Psyllid ID: psy18019

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------
MNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDFDENIEKRKTIALEPQPSPAELPKSPLGVFKPDAHAASFEQKIGRRSSEFSSVEKATQETVITRRDTAVALAALADRNSSIGTDASKYTPPSRRNSARELRDERDLASEYHDNRDLANEYHDIGRNSPNEWRWRPWPTGIPP
ccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHccccccccEccccccccEEEcccccccEEEcccccccEEEEccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccEEEEccccccccHHHcHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcccccccHHcccccccHHHHHcccccHHHHHHHHHccHHHcccccccccccccccccccccHccccHHccccccccccccccccccccccccccccccccc
MNSEELLLRAAEERHAIVERYLKgrhagaeihsweepdndfygnfdrfgfitssrqisrselicpfptsigsafgkhllnssffipgfpkllRYQEHHDKIMSKFLPKLkkhldknnvdtgIYTLKWFFQCFLdrhygyenghinmNSEELLLRAAEERHAIVERYLKgrhagaeihsweepdndfygnfdrfgfitdlawkyspdirqidldvnrtyrehnmfrdrysvkQTQLFNVLAAYSEMRDLawkyspdirqidlDVNRtyrehnmfrdrysvkQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLvsdskysmhessaqkdglekkDKEIELEREKKWAKMFHKwdkvpadklkrrvykgipnscrgrgwslllnlpdpgdgdesnprsmDMRQRYEESTRKYEEMRDLAwkyspdirqidlDVNRtyrehnmfrdrysvkQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLvsdskysmhgffipgfpkllRYQEHHDKIMSKFLPKLkkhldknnvdtgIYTLKWFFQCFldripfkltlRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRnkldyagqpspaelpksplgvfkpdahaasfeqkfdfdenIEKRKtialepqpspaelpksplgvfkpdahaASFEQKigrrssefssveKATQETVITRRDTAVALAALADrnssigtdaskytppsrrnsaRELRDERDlaseyhdnrdlaneyhdigrnspnewrwrpwptgipp
MNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNmfrdrysvkqtQLFNVLAAYSEMRDLAWkyspdirqidldVNRTYREHNMfrdrysvkqTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMhessaqkdglekkdkEIELEREKKWakmfhkwdkvpadklkrrvykgipnscrgrgwsLLLNLPdpgdgdesnprsmdmRQRYEESTRKYEEMRDLawkyspdirqidldVNRTYREHNMfrdrysvkqTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDFDENIEKRKtialepqpspaELPKSPLGVFKPDAHAASFEQkigrrssefssvekatqetvitrrDTAVALAAladrnssigtdaskytppsrrnsarelRDERDLaseyhdnrdlaneyhdigrnspnewrwrpwptgipp
MNSeelllraaeerHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSeelllraaeerHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSlllnlpdpgdgdESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDFDENIEKRKTIALEPQPSPAELPKSPLGVFKPDAHAASFEQKIGRRSSEFSSVEKATQETVITRRDTAVALAALADRNSSIGTDASKYTPPSRRNSARELRDERDLASEYHDNRDLANEYHDIGRNSPNEWRWRPWPTGIPP
*************RHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLV******************************KWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNL*******************************DLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEEL**********************************************************************************************************VAL***********************************************************WRWR********
*********AAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGS*FGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYG******************EERHAIVERYLK*********SWEEPDNDFYGNFDRFGFITD********************REHNMFRDRYS************************PDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEEST******************QIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEEL*****************************************************************************************************************************************************************************W******
MNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDS****************KDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPG************************EMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDFDENIEKRKTIALEPQPSPAELPKSPLGVFKPDAHAASFE*******************TVITRRDTAVALAALADRNSSIGTDA******************RDLASEYHDNRDLANEYHDIGRNSPNEWRWRPWPTGIPP
*****LLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQ**********L*VFKPDAHAAS*E*KFDFD***************************************************************************************************************************NSPNEWRWRPWPTGIP*
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MNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITSSRQISRSELICPFPTSIGSAFGKHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATxxxxxxxxxxxxxxxxxxxxxPSPAELPKSPLGVFKPDAHAASFEQKFDFDENIEKRKTIALEPQPSPAELPKSPLGVFKPDAHAASFEQKIGRRSSEFSSVEKATQETVITRRDTAVALAALADRNSSIGTDASKYTPPSRRNSARELRDERDLASEYHDNRDLANEYHDIGRNSPNEWRWRPWPTGIPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query827 2.2.26 [Sep-21-2011]
Q80XC3 819 USP6 N-terminal-like prot yes N/A 0.377 0.380 0.547 1e-104
Q92738 828 USP6 N-terminal-like prot yes N/A 0.377 0.376 0.547 1e-103
P35125 1406 Ubiquitin carboxyl-termin no N/A 0.354 0.208 0.343 6e-47
Q8IZP1549 TBC1 domain family member no N/A 0.360 0.542 0.323 2e-44
P0C7X1549 TBC1 domain family member no N/A 0.360 0.542 0.320 2e-44
Q6DHY5549 TBC1 domain family member no N/A 0.360 0.542 0.320 2e-44
A6NER0549 TBC1 domain family member no N/A 0.354 0.533 0.325 2e-44
Q6IPX1549 TBC1 domain family member no N/A 0.360 0.542 0.317 2e-43
A6NDS4549 TBC1 domain family member no N/A 0.360 0.542 0.314 5e-43
O60447 810 Ecotropic viral integrati no N/A 0.310 0.317 0.318 5e-35
>sp|Q80XC3|US6NL_MOUSE USP6 N-terminal-like protein OS=Mus musculus GN=Usp6nl PE=1 SV=2 Back     alignment and function desciption
 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 232/329 (70%), Gaps = 17/329 (5%)

