Psyllid ID: psy18023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MFRRKNHDCLRLRRHYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHcccHHHccccHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfrrknhdclRLRRHYFALFRMfdgltpvtdgsteeseinlessngieeqEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE
Flexible Loop (DISEMBL)
mfrrknhdclrLRRHYFALFRMFDGLtpvtdgsteeSEINLessngieeqemEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE
Low Complexity Region (SEG)
MFRRKNHDCLRLRRHYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE
Disordered region (IsUnstruct)
*******DCLRLRRHYFALFRMFDGLTPV***************************KVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELN*****
Disordered Region (DISOPRED)
********CLRLRRHYFALFRMFDGLTPV*********************************LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLI*********DQIKKELDQMVK***LTIKELNQIIKELNQIIKEL******
Disordered Region (DISEMBL)
********CLRLRRHYFALFRMFDGLTPVT*************************CKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE
Disordered Region (DISPRO)
****KNHDCLRLRRHYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRRKNHDCLRLRRHYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
P24043	3122	Laminin subunit alpha-2 O	yes	N/A	0.880	0.042	0.232	0.0005

>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 13/146 (8%)

Query: 18   ALFRMFDGLTPVTDGSTEE-SEINLESSNGIEEQEME------KECKVDFNKL----DQI 66
            A  R  +GL    D   +E    NLE+   I E E+       K+ K  F +     +++
Sbjct: 1709 AFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEM 1768

Query: 67   KKELDQIIKELDQIIKELDLIIKESNQVIKELNLI--IKESNQNKLDQIKKELDQMVKEL 124
            +K+L + + +    + +   +++E+   I+E N +  + + N   L++ K+ ++   +++
Sbjct: 1769 EKDLREKLADYKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQI 1828

Query: 125  DLTIKELNQIIKELNQIIKELNQIVE 150
            + T+KE N I+ E N++  E+N I++
Sbjct: 1829 ENTLKEGNDILDEANRLADEINSIID 1854

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
301625718	208	PREDICTED: hypothetical protein LOC10049	0.649	0.471	0.43	7e-11
294872622	151	Tropomyosin, putative [Perkinsus marinus	0.569	0.569	0.534	2e-09
291235748	369	PREDICTED: hypothetical protein [Saccogl	0.576	0.235	0.467	4e-09
344256706	170	hypothetical protein I79_020777 [Cricetu	0.543	0.482	0.379	1e-08
221122015	200	PREDICTED: uncharacterized protein LOC10	0.649	0.49	0.34	7e-06
294872624	121	Kinesin heavy chain, putative [Perkinsus	0.615	0.768	0.411	5e-05
154302422	1240	hypothetical protein BC1G_09995 [Botryot	0.582	0.070	0.455	0.0007

>gi|301625718|ref|XP_002942049.1| PREDICTED: hypothetical protein LOC100491913 [Xenopus (Silurana) tropicalis]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 2/100 (2%)

Query: 54  KECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQN--KLD 111
           KE      K D+  KE DQ +KE+DQ IK++D  +KE++Q +KE++  +KE+ Q   + D
Sbjct: 89  KEADEGLKKADEGLKEADQGLKEVDQGIKDVDQGLKEADQGLKEVDQGLKEAGQGLKEAD 148

Query: 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
           Q  KE DQ +KE+D  +KE  Q +KE++Q IKE  Q ++E
Sbjct: 149 QGIKEADQGLKEVDQGLKEAGQGLKEVDQGIKEAGQGLKE 188

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|294872622|ref|XP_002766339.1| Tropomyosin, putative [Perkinsus marinus ATCC 50983] gi|239867144|gb|EEQ99056.1| Tropomyosin, putative [Perkinsus marinus ATCC 50983]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 63  LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQM 120
           LDQIKK LDQI + LDQI K LD I K  +Q+ + L+ I K  +Q    LDQI K LDQ+
Sbjct: 15  LDQIKKNLDQISESLDQISKSLDQISKSLDQISESLDQISKSLDQISESLDQISKSLDQI 74

Query: 121 VKELDLTIKELNQIIKELNQIIKELNQI 148
            K LD   K L+QI K L+QI K L+QI
Sbjct: 75  SKSLDQISKSLDQISKSLDQICKSLDQI 102

Source: Perkinsus marinus ATCC 50983

Species: Perkinsus marinus

Genus: Perkinsus

Family: Perkinsidae

Order: Perkinsida

Superkingdom: Eukaryota

>gi|291235748|ref|XP_002737809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 60  FNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQ 119
           + +L  I KEL  I KEL  I KEL  I KE   + KEL  I KE     L  I KEL  
Sbjct: 230 YKELASIYKELASICKELASIYKELASICKELASIYKELASICKE-----LASIYKELAS 284

Query: 120 MVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
           + KEL    KEL  I KEL  I KEL  I +E
Sbjct: 285 ICKELASIYKELASICKELASICKELASIYKE 316

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|344256706|gb|EGW12810.1| hypothetical protein I79_020777 [Cricetulus griseus]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 62  KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMV 121
           +LD +   L  +I  L  +I ELD +I E + VI +L+ +I E     LD +  ELD ++
Sbjct: 78  ELDYVILALGYVILALGHVIPELDCVIPELDCVIPQLDCVIPE-----LDCVIPELDCVI 132

Query: 122 KELDLTIKELNQIIKELNQIIKELNQI 148
            ELD  I EL+ +I EL+ +I EL+ +
Sbjct: 133 PELDCVIPELDCVIPELDCVIPELDCV 159

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221122015|ref|XP_002163596.1| PREDICTED: uncharacterized protein LOC100204099 [Hydra magnipapillata]

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 54  KECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLD 111
           KE      K   + KE   +IKE   +IKE   +IKE   +IKE   +IKE      +  
Sbjct: 4   KEYTYLIKKYTHLIKEYTHLIKEYTHLIKEYIHLIKEYTHLIKEYTHLIKEYTHLIKEYT 63

Query: 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
            + KE   ++KE    IKE   +IKE   +IKE   +++E
Sbjct: 64  HLIKEYTHLIKEYTHLIKEYTHLIKEYTHLIKEYTHLIKE 103

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|294872624|ref|XP_002766340.1| Kinesin heavy chain, putative [Perkinsus marinus ATCC 50983] gi|239867145|gb|EEQ99057.1| Kinesin heavy chain, putative [Perkinsus marinus ATCC 50983]

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 9/102 (8%)

Query: 56  CKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLI------IKESNQN- 108
           C   FN L+QI   LDQ+ K L+QI + LD I +   Q+ + L  I      I ES +  
Sbjct: 6   CGAIFNSLEQIDASLDQLSKSLEQISESLDQIGENLEQISESLEQIDASLDQISESLEQI 65

Query: 109 --KLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148
              L+QI K LDQ+ K LD   K L+QI + ++QI K L+QI
Sbjct: 66  SESLEQISKSLDQISKSLDQISKSLDQISRTVDQISKSLDQI 107

Source: Perkinsus marinus ATCC 50983

Species: Perkinsus marinus

Genus: Perkinsus

Family: Perkinsidae

Order: Perkinsida

Superkingdom: Eukaryota

>gi|154302422|ref|XP_001551621.1| hypothetical protein BC1G_09995 [Botryotinia fuckeliana B05.10]

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 2/90 (2%)

Query: 63  LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNK--LDQIKKELDQM 120
           L+Q  K L+Q  +EL+Q  + L+   +E NQ  + LN   KE NQ+K  L+Q KK L+Q 
Sbjct: 419 LNQSNKALNQSKEELNQSKEALNQFKEELNQSNEALNQSKKELNQSKEELNQSKKTLNQS 478

Query: 121 VKELDLTIKELNQIIKELNQIIKELNQIVE 150
            KEL+ + +ELNQ  +ELNQ  +ELNQ  E
Sbjct: 479 KKELNQSKEELNQSKEELNQSKEELNQSKE 508

Source: Botryotinia fuckeliana B05.10

Species: Botryotinia fuckeliana

Genus: Botryotinia

Family: Sclerotiniaceae

Order: Helotiales

Class: Leotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
UNIPROTKB|Q8IIG7	1070	PF11_0207 "Uncharacterized pro	0.682	0.096	0.342	5.8e-11
DICTYBASE|DDB_G0278545	1213	fimC "fimbrin-3" [Dictyosteliu	0.715	0.089	0.357	3e-07
DICTYBASE|DDB_G0274241	1080	bre1 "RmlC-like cupin family p	0.761	0.106	0.315	1.5e-06
CGD|CAL0001468	895	SYS3 [Candida albicans (taxid:	0.920	0.155	0.284	3.1e-06
UNIPROTKB|Q59UF5	895	SYS3 "Potential GRIP domain Go	0.920	0.155	0.284	3.1e-06
DICTYBASE|DDB_G0270444	1360	DDB_G0270444 "protein kinase,	0.768	0.085	0.346	3.1e-06
DICTYBASE|DDB_G0275495	799	cepE "centrosomal protein 91 k	0.635	0.120	0.305	4.4e-06
CGD|CAL0001345	696	orf19.6357 [Candida albicans (	0.834	0.181	0.285	6.1e-06
UNIPROTKB|Q59PD6	696	MAD1 "Putative uncharacterized	0.834	0.181	0.285	6.1e-06
UNIPROTKB|Q8I659	1383	PFB0765w "Uncharacterized prot	0.735	0.080	0.295	6.6e-06

UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 153 (58.9 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
 Identities = 36/105 (34%), Positives = 70/105 (66%)

Query:    49 EQEMEKECKVDFNKL-DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ 107
             ++E+++E K +  ++ ++IK+E+ + IKE+ + IKE+   IKE  + IKE+   IKE  +
Sbjct:   515 KEEIKEEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEIKEVKEEIKEVKEEIKEEIK 574

Query:   108 NKLDQIKKELDQMVKELDLTIKE-LNQIIKELNQIIKELNQIVEE 151
                ++IK+E+ + +KE+   IKE + + IKE+ + IKE+ + ++E
Sbjct:   575 EVKEEIKEEIKEEIKEVKEEIKEEVKEEIKEVKEEIKEVKEEIKE 619

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=NAS

GO:0016020 "membrane" evidence=NAS

DICTYBASE|DDB_G0278545 fimC "fimbrin-3" [Dictyostelium discoideum (taxid:44689)]

 Score = 131 (51.2 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 40/112 (35%), Positives = 67/112 (59%)

Query:    40 NLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELN 99
             ++ES + I+E    KE ++    L+ IK +  Q+  E DQ+I E +  I E +Q+IKE +
Sbjct:   234 HVESIHSIQELLEVKENQLIEKDLE-IKVKTKQL-HEKDQLILEFESSIIEKDQLIKEKS 291

Query:   100 -LIIKESNQN-KLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149
              LI ++SN   +L+      DQ+++E D  IKE  Q+IK+ +Q I+E  +I+
Sbjct:   292 ELIQRQSNDIIELENTSSTKDQLIREKDDLIKEKQQLIKDRDQTIQEKVEII 343

GO:0051015 "actin filament binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0274241 bre1 "RmlC-like cupin family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 42/133 (31%), Positives = 74/133 (55%)

Query:    29 VTDGSTEESEIN---LESSNGIEEQEMEKECKVDFN-KLDQ--IKKELDQIIKELDQIIK 82
             + +G+ E +  N   + + N I     E + K+ FN +L++  +K EL  + K+L+ I K
Sbjct:   719 IENGNNENNNNNENTINNENTINNNNNENKDKIIFNLELNESKLKLELSTVKKQLEDITK 778

Query:    83 ---ELDLIIKESNQV----IKELNLIIKESNQNKLDQI--KKELDQMVKELDLTIKELNQ 133
                E D  IKE N+     IKEL++ I   +QNK+ Q   K+EL+ +V E+D   K   Q
Sbjct:   779 SKEEYDNEIKEINEKFKAQIKELDITI---SQNKIQQESQKQELEALVMEIDSMGKAYEQ 835

Query:   134 IIKELNQIIKELN 146
             ++++  ++ K+L+
Sbjct:   836 MLEQNTRLTKQLS 848

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

CGD|CAL0001468 SYS3 [Candida albicans (taxid:5476)]

 Score = 120 (47.3 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 47/165 (28%), Positives = 88/165 (53%)

Query:     8 DCLRLRRHYFALFRMFDGL----TPVTDGSTEESEINLESSNGIEEQ------EMEKECK 57
             D  ++ +    + ++F+ +    TPV+  S  E ++ +E  NG+ E+      E+ K  K
Sbjct:   137 DAYKIEKKKNEIIKIFEKVLQENTPVS--SLSEGKLLVEYLNGLNEKTKLLNGEIRKLTK 194

Query:    58 ----VDFN--KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQN-KL 110
                 ++F   KL++  KEL+  +K LD + KE +++ K+ + + +EL +I   +NQN KL
Sbjct:   195 DNNTMNFKIVKLEESNKELNNDVKRLDTMQKEKEVMGKKIDSMSEELEII---NNQNDKL 251

Query:   111 DQIKKELDQMVKELDLTIKELNQIIKELNQII----KELNQIVEE 151
              +  K+ ++ ++ L L I + +  IK+L        KELN  +EE
Sbjct:   252 TKDLKDKEEKIESLKLEITDRDNKIKDLESNTSSNSKELNTELEE 296

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

UNIPROTKB|Q59UF5 SYS3 "Potential GRIP domain Golgi protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 120 (47.3 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 47/165 (28%), Positives = 88/165 (53%)

Query:     8 DCLRLRRHYFALFRMFDGL----TPVTDGSTEESEINLESSNGIEEQ------EMEKECK 57
             D  ++ +    + ++F+ +    TPV+  S  E ++ +E  NG+ E+      E+ K  K
Sbjct:   137 DAYKIEKKKNEIIKIFEKVLQENTPVS--SLSEGKLLVEYLNGLNEKTKLLNGEIRKLTK 194

Query:    58 ----VDFN--KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQN-KL 110
                 ++F   KL++  KEL+  +K LD + KE +++ K+ + + +EL +I   +NQN KL
Sbjct:   195 DNNTMNFKIVKLEESNKELNNDVKRLDTMQKEKEVMGKKIDSMSEELEII---NNQNDKL 251

Query:   111 DQIKKELDQMVKELDLTIKELNQIIKELNQII----KELNQIVEE 151
              +  K+ ++ ++ L L I + +  IK+L        KELN  +EE
Sbjct:   252 TKDLKDKEEKIESLKLEITDRDNKIKDLESNTSSNSKELNTELEE 296

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0270444 DDB_G0270444 "protein kinase, CMGC group" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 45/130 (34%), Positives = 78/130 (60%)

Query:    27 TPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKE-LDQIIKE-- 83
             T V D + + ++ +L S   I+E E++KE  +DF K +QI +E+ + +KE +++ IKE  
Sbjct:   998 TVVYDANIQINQEDLISK--IKENEIQKE--IDF-KENQINEEIKEDVKEEIEEDIKEEI 1052

Query:    84 LDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIK 143
              + I +ES +V +E    IKE  Q +  ++K+E+ +   E+ + IKE  +I +E+ + IK
Sbjct:  1053 KEEIKEESKEVQEEAKEEIKEEIQIETQEVKEEIKE---EVQVEIKE-EKIKEEIKEEIK 1108

Query:   144 ELNQ--IVEE 151
             E  Q  I EE
Sbjct:  1109 EETQEEIKEE 1118

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0275495 cepE "centrosomal protein 91 kDa" [Dictyostelium discoideum (taxid:44689)]

 Score = 118 (46.6 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 33/108 (30%), Positives = 64/108 (59%)

Query:    53 EKECKVDFNKLDQIKKELDQIIKELDQIIK---ELDLIIKESNQVIKELNLIIKESNQNK 109
             E++ K + N++  I ++++Q+  + DQ I+   EL L +KE NQ  KEL   IKE +  K
Sbjct:   487 EQKYKQEINQISVISQDMNQLKLDYDQSIQQSNELSLELKEKNQKTKEL---IKECDDLK 543

Query:   110 L--DQIKKELDQMVKELDLTI----KELNQIIKELNQIIKELNQIVEE 151
             L   Q +++ DQ+  +  + I    K++N + K  ++ I++LN+ +++
Sbjct:   544 LKVSQQQQQFDQLTNKSKMYIEYRDKQINDLTKTTDRQIQQLNEKIQQ 591

GO:0005813 "centrosome" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0001345 orf19.6357 [Candida albicans (taxid:5476)]

 Score = 116 (45.9 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 40/140 (28%), Positives = 72/140 (51%)

Query:    22 MFDGLTPVTDGSTEESEINLESSNGI-EEQEMEKE--CKVDFNKLDQIKKELDQIIKELD 78
             M  G +P  D  +  S I++ +++ I  E  + K    K++F +LD IK E   + +E D
Sbjct:     1 MSTGSSPFVDHKSNNSTISINNNSSILNESSISKAYVSKLEF-QLDTIKTENRILQQEKD 59

Query:    79 QIIKELDLIIKESNQVIKELNLIIK----ESNQ--NKL---DQIK-KELDQMVKELDLTI 128
             QI  +   II E NQ ++ L L  K    E NQ  +KL   +Q+    ++Q+  E+    
Sbjct:    60 QITSDYRKIIDEKNQELENLKLNFKYVYDEKNQLESKLTNQEQVSTNNINQLSDEIQTYK 119

Query:   129 KELNQIIKELNQIIKELNQI 148
             +E  ++ K+ N ++ + N++
Sbjct:   120 RENLKLTKDYNSLLDKFNKL 139

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0044774 "mitotic DNA integrity checkpoint" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

UNIPROTKB|Q59PD6 MAD1 "Putative uncharacterized protein MAD1" [Candida albicans SC5314 (taxid:237561)]

 Score = 116 (45.9 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 40/140 (28%), Positives = 72/140 (51%)

Query:    22 MFDGLTPVTDGSTEESEINLESSNGI-EEQEMEKE--CKVDFNKLDQIKKELDQIIKELD 78
             M  G +P  D  +  S I++ +++ I  E  + K    K++F +LD IK E   + +E D
Sbjct:     1 MSTGSSPFVDHKSNNSTISINNNSSILNESSISKAYVSKLEF-QLDTIKTENRILQQEKD 59

Query:    79 QIIKELDLIIKESNQVIKELNLIIK----ESNQ--NKL---DQIK-KELDQMVKELDLTI 128
             QI  +   II E NQ ++ L L  K    E NQ  +KL   +Q+    ++Q+  E+    
Sbjct:    60 QITSDYRKIIDEKNQELENLKLNFKYVYDEKNQLESKLTNQEQVSTNNINQLSDEIQTYK 119

Query:   129 KELNQIIKELNQIIKELNQI 148
             +E  ++ K+ N ++ + N++
Sbjct:   120 RENLKLTKDYNSLLDKFNKL 139

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8I659 PFB0765w "Uncharacterized protein PFB0765w" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 119 (46.9 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 36/122 (29%), Positives = 70/122 (57%)

Query:    38 EINLESSNGIEEQEMEKECKVDF--NKLDQIKKELDQIIKELDQII----KELDLIIKES 91
             ++NL+S   I+E E   + KV+   N L Q  +EL  II+E D+ I    KE++ I+ + 
Sbjct:   983 DMNLQSQILIKENEKHMQEKVEEYKNLLKQKDQELKNIIQEYDERIEIQNKEMEDIVNDC 1042

Query:    92 NQVIKELNLIIKE--SNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149
              + +K+  +  K+  +  N  +     +D+ +KE D   K++N ++K++ +  +E+N++V
Sbjct:  1043 EEKLKQAKINNKKLTTATNMANNNNMLMDENLKEKD---KKINDLMKDMEKKKEEINKLV 1099

Query:   150 EE 151
             EE
Sbjct:  1100 EE 1101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
pfam03961	450	pfam03961, DUF342, Protein of unknown function (DU	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.003

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 47  IEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN 106
           +EE + E E       L + K+E+ ++  E ++ ++E    +++      E  L+ KE N
Sbjct: 44  LEEAKKEAEAIKK-EALLEAKEEIHKLRNEFEKELRERRNELQK-----LEKRLLQKEEN 97

Query: 107 ----QNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
                  L++ ++EL++  KEL+   +EL +  +EL ++I+E  Q +E 
Sbjct: 98  LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146

Length = 520

>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342)

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 25/99 (25%), Positives = 55/99 (55%), Gaps = 14/99 (14%)

Query: 53  EKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQ 112
           E E  VDF +L +  KEL++ +KEL++ ++++  ++K            + +  + +L  
Sbjct: 322 EIEVGVDFPELKEELKELEEELKELEEELEKIKKLLK-----------KLPKKARGQLPP 370

Query: 113 IKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
            K+E  + + E   T ++L++ ++EL + +KEL + +E 
Sbjct: 371 EKREQLEKLLE---TKEKLSEELEELEEELKELKEELES 406

This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. Length = 450

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 62  KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMV 121
           +L+Q  +E + ++KE +++ +EL+   ++  +   +L    ++  Q  + + KKE D+++
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590

Query: 122 KELDLTIKELNQIIK--ELNQIIKELNQIVEE 151
           KEL    K     +K  EL +  K LN+  E+
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEK 622

Length = 782

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	97.27
smart00283	262	MA Methyl-accepting chemotaxis-like domains (chemo	97.14
smart00283	262	MA Methyl-accepting chemotaxis-like domains (chemo	97.13
PRK11637	428	AmiB activator; Provisional	96.39
COG1463	359	Ttg2C ABC-type transport system involved in resist	96.28
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	96.26
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	95.93
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	95.85
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	95.45
PRK04778	569	septation ring formation regulator EzrA; Provision	95.3
PRK11637	428	AmiB activator; Provisional	95.28
PRK09793	533	methyl-accepting protein IV; Provisional	94.92
KOG2196|consensus	254		94.92
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	94.63
PRK03918	880	chromosome segregation protein; Provisional	94.47
COG0840	408	Tar Methyl-accepting chemotaxis protein [Cell moti	94.17
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.13
PRK10807	547	paraquat-inducible protein B; Provisional	93.57
PLN03094	370	Substrate binding subunit of ER-derived-lipid tran	93.52
COG0840	408	Tar Methyl-accepting chemotaxis protein [Cell moti	93.29
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	92.93
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.9
PF10475	291	DUF2450: Protein of unknown function N-terminal do	92.85
PLN03094	370	Substrate binding subunit of ER-derived-lipid tran	92.85
PF06009	138	Laminin_II: Laminin Domain II; InterPro: IPR010307	92.75
KOG2196|consensus	254		92.33
PF04124	338	Dor1: Dor1-like family ; InterPro: IPR007255 Dor1	92.17
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.88
cd07628	185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	91.68
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.56
PRK01156	895	chromosome segregation protein; Provisional	91.34
TIGR00833	910	actII Transport protein. Characterized members of	91.29
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	91.27
PRK03918	880	chromosome segregation protein; Provisional	91.26
PRK04778	569	septation ring formation regulator EzrA; Provision	91.06
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	91.0
PF06013	86	WXG100: Proteins of 100 residues with WXG; InterPr	90.87
PF06009	138	Laminin_II: Laminin Domain II; InterPro: IPR010307	90.84
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	90.55
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	90.51
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	90.46
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	90.06
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	89.98
PF10475	291	DUF2450: Protein of unknown function N-terminal do	89.9
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	89.7
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	88.77
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.34
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	88.17
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.93
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	87.6
PRK01156	895	chromosome segregation protein; Provisional	87.46
TIGR00833	910	actII Transport protein. Characterized members of	87.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.87
PF10158	131	LOH1CR12: Tumour suppressor protein; InterPro: IPR	86.53
PF02646	304	RmuC: RmuC family; InterPro: IPR003798 This protei	85.98
PRK10869	553	recombination and repair protein; Provisional	85.78
PF00669	139	Flagellin_N: Bacterial flagellin N-terminal helica	85.78
PF07361	103	Cytochrom_B562: Cytochrome b562; InterPro: IPR0091	85.61
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	85.57
PF10157	149	DUF2365: Uncharacterized conserved protein (DUF236	85.46
PRK10869	553	recombination and repair protein; Provisional	85.36
PRK03947	140	prefoldin subunit alpha; Reviewed	85.21
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	85.18
PHA02562	562	46 endonuclease subunit; Provisional	85.18
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	84.79
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	83.9
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	83.75
PRK03947	140	prefoldin subunit alpha; Reviewed	83.6
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	83.46
PF06013	86	WXG100: Proteins of 100 residues with WXG; InterPr	82.31
PF12729	181	4HB_MCP_1: Four helix bundle sensory module for si	82.07
COG3352	157	FlaC Putative archaeal flagellar protein C [Cell m	81.55
KOG0996|consensus	1293		81.55
PRK10807	547	paraquat-inducible protein B; Provisional	81.42
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	81.32
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	81.32
PF05713	48	MobC: Bacterial mobilisation protein (MobC); Inter	80.94
KOG0250|consensus	1074		80.63
PRK02224	880	chromosome segregation protein; Provisional	80.62
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	80.59
PF04124	338	Dor1: Dor1-like family ; InterPro: IPR007255 Dor1	80.21

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=97.27  E-value=0.023  Score=40.94  Aligned_cols=44  Identities=7%  Similarity=0.283  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN  106 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~  106 (151)
                      +..+.+.++...+.+.+..+.|..|...++++...+.+++....
T Consensus       116 ~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~  159 (213)
T PF00015_consen  116 MEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAE  159 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHH
Confidence            33444444444444444444444444444444444444444333

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)

Probab=97.14  E-value=0.037  Score=40.19  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        112 QIKKELDQMVKELDLTIKELNQI  134 (151)
Q Consensus       112 qIsK~Ldqisk~ld~isK~L~qI  134 (151)
                      ++...+.++++.+..+.....++
T Consensus        71 ~~~~~~~~~~~~i~~i~~~~~~i   93 (262)
T smart00283       71 QIREVVEEAVSAVEELEESSDEI   93 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444443333333

Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.

>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)

Probab=97.13  E-value=0.037  Score=40.21  Aligned_cols=71  Identities=6%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIK  136 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk  136 (151)
                      ++..+.+++..+.++...+.+++..+.+++..+.++.....+  ....++.....++...+..+.+.++.|..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~   88 (262)
T smart00283       16 QAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELEE   88 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444444444333333333  33333344444444444444444444433

Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.

>PRK11637 AmiB activator; Provisional

Probab=96.39  E-value=0.14  Score=43.19  Aligned_cols=83  Identities=14%  Similarity=0.192  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIK  143 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K  143 (151)
                      ..+.++++-+.+.+..+.+.+..+.+++..+.++.+.+.+..  ..+..+...|+.+-+.++.+-+.+++.-+.+++-.+
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444433  555556666666666666666666666666665555


Q ss_pred             HHHHh
Q psy18023        144 ELNQI  148 (151)
Q Consensus       144 ~l~q~  148 (151)
                      .|.+.
T Consensus       125 ~l~~r  129 (428)
T PRK11637        125 LLAAQ  129 (428)
T ss_pred             HHHHH
Confidence            55543

>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.28  E-value=0.062  Score=44.75  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHH
Q psy18023         68 KELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELD  125 (151)
Q Consensus        68 KnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld  125 (151)
                      .++.+..+++++|+..|+.=++.+.++++.++++...+.+  ..++++...|....++++
T Consensus       176 ~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~  235 (359)
T COG1463         176 PQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALA  235 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444444444444444444444444444333  333333333333333333

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=96.26  E-value=0.15  Score=34.69  Aligned_cols=36  Identities=33%  Similarity=0.557  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLI  101 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qI  101 (151)
                      +++-|+++.+.++++.++++.+.+..+++.+..+.+
T Consensus        24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l   59 (90)
T PF06103_consen   24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL   59 (90)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=95.93  E-value=0.21  Score=33.86  Aligned_cols=38  Identities=26%  Similarity=0.532  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18023         70 LDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ  107 (151)
Q Consensus        70 LdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q  107 (151)
                      |-.+.+-|+++.+.++.+.+.++.+.+..+++.++.+.
T Consensus        21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~   58 (90)
T PF06103_consen   21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNE   58 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555554443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=95.85  E-value=0.17  Score=38.75  Aligned_cols=18  Identities=28%  Similarity=0.222  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy18023         89 KESNQVIKELNLIIKESN  106 (151)
Q Consensus        89 K~l~QiSk~L~qISKel~  106 (151)
                      |+|+|+|++|..--|||+
T Consensus        50 kql~~vs~~l~~tKkhLs   67 (126)
T PF07889_consen   50 KQLEQVSESLSSTKKHLS   67 (126)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

The region featured in this family is approximately 100 amino acids long.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=95.45  E-value=0.53  Score=40.75  Aligned_cols=80  Identities=25%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhh-------------hhhHHHHHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK---ESNQ-------------NKLDQIKKELDQMVKELDL  126 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK---el~q-------------k~LdqIsK~Ldqisk~ld~  126 (151)
                      ++|..++...|++.+..-...|+.+.   ++|++.|+.|++   .+|+             ..|.++.+...+.+..+..
T Consensus       222 leqm~~~~~~I~~~~~~~~~~L~kl~---~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~  298 (359)
T PF10498_consen  222 LEQMKQHKKSIESALPETKSQLDKLQ---QDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE  298 (359)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            45555555555555544444444333   234455555542   2332             3344444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy18023        127 TIKELNQIIKELNQIIKEL  145 (151)
Q Consensus       127 isK~L~qIsk~l~qI~K~l  145 (151)
                      -..+|++|+..|.++..++
T Consensus       299 ~t~~L~~IseeLe~vK~em  317 (359)
T PF10498_consen  299 RTRELAEISEELEQVKQEM  317 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.30  E-value=0.52  Score=41.75  Aligned_cols=91  Identities=18%  Similarity=0.300  Sum_probs=51.8

Q ss_pred             hhhhccccchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Q psy18023         54 KECKVDFNKLDQIKKELDQIIKELDQIIKE----------LDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMV  121 (151)
Q Consensus        54 ~~~~~~~~~LDQIsKnLdQISK~LdQIsK~----------LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqis  121 (151)
                      +....=...+..+.++..+....++.++.+          ..++.+.++.+.+.+..+....+.  .....+.+.++.+.
T Consensus       310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~  389 (569)
T PRK04778        310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEIL  389 (569)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            333333445555666666666666666665          555555566666666655555554  33555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        122 KELDLTIKELNQIIKELNQIIKE  144 (151)
Q Consensus       122 k~ld~isK~L~qIsk~l~qI~K~  144 (151)
                      +.++.+-+....|...++.+++.
T Consensus       390 e~leeie~eq~ei~e~l~~Lrk~  412 (569)
T PRK04778        390 KQLEEIEKEQEKLSEMLQGLRKD  412 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655555555555543

>PRK11637 AmiB activator; Provisional

Probab=95.28  E-value=0.68  Score=39.12  Aligned_cols=83  Identities=12%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIKELN  139 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~  139 (151)
                      .++++.+.+.+..+.+.+..+.++...+.++.+.+.|....+.++.  ..+..+.+.+++.-+.++..-+.|++--+.+.
T Consensus        48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666666666666666666666666666666666666655  55666666666666666665555555555554


Q ss_pred             HHHHH
Q psy18023        140 QIIKE  144 (151)
Q Consensus       140 qI~K~  144 (151)
                      +....
T Consensus       128 ~rlra  132 (428)
T PRK11637        128 AQLDA  132 (428)
T ss_pred             HHHHH
Confidence            44433

>PRK09793 methyl-accepting protein IV; Provisional

Probab=94.92  E-value=1.2  Score=38.12  Aligned_cols=15  Identities=13%  Similarity=0.153  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHh
Q psy18023        134 IIKELNQIIKELNQI  148 (151)
Q Consensus       134 Isk~l~qI~K~l~q~  148 (151)
                      .+..|.+....|.+.
T Consensus       493 ~~~~l~~~a~~l~~~  507 (533)
T PRK09793        493 ATEQLANQADHLSSR  507 (533)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444433

>KOG2196|consensus

Probab=94.92  E-value=0.23  Score=42.55  Aligned_cols=73  Identities=27%  Similarity=0.326  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         72 QIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ-NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKE  144 (151)
Q Consensus        72 QISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q-k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~  144 (151)
                      |+.+-++.|..-|+..+..|.+|+++|+..+|-.+- +-+.||-|-|.-+-+.|.-+-.--.|+.|.++.|-|.
T Consensus       175 qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~  248 (254)
T KOG2196|consen  175 QTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKL  248 (254)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            455555666666666666666666666666665444 5577777777666666655555556666777776553

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=94.63  E-value=1.5  Score=33.54  Aligned_cols=37  Identities=14%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023        112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI  148 (151)
Q Consensus       112 qIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~  148 (151)
                      +|.+.+..+...+++|-..++.|-..+..+--+++.|
T Consensus        86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i  122 (126)
T PF07889_consen   86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI  122 (126)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555443

The region featured in this family is approximately 100 amino acids long.

>PRK03918 chromosome segregation protein; Provisional

Probab=94.47  E-value=1.2  Score=39.71  Aligned_cols=83  Identities=25%  Similarity=0.358  Sum_probs=42.3

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         59 DFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKEL  138 (151)
Q Consensus        59 ~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l  138 (151)
                      ..+.+..+...+..+.+.++...+.+..+.+.++++.+.++.+.+..+...+.++.+.++.+.+.+..+...+..+-+.+
T Consensus       610 ~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i  689 (880)
T PRK03918        610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR  689 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555666666666666666666666666666666555334444444444444444444444443333333333


Q ss_pred             HHH
Q psy18023        139 NQI  141 (151)
Q Consensus       139 ~qI  141 (151)
                      ..+
T Consensus       690 ~~l  692 (880)
T PRK03918        690 EEI  692 (880)
T ss_pred             HHH
Confidence            333

>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.17  E-value=2.3  Score=33.71  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy18023        129 KELNQIIKELNQIIKELNQIV  149 (151)
Q Consensus       129 K~L~qIsk~l~qI~K~l~q~~  149 (151)
                      .++...+..|.+....|.+.|
T Consensus       383 ~~~~~~~~~l~~~~~~l~~~v  403 (408)
T COG0840         383 EELAAASEELKELAEKLLELV  403 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555544

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.13  E-value=2.3  Score=33.63  Aligned_cols=41  Identities=22%  Similarity=0.417  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023        110 LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVE  150 (151)
Q Consensus       110 LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~~  150 (151)
                      +++..+.++++.+.++.+.+...++.-.+.+..+.|.+.|+
T Consensus        79 v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~  119 (251)
T PF11932_consen   79 VASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444555544444555555555566655554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK10807 paraquat-inducible protein B; Provisional

Probab=93.57  E-value=1.7  Score=39.22  Aligned_cols=21  Identities=33%  Similarity=0.770  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy18023        127 TIKELNQIIKELNQIIKELNQ  147 (151)
Q Consensus       127 isK~L~qIsk~l~qI~K~l~q  147 (151)
                      +.++|++..+.|....+.|++
T Consensus       505 tl~~l~~~~r~lr~l~~~L~~  525 (547)
T PRK10807        505 DMQRLDQVLRELQPVLKTLNE  525 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555543

>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional

Probab=93.52  E-value=1.6  Score=38.30  Aligned_cols=47  Identities=9%  Similarity=0.060  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         92 NQVIKELNLIIKESNQ-NKLDQIKKELDQMVKELDLTIKELNQIIKEL  138 (151)
Q Consensus        92 ~QiSk~L~qISKel~q-k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l  138 (151)
                      ++-+..+.+++..++. .-+.++.+.++....++..+.+-..|+..-+
T Consensus       303 A~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft  350 (370)
T PLN03094        303 AEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFT  350 (370)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444333 2333334444434333333333333333333

>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]

Probab=93.29  E-value=3.4  Score=32.78  Aligned_cols=16  Identities=6%  Similarity=0.214  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy18023         83 ELDLIIKESNQVIKEL   98 (151)
Q Consensus        83 ~LdqISK~l~QiSk~L   98 (151)
                      .+.++...+++++...
T Consensus       167 ~~~~~~~~~~~~~~~~  182 (408)
T COG0840         167 SLEEVASAIEELSETV  182 (408)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=92.93  E-value=1.6  Score=28.19  Aligned_cols=58  Identities=22%  Similarity=0.465  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy18023         72 QIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKEL  131 (151)
Q Consensus        72 QISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L  131 (151)
                      +|-...+.|...|+.|...++++.+--..+.-..++.  .+.+++|+.+....-.....+
T Consensus         4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~   61 (103)
T PF00804_consen    4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKI   61 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333333222211  345555555544444433333

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.90  E-value=2.4  Score=36.81  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy18023        129 KELNQIIKELNQIIKELNQI  148 (151)
Q Consensus       129 K~L~qIsk~l~qI~K~l~q~  148 (151)
                      .....-.++|++|..+|+++
T Consensus       294 ~~V~~~t~~L~~IseeLe~v  313 (359)
T PF10498_consen  294 EGVSERTRELAEISEELEQV  313 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555555544

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=92.85  E-value=4.4  Score=32.87  Aligned_cols=52  Identities=21%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             HHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy18023         50 QEMEKECKVDFNKLDQIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLII  102 (151)
Q Consensus        50 ~~~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qIS  102 (151)
                      -+.++-|..+ ...++|.+..+.+|-.||-+++.| .+|++..+...++|..+.
T Consensus        18 ~~L~~l~~~~-~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~   70 (291)
T PF10475_consen   18 YELEKLPEDE-LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQ   70 (291)
T ss_pred             HHHHhCCCcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665 445667777777777777777776 356666666666655443

>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional

Probab=92.85  E-value=1.8  Score=37.92  Aligned_cols=14  Identities=14%  Similarity=0.299  Sum_probs=6.2

Q ss_pred             chHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIK   75 (151)
Q Consensus        62 ~LDQIsKnLdQISK   75 (151)
                      ++|++-..|.+++.
T Consensus       228 sld~L~~~ltrL~~  241 (370)
T PLN03094        228 SLDELVGICTRLAR  241 (370)
T ss_pred             CHHHHHHHHