-~~~~~~~~~~~~wSPDGk~ia  186 (470)
T d2bgra1         112 NNT-QWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY-NGITDW-VY-EEEVFSAYSALWWSPNGTFLA  186 (470)
T ss_dssp             TTE-EEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE-ESBCCH-HH-HHHTSSSSBCEEECTTSSEEE
T ss_pred             ccc-cccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccc-ccccce-ee-eeeecCCccccEECCCCCccc
Confidence            888 899999  9999985 4667888888877644222111111110 000000 00 0012334455667  899999


Q ss_pred             EEeCCCe-EEEEe
Q psy18018        157 SGAYDYM-VKIWN  168 (635)
Q Consensus       157 s~~~dg~-v~iwd  168 (635)
                      ....|.+ +..|.
T Consensus       187 ~~~~d~~~v~~~~  199 (470)
T d2bgra1         187 YAQFNDTEVPLIE  199 (470)
T ss_dssp             EEEEECTTCCEEE
T ss_pred             eeEecCCcCceEE
Confidence            9876544 55444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=1.5e-06  Score=77.97  Aligned_cols=244  Identities=10%  Similarity=0.053  Sum_probs=142.2

Q ss_pred             CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018        344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  421 (635)
                      ..-++++|||+++++...++.|..++.. ++ ...+......+.+++++  ++++++...++.+..++.....       
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-------  100 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-------  100 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-------
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccc-------
Confidence            3457899999999999989999888865 33 23344445566777765  3344444444444443332211       


Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCC---
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGR---  495 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---  495 (635)
                                              +...... .........+.+  +++++++.+.++.+..++...+.........   
T Consensus       101 ------------------------~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~  156 (302)
T d2p4oa1         101 ------------------------GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA  156 (302)
T ss_dssp             ------------------------SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred             ------------------------cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc
Confidence                                    1111111 112234555655  4557777778888888888766533322210   


Q ss_pred             ----CcccccEEEEEecCC-EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        496 ----NKHQSAVTCLQFNSR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       496 ----~~~~~~v~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                          .........+.+++. ++++.+..+.|..++...........         ..........++|++||++.++...
T Consensus       157 ~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~pdgia~d~dG~l~va~~~  227 (302)
T d2p4oa1         157 RSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE---------IFVEQTNIDDFAFDVEGNLYGATHI  227 (302)
T ss_dssp             CSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCE---------EEEESCCCSSEEEBTTCCEEEECBT
T ss_pred             eeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccc---------cccCCCCCcceEECCCCCEEEEEcC
Confidence                112234566777654 45556677888888877654332211         1112345678999999999888888


Q ss_pred             CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe---CCCCeEEEEccCCC--------eeEeEEEEEeeecC
Q psy18018        571 DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA---SETKLVCAVGSRNG--------TEETKLLVLDFDVD  633 (635)
Q Consensus       571 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~---s~d~~~l~~~~~dg--------~~~~~l~~~d~~~~  633 (635)
                      ++.|..++.. ++.......   ...-...++++|   ++|++.|.+++..+        ...-+++.+|....
T Consensus       228 ~~~V~~i~p~-G~~~~~~~~---~~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~~~~~~~~~~~~  297 (302)
T d2p4oa1         228 YNSVVRIAPD-RSTTIIAQA---EQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRLEVGKP  297 (302)
T ss_dssp             TCCEEEECTT-CCEEEEECG---GGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEEEEEECSSC
T ss_pred             CCcEEEECCC-CCEEEEEec---CCCCCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCCCeEEEEeCCCC
Confidence            9999999865 443222211   122345789999   77888887665432        11245677665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.82  E-value=1.8e-06  Score=76.38  Aligned_cols=235  Identities=13%  Similarity=0.221  Sum_probs=141.7

Q ss_pred             CCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc------ceeEEEEeCCEEEEEeCCCcEEEEEccCCcce
Q psy18018        343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS------LTSGMELRNNILVSGNADSTVKVWDIVSGTKK  416 (635)
Q Consensus       343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~  416 (635)
                      .+.-++++++++.+++-..+..|++||.+ ++.+..+.....      ....+++.       . +              
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~-------~-~--------------   80 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-------R-N--------------   80 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-------T-T--------------
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccc-------c-c--------------
Confidence            34567889999988877778899999965 666665532111      11112211       0 0              


Q ss_pred             eEEEEEeeCCcEEEE-EeCCCcEEEEeCCCCceeeeecc-CCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        417 LMFRICLFDGVHVVS-GSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       417 ~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                              .+..+++ .+.++.|..++. .++....+.. ......+++.  +++++++....+.+.+++.. ++.+..+
T Consensus        81 --------~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~  150 (279)
T d1q7fa_          81 --------SGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF  150 (279)
T ss_dssp             --------TTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             --------ccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecc
Confidence                    1111111 123334555544 2444444432 2334445555  46677777777778888854 5666665


Q ss_pred             cCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD  570 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  570 (635)
                      ... .+......+++  +++.+++....+.|++||.. ++.+..+...         ........+++.|+|+++++-..
T Consensus       151 g~~-~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~---------g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         151 GCS-KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE---------GITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             ECT-TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT---------TTSCSEEEEEECTTCCEEEEECS
T ss_pred             ccc-ccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeeccc---------ccccCCcccccccCCeEEEEECC
Confidence            432 24455666777  46777888888999999965 5555444211         01234567899999998776543


Q ss_pred             -CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018        571 -DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL  628 (635)
Q Consensus       571 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~  628 (635)
                       ++.|.+++ .+|+.+..+..   .......+.|++.|||.++++ +.+..  +++|.|
T Consensus       220 ~~~~v~~f~-~~G~~~~~~~~---~~~~~~p~~vav~~dG~l~V~-~~n~~--v~~fr~  271 (279)
T d1q7fa_         220 NNFNLTIFT-QDGQLISALES---KVKHAQCFDVALMDDGSVVLA-SKDYR--LYIYRY  271 (279)
T ss_dssp             SSCEEEEEC-TTSCEEEEEEE---SSCCSCEEEEEEETTTEEEEE-ETTTE--EEEEEC
T ss_pred             CCcEEEEEC-CCCCEEEEEeC---CCCCCCEeEEEEeCCCcEEEE-eCCCe--EEEEEe
Confidence             45799999 56888877743   222345789999999986654 45665  566654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=5.4e-06  Score=74.46  Aligned_cols=111  Identities=4%  Similarity=0.002  Sum_probs=72.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeee
Q psy18018        511 FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVS  590 (635)
Q Consensus       511 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  590 (635)
                      ++++-+..+.|..|++.....+...........    ......-.+++.++|++.++....+.|.+||.+.++.+..+. 
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~----~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~-  264 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-  264 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCC----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-
T ss_pred             EEEEeecccceEEeeccCccccceeeEEEEccc----cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE-
Confidence            445556778888888764433221111000000    011124568899999988887788999999998887766552 


Q ss_pred             ccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEEeeecCC
Q psy18018        591 LDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       591 ~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                          ......++++|.||++ +.++.+.+|.    ||.+|....+
T Consensus       265 ----~p~~~~t~~afg~d~~~lyVt~~~~g~----i~~~~~~~~G  301 (314)
T d1pjxa_         265 ----CPFEKPSNLHFKPQTKTIFVTEHENNA----VWKFEWQRNG  301 (314)
T ss_dssp             ----CSSSCEEEEEECTTSSEEEEEETTTTE----EEEEECSSCB
T ss_pred             ----CCCCCEEEEEEeCCCCEEEEEECCCCc----EEEEECCCCC
Confidence                3345688999999997 4455666776    8988876654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=3.1e-06  Score=73.97  Aligned_cols=237  Identities=9%  Similarity=0.010  Sum_probs=128.5

Q ss_pred             CCCceEEEEecCcEEEEe-cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018        342 HVPDLFGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  420 (635)
                      ..+..++++++|+..++. ...+.+..++............-......++++                            
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~----------------------------   65 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD----------------------------   65 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEEC----------------------------
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEc----------------------------
Confidence            345567788888866654 445666666554332222111111122334433                            


Q ss_pred             EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018        421 ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH  498 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  498 (635)
                         +++..+++....+.+++++..+........+ .....++++  +++++++-..+..+..++............   .
T Consensus        66 ---~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~  138 (260)
T d1rwia_          66 ---GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---G  138 (260)
T ss_dssp             ---TTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC---S
T ss_pred             ---CCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeec---c
Confidence               2333333333333444444333333322222 233456665  456666665666677777654332221111   1


Q ss_pred             cccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        499 QSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       499 ~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      ......+++  +++++++...++.|..++............           .......+++.++|+++++-...+.|..
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~p~gi~~d~~g~l~vsd~~~~~i~~  207 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-----------DITAPWGIAVDEAGTVYVTEHNTNQVVK  207 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-----------SCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             cCCcceeeecCCCCEeeeccccccccccccccceeeeeecc-----------ccCCCccceeeeeeeeeeeecCCCEEEE
Confidence            122345666  578888878888899999775543221111           1234467899999999988888889998


Q ss_pred             EeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018        577 WDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD  633 (635)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~  633 (635)
                      ++...... ..+.    ...-.....|+++++|.++++-..+++    |+.++...+
T Consensus       208 ~~~~~~~~-~~~~----~~~~~~P~~i~~d~~g~l~vad~~~~r----I~~i~~~~~  255 (260)
T d1rwia_         208 LLAGSTTS-TVLP----FTGLNTPLAVAVDSDRTVYVADRGNDR----VVKLTSLEH  255 (260)
T ss_dssp             ECTTCSCC-EECC----CCSCCCEEEEEECTTCCEEEEEGGGTE----EEEECCCGG
T ss_pred             EeCCCCeE-EEEc----cCCCCCeEEEEEeCCCCEEEEECCCCE----EEEEeCCCC
Confidence            88654432 2221    122345689999999988777666665    666655443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.64  E-value=4.7e-05  Score=74.48  Aligned_cols=106  Identities=12%  Similarity=0.063  Sum_probs=65.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeecccccee----------EEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018        152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETEV----------ELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG  221 (635)
Q Consensus       152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  221 (635)
                      +..|..++.++.|.-+|.++|+.+.++......          ...-....++.++.++.++.+.-.|..+|+.+.....
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecccC
Confidence            345666677788888888888887765322110          0000111256788999999999999999999876643


Q ss_pred             CCC---CeE---EEEeeCCEEEEeeC------ceeEEEecccceeeec
Q psy18018        222 HTG---GVW---SSQMAGNIIISGST------DRTLKGWSNAERILAI  257 (635)
Q Consensus       222 h~~---~v~---~~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~  257 (635)
                      ...   .+.   ...+..+.++.++.      .|.|+.+|..++++..
T Consensus       157 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCcccee
Confidence            221   111   11113555565542      5789999988876544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.55  E-value=5.5e-05  Score=69.49  Aligned_cols=271  Identities=10%  Similarity=0.075  Sum_probs=139.0

Q ss_pred             EEEEecC--CCeEEEEEcc--CCceE--Eee-eCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEE----
Q psy18018        355 HVVSGSL--DTSIRVWEAE--SGNLR--HTL-MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRI----  421 (635)
Q Consensus       355 ~l~~~~~--dg~i~v~~~~--~~~~~--~~~-~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----  421 (635)
                      .|++|+.  .+.|..+.++  +++..  ... ......+..|+++  ++.|+++.. +.+..|.+...........    
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            3566643  5577666554  44331  221 2234456678887  567776654 5678887765433322221    


Q ss_pred             -------EeeCCcEEE--EEe-CCCcEEEEeCCC-C------------ceeeee----ccCCccEEEEEe--cCCEEEEE
Q psy18018        422 -------CLFDGVHVV--SGS-LDTSIRVWEAES-G------------NLRHTL----MGHQSLTSGMEL--RNNILVSG  472 (635)
Q Consensus       422 -------~~~~~~~l~--~~~-~d~~i~~~d~~~-~------------~~~~~~----~~~~~~v~~~~~--~~~~l~s~  472 (635)
                             ++++++.+.  ++. ..+.+..+.+.. +            +.-...    ......+.++.+  ++++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence                   345666433  222 235555544321 1            110000    111223455655  57777666


Q ss_pred             eC-CCcEEEEECCCCceeE---EecCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECCCCceeeeecccee-cCc-
Q psy18018        473 NA-DSTVKVWDIVSGQCLQ---TLSGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFI-LNP-  543 (635)
Q Consensus       473 ~~-dg~i~iwd~~~~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~-~~~-  543 (635)
                      +. ...|.+|+......+.   ...... .......++|  +++++++. ..+++|.+|++..++.......... ..+ 
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~-~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~  241 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPD-PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecC-CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence            53 4578888765432222   222111 2345667777  67776554 4678999999987654322211100 000 


Q ss_pred             ------eeEEeccCceecccccCCCeEEEEecC------CCeEEEEeCCCCceEEeeeec-cCCCCCceEEEEEeCC-CC
Q psy18018        544 ------FYFLIYSQPLLCPHLQFNSRFVITSSD------DGTVKLWDVKTGEFIRNLVSL-DSGGSGGVVWRIRASE-TK  609 (635)
Q Consensus       544 ------~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~-d~  609 (635)
                            ............+.++|||++|+++..      ...|..|++.....+.....+ ...........++|+| +|
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence                  000011223456889999999988632      234777877654333222111 1112334456799998 89


Q ss_pred             eEEEEcc-CCCeeEeEEEEEe
Q psy18018        610 LVCAVGS-RNGTEETKLLVLD  629 (635)
Q Consensus       610 ~~l~~~~-~dg~~~~~l~~~d  629 (635)
                      ++|+++. .++.  +.+|.+|
T Consensus       322 ~~l~va~~~s~~--v~v~~~~  340 (365)
T d1jofa_         322 EWMAITDDQEGW--LEIYRWK  340 (365)
T ss_dssp             TEEEEECSSSCE--EEEEEEE
T ss_pred             CEEEEEeCCCCe--EEEEEEe
Confidence            9777665 4555  4555443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=4.1e-05  Score=67.09  Aligned_cols=189  Identities=16%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             EEEEeeCCcEEEEEeCCC---cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe-CCCcEEEE--ECCCCceeE
Q psy18018        419 FRICLFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN-ADSTVKVW--DIVSGQCLQ  490 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iw--d~~~~~~~~  490 (635)
                      ...++|||+.|+......   .+.+.+...+... .+..+........+  +++.++... .++...++  .........
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  121 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccccccccee
Confidence            456899999999875443   4777777665543 33345555555555  566555444 33333333  333333222


Q ss_pred             EecCCCcccccEEEEEe--cCC-EEEEEeCCCc--EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018        491 TLSGRNKHQSAVTCLQF--NSR-FVITSSDDGT--VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV  565 (635)
Q Consensus       491 ~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  565 (635)
                      ...    .........+  ++. .+++...++.  |.+.++..+.......            .........++|+++.+
T Consensus       122 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         122 VTD----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW------------EGSQNQDADVSSDGKFM  185 (269)
T ss_dssp             CCC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC------------SSSEEEEEEECTTSSEE
T ss_pred             eee----ccccccccccccccccceecccccCCceEeeeecccccceeeec------------cccccccccccccccee
Confidence            222    1122222222  444 4444445554  5555665554322211            23445566899999988


Q ss_pred             EEecCCC---eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018        566 ITSSDDG---TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV  632 (635)
Q Consensus       566 ~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~  632 (635)
                      +..+.++   .+.+.|...+... .+      ..........|||||++|+..+..+. .-.||.++.+.
T Consensus       186 ~~~~~~~~~~~i~~~~~~~~~~~-~~------~~~~~~~~p~~SPDG~~i~f~s~~~~-~~~l~~~~~dg  247 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQDLATGGVQ-VL------SSTFLDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDG  247 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEE-EC------CCSSSCEEEEECTTSSEEEEEEEETT-EEEEEEEETTS
T ss_pred             EEEeecCCceeeeEeecccccce-Ee------ecCccccceEECCCCCEEEEEEcCCC-CcEEEEEECCC
Confidence            8766543   4555565555432 22      23345667889999998876554432 25688887764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.50  E-value=0.00014  Score=70.69  Aligned_cols=248  Identities=15%  Similarity=0.122  Sum_probs=146.9

Q ss_pred             CcEEEEecCCCeEEEEEccCCceEEeeeCCCc----ce-eEEEEeCCEEEEEeC------CCcEEEEEccCCcceeEEEE
Q psy18018        353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----LT-SGMELRNNILVSGNA------DSTVKVWDIVSGTKKLMFRI  421 (635)
Q Consensus       353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~----~v-~~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~  421 (635)
                      +..++.++.+|.+.-.|.++|+.+........    .+ ..-...++.++.+..      +|.|+-+|+.+++.......
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            45677888999999999999998776543221    11 111223455555553      67899999999987765442


Q ss_pred             -----------------------------------------------EeeCCcEEEEEeC----------------CCcE
Q psy18018        422 -----------------------------------------------CLFDGVHVVSGSL----------------DTSI  438 (635)
Q Consensus       422 -----------------------------------------------~~~~~~~l~~~~~----------------d~~i  438 (635)
                                                                     ..++...+..+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence                                                           2233344444433                3467


Q ss_pred             EEEeCCCCceeeeeccCCc-----------cEEEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCC--------
Q psy18018        439 RVWEAESGNLRHTLMGHQS-----------LTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRN--------  496 (635)
Q Consensus       439 ~~~d~~~~~~~~~~~~~~~-----------~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------  496 (635)
                      ...|.++|+.+..++....           ....+..+++   .++.++.+|.+.++|..+++.+...+...        
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~  354 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence            8889999998887764322           1122333443   57788999999999999998875432210        


Q ss_pred             ------------------------------cccccEEEEEecCCEEEEEeC-----------------------------
Q psy18018        497 ------------------------------KHQSAVTCLQFNSRFVITSSD-----------------------------  517 (635)
Q Consensus       497 ------------------------------~~~~~v~~~~~~~~~l~~~~~-----------------------------  517 (635)
                                                    .+.....+...+..+++....                             
T Consensus       355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (571)
T d2ad6a1         355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence                                          000000111111223332221                             


Q ss_pred             --------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018        518 --------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV  589 (635)
Q Consensus       518 --------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  589 (635)
                              .|.|.-+|+.+++.+-+....            .+..+-.++-.+.++++|+.||.++-+|.++|+.+.++.
T Consensus       435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~------------~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEK------------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEES------------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCcccCCcccEEEeccCCCceeeEcCCC------------CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                    145777777777766554321            122222223356677889999999999999999999885


Q ss_pred             eccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018        590 SLDSGGSGGVVWRIRASETKL-VCAVGS  616 (635)
Q Consensus       590 ~~~~~~~~~~i~~l~~s~d~~-~l~~~~  616 (635)
                      . .......++   .|..||+ |+++..
T Consensus       503 l-~~~~~a~P~---ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         503 M-PSGGIGSPM---TYSFKGKQYIGSMY  526 (571)
T ss_dssp             C-SSCCCSCCE---EEEETTEEEEEEEE
T ss_pred             C-CCCceecce---EEEECCEEEEEEEe
Confidence            3 222334444   3445775 665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.49  E-value=0.00014  Score=65.29  Aligned_cols=250  Identities=9%  Similarity=0.083  Sum_probs=134.6

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRIC  422 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  422 (635)
                      ...+|.++|+..++-...+.|..|+..++.....+.........++++  ++++++...+.                   
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~-------------------  103 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF-------------------  103 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS-------------------
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCC-------------------
Confidence            346788888877777778888888887766555555555556667665  22222221110                   


Q ss_pred             eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC--CccEEEEEe--cCCEEEEEeC------CCcEEEEECCCCceeEEe
Q psy18018        423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH--QSLTSGMEL--RNNILVSGNA------DSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~  492 (635)
                                ...+.+...+.............  ......+.+  ++++.++...      .+.+..++... +.+..+
T Consensus       104 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~  172 (319)
T d2dg1a1         104 ----------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPI  172 (319)
T ss_dssp             ----------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEE
T ss_pred             ----------ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEE
Confidence                      01122333333333322222111  122344444  4555444322      12344444433 222322


Q ss_pred             cCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEECCCCc-eeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018        493 SGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVKTGE-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS  568 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  568 (635)
                      ..   .-.....+++  +++.| ++-+..+.|..|++.... ...........    ........-.+++.++|++.++.
T Consensus       173 ~~---~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~----~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         173 IQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY----YFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             EE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE----ECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             ee---ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeee----ccCCccceeeeeEcCCCCEEEEE
Confidence            21   2233456777  56655 555667899999986432 22211111000    00011124568899999988888


Q ss_pred             cCCCeEEEEeCCCCceEEeeeecc-CCCCCceEEEEEeCCCCeEEEEccCCCe--eEeEEEEEeeec
Q psy18018        569 SDDGTVKLWDVKTGEFIRNLVSLD-SGGSGGVVWRIRASETKLVCAVGSRNGT--EETKLLVLDFDV  632 (635)
Q Consensus       569 ~~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~i~~l~~s~d~~~l~~~~~dg~--~~~~l~~~d~~~  632 (635)
                      ...+.|.++| .+|+.+..+.... ..++...+++++|.+++..|.+...+..  -.-.||.++...
T Consensus       246 ~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~  311 (319)
T d2dg1a1         246 YGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  311 (319)
T ss_dssp             ETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             cCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence            8899999999 4799888774321 1234456889999998877766543211  123477776643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.45  E-value=0.00047  Score=66.91  Aligned_cols=81  Identities=11%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCC-EEE
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR-FVI  513 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~  513 (635)
                      |.+.-+|+.+++.+.+........ -.++-.+.+++.|+.||.++.+|.++|+.+.++...............+|+ |++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            678889999999887665322111 134557889999999999999999999999998875544444433456775 555


Q ss_pred             EEe
Q psy18018        514 TSS  516 (635)
Q Consensus       514 ~~~  516 (635)
                      +.+
T Consensus       518 v~a  520 (560)
T d1kv9a2         518 IMA  520 (560)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.43  E-value=0.00025  Score=69.02  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=56.0

Q ss_pred             CCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCC-EE
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR-FV  512 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l  512 (635)
                      .|.+.-+|+.+++.+.+........ -.+...+.++++++.||.++.+|.++|+.+.++...............||+ |+
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            3679999999999887665322111 124456888999999999999999999999988764333332222344765 55


Q ss_pred             EEEe
Q psy18018        513 ITSS  516 (635)
Q Consensus       513 ~~~~  516 (635)
                      ++..
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.39  E-value=0.00039  Score=67.48  Aligned_cols=249  Identities=14%  Similarity=0.145  Sum_probs=146.6

Q ss_pred             cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc----e-eEEEEeCCEEEEEeC------CCcEEEEEccCCcceeEEE
Q psy18018        352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL----T-SGMELRNNILVSGNA------DSTVKVWDIVSGTKKLMFR  420 (635)
Q Consensus       352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~----v-~~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~  420 (635)
                      .+..++.++.++.+.-.|..+|+.+.........    + ..-....+.++.+..      .|.|.-+|.++++....+.
T Consensus       116 ~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            3556888888999999999999998777543211    1 111122445555432      3678889998887766654


Q ss_pred             E----------------------------------------EeeCCcEEEEEeC-------------------CCcEEEE
Q psy18018        421 I----------------------------------------CLFDGVHVVSGSL-------------------DTSIRVW  441 (635)
Q Consensus       421 ~----------------------------------------~~~~~~~l~~~~~-------------------d~~i~~~  441 (635)
                      .                                        ..+....+..+..                   ...|...
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            2                                        2223333333221                   2457778


Q ss_pred             eCCCCceeeeeccCCcc-----------EEEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCc----------
Q psy18018        442 EAESGNLRHTLMGHQSL-----------TSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNK----------  497 (635)
Q Consensus       442 d~~~~~~~~~~~~~~~~-----------v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------  497 (635)
                      |+++++....++.....           ...+..+++   .++.+..+|.+.++|..+++++........          
T Consensus       276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence            89999887766542221           123333443   677889999999999999988765432100          


Q ss_pred             -------------------------ccccEEEEEecCCEEEEEeC-----------------------------------
Q psy18018        498 -------------------------HQSAVTCLQFNSRFVITSSD-----------------------------------  517 (635)
Q Consensus       498 -------------------------~~~~v~~~~~~~~~l~~~~~-----------------------------------  517 (635)
                                               +.-.-.+...+..+++....                                   
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  435 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence                                     00000011111222322211                                   


Q ss_pred             -CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCC
Q psy18018        518 -DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS  596 (635)
Q Consensus       518 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  596 (635)
                       .|.|.-||+.+++.+-.....            .+..+-.++-.+.++++|+.||.++.+|.++|+.+.++.. .....
T Consensus       436 ~~G~l~A~D~~tGk~~W~~~~~------------~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l-~~~~~  502 (560)
T d1kv9a2         436 VSGALLAWDPVKQKAAWKVPYP------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA-QSGIV  502 (560)
T ss_dssp             CEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCC
T ss_pred             cccceEEEeCCCCeEeeeccCC------------CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC-CCCcc
Confidence             246777888888777655432            1222222333567888899999999999999999998853 22233


Q ss_pred             CceEEEEEeCCCCe-EEEEcc
Q psy18018        597 GGVVWRIRASETKL-VCAVGS  616 (635)
Q Consensus       597 ~~~i~~l~~s~d~~-~l~~~~  616 (635)
                      ..++   .+..||+ |+++..
T Consensus       503 ~~P~---ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         503 AAPM---TFELAGRQYVAIMA  520 (560)
T ss_dssp             SCCE---EEEETTEEEEEEEE
T ss_pred             ccCE---EEEECCEEEEEEEe
Confidence            3343   4445775 666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=0.00042  Score=60.36  Aligned_cols=220  Identities=17%  Similarity=0.127  Sum_probs=118.3

Q ss_pred             eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC-C--cEEEEEccCCccee--------EEEEEeeCCcEEE
Q psy18018        364 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD-S--TVKVWDIVSGTKKL--------MFRICLFDGVHVV  430 (635)
Q Consensus       364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d-g--~i~iwd~~~~~~~~--------~~~~~~~~~~~l~  430 (635)
                      .|.+.|....... .+..+...+...+|+  ++.|+..... +  .+.+.+...+....        ....++|+|+.++
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            5778787644443 444445667788887  6677655433 3  35555555443322        2234788998888


Q ss_pred             EEeCC-Cc--EEEEeCCCCceeeeeccCCccEE-EEEecCC-EEEEEeCCCc--EEEEECCCCceeEEecCCCcccccEE
Q psy18018        431 SGSLD-TS--IRVWEAESGNLRHTLMGHQSLTS-GMELRNN-ILVSGNADST--VKVWDIVSGQCLQTLSGRNKHQSAVT  503 (635)
Q Consensus       431 ~~~~d-~~--i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~-~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~  503 (635)
                      ..... +.  +..+................... .....++ .+++...++.  |...++..+.... +..   ......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~---~~~~~~  174 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITW---EGSQNQ  174 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCC---SSSEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eec---cccccc
Confidence            76543 22  22333332333222222222222 2223444 4555555554  5555655544332 222   333344


Q ss_pred             EEEe--cCCEEEEEeCCC-c--EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC---CCeEE
Q psy18018        504 CLQF--NSRFVITSSDDG-T--VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD---DGTVK  575 (635)
Q Consensus       504 ~~~~--~~~~l~~~~~d~-~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~v~  575 (635)
                      ...+  +++.++..+.++ .  +.+.+...+...  ...           .........|||||+.|+-.+.   ...+.
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~-----------~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLS-----------STFLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECC-----------CSSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccce--Eee-----------cCccccceEECCCCCEEEEEEcCCCCcEEE
Confidence            4444  677777665543 3  444555444322  111           2334566789999998875543   35789


Q ss_pred             EEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018        576 LWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE  607 (635)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  607 (635)
                      ++++..+.. ..+     ....+.+...+|||
T Consensus       242 ~~~~dg~~~-~~l-----t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         242 LVSTDGRFK-ARL-----PATDGQVKFPAWSP  267 (269)
T ss_dssp             EEETTSCCE-EEC-----CCSSSEEEEEEECC
T ss_pred             EEECCCCCE-EEE-----eCCCCcEEeEEeCC
Confidence            999987665 444     24466788899998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=0.00028  Score=61.79  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             EeeCCCcEEEEeCCCCeEEEEee-CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc--cc-ceeEEeeec
Q psy18018        117 SGSRDATLRVWHIESGECLHVLV-GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL--QE-TEVELSHGY  190 (635)
Q Consensus       117 ~~~~dg~i~vwd~~~~~~~~~l~-~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~-~~~~~~~~~  190 (635)
                      ..+.++.|..++. .++....+. ........+++  ++..+++....+.+.+++... +.+..+.  .+ .........
T Consensus        88 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d  165 (279)
T d1q7fa_          88 ERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVN  165 (279)
T ss_dssp             ECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEEC
T ss_pred             ccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeec
Confidence            3444455666664 355555553 33455667777  677777777778888888654 3333321  11 122223333


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCCCeEEEEee--CCEEEEee-CceeEEEecccc
Q psy18018        191 ALRSRIVSGSDDNTLKVWSATTGKCLRTLI--GHTGGVWSSQMA--GNIIISGS-TDRTLKGWSNAE  252 (635)
Q Consensus       191 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~~-~dg~i~~w~~~~  252 (635)
                      +.++.+++....+.|+++|. +++.+.++.  +.......++++  ++.+++-. .++.|.+++.+.
T Consensus       166 ~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         166 DKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             SSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             cceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            44556666677889999995 567777763  345567888884  66666644 345788887543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.33  E-value=0.00053  Score=66.81  Aligned_cols=81  Identities=12%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             CcEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCC-EEE
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR-FVI  513 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~  513 (635)
                      |.+.-||+.+++.+.+...... .--.++..+.++++|+.||.++.+|.++|+.+.++...............+|+ |++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            5688899999999887764332 12245668899999999999999999999999998875444333322345775 444


Q ss_pred             EEe
Q psy18018        514 TSS  516 (635)
Q Consensus       514 ~~~  516 (635)
                      ..+
T Consensus       537 v~~  539 (573)
T d1kb0a2         537 VAV  539 (573)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=0.0019  Score=62.94  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             CCcEEEEeCCCCceeeeeccCCccEE-EEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCC-EE
Q psy18018        435 DTSIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR-FV  512 (635)
Q Consensus       435 d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l  512 (635)
                      .|.+.-+|+.+++.+.+...+..... .++..+.++++|+.||.++.+|.++|+.+.++...............+|+ |+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            46789999999999887765432221 24567889999999999999999999999998875444443333446775 55


Q ss_pred             EEE
Q psy18018        513 ITS  515 (635)
Q Consensus       513 ~~~  515 (635)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.31  E-value=1.1e-05  Score=72.17  Aligned_cols=198  Identities=11%  Similarity=0.039  Sum_probs=116.2

Q ss_pred             EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce-eEEecCCCcc
Q psy18018        422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC-LQTLSGRNKH  498 (635)
Q Consensus       422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~  498 (635)
                      +.+||+.+++...+++|..++.. ++ ...+......+.++++  +++++++...++.+..++...... ...+.. ...
T Consensus        35 v~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  111 (302)
T d2p4oa1          35 SAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-LPD  111 (302)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-CTT
T ss_pred             ECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc-cCC
Confidence            45677777777777777777754 33 2333445566777776  567888888888888887653321 111111 113


Q ss_pred             cccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        499 QSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       499 ~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      ......+++  +++++++.+.++.+..++...+.............. ...........+.++. +.++++.+..+.|..
T Consensus       112 ~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~  189 (302)
T d2p4oa1         112 AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS-NSESVFPAANGLKRFG-NFLYVSNTEKMLLLR  189 (302)
T ss_dssp             CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS-STTCCSCSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             ccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee-eccCcccccccccccC-CceeeecCCCCeEEe
Confidence            345667777  588888888889999999887654332221100000 0000111233444443 455666778888998


Q ss_pred             EeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        577 WDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +++............   ........|+|++||.+.++...++.    |+.++++
T Consensus       190 ~~~~~~~~~~~~~~~---~~~~~pdgia~d~dG~l~va~~~~~~----V~~i~p~  237 (302)
T d2p4oa1         190 IPVDSTDKPGEPEIF---VEQTNIDDFAFDVEGNLYGATHIYNS----VVRIAPD  237 (302)
T ss_dssp             EEBCTTSCBCCCEEE---EESCCCSSEEEBTTCCEEEECBTTCC----EEEECTT
T ss_pred             ccccccccccccccc---cCCCCCcceEECCCCCEEEEEcCCCc----EEEECCC
Confidence            887765433322211   11223457999999998888877776    6666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.30  E-value=0.0009  Score=61.08  Aligned_cols=158  Identities=8%  Similarity=0.031  Sum_probs=89.4

Q ss_pred             EEEeeCCcEEEEEeC-CCcEEEEeCCCC-cee--eeec--cCCccEEEEEe--cCCEE-EEEeCCCcEEEEECCCCceeE
Q psy18018        420 RICLFDGVHVVSGSL-DTSIRVWEAESG-NLR--HTLM--GHQSLTSGMEL--RNNIL-VSGNADSTVKVWDIVSGQCLQ  490 (635)
Q Consensus       420 ~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~--~~~~--~~~~~v~~~~~--~~~~l-~s~~~dg~i~iwd~~~~~~~~  490 (635)
                      ..++|+|+++++++. ...|.+|+.... ...  ....  ........+.+  +++++ ++.-.+++|.+|++..+....
T Consensus       150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~  229 (365)
T d1jofa_         150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence            458999999888865 457888876543 222  1111  12345566666  45555 555568899999987654221


Q ss_pred             E-----ecC-----------CCcccccEEEEEe--cCCEEEEEeC------CCcEEEEECCCCceeeeeccceecCceeE
Q psy18018        491 T-----LSG-----------RNKHQSAVTCLQF--NSRFVITSSD------DGTVKLWDVKTGEFSTPLMSSFILNPFYF  546 (635)
Q Consensus       491 ~-----~~~-----------~~~~~~~v~~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  546 (635)
                      .     ...           ..........+.+  ||++|+++..      .+.|..|++.....+.........     
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----  304 (365)
T d1jofa_         230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-----  304 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-----
T ss_pred             EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE-----
Confidence            1     110           0011122334444  7999887743      223777777654322221110000     


Q ss_pred             EeccCceecccccC-CCeEEEEe-cCCCeEEEEeCCCC
Q psy18018        547 LIYSQPLLCPHLQF-NSRFVITS-SDDGTVKLWDVKTG  582 (635)
Q Consensus       547 ~~~~~~v~~~~~s~-~~~~l~~~-~~d~~v~iwd~~~~  582 (635)
                      .........++++| +|++|+++ ..++.|.+|++...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            01223456788998 88977666 57799999987644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=0.00062  Score=66.46  Aligned_cols=82  Identities=22%  Similarity=0.235  Sum_probs=57.2

Q ss_pred             CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCC
Q psy18018        518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSG  597 (635)
Q Consensus       518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  597 (635)
                      .|.|.-+|+.+++..-.....            .++..-.++-.+.++++|+.||.++.+|.++||.+.++. +....+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~------------~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~-~~~~~~~  531 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ-TGSGIVS  531 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES------------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE-CSSCCCS
T ss_pred             CCeEEEEcCCCCcEEeecCCC------------CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE-CCCCccc
Confidence            477888999999887766432            223333344577788889999999999999999999985 3333344


Q ss_pred             ceEEEEEeCCCCe-EEEEc
Q psy18018        598 GVVWRIRASETKL-VCAVG  615 (635)
Q Consensus       598 ~~i~~l~~s~d~~-~l~~~  615 (635)
                      .+   |.|..||+ |+++.
T Consensus       532 ~P---~ty~~~G~qYv~i~  547 (582)
T d1flga_         532 PP---ITWEQDGEQYLGVT  547 (582)
T ss_dssp             CC---EEEEETTEEEEEEE
T ss_pred             cC---EEEEECCEEEEEEE
Confidence            44   44557785 65543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.27  E-value=0.00042  Score=61.68  Aligned_cols=101  Identities=10%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceeE------EecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018        468 ILVSGNADSTVKVWDIVSGQCLQ------TLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF  539 (635)
Q Consensus       468 ~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  539 (635)
                      ++++-+..+.|..||+.....+.      .+..  ......-.+++  +|+++++....+.|.+||.+.++....+..  
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~--~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~--  265 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--  265 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--
T ss_pred             EEEEeecccceEEeeccCccccceeeEEEEccc--cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC--
Confidence            45555677888888875433222      1111  12223456777  588888777889999999887776554432  


Q ss_pred             ecCceeEEeccCceecccccCCCe-EEEEecCCCeEEEEeCCC
Q psy18018        540 ILNPFYFLIYSQPLLCPHLQFNSR-FVITSSDDGTVKLWDVKT  581 (635)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~v~iwd~~~  581 (635)
                               .....++++|.||++ +.++.+.+|.|...++..
T Consensus       266 ---------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         266 ---------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ---------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ---------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence                     134678899999996 556677788888888654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=0.00011  Score=63.61  Aligned_cols=146  Identities=9%  Similarity=0.029  Sum_probs=92.2

Q ss_pred             EEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018        462 MELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF  539 (635)
Q Consensus       462 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  539 (635)
                      +..+++++++....+.+++++-.+...+....    .......+++  +++++++-..+..+..++............  
T Consensus        64 v~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~----~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~--  137 (260)
T d1rwia_          64 VDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT--  137 (260)
T ss_dssp             ECTTCCEEEEETTTEEEEECTTCSCCEECCCC----SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC--
T ss_pred             EcCCCCEEEeeeeeceeeeeeeccceeeeeee----eeeecccccccccceeEeeccccccccccccccceeeeeeec--
Confidence            33456677776666667666655544433332    2234567777  467776666666677776654332211111  


Q ss_pred             ecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018        540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG  619 (635)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg  619 (635)
                               -......++++|+++++++...++.|..+|..........     ...-.....|++.++|.++++...++
T Consensus       138 ---------~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~p~gi~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         138 ---------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-----FTDITAPWGIAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             ---------SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-----CSSCCSEEEEEECTTCCEEEEETTTT
T ss_pred             ---------ccCCcceeeecCCCCEeeeccccccccccccccceeeeee-----ccccCCCccceeeeeeeeeeeecCCC
Confidence                     1224467889999999888888899999998765443222     13334568999999999888887777


Q ss_pred             eeEeEEEEEeee
Q psy18018        620 TEETKLLVLDFD  631 (635)
Q Consensus       620 ~~~~~l~~~d~~  631 (635)
                      .    ++.++.+
T Consensus       204 ~----i~~~~~~  211 (260)
T d1rwia_         204 Q----VVKLLAG  211 (260)
T ss_dssp             E----EEEECTT
T ss_pred             E----EEEEeCC
Confidence            6    6666544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.21  E-value=0.0011  Score=64.69  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CcEEEEeCCCCceeeeeccCCcc-EEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCC-EEE
Q psy18018        436 TSIRVWEAESGNLRHTLMGHQSL-TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR-FVI  513 (635)
Q Consensus       436 ~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~  513 (635)
                      |.+.-||+.+++.+.+....... --.++-.+.+++.|+.||.++.+|.++|+.+.++............-..+|+ |++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            57899999999987665422111 1123446888889999999999999999999998764433333333345765 455


Q ss_pred             EEe
Q psy18018        514 TSS  516 (635)
Q Consensus       514 ~~~  516 (635)
                      ...
T Consensus       533 v~~  535 (596)
T d1w6sa_         533 IYY  535 (596)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.91  E-value=0.012  Score=56.99  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=55.4

Q ss_pred             CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCc
Q psy18018        519 GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGG  598 (635)
Q Consensus       519 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  598 (635)
                      |.|.-||+.+++..-....            ..+..+-.++-.+.+++.|+.||.++.+|.++|+.+.++.. .......
T Consensus       453 G~l~A~D~~TG~~~W~~~~------------~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~-~~~~~a~  519 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME------------RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI-PSGAIGY  519 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE------------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSC
T ss_pred             ceEEEEeCCCCceecccCC------------CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC-CCCcccC
Confidence            6788999999987765432            22223333444677888899999999999999999999853 2234455


Q ss_pred             eEEEEEeCCCCe-EEEEc
Q psy18018        599 VVWRIRASETKL-VCAVG  615 (635)
Q Consensus       599 ~i~~l~~s~d~~-~l~~~  615 (635)
                      +++-   .-||+ |+++.
T Consensus       520 P~tY---~~dGkQYvav~  534 (596)
T d1w6sa_         520 PMTY---THKGTQYVAIY  534 (596)
T ss_dssp             CEEE---EETTEEEEEEE
T ss_pred             CeEE---EECCEEEEEEE
Confidence            5544   34665 66643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.88  E-value=0.0041  Score=55.23  Aligned_cols=191  Identities=9%  Similarity=0.065  Sum_probs=102.2

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeC----CCcEEEEECCCCceeEEecCCCc
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNA----DSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      ++|+..++-..++.|..|+..+++....+........++++  +++++++...    .+.+...+............. .
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~  127 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-S  127 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-S
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCC-C
Confidence            34443444445666777777666555555545555667776  4566665433    233555555554443333221 1


Q ss_pred             ccccEEEEEe--cCCEEEEEeCC------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE-EEe
Q psy18018        498 HQSAVTCLQF--NSRFVITSSDD------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV-ITS  568 (635)
Q Consensus       498 ~~~~v~~~~~--~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~  568 (635)
                      .......+.+  +|++.++....      +.+..++..... +..+..           .-...+.++|+||++.| ++-
T Consensus       128 ~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~-----------~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         128 TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQ-----------NISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEE-----------EESSEEEEEECTTSSEEEEEE
T ss_pred             cccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEee-----------ccceeeeeeeccccceEEEec
Confidence            2234555666  56655553221      223333333222 111111           12234679999999865 445


Q ss_pred             cCCCeEEEEeCCCC-ceEEeeee--ccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018        569 SDDGTVKLWDVKTG-EFIRNLVS--LDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD  631 (635)
Q Consensus       569 ~~d~~v~iwd~~~~-~~~~~~~~--~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~  631 (635)
                      +..+.|..||+... ........  ............|++.++|.+.++...++.    |+.+|.+
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~----V~~~~p~  257 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR----VLVFNKR  257 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE----EEEECTT
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE----EEEECCC
Confidence            66789999998642 22211110  000122234678999999998888777776    6777643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.84  E-value=0.0079  Score=52.54  Aligned_cols=143  Identities=7%  Similarity=0.006  Sum_probs=81.1

Q ss_pred             EEEEEe--cCCEEEEEeC----CCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCC-EEEEEeCCCcEEEEECCCC
Q psy18018        459 TSGMEL--RNNILVSGNA----DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSR-FVITSSDDGTVKLWDVKTG  529 (635)
Q Consensus       459 v~~~~~--~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~vwd~~~~  529 (635)
                      .+.+..  ++++.++...    .+.-.+|.+..++.......    ......+++  +++ ++++-+..+.|..|++...
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~----~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE----ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec----cCCcceeeecCCCceEEEeecccceeeEeeeccc
Confidence            444444  3444444322    23445666666654444432    223455666  455 4556666788999987532


Q ss_pred             ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC-CC
Q psy18018        530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS-ET  608 (635)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~d  608 (635)
                      .....-......   ...........+++..+|++.++.-..+.|..|| .+|+.+..+.     -....+++++|- +|
T Consensus       181 ~~~~~~~~~~~~---~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~-----lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         181 TGLPTGKAEVFI---DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE-----VPGKQTTCPAFIGPD  251 (295)
T ss_dssp             TCCBSSCCEEEE---ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE-----CSCSBEEEEEEESTT
T ss_pred             ccccccceEEEe---ccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec-----CCCCceEEEEEeCCC
Confidence            211100000000   0000123456788899999888777788999999 5788888884     233468999995 67


Q ss_pred             CeEEEE
Q psy18018        609 KLVCAV  614 (635)
Q Consensus       609 ~~~l~~  614 (635)
                      .+.|.+
T Consensus       252 ~~~Lyv  257 (295)
T d2ghsa1         252 ASRLLV  257 (295)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            665544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00014  Score=68.95  Aligned_cols=131  Identities=13%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             EeCCCcEEEEECCCCceeEEecCCCcccccE--EEEEecCCEEEEEe---------CCCcEEEEECCCCceeeeecccee
Q psy18018        472 GNADSTVKVWDIVSGQCLQTLSGRNKHQSAV--TCLQFNSRFVITSS---------DDGTVKLWDVKTGEFSTPLMSSFI  540 (635)
Q Consensus       472 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~  540 (635)
                      -..+|.|.+||+.+++....+.........+  ..++.|+++++...         ..+.+.++|+.++.........  
T Consensus        33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~--  110 (465)
T d1xfda1          33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE--  110 (465)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT--
T ss_pred             EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc--
Confidence            3457788999988776544443322122223  34555888877764         3567899999988754322111  


Q ss_pred             cCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCce-----------------EEEE
Q psy18018        541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGV-----------------VWRI  603 (635)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----------------i~~l  603 (635)
                             .....+....|||||+.||-.. ++.|.+.+..+++.++...    .+..+.                 -.++
T Consensus       111 -------~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~----~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         111 -------VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS----TGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             -------CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC----CCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             -------CCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEec----ccCcceeeccccchhhhhhhccccceE
Confidence                   0123456688999999998876 6679999988877665442    122111                 2478


Q ss_pred             EeCCCCeEEEEcc
Q psy18018        604 RASETKLVCAVGS  616 (635)
Q Consensus       604 ~~s~d~~~l~~~~  616 (635)
                      .|||||++||...
T Consensus       179 ~WSPDgk~iaf~~  191 (465)
T d1xfda1         179 WWSPDGTRLAYAA  191 (465)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCeEEEEE
Confidence            8999999999864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.0024  Score=60.21  Aligned_cols=60  Identities=10%  Similarity=-0.055  Sum_probs=37.0

Q ss_pred             eecccccCCCeEEEEecC----CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEE
Q psy18018        553 LLCPHLQFNSRFVITSSD----DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVC  612 (635)
Q Consensus       553 v~~~~~s~~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  612 (635)
                      +..+.|+|++++++....    ...+.++|..+|+....+......-....-....|+|||+.+
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            456789999997776432    236889999999876555322111001112345789999844

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.58  E-value=0.013  Score=53.56  Aligned_cols=261  Identities=12%  Similarity=0.063  Sum_probs=133.2

Q ss_pred             EEecCcEEEEecCC-----C------eEEEEEccCCceEE--ee-eCCCcceeEEEE--eCCEEEEEeCC-CcEEEEEcc
Q psy18018        349 FQFDGVHVVSGSLD-----T------SIRVWEAESGNLRH--TL-MGHQSLTSGMEL--RNNILVSGNAD-STVKVWDIV  411 (635)
Q Consensus       349 ~s~~~~~l~~~~~d-----g------~i~v~~~~~~~~~~--~~-~~~~~~v~~l~~--~~~~l~s~~~d-g~i~iwd~~  411 (635)
                      ...+|+.++.|+.+     +      .+.+||..+++-..  .. ..+.....+.++  ++.+++.++.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            34478888877742     1      36789998775322  11 223222233343  36677777655 589999987


Q ss_pred             CCcceeE----------EEEEeeCCcEEEEEeCC------CcEEEEeCCCCceeeeec---------cCC-------ccE
Q psy18018        412 SGTKKLM----------FRICLFDGVHVVSGSLD------TSIRVWEAESGNLRHTLM---------GHQ-------SLT  459 (635)
Q Consensus       412 ~~~~~~~----------~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---------~~~-------~~v  459 (635)
                      +......          .....+|++.++.|+.+      ..+.+||..+.+-...-.         .+.       ...
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW  186 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence            7643221          22345688888888753      368899988764322110         000       111


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--------ccccEEEEEecCCEEEEEeCCC--------cEEE
Q psy18018        460 SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--------HQSAVTCLQFNSRFVITSSDDG--------TVKL  523 (635)
Q Consensus       460 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~l~~~~~d~--------~i~v  523 (635)
                      .....+++.++.++.++.+.+++..+............        ....+.....+++.++.|+...        ...+
T Consensus       187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~  266 (387)
T d1k3ia3         187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI  266 (387)
T ss_dssp             EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred             EEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeec
Confidence            11223567777777777788888776543322111000        0011111112577777776421        2333


Q ss_pred             EECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----------CeEEEEeCCCCceEEeeeecc
Q psy18018        524 WDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----------GTVKLWDVKTGEFIRNLVSLD  592 (635)
Q Consensus       524 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~v~iwd~~~~~~~~~~~~~~  592 (635)
                      .++............  ..   .+.....-.+....+|++++++|+.+           .++.+||.++.+.... ....
T Consensus       267 ~~~~~~~~~~~~~~~--~~---~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~~~  340 (387)
T d1k3ia3         267 ITLGEPGTSPNTVFA--SN---GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NPNS  340 (387)
T ss_dssp             EECCSTTSCCEEEEC--TT---CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CCCS
T ss_pred             ccccccccCCCceee--cc---ccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CCCC
Confidence            333322111000000  00   00011122234556799999998853           1578999988765322 1111


Q ss_pred             CCCCCceEEEEEeCCCCeEEEEccC
Q psy18018        593 SGGSGGVVWRIRASETKLVCAVGSR  617 (635)
Q Consensus       593 ~~~~~~~i~~l~~s~d~~~l~~~~~  617 (635)
                      . +... -....+.+||++|+.|+.
T Consensus       341 ~-~R~~-Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         341 I-VRVY-HSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             S-CCCT-TEEEEECTTSCEEEEECC
T ss_pred             C-cccc-eEEEEECCCCEEEEEeCC
Confidence            1 1111 112345799999999884

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.55  E-value=0.021  Score=49.30  Aligned_cols=216  Identities=13%  Similarity=0.115  Sum_probs=111.3

Q ss_pred             EEec--CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe-CCC-----cEEEEEccCCcceeE
Q psy18018        349 FQFD--GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN-ADS-----TVKVWDIVSGTKKLM  418 (635)
Q Consensus       349 ~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~-~dg-----~i~iwd~~~~~~~~~  418 (635)
                      ++|+  |++++-.+ +|.|.+.|+.+++.. .+..+...+...+|+  ++.|+... .++     .+.+++..+++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            7898  99887654 467999999987764 556666778888887  56666443 222     366666666543322


Q ss_pred             ---------------EEEEeeCCcEEEEEeCC------CcEEEEeCCCCceeeeeccCCccEEEEEecCCE-EEEEeCCC
Q psy18018        419 ---------------FRICLFDGVHVVSGSLD------TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-LVSGNADS  476 (635)
Q Consensus       419 ---------------~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-l~s~~~dg  476 (635)
                                     ...++|+|+.++.....      ..+...+...+.......+..  ......++.. ++....+.
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  161 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA--THILFADGRRVIGRNTFEL  161 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC--SEEEEETTEEEEEESCSCC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCcc--ceeeecCCCeEEEeecccc
Confidence                           22477888888775432      224444544443322211111  1112222222 22211111


Q ss_pred             -----------cEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEe-CC--CcEEEEECCCCceeeeeccceecC
Q psy18018        477 -----------TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS-DD--GTVKLWDVKTGEFSTPLMSSFILN  542 (635)
Q Consensus       477 -----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d--~~i~vwd~~~~~~~~~~~~~~~~~  542 (635)
                                 .................    .........+.+..++... .+  ..|.++|+.+++... +..     
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~-----  231 (281)
T d1k32a2         162 PHWKGYRGGTRGKIWIEVNSGAFKKIVD----MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTS-----  231 (281)
T ss_dssp             TTSTTCCSTTCCEEEEEEETTEEEEEEC----CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCC-----
T ss_pred             ceeeeeccCCcceeeeeccccceeeccC----CccccceeeeeccccceecccccccceEEEeCCCCceEE-eec-----
Confidence                       11111211222222221    1222233334444444333 32  357777887665432 211     


Q ss_pred             ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEE
Q psy18018        543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR  586 (635)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~  586 (635)
                             ........|||||+.|+.. .++.|+++|+.+++...
T Consensus       232 -------~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         232 -------FTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             -------CCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             -------CCCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence                   1111223589999988764 46789999999887543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.54  E-value=0.026  Score=50.29  Aligned_cols=266  Identities=9%  Similarity=0.006  Sum_probs=146.9

Q ss_pred             EEEEecCCCeEEEEEccCCceEEeeeCCCcce-eEEEEeC---------------CEEEEEeCCCcEEEEEccCCcceeE
Q psy18018        355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-SGMELRN---------------NILVSGNADSTVKVWDIVSGTKKLM  418 (635)
Q Consensus       355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-~~l~~~~---------------~~l~s~~~dg~i~iwd~~~~~~~~~  418 (635)
                      .+.+|+..|.|+++-+.+++.+..+.-.+... +.--++.               .+|..  ..+.+..| -.+..+...
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~-GD~HHP~~S   91 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN-GDLHHVHMS   91 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC----------------CCC-CCBCCEEEE
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhc--cCcccccC-CCcCCCccc
Confidence            47789999999999999999998887655421 0000110               01111  11111111 011111111


Q ss_pred             EEEEeeCCcEEEEEe-CCCcEEEEeCCCCceeeeecc-CCccEEEEEe--c--CCEEEEEeCCC----------------
Q psy18018        419 FRICLFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMG-HQSLTSGMEL--R--NNILVSGNADS----------------  476 (635)
Q Consensus       419 ~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~--~--~~~l~s~~~dg----------------  476 (635)
                      ..--.+||+++.+.. .+.+|.+.|+++.+..+.+.. .......+.+  .  -.+++.++.+.                
T Consensus        92 ~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y  171 (459)
T d1fwxa2          92 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  171 (459)
T ss_dssp             EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred             ccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence            111245889988877 678999999999887665443 2334455554  2  34777766632                


Q ss_pred             --cEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC---------------cEEEEECCCC-------c--
Q psy18018        477 --TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---------------TVKLWDVKTG-------E--  530 (635)
Q Consensus       477 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---------------~i~vwd~~~~-------~--  530 (635)
                        .+...|..+.+...++...  ..-.-.....+|+++++.+.+.               .+.+++....       +  
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             ceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence              2567888888877766542  1122344555889888876432               2444443210       0  


Q ss_pred             e---eeeeccce--ecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCceE-------EeeeeccCCCCC
Q psy18018        531 F---STPLMSSF--ILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEFI-------RNLVSLDSGGSG  597 (635)
Q Consensus       531 ~---~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~~-------~~~~~~~~~~~~  597 (635)
                      .   ...+....  ......++.-......+.++|||+++++++ .+.++.|+|+++-..+       +...... ....
T Consensus       250 eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e-~elg  328 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-PELG  328 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC-CBCC
T ss_pred             EeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee-cccC
Confidence            0   00111100  011222334444566789999999988765 6889999999642111       0000000 1234


Q ss_pred             ceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018        598 GVVWRIRASETKLVCAVGSRNGTEETKLLVLDF  630 (635)
Q Consensus       598 ~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~  630 (635)
                      -.-..-+|+.+|....+..-|..    +..|++
T Consensus       329 lgPLht~fd~~g~aytslfids~----v~kw~~  357 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQ----VVKWNI  357 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTE----EEEEEH
T ss_pred             cCccccccCCCceEEEEeeccce----EEEEec
Confidence            45667789999987777777776    555554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.53  E-value=0.023  Score=49.41  Aligned_cols=213  Identities=9%  Similarity=-0.032  Sum_probs=117.4

Q ss_pred             EEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeecc--c
Q psy18018        104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAEL--Q  180 (635)
Q Consensus       104 ~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~  180 (635)
                      -+||.+.++ +..+--..+.|..||.++++.. .+ .....+.++++ +...|+.++.+ .+.++|..+++...-..  .
T Consensus        23 p~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          23 PTFDPASGT-AWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred             CeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeec
Confidence            457766555 3444455677888888877643 22 22456788888 33444445555 58899999886433211  1


Q ss_pred             c--ceeEEeeeccCCCEEEEEeC-----CCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CC-EEEEeeCceeEEEecc
Q psy18018        181 E--TEVELSHGYALRSRIVSGSD-----DNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GN-IIISGSTDRTLKGWSN  250 (635)
Q Consensus       181 ~--~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~  250 (635)
                      .  ..........+++.+..++.     .+.-.+|.+..++....... -.....+.++  ++ .+++-+..+.|..+++
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeee
Confidence            1  11222233334444554432     23445666666655444432 2334566664  44 4455566777877765


Q ss_pred             cceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhh
Q psy18018        251 AERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL  330 (635)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (635)
                      .........         ..                      .. ..                                 
T Consensus       178 d~~~~~~~~---------~~----------------------~~-~~---------------------------------  192 (295)
T d2ghsa1         178 DARTGLPTG---------KA----------------------EV-FI---------------------------------  192 (295)
T ss_dssp             CTTTCCBSS---------CC----------------------EE-EE---------------------------------
T ss_pred             ccccccccc---------ce----------------------EE-Ee---------------------------------
Confidence            432110000         00                      00 00                                 


Q ss_pred             hhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe
Q psy18018        331 EAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR  392 (635)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~  392 (635)
                           ........+..+++..+|++.++.-..+.|..||. .++.+..+......+++++|.
T Consensus       193 -----~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         193 -----DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             -----ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             -----ccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence                 00001112334567778887777667788999995 588888888777788999996

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.52  E-value=0.011  Score=52.87  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE----------EEEE-eCCCcEEEEeCCCCceeeee-ccCCccEEEE
Q psy18018        395 ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH----------VVSG-SLDTSIRVWEAESGNLRHTL-MGHQSLTSGM  462 (635)
Q Consensus       395 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------l~~~-~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~  462 (635)
                      .+.+|+..|.++++-+.+.+....+.+|+++.-.          ++.. ....+-.+...+ +...... ..|-   ..+
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~-g~~~~~~GD~HH---P~~   90 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAAN-GKRIHDNGDLHH---VHM   90 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC---------------CCCCCBCC---EEE
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhcc-CcccccCCCcCC---Ccc
Confidence            4667888899999999888888888877664210          0000 000000000000 0000000 0111   134


Q ss_pred             Ee-----cCCEEEEEe-CCCcEEEEECCCCceeEEecCCCcccccEEEEEe----cCCEEEEEeCCC-------------
Q psy18018        463 EL-----RNNILVSGN-ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDG-------------  519 (635)
Q Consensus       463 ~~-----~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~-------------  519 (635)
                      ++     +|+++++.. .+.+|.+.|+++.+..+.+..+  ....+..+..    +..|++.++.+.             
T Consensus        91 S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          91 SFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC--CCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            43     577666655 6789999999999986655432  2233444443    356777766532             


Q ss_pred             -----cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        520 -----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       520 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                           .+.+.|..+.+...++..            ......++++|||+++++.+.+
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V------------~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV------------SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE------------SSCCCCEEECSSSSEEEEEESC
T ss_pred             hhcceEEEEEecCCceEEEEeee------------CCChhccccCCCCCEEEEEecc
Confidence                 256788887776555443            4456678999999999987644

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.04  Score=46.28  Aligned_cols=234  Identities=13%  Similarity=0.170  Sum_probs=126.7

Q ss_pred             EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEE-eCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018        349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV  427 (635)
Q Consensus       349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  427 (635)
                      .+|..+.++.-+ ...+.+||+++.+.++.+.-.+ .|.-..| +++.|+..+. ..|.-|+++....            
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~------------  134 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQ------------  134 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEECS-SEEEEEESSSSCC------------
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEcC-CceEEEcccCCCC------------
Confidence            566666666655 5589999999999988887655 5555555 4666665544 3588888754221            


Q ss_pred             EEEEEeCCCcEEEEeCCC---Cceeeeecc--CCc--cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccc
Q psy18018        428 HVVSGSLDTSIRVWEAES---GNLRHTLMG--HQS--LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS  500 (635)
Q Consensus       428 ~l~~~~~d~~i~~~d~~~---~~~~~~~~~--~~~--~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  500 (635)
                               -.+++|...   +..+--+..  ...  .+.+++..++.+     .|.+.+|..+. +..+.+.+   |..
T Consensus       135 ---------P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i-----~G~mQLYS~er-~~sQ~ieG---haa  196 (327)
T d1utca2         135 ---------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV-----VGAMQLYSVDR-KVSQPIEG---HAA  196 (327)
T ss_dssp             ---------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEE-----EEEEEEEETTT-TEEEEECC---SEE
T ss_pred             ---------chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCce-----eEEEEEEEecc-CcCccccc---eee
Confidence                     122333221   000000000  011  122333333332     26788999874 34555665   544


Q ss_pred             cEEEEEecC-----CEEEEE---eCCCcEEEEECCCCce-eeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018        501 AVTCLQFNS-----RFVITS---SDDGTVKLWDVKTGEF-STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD  571 (635)
Q Consensus       501 ~v~~~~~~~-----~~l~~~---~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  571 (635)
                      .-..+..+|     ..++.+   ...+.+++-++..... ...+......-......-.+--.++.+|+.-.++..-+.-
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~  276 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  276 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecC
Confidence            433343322     122222   2236788888876321 1221111000000000112334567788888888889999


Q ss_pred             CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018        572 GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT  620 (635)
Q Consensus       572 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~  620 (635)
                      |.+.+||++++.++..-+     -..++|..-+-..+..=+++....|.
T Consensus       277 G~i~lyDleTgt~i~~nR-----Is~~~iF~~a~~~~~~Gi~~VNr~Gq  320 (327)
T d1utca2         277 GYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQ  320 (327)
T ss_dssp             SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSE
T ss_pred             cEEEEEEcccccEEEEee-----cCCCceEEeccCCCCceEEEECCCCe
Confidence            999999999999987763     34556665555554433444446776

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=0.053  Score=45.58  Aligned_cols=248  Identities=11%  Similarity=0.056  Sum_probs=131.0

Q ss_pred             CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe-eCCEEEE
Q psy18018        160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM-AGNIIIS  238 (635)
Q Consensus       160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s  238 (635)
                      ...+|.|-|+.++....+......  .+...|....++.-+ ...+.++|+++.+.++.+.-.. +|.--.| +.+.|+-
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~Ad--sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~l  118 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL  118 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECCCS--EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEE
T ss_pred             CCceEEEEECCCCCcceecccchh--hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEE
Confidence            345788889887654333222222  222234444444444 6789999999999999887555 4444445 5666555


Q ss_pred             eeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEe
Q psy18018        239 GSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFL  318 (635)
Q Consensus       239 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (635)
                      .. +..|.-|+++..... .++.+..             +.        + ....+.....+++.+++            
T Consensus       119 VT-~taVYHW~~~g~s~P-~k~fdR~-------------~~--------L-~~~QIInY~~d~~~kW~------------  162 (327)
T d1utca2         119 VT-DNAVYHWSMEGESQP-VKMFDRH-------------SS--------L-AGCQIINYRTDAKQKWL------------  162 (327)
T ss_dssp             EC-SSEEEEEESSSSCCC-EEEEECC-------------GG--------G-TTCEEEEEEECTTSCEE------------
T ss_pred             Ec-CCceEEEcccCCCCc-hhhhhhc-------------cc--------c-cCceEEEEEECCCCCEE------------
Confidence            54 456999998542110 0000000             00        0 00111111111111111            


Q ss_pred             ecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC----
Q psy18018        319 AEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN----  394 (635)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~----  394 (635)
                                                ..+.+++....+     .|.+.+|..+ .+.-+.+.+|...-..+..+++    
T Consensus       163 --------------------------~l~GI~~~~~~i-----~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~  210 (327)
T d1utca2         163 --------------------------LLTGISAQQNRV-----VGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEES  210 (327)
T ss_dssp             --------------------------EEEEEEEETTEE-----EEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCE
T ss_pred             --------------------------EEEeEecCCCce-----eEEEEEEEec-cCcCccccceeeeeEEEEcCCCCCCc
Confidence                                      112233322322     2789999987 4555677777655444444321    


Q ss_pred             -EEEEE---eCCCcEEEEEccCCcc------eeEEEE---------------EeeCCcEEEEEeCCCcEEEEeCCCCcee
Q psy18018        395 -ILVSG---NADSTVKVWDIVSGTK------KLMFRI---------------CLFDGVHVVSGSLDTSIRVWEAESGNLR  449 (635)
Q Consensus       395 -~l~s~---~~dg~i~iwd~~~~~~------~~~~~~---------------~~~~~~~l~~~~~d~~i~~~d~~~~~~~  449 (635)
                       .++.+   ...+++.+.++.....      .....+               .++.-..+..-+.-|.+++||++++.++
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence             22222   2336788888765321      111111               3445567888889999999999999988


Q ss_pred             eeeccCCccEEEEEec--CCEEEEEeCCCcEE
Q psy18018        450 HTLMGHQSLTSGMELR--NNILVSGNADSTVK  479 (635)
Q Consensus       450 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  479 (635)
                      ..-+-....|..-+.+  ..-++....+|.|.
T Consensus       291 ~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         291 YMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            7766555555533332  23455555666554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.59  E-value=0.095  Score=47.54  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=64.2

Q ss_pred             EEeeCCcEEEEEeCC-CcEEEEeCCCCceeeee--ccCCc-cEEEEEecCCEEEEEeCC------CcEEEEECCCCceeE
Q psy18018        421 ICLFDGVHVVSGSLD-TSIRVWEAESGNLRHTL--MGHQS-LTSGMELRNNILVSGNAD------STVKVWDIVSGQCLQ  490 (635)
Q Consensus       421 ~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~--~~~~~-~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~  490 (635)
                      .+.++++.++.|+.+ ..+.+||..+..-...-  ..... .-.++..++++++.++.+      ..+.+||..+.+-..
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence            355788888888655 58999999876543221  11111 222333478888888753      358999988765322


Q ss_pred             EecCC-Cc------c-------cccEEEEEecCCEEEEEeCCCcEEEEECCCCcee
Q psy18018        491 TLSGR-NK------H-------QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFS  532 (635)
Q Consensus       491 ~~~~~-~~------~-------~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  532 (635)
                       +... ..      +       .......-.+++.++.+..++.+.+++..+....
T Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         162 -LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             -ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             -cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence             1110 00      0       0111112226777887877777888887766543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.55  E-value=0.25  Score=43.21  Aligned_cols=148  Identities=11%  Similarity=0.251  Sum_probs=88.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE------ecCC--EEEEEeC--C--CcEEEEECCCC-ceee
Q psy18018        467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ------FNSR--FVITSSD--D--GTVKLWDVKTG-EFST  533 (635)
Q Consensus       467 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------~~~~--~l~~~~~--d--~~i~vwd~~~~-~~~~  533 (635)
                      .+++.....+-+++||+. |+.+..+..     +.+..+.      .+++  -++.++.  +  .+|.+|.+... ..+.
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYHT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECCS-----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEeccc-----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            477777777779999985 777777653     2333332      2322  3455552  2  35778877532 2222


Q ss_pred             eeccceecCceeEEeccCceecccc--cCC-Ce-EEEEecCCCeEEEEeCC---CC----ceEEeeeeccCCCCCceEEE
Q psy18018        534 PLMSSFILNPFYFLIYSQPLLCPHL--QFN-SR-FVITSSDDGTVKLWDVK---TG----EFIRNLVSLDSGGSGGVVWR  602 (635)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~v~~~~~--s~~-~~-~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~~~~~~~i~~  602 (635)
                      .+...  ..+  .......+..+|+  +|. +. ++++...+|.+..|.+.   .+    +.++.+      .....+..
T Consensus       115 ~~~~~--~~p--~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f------~~~~q~EG  184 (353)
T d1h6la_         115 SITDP--NRP--IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF------KMNSQTEG  184 (353)
T ss_dssp             ECSCS--SSC--EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE------ECSSCEEE
T ss_pred             ccccc--ccc--cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc------CCCCccce
Confidence            22111  001  1111234667777  664 44 66777889999988773   23    333344      23457889


Q ss_pred             EEeCCCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018        603 IRASETKLVCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       603 l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                      +++.++...|..+-++.-    +|.++.+++.
T Consensus       185 CVvDde~~~LyisEE~~G----iw~~~a~~~~  212 (353)
T d1h6la_         185 MAADDEYGSLYIAEEDEA----IWKFSAEPDG  212 (353)
T ss_dssp             EEEETTTTEEEEEETTTE----EEEEESSTTS
T ss_pred             EEEeCCCCcEEEecCccc----eEEEEeccCC
Confidence            999999999999988764    7888877653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.79  Score=40.48  Aligned_cols=143  Identities=8%  Similarity=-0.048  Sum_probs=90.0

Q ss_pred             cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018        458 LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMS  537 (635)
Q Consensus       458 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  537 (635)
                      .|..++++++.++... ++.+..++...-........   ...++..+.++...++....++.+.++++..++...... 
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~-  162 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTS---FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQ-  162 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEE---CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeecccccccccc---ccccccceecCCceeEEEecCCCEEEEEeccCccccccC-
Confidence            5778889888776664 45577787766443333332   345678888888888888899999999999886432221 


Q ss_pred             ceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE-eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018        538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW-DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS  616 (635)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw-d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~  616 (635)
                           .......+..+.+++|++.|..++++..++ ..+- ++.....   +.  .+......+.++.|-.+..++++-+
T Consensus       163 -----~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~---~~--~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         163 -----NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSE---LE--ELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             -----SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHH---HH--TSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             -----CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccc---cC--CCcCCCcceeEEEEecCceEEEEEC
Confidence                 122334467788889998888888764332 2111 1111111   10  0112345788999998888887653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.5  Score=40.29  Aligned_cols=180  Identities=10%  Similarity=0.095  Sum_probs=86.5

Q ss_pred             cEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeCCCc-----EEEEECCCCceeEEecCCCcccccEEEEEecC
Q psy18018        437 SIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNADST-----VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS  509 (635)
Q Consensus       437 ~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  509 (635)
                      .+.+||..+.+....  +......-.+...++.+++.++.++.     ...++..+...... ...............++
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~  149 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVLNR  149 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETT
T ss_pred             hhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccc-cccccccccceeeeeee
Confidence            466777665433221  11111122334446666666554433     44566665543222 21111222233344466


Q ss_pred             CEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----CeEEEEeC
Q psy18018        510 RFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GTVKLWDV  579 (635)
Q Consensus       510 ~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd~  579 (635)
                      ..++.|+.+     ..+..||..+.+.........          ... ...+...++++++.|+.+     .....+|.
T Consensus       150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~  218 (288)
T d1zgka1         150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT----------IRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDV  218 (288)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS----------CCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             cceEecCcccccccceEEEeecccccccccccccc----------ccc-cccccceeeeEEEecCccccccccceeeeee
Confidence            666666653     457888887665432211100          000 011112256666766544     35678888


Q ss_pred             CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeE-eEEEEEeeecC
Q psy18018        580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEE-TKLLVLDFDVD  633 (635)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~-~~l~~~d~~~~  633 (635)
                      .+.+....- ... .. .... +++. .++++++.|+.++... -.+|+||++.+
T Consensus       219 ~~~~~~~~~-~~p-~~-r~~~-~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         219 ETETWTFVA-PMK-HR-RSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTTEEEECC-CCS-SC-CBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             cceeeeccc-Ccc-Cc-ccce-EEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            877654322 111 11 1111 2222 3688888887666432 34789998765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.34  E-value=1.2  Score=37.31  Aligned_cols=68  Identities=9%  Similarity=-0.009  Sum_probs=42.0

Q ss_pred             Eec--CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC-C-----CcEEEEECCCCeEEE
Q psy18018        149 QYD--GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD-D-----NTLKVWSATTGKCLR  217 (635)
Q Consensus       149 ~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~~~~  217 (635)
                      +.|  |+++|-.+ +|.|.+.|+.+++...-.............+++.+|+.... +     ..|.+++..+++..+
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            345  88877664 46688889998876543333344444455666777775432 2     247777877776654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.03  E-value=1.4  Score=36.76  Aligned_cols=186  Identities=11%  Similarity=0.081  Sum_probs=108.5

Q ss_pred             EEEEecCcEEEEe-cCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEccCCcceeEE---
Q psy18018        347 FGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIVSGTKKLMF---  419 (635)
Q Consensus       347 ~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~---  419 (635)
                      +++.+..+++.-. ..++.|+..++..+.....+......+.+++++  ++.|. +-...+.|...++.........   
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~  120 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG  120 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc
Confidence            5566656655544 456788888887665555554444567888887  55554 4456678888888765432221   


Q ss_pred             ------EEEeeCCcEEEEEeCC---CcEEEEeCCCCceeeeeccCCccEEEEEec--CCEE-EEEeCCCcEEEEECCCCc
Q psy18018        420 ------RICLFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL-VSGNADSTVKVWDIVSGQ  487 (635)
Q Consensus       420 ------~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~  487 (635)
                            ....|...++......   ..|.-.++............-....+++++  .+.| .+-...+.|...++....
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence                  1244555555444322   234444554333332232233455677775  4555 444567889999987554


Q ss_pred             eeEEecCCCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCceeeeec
Q psy18018        488 CLQTLSGRNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGEFSTPLM  536 (635)
Q Consensus       488 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~  536 (635)
                      ....+.+   .. ....++.++.+|+... ..+.|...|..+++....+.
T Consensus       201 ~~~v~~~---~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         201 RRKVLEG---LQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEEEEC---CC-SEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             eEEEECC---CC-CcEEEEEECCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            4333433   12 2356777666665554 66889999998887665554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.50  E-value=1.7  Score=36.14  Aligned_cols=211  Identities=10%  Similarity=0.021  Sum_probs=112.1

Q ss_pred             CeEEEEEccCCc-----eEEeeeCCCcceeEEEEe--CCEEEEE-eCCCcEEEEEccCCcceeEEE---------EEeeC
Q psy18018        363 TSIRVWEAESGN-----LRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWDIVSGTKKLMFR---------ICLFD  425 (635)
Q Consensus       363 g~i~v~~~~~~~-----~~~~~~~~~~~v~~l~~~--~~~l~s~-~~dg~i~iwd~~~~~~~~~~~---------~~~~~  425 (635)
                      +.|+-.+++...     ....+..+...+.+++++  .+.++-. ..++.|...++..........         .+..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            456666665332     112233344456778886  4444444 456778777776554332221         12333


Q ss_pred             CcEEE-EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--CEEE-EEeCCCc--EEEEECCCCceeEEecCCCccc
Q psy18018        426 GVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILV-SGNADST--VKVWDIVSGQCLQTLSGRNKHQ  499 (635)
Q Consensus       426 ~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~  499 (635)
                      +..|. +-...+.|.+.++........+........+++.++  .++. +-...+.  |.--++...........   ..
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---~~  166 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---NL  166 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---TC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---cc
Confidence            44444 444567888888875543333333334566777753  3443 3222223  44445543332222222   23


Q ss_pred             ccEEEEEec--CCEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        500 SAVTCLQFN--SRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       500 ~~v~~~~~~--~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      .....+++|  ++.|+.+ ...+.|...++........+..            ......+++. ++.+..+-...+.|..
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~------------~~~P~~lav~-~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------LQYPFAVTSY-GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------------CCSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC------------CCCcEEEEEE-CCEEEEEECCCCEEEE
Confidence            345677775  5555444 5677888888875443222211            1112345554 4555555557788999


Q ss_pred             EeCCCCceEEeee
Q psy18018        577 WDVKTGEFIRNLV  589 (635)
Q Consensus       577 wd~~~~~~~~~~~  589 (635)
                      .|..+++.+..+.
T Consensus       234 ~~~~~g~~~~~~~  246 (263)
T d1npea_         234 MDLAISKEMDTFH  246 (263)
T ss_dssp             EETTTTEEEEEEC
T ss_pred             EECCCCccceEEC
Confidence            9999998876663

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=2.4  Score=37.33  Aligned_cols=141  Identities=12%  Similarity=0.016  Sum_probs=80.2

Q ss_pred             CCCceEEEEecCcEEEEecCCCeEEEEEccCC---------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccC
Q psy18018        342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG---------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS  412 (635)
Q Consensus       342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~  412 (635)
                      .....++++....++++|+.++ +.+..+..-         ......+..-..|..++++++.++...            
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~l~v~~------------  103 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQVLVST------------  103 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTEEEEEE------------
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCEEEEEe------------
Confidence            3445678888888888888775 566664311         000001111124555666555443332            


Q ss_pred             CcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018        413 GTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTL  492 (635)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  492 (635)
                                            ++.+..++...-........-..++..+.+.+..++....++.+.++++.+++.....
T Consensus       104 ----------------------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_         104 ----------------------RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             ----------------------SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----------------------CCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCcccccc
Confidence                                  2234444444333223333334567778888888888999999999999987644332


Q ss_pred             cCCCcccccEEEEEecCCEEEEEeCCCcEEEE
Q psy18018        493 SGRNKHQSAVTCLQFNSRFVITSSDDGTVKLW  524 (635)
Q Consensus       493 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vw  524 (635)
                             ..+.++++.++..+.+-.+|..+++
T Consensus       162 -------~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         162 -------QNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             -------ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             -------CCcceEEecCCceEEEEeCCcEEEE
Confidence                   2355666665555555556555554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.71  E-value=2.8  Score=36.38  Aligned_cols=145  Identities=9%  Similarity=-0.023  Sum_probs=75.8

Q ss_pred             CCcEEEEECCCCceeE-Ee--cC--CCcccccEEEEEe----cCC-EEEEEe---CCCcEEEEECCCCceeeeeccceec
Q psy18018        475 DSTVKVWDIVSGQCLQ-TL--SG--RNKHQSAVTCLQF----NSR-FVITSS---DDGTVKLWDVKTGEFSTPLMSSFIL  541 (635)
Q Consensus       475 dg~i~iwd~~~~~~~~-~~--~~--~~~~~~~v~~~~~----~~~-~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~  541 (635)
                      .|.|.++|+++.+... .+  .+  .....-....+..    +++ +|++..   ...+|.+|++...............
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4889999987654322 11  11  0001111223332    344 455543   3567888887644322111111000


Q ss_pred             CceeEEeccCceecccccCCCeEEEEecC---------------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018        542 NPFYFLIYSQPLLCPHLQFNSRFVITSSD---------------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS  606 (635)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s  606 (635)
                            ......+.+++..++.+++|-..               -+...+|....++......      .-.....++++
T Consensus       147 ------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~------~l~~pNGI~~s  214 (340)
T d1v04a_         147 ------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE------GFDFANGINIS  214 (340)
T ss_dssp             ------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE------EESSEEEEEEC
T ss_pred             ------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC------CCCccceeEEC
Confidence                  01234577888889999988321               1233444444444322221      12346789999


Q ss_pred             CCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018        607 ETKLVCAVGSRNGTEETKLLVLDFDVDS  634 (635)
Q Consensus       607 ~d~~~l~~~~~dg~~~~~l~~~d~~~~~  634 (635)
                      ||+++|+++...+.   +|+.|+++.+.
T Consensus       215 ~d~~~lyVa~t~~~---~i~~y~~~~~~  239 (340)
T d1v04a_         215 PDGKYVYIAELLAH---KIHVYEKHANW  239 (340)
T ss_dssp             TTSSEEEEEEGGGT---EEEEEEECTTS
T ss_pred             CCCCEEEEEeCCCC---eEEEEEeCCCc
Confidence            99998877766554   57777777654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.85  E-value=5.6  Score=34.40  Aligned_cols=62  Identities=10%  Similarity=0.007  Sum_probs=38.4

Q ss_pred             CceecccccCCCeEEEEe-cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEc
Q psy18018        551 QPLLCPHLQFNSRFVITS-SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVG  615 (635)
Q Consensus       551 ~~v~~~~~s~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~  615 (635)
                      ..-+.++++||+++|+++ ...+.|++|++.....+......   ......-.+.+.+ +|.+.+++
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~---~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe---cCCCCCCccEEecCCCEEEEEE
Confidence            346789999999877655 56788999998755433332221   1234556677765 45544443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.38  E-value=8.5  Score=34.58  Aligned_cols=224  Identities=13%  Similarity=0.069  Sum_probs=110.0

Q ss_pred             EEEEecCcEEEEe-----cCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC----------------C
Q psy18018        347 FGFQFDGVHVVSG-----SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD----------------S  403 (635)
Q Consensus       347 ~~~s~~~~~l~~~-----~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d----------------g  403 (635)
                      .+++|++++++.+     +..-.++++|+.+++.+...-. ......++|.  ++.|+-...+                .
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            5688999998753     2334799999999987642211 1122456675  4444433211                2


Q ss_pred             cEEEEEccCCccee-------------EEEEEeeCCcEEEEEeC---CCc--EEEEeCCCCc--------eeeeeccCCc
Q psy18018        404 TVKVWDIVSGTKKL-------------MFRICLFDGVHVVSGSL---DTS--IRVWEAESGN--------LRHTLMGHQS  457 (635)
Q Consensus       404 ~i~iwd~~~~~~~~-------------~~~~~~~~~~~l~~~~~---d~~--i~~~d~~~~~--------~~~~~~~~~~  457 (635)
                      .+..+.+.+.....             .....+.++++++....   +..  +.+.++....        ..........
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  288 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG  288 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccccc
Confidence            46666665543211             11224567777664332   222  3344443221        1112222233


Q ss_pred             cEEEEEecCCEEEE-Ee---CCCcEEEEECCCCce--eEEecCCCcccccE--EEEEecCCEEEEEe-CCC--cEEEEEC
Q psy18018        458 LTSGMELRNNILVS-GN---ADSTVKVWDIVSGQC--LQTLSGRNKHQSAV--TCLQFNSRFVITSS-DDG--TVKLWDV  526 (635)
Q Consensus       458 ~v~~~~~~~~~l~s-~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-~d~--~i~vwd~  526 (635)
                      ...-+...+..+.. ..   .++.|...++.+...  ...+-..  +...+  ..+.+.+.+|+... .++  .|+++++
T Consensus       289 ~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~--~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~  366 (430)
T d1qfma1         289 EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE--HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (430)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC--CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             ceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecc--cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEEC
Confidence            33334445553333 32   235666667665432  1222211  22223  34455566665554 554  4888999


Q ss_pred             CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC----CeEEEEeCCCCce
Q psy18018        527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----GTVKLWDVKTGEF  584 (635)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~v~iwd~~~~~~  584 (635)
                      .+++........           ...+..+...++...+...-.+    .++.-+|+.+++.
T Consensus       367 ~~~~~~~~~~~~-----------~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         367 ATGALLKIFPLE-----------VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TTCCEEEEECCC-----------SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CCCcEEEecCCC-----------CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            887654332211           1223333334444433322222    6788899988864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=6.3  Score=32.80  Aligned_cols=209  Identities=13%  Similarity=0.146  Sum_probs=100.7

Q ss_pred             eEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeC---------CCcEEEEEccCCcceeEE---------EEEe
Q psy18018        364 SIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNA---------DSTVKVWDIVSGTKKLMF---------RICL  423 (635)
Q Consensus       364 ~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~---------~~~~  423 (635)
                      .+.+||..+++-..  .+......-......+.+++.|+.         -..+.+||..+.......         ....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~   99 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV   99 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc
Confidence            57789988765322  222222222333334555555542         135667776654332211         1233


Q ss_pred             eCCcEEEEEeCCCc-----EEEEeCCCCceeeeec--cCCccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeEE
Q psy18018        424 FDGVHVVSGSLDTS-----IRVWEAESGNLRHTLM--GHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGQCLQT  491 (635)
Q Consensus       424 ~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~  491 (635)
                      .+++.++.++.++.     ...++..+......-.  ............+.+++.|+.+     ..+..||..+.+....
T Consensus       100 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~  179 (288)
T d1zgka1         100 IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI  179 (288)
T ss_dssp             ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred             cceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccccc
Confidence            35665655544333     3345555443221111  1111222333455566666543     4578888876553322


Q ss_pred             ecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEE
Q psy18018        492 LSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVI  566 (635)
Q Consensus       492 ~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  566 (635)
                       ...............+++.++.++.+     .....+|..+.+.......     +      .....+-+...++++++
T Consensus       180 -~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-----p------~~r~~~~~~~~~~~l~v  247 (288)
T d1zgka1         180 -TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-----K------HRRSALGITVHQGRIYV  247 (288)
T ss_dssp             -CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-----S------SCCBSCEEEEETTEEEE
T ss_pred             -cccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc-----c------CcccceEEEEECCEEEE
Confidence             21111122223333467777776654     3467777776654332111     0      01111112223788888


Q ss_pred             EecCCC-----eEEEEeCCCCce
Q psy18018        567 TSSDDG-----TVKLWDVKTGEF  584 (635)
Q Consensus       567 ~~~~d~-----~v~iwd~~~~~~  584 (635)
                      .|+.++     .+.+||+.+++.
T Consensus       248 ~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         248 LGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             ECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EecCCCCeecceEEEEECCCCEE
Confidence            887654     488999998764

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=84.19  E-value=10  Score=31.38  Aligned_cols=212  Identities=13%  Similarity=0.039  Sum_probs=106.3

Q ss_pred             ceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCccee-------
Q psy18018        345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKL-------  417 (635)
Q Consensus       345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------  417 (635)
                      .+..++....+.++-. ||.|..|-....-++-.-......+..++......+.- .|+.+..|.........       
T Consensus        27 ~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~~~~~~~  104 (273)
T d1jtdb_          27 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARS  104 (273)
T ss_dssp             SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGS
T ss_pred             CcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeecccccccc
Confidence            3555665555555444 79999997654433322222334566666654444333 48999999754321110       


Q ss_pred             EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018        418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK  497 (635)
Q Consensus       418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  497 (635)
                      ............+. -.|+.+..|.................+..+.-....++. ..++.++.|..........   ...
T Consensus       105 ~~~~i~~~~~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~~~~G~~~~g~~~~---~~~  179 (273)
T d1jtdb_         105 GVDAIAAGAWASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VKNGGVIAWGDNYFGQTTV---PAE  179 (273)
T ss_dssp             SCCEEEEETTEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EETTEEEEEECCTTSTTSC---CGG
T ss_pred             ceeEEeeecccccc-cccccceecccCCCCceeeeccCCceEEEEeccceeeee-ecccceeEeecccCCcccc---ccc
Confidence            01111112222222 247888888754332222222223345555444443333 3477888887654322211   112


Q ss_pred             ccccEEEEEecCCEEEEEeCCCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018        498 HQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL  576 (635)
Q Consensus       498 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i  576 (635)
                      ....|..++......+.-. ||.|+.|=.... ++..+..            ....|..++-.... .++.  .||.|..
T Consensus       180 ~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~~~~------------~~~~v~~I~~G~~~-~~~l--~~g~v~~  243 (273)
T d1jtdb_         180 AQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWY-SLAL--KNGKVIA  243 (273)
T ss_dssp             GSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSC-EEEE--ETTEEEE
T ss_pred             ccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCCCcc------------CCCCcEEEEeCcce-EEEE--ECCEEEE
Confidence            4567888888554444444 899999965432 2211111            12335555443333 3333  3789999


Q ss_pred             EeC
Q psy18018        577 WDV  579 (635)
Q Consensus       577 wd~  579 (635)
                      |--
T Consensus       244 WG~  246 (273)
T d1jtdb_         244 WGS  246 (273)
T ss_dssp             EST
T ss_pred             ECC
Confidence            953

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=83.53  E-value=13  Score=32.06  Aligned_cols=146  Identities=10%  Similarity=0.226  Sum_probs=81.4

Q ss_pred             eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe------cCC--EEEEEe-CC---CcEEEEECCC-CceeE
Q psy18018        424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL------RNN--ILVSGN-AD---STVKVWDIVS-GQCLQ  490 (635)
Q Consensus       424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~------~~~--~l~s~~-~d---g~i~iwd~~~-~~~~~  490 (635)
                      |+...++....++-+++||+. |+.++.+..  +.++.+..      .++  -++.++ .+   .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            344556666666668899985 777766642  34444433      222  233443 32   3577787642 23333


Q ss_pred             EecCCCc----ccccEEEEEe--c---CC-EEEEEeCCCcEEEEECCC---CceeeeeccceecCceeEEeccCceeccc
Q psy18018        491 TLSGRNK----HQSAVTCLQF--N---SR-FVITSSDDGTVKLWDVKT---GEFSTPLMSSFILNPFYFLIYSQPLLCPH  557 (635)
Q Consensus       491 ~~~~~~~----~~~~v~~~~~--~---~~-~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  557 (635)
                      .+.....    ....+..+|+  +   +. ++++...+|.+..|.+..   +......        +........+..+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~l--------vr~f~~~~q~EGCV  186 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKK--------VRAFKMNSQTEGMA  186 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEE--------EEEEECSSCEEEEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEe--------eeccCCCCccceEE
Confidence            3332110    1123445554  2   43 567777889998887642   3222222        22223355788888


Q ss_pred             ccCCCeEEEEecCCCeEEEEeCC
Q psy18018        558 LQFNSRFVITSSDDGTVKLWDVK  580 (635)
Q Consensus       558 ~s~~~~~l~~~~~d~~v~iwd~~  580 (635)
                      +.+..+.|..+-++.-|..++..
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESS
T ss_pred             EeCCCCcEEEecCccceEEEEec
Confidence            99988899989887666555543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=11  Score=30.98  Aligned_cols=212  Identities=8%  Similarity=-0.014  Sum_probs=110.7

Q ss_pred             CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEE-eCCCcEEEEEccCCccee-------------EEEEEeeCC
Q psy18018        363 TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWDIVSGTKKL-------------MFRICLFDG  426 (635)
Q Consensus       363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~  426 (635)
                      ..|+.+++.+.+....+ .....+.++.++  .+.+.-. ...+.|.-.++.......             .-..+.+-+
T Consensus        10 ~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            35888888865544433 344566788887  4555544 345566655554322110             011233334


Q ss_pred             cEEEEE-eCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--CEEEEEe--CCCcEEEEECCCCceeEEecCCCccccc
Q psy18018        427 VHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGN--ADSTVKVWDIVSGQCLQTLSGRNKHQSA  501 (635)
Q Consensus       427 ~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~  501 (635)
                      ..|..+ ...+.|.+.++........+........++..++  .++.-..  ..+.|.-.++...........   .-..
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~---~~~~  165 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQW  165 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---SCSC
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc---ccce
Confidence            444444 4556788888876655554554455566777653  3444332  345677777654433333322   2234


Q ss_pred             EEEEEec--CCEEE-EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018        502 VTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD  578 (635)
Q Consensus       502 v~~~~~~--~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd  578 (635)
                      ...+++|  ++.|+ +-...+.|...++.............         ......++++. ++.+..+-..++.|...+
T Consensus       166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~---------~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---------RLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT---------TTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCC---------cccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence            5667774  45444 44566788888886543222211110         01123345544 344555545667787777


Q ss_pred             CCCCceEEee
Q psy18018        579 VKTGEFIRNL  588 (635)
Q Consensus       579 ~~~~~~~~~~  588 (635)
                      ..+++....+
T Consensus       236 ~~~g~~~~~~  245 (266)
T d1ijqa1         236 RLTGSDVNLL  245 (266)
T ss_dssp             TTTCCCCEEE
T ss_pred             CCCCcceEEE
Confidence            7777655444