Query: 348 KDKEIELEREKKWAKMFHKWDKVP-ADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDE 406
           + K++E+ER  KW KM  KW++    +K  RR+YKGIP   RG  W+LLL +P       
Sbjct: 65  RQKQLEIERTSKWLKMLKKWERYKNTEKFHRRIYKGIPLQLRGEVWALLLEIP------- 117

Query: 407 SNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQ 466
                    +  EE+   Y +++  A   SPDIRQIDLDVNRT+R+H MFRDRY VKQ  
Sbjct: 118 ---------KMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQS 168

Query: 467 LFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGF 526
           LF+VLAAYS+YN E+GYCQGMSQI A+LLMY++EE+AFWAL  L S  K++MHGFF+ GF
Sbjct: 169 LFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGF 228

Query: 527 PKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIY 586
           PKLLR+QEHH+KI++KFL KLK+HLD   + T  YT+KWFFQCFLDR PF+L LR+WDIY
Sbjct: 229 PKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIY 288

Query: 587 ILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEE 646
           I EGER++TAM+Y +LK+H++ L KLSM++++ F+Q  L K F + DD  IE LQ  + E
Sbjct: 289 IFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFLQETLAKDFFFEDDFVIEQLQVSMAE 348

Query: 647 LKRNKLDYAGQPSPAELPKSPLGVFKPDA 675
           LKR KLD        E PK PLG   P++
Sbjct: 349 LKRAKLDLPEPGKEDEYPKKPLGQLPPES 377
Acts as a GTPase-activating protein for RAB5A. Involved in receptor trafficking. In complex with EPS8 inhibits internalization of EGFR.
Mus musculus (taxid: 10090)
>sp|Q92738|US6NL_HUMAN USP6 N-terminal-like protein OS=Homo sapiens GN=USP6NL PE=1 SV=3 Back     alignment and function description
>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6 PE=1 SV=2 Back     alignment and function description
>sp|Q8IZP1|TBC3A_HUMAN TBC1 domain family member 3 OS=Homo sapiens GN=TBC1D3 PE=2 SV=5 Back     alignment and function description
>sp|P0C7X1|TBC3H_HUMAN TBC1 domain family member 3H OS=Homo sapiens GN=TBC1D3H PE=2 SV=2 Back     alignment and function description
>sp|Q6DHY5|TBC3G_HUMAN TBC1 domain family member 3G OS=Homo sapiens GN=TBC1D3G PE=2 SV=2 Back     alignment and function description
>sp|A6NER0|TBC3F_HUMAN TBC1 domain family member 3F OS=Homo sapiens GN=TBC1D3F PE=2 SV=2 Back     alignment and function description
>sp|Q6IPX1|TBC3C_HUMAN TBC1 domain family member 3C OS=Homo sapiens GN=TBC1D3C PE=2 SV=2 Back     alignment and function description
>sp|A6NDS4|TBC3B_HUMAN TBC1 domain family member 3B OS=Homo sapiens GN=TBC1D3B PE=2 SV=1 Back     alignment and function description
>sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog OS=Homo sapiens GN=EVI5 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query827
242022316616 conserved hypothetical protein [Pediculu 0.478 0.642 0.532 1e-131
328716676520 PREDICTED: USP6 N-terminal-like protein- 0.372 0.592 0.657 1e-115
321475475449 hypothetical protein DAPPUDRAFT_193121 [ 0.376 0.692 0.568 1e-110
348521292896 PREDICTED: USP6 N-terminal-like protein- 0.505 0.466 0.456 1e-107
405969570674 USP6 N-terminal-like protein [Crassostre 0.385 0.473 0.547 1e-106
326911119839 PREDICTED: USP6 N-terminal-like protein- 0.425 0.419 0.530 1e-105
345310081 1052 PREDICTED: USP6 N-terminal like [Ornitho 0.391 0.307 0.548 1e-104
427782949650 Hypothetical protein [Rhipicephalus pulc 0.499 0.635 0.443 1e-104
348505966837 PREDICTED: ubiquitin carboxyl-terminal h 0.402 0.397 0.539 1e-104
410918619862 PREDICTED: USP6 N-terminal-like protein- 0.386 0.371 0.543 1e-104
>gi|242022316|ref|XP_002431586.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516894|gb|EEB18848.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/471 (53%), Positives = 308/471 (65%), Gaps = 75/471 (15%)

Query: 328 VSDSKYSMHESSAQK--DGLEKKDKEIELEREKKWAKMFHKWDKV-PADKLKRRVYKGIP 384
           V+D    MH+    K  D  E + K++E+ER  KW KM   W  V  + KLKRR++KGIP
Sbjct: 44  VTDRYGFMHDKRLPKTADANELRQKDLEMERVNKWLKMTMDWQSVLGSKKLKRRIFKGIP 103

Query: 385 NSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDL 444
           +  R   W LLLN+                ++  EE   KYEEMRDLA K+S DIRQIDL
Sbjct: 104 DKLRALIWGLLLNV----------------KKVKEEQKGKYEEMRDLALKWSTDIRQIDL 147

Query: 445 DVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAF 504
           DVNRTYR+H MFRDRYSV+Q  LFN+L AYS+YN +IGYCQGMSQIAA+LLMY +EE+AF
Sbjct: 148 DVNRTYRDHIMFRDRYSVQQIALFNILGAYSIYNSDIGYCQGMSQIAALLLMYFNEEDAF 207

Query: 505 WALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLK 564
           WAL+ L +DS+Y+MHGFFIPGFPKL+RYQEHHDKIM+KFLPKLKKHLDKN VDTGIYTLK
Sbjct: 208 WALAILFADSRYNMHGFFIPGFPKLIRYQEHHDKIMNKFLPKLKKHLDKNGVDTGIYTLK 267

Query: 565 WFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVK 624
           WFFQCFLDRIPF LTLRVWD+Y+LEGE+ +T MAYNLLKMH++ L +L MDDIL ++Q++
Sbjct: 268 WFFQCFLDRIPFPLTLRVWDVYLLEGEKTLTCMAYNLLKMHRKALMRLGMDDILQYLQIR 327

Query: 625 LEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKF 684
           LEK F + DD+T+E+LQ+  EEL++ +LDYAG P P ELPK P G+F             
Sbjct: 328 LEKDFGFDDDSTMETLQRACEELRKAQLDYAGPPLPHELPKKPFGIF------------- 374

Query: 685 DFDENIEKRKTIALEPQPSPAELPKSPLGVFKPDAHAASFEQKIGRRSSEFSSVEKATQE 744
                        +EP                      + + KIGRR  EFS  EK T E
Sbjct: 375 -------------VEP----------------------TVDLKIGRRKMEFSHEEKVTNE 399

Query: 745 TVITRRDTAVALA------ALADRNS--SIGTDASKYTPPSRRNSARELRD 787
           TVI RRDTA+  A      ++++R+S  SIG         S   S R L D
Sbjct: 400 TVIMRRDTAIENALMNSDDSMSNRHSRLSIGDSVGLGDDSSHGGSKRSLAD 450

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328716676|ref|XP_001945829.2| PREDICTED: USP6 N-terminal-like protein-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|321475475|gb|EFX86438.1| hypothetical protein DAPPUDRAFT_193121 [Daphnia pulex] Back     alignment and taxonomy information
>gi|348521292|ref|XP_003448160.1| PREDICTED: USP6 N-terminal-like protein-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|405969570|gb|EKC34532.1| USP6 N-terminal-like protein [Crassostrea gigas] Back     alignment and taxonomy information
>gi|326911119|ref|XP_003201909.1| PREDICTED: USP6 N-terminal-like protein-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|345310081|ref|XP_001508840.2| PREDICTED: USP6 N-terminal like [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|427782949|gb|JAA56926.1| Hypothetical protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|348505966|ref|XP_003440531.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|410918619|ref|XP_003972782.1| PREDICTED: USP6 N-terminal-like protein-like [Takifugu rubripes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query827
UNIPROTKB|E1C053 841 USP6NL "Uncharacterized protei 0.448 0.441 0.510 2.7e-107
ZFIN|ZDB-GENE-081104-56 736 si:dkeyp-19e1.3 "si:dkeyp-19e1 0.385 0.433 0.534 5.7e-107
MGI|MGI:2138893 819 Usp6nl "USP6 N-terminal like" 0.401 0.405 0.514 5.7e-107
ZFIN|ZDB-GENE-041210-192 827 usp6nl "USP6 N-terminal like" 0.391 0.391 0.530 3.1e-106
UNIPROTKB|Q92738 828 USP6NL "USP6 N-terminal-like p 0.400 0.399 0.515 5e-106
ZFIN|ZDB-GENE-060503-323603 si:ch211-288d18.1 "si:ch211-28 0.409 0.562 0.483 8.1e-106
RGD|1311786 816 Usp6nl "USP6 N-terminal like" 0.400 0.405 0.512 1.3e-105
UNIPROTKB|E1B7U3 831 USP6NL "Uncharacterized protei 0.545 0.542 0.425 5.1e-104
UNIPROTKB|F1PAG9 822 USP6NL "Uncharacterized protei 0.536 0.540 0.427 1.2e-102
UNIPROTKB|F1RUN1 807 USP6NL "Uncharacterized protei 0.535 0.548 0.424 3.2e-102
UNIPROTKB|E1C053 USP6NL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 969 (346.2 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
 Identities = 201/394 (51%), Positives = 254/394 (64%)

Query:   318 EEAFWALSSLVSDSKYSMH-ESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVP-ADKL 375
             E+A + L   V+D    +H E     D   +K K +E+ER  KW KM   W+K    +K 
Sbjct:    37 EDADYRLYK-VTDRFGFLHPEELPVHDAAIEKQKHLEIERTTKWLKMLKSWEKYKNTEKF 95

Query:   376 KRRVYKGIPNSCRGRGWSXXXXXXXXXXXXESNPRSMDMRQRYEESTRKYEEMRDLAWKY 435
              RR+YKGIP   RG+ WS                  +D+ +  EE    Y +++  A   
Sbjct:    96 HRRIYKGIPLQFRGQVWSLL----------------LDVPKMKEEMKDLYSKLKCQARGS 139

Query:   436 SPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLL 495
             SPDIRQIDLDVNRTYR+H MFRDRY VKQ  LF+VLAAYS+YN E+GYCQGMSQI A+LL
Sbjct:   140 SPDIRQIDLDVNRTYRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLL 199

Query:   496 MYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNN 555
             MY++EE+AFWAL  L+S  K++MHGFFIPGFPKLLR+QEHHDKI++KFL KLK+HLD   
Sbjct:   200 MYMNEEDAFWALVKLLSGPKHAMHGFFIPGFPKLLRFQEHHDKILNKFLSKLKQHLDSQE 259

Query:   556 VDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMD 615
             + T  YT KWFFQCFLDR PF L+LR+WDIYILEGER++TAM+Y +LK+H++ L KL M+
Sbjct:   260 MSTSFYTTKWFFQCFLDRTPFMLSLRIWDIYILEGERVLTAMSYTILKIHRKHLMKLQME 319

Query:   616 DILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFK--P 673
             +++ F+Q  L K F Y DD  IE LQ  + ELKR KLD        E PK PLG     P
Sbjct:   320 ELVEFLQETLAKDFFYEDDYVIEQLQNSISELKRAKLDLPVAGKEDEFPKKPLGQIPSGP 379

Query:   674 DAHAASFEQKFDFDENIEKRKTIA-LEPQPSPAE 706
                  +F    +  +N    +TI   E +PSP E
Sbjct:   380 QPAMLNFTPMLN-GQNSTGTQTIRRTERRPSPVE 412
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
ZFIN|ZDB-GENE-081104-56 si:dkeyp-19e1.3 "si:dkeyp-19e1.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2138893 Usp6nl "USP6 N-terminal like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041210-192 usp6nl "USP6 N-terminal like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q92738 USP6NL "USP6 N-terminal-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-323 si:ch211-288d18.1 "si:ch211-288d18.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1311786 Usp6nl "USP6 N-terminal like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7U3 USP6NL "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAG9 USP6NL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUN1 USP6NL "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query827
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 3e-54
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 3e-53
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 7e-38
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-25
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-23
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 4e-16
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 6e-10
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 0.002
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  186 bits (473), Expect = 3e-54
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 22/226 (9%)

Query: 385 NSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDL 444
           +S RG  W LLL           N      R    + ++  +       + SPD  QI+ 
Sbjct: 1   DSLRGEVWKLLLG----------NLSESKQRDSVSQYSKLLKL------EDSPDEEQIEK 44

Query: 445 DVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLM-YLSEEEA 503
           DV RT+  H  F++     Q QL  +L AYS+YN ++GYCQGM+ IAA LL+  L EEEA
Sbjct: 45  DVPRTFPHHFFFKNGE--GQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEA 102

Query: 504 FWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTL 563
           FW   SL+   +Y +  FF+P FP L R     ++++ K  P+L KHL K  +D  ++  
Sbjct: 103 FWCFVSLL---EYLLRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFAS 159

Query: 564 KWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQL 609
           KWF   F   +P +  LR+WD+++  G+  +  +A  +LK  +++L
Sbjct: 160 KWFLTLFARELPLETVLRLWDLFLEGGKFFLFRVALAILKRFRKEL 205

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 827
KOG2058|consensus436 100.0
KOG2223|consensus586 100.0
KOG4567|consensus370 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG1092|consensus484 100.0
KOG4436|consensus948 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1102|consensus397 99.97
KOG2222|consensus 848 99.97
KOG4347|consensus671 99.96
KOG1093|consensus725 99.95
KOG2224|consensus781 99.94
KOG1091|consensus625 99.94
KOG2595|consensus395 99.93
KOG2221|consensus267 99.93
KOG2197|consensus488 99.84
KOG2058|consensus436 99.81
KOG2223|consensus586 99.76
KOG4436|consensus 948 99.75
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.7
KOG1102|consensus397 99.63
COG5210496 GTPase-activating protein [General function predic 99.63
KOG2222|consensus848 99.56
KOG2221|consensus267 99.53
KOG1092|consensus484 99.45
KOG2224|consensus781 99.36
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.27
KOG3636|consensus 669 99.26
KOG4567|consensus370 99.24
KOG4347|consensus671 99.0
KOG2801|consensus559 98.98
KOG2197|consensus488 98.78
KOG1648|consensus813 97.96
KOG1091|consensus625 97.92
KOG1093|consensus725 97.68
PF149611296 BROMI: Broad-minded protein 96.93
KOG2595|consensus395 93.88
KOG1648|consensus813 85.08
>KOG2058|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-42  Score=386.61  Aligned_cols=257  Identities=32%  Similarity=0.555  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHhhhcC---C-----CCCHHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHH
Q psy18019        352 IELEREKKWAKMFHKW---D-----KVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTR  423 (827)
Q Consensus       352 ~e~~R~~KW~kmL~~w---~-----~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~  423 (827)
                      .+..|..+|..++...   .     ...+++|++++++|||+++|+.||..+.|....                 ...++
T Consensus       118 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~-----------------~~~~~  180 (436)
T KOG2058|consen  118 YEERRQLRWELELQSNIKLHSPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQ-----------------LNYPG  180 (436)
T ss_pred             hhhhHHHHHHHHhhhhhcccccccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhh-----------------ccCch
Confidence            3455667887776652   1     122799999999999999999999999992211                 11278


Q ss_pred             HHHHHHHhhhc-CCCcccccccccccccccc-cccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhcC-H
Q psy18019        424 KYEEMRDLAWK-YSPDIRQIDLDVNRTYREH-NMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLS-E  500 (827)
Q Consensus       424 ~Y~~L~~~~~~-~s~~~~qI~~DV~RTfp~~-~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl~-E  500 (827)
                      .|+.+++.+.. .++..+||+.|+.||||++ ..|....+.+.+.|+|||.||+.+||.||||||||.+||++|++|+ |
T Consensus       181 ~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E  260 (436)
T KOG2058|consen  181 YYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE  260 (436)
T ss_pred             hHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence            89998887543 3378899999999999999 7888877777899999999999999999999999999999999998 9


Q ss_pred             HHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCCCchHH
Q psy18019        501 EEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTL  580 (827)
Q Consensus       501 edAFw~l~~Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp~e~vL  580 (827)
                      ++|||||+.++.+   .+++||.+++.+.+..+..++.+|+..+|+|+.||...+++..++++.||+++|.+.+|.+.+|
T Consensus       261 E~AFW~Lv~iie~---~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~L  337 (436)
T KOG2058|consen  261 EDAFWMLVALIEN---YLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVL  337 (436)
T ss_pred             HHHHHHHHHHHHH---hchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHH
Confidence            9999999999997   3677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHhhhhhh
Q psy18019        581 RVWDIYILEGERIMTAMAYNLLKMHQRQLAKL-SMDDILHFIQVKLEKQ  628 (827)
Q Consensus       581 RLWD~~l~eG~~~L~~valAIL~~~r~~LL~~-d~eeil~~Lq~~l~~~  628 (827)
                      ||||++|+||.+++|++|+|+++.++++|+++ +..++..+++......
T Consensus       338 rIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~  386 (436)
T KOG2058|consen  338 RIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRS  386 (436)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999 8889999998766554

>KOG2223|consensus Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG4347|consensus Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG2058|consensus Back     alignment and domain information
>KOG2223|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG3636|consensus Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>KOG4347|consensus Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query827
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 7e-24
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 1e-23
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 4e-21
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 1e-19
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 6e-06
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 1e-04
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 124/287 (43%), Gaps = 25/287 (8%)
Query: 360 WAKMFHKWDKVPADK---LKRRVYKGIPNSCRGRGWSXXXXXXXXXXXXESNPRSMDMRQ 416
           W ++  KW      +   L   V  G+P + R   W               N   +D   
Sbjct: 8   WGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGC-------HDNQAXLD--- 57
Query: 417 RYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSV 476
           RY          R L  K S     I  D++RT+  H+ F+D     Q  L+ +  AYSV
Sbjct: 58  RY----------RILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSV 107
Query: 477 YNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHH 536
           Y+ +IGYCQG S +AAVLL++  EE+AF  L  +  D  Y +   +   F  L       
Sbjct: 108 YDEDIGYCQGQSFLAAVLLLHXPEEQAFCVLVKIXYD--YGLRDLYRNNFEDLHCKFYQL 165
Query: 537 DKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTA 596
           +++  + LP L  H    N++   Y  +WF   F  + P      + D+ + EG  I+  
Sbjct: 166 ERLXQEQLPDLHSHFSDLNLEAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFH 225
Query: 597 MAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKC 643
           +A  LLK  +  L +   +  L F +V+L K+++  ++A     Q C
Sbjct: 226 VALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLXEQAC 272
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query827
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-101
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 3e-36
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 5e-13
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 1e-100
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 4e-36
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-12
2qq8_A334 TBC1 domain family member 14; structural genomics 4e-95
2qq8_A334 TBC1 domain family member 14; structural genomics 5e-31
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-12
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-64
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 4e-14
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-07
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 2e-55
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 2e-14
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-06
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-40
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
 Score =  313 bits (805), Expect = e-101
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 25/302 (8%)

Query: 355 EREKKWAKMFHKWDKVPA---DKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRS 411
           +    W ++  KW          L   V  G+P + R   W LL                
Sbjct: 3   KILYSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGC------------- 49

Query: 412 MDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVL 471
                   ++    +  R L  K S     I  D++RT+  H+ F+D     Q  L+ + 
Sbjct: 50  -------HDNQAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKIC 102

Query: 472 AAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLR 531
            AYSVY+ +IGYCQG S +AAVLL+++ EE+AF  L  ++ D  Y +   +   F  L  
Sbjct: 103 KAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD--YGLRDLYRNNFEDLHC 160

Query: 532 YQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGE 591
                +++M + LP L  H    N++  +Y  +WF   F  + P  +   + D+ + EG 
Sbjct: 161 KFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220

Query: 592 RIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNK 651
            I+  +A  LLK  +  L +   +  L F +V+L K+++  ++A     Q C  ++   K
Sbjct: 221 NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKK 280

Query: 652 LD 653
           L 
Sbjct: 281 LK 282
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query827
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 99.8
2qq8_A334 TBC1 domain family member 14; structural genomics 99.8
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 99.79
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 99.73
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 99.71
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 99.7
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 97.97
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.7e-49  Score=434.34  Aligned_cols=277  Identities=26%  Similarity=0.491  Sum_probs=231.4

Q ss_pred             HHHHHHHHHH-HhhhcCCCCC-HHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHH
Q psy18019        352 IELEREKKWA-KMFHKWDKVP-ADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMR  429 (827)
Q Consensus       352 ~e~~R~~KW~-kmL~~w~~~~-~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~  429 (827)
                      ...+|..+|. +|+.+|+.+. .++|++++++|||+++|+.||+.|+|+....       ...............|.++.
T Consensus        16 ~~~~~~~~W~~~il~~w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~-------~~~~y~~ll~~~~~~~~~~~   88 (334)
T 2qq8_A           16 FQGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNI-------THELFDICLARAKERWRSLS   88 (334)
T ss_dssp             CSSCHHHHHHHTTGGGCC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCC-------CHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHhHHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCcccc-------CHHHHHHHHHHHHHHHHHhc
Confidence            3456789998 5999999876 8999999999999999999999999985321       11111111122223333332


Q ss_pred             Hhhh------------cCCCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhh
Q psy18019        430 DLAW------------KYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMY  497 (827)
Q Consensus       430 ~~~~------------~~s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlv  497 (827)
                      ....            ...+..+||++||.||||++.+|.. .+.+++.|++||.+|+.+||++|||||||+|||+||++
T Consensus        89 ~~~~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~  167 (334)
T 2qq8_A           89 TGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILN  167 (334)
T ss_dssp             ------------------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHH
T ss_pred             cccccCcccccccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhc
Confidence            2110            0134568999999999999999986 35679999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCCCc
Q psy18019        498 LSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFK  577 (827)
Q Consensus       498 l~EedAFw~l~~Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp~e  577 (827)
                      ++|++|||||++||++  +...++|.++.+++...+..++.+|+..+|+|++||++.|+.+.+|+++||+|||+++||++
T Consensus       168 ~~E~~aF~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~  245 (334)
T 2qq8_A          168 LDTADAFIAFSNLLNK--PCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD  245 (334)
T ss_dssp             SCHHHHHHHHHHHHTS--HHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred             CCHHHHHHHHHHHHHh--hhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence            9999999999999996  23467899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhhhcCCChHHHHHHHH
Q psy18019        578 LTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQ  641 (827)
Q Consensus       578 ~vLRLWD~~l~eG~~~L~~valAIL~~~r~~LL~~d~eeil~~Lq~~l~~~~~~d~d~vI~~l~  641 (827)
                      .++||||+||++|..+++++|+|||+.+++.|+++|+++++.+|++++..   ++.+.++..+.
T Consensus       246 ~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~---~d~~~l~~~a~  306 (334)
T 2qq8_A          246 LACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED---LPAEELFASIA  306 (334)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT---CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc---CCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654   67887777654
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 827
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-28
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 5e-16
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 6e-19
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-07
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 1e-28
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 5/168 (2%)

Query: 354 LEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMD 413
           ++R  K+  +      +    L++  + GIP   R   W LL+        +        
Sbjct: 4   IQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPV---NTKRQEGFL 60

Query: 414 MRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAA 473
            R+R E          D   +  P   QI++D+ RT     +++ +    Q  L  +L  
Sbjct: 61  QRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV--QNSLQRILYL 118

Query: 474 YSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGF 521
           +++ +   GY QG++ +          E    +    V     S +  
Sbjct: 119 WAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMV 166
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query827
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.95
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.79
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.69
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 95.4
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.5e-28  Score=243.67  Aligned_cols=157  Identities=19%  Similarity=0.398  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCHHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHHHhh
Q psy18019        353 ELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLA  432 (827)
Q Consensus       353 e~~R~~KW~kmL~~w~~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~~~~  432 (827)
                      .++|..+|.+++.+.+.+..++||+++++|||+.+|+.||+.|||+.+.+        .+.......+....|..+....
T Consensus         3 ~~~~i~~~~~~l~~~~~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~--------~~~~~~~~~~~~~~y~~~~~~~   74 (194)
T d1fkma1           3 IIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVN--------TKRQEGFLQRKRKEYRDSLKHT   74 (194)
T ss_dssp             HHHHHHHHHHHHSSCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSB--------GGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCc--------hhhHHHHHHHHhhhhhhhhhhh
Confidence            36789999999988776779999999999999999999999999987652        2233334555666676665543


Q ss_pred             hcC-----CCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhc---------
Q psy18019        433 WKY-----SPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYL---------  498 (827)
Q Consensus       433 ~~~-----s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl---------  498 (827)
                      ...     .+..++|++||.||+|++++|..  +.+++.|+|||.+||.+||++|||||||+|||+||+++         
T Consensus        75 ~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~  152 (194)
T d1fkma1          75 FSDQHSRDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQ  152 (194)
T ss_dssp             SSSSCSTHHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGG
T ss_pred             hhcccccchHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhh
Confidence            221     12357899999999999999986  67889999999999999999999999999999999865         


Q ss_pred             --------------------CHHHHHHHHHHHHhccccccccccc
Q psy18019        499 --------------------SEEEAFWALSSLVSDSKYSMHGFFI  523 (827)
Q Consensus       499 --------------------~EedAFw~l~~Lm~~~~~~l~~~f~  523 (827)
                                          .|+||||||++||.+    ++++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~----i~d~y~  193 (194)
T d1fkma1         153 IDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ----ITDNYI  193 (194)
T ss_dssp             GGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGG----GGGGSS
T ss_pred             hhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHh----hhccCC
Confidence                                189999999999986    666664
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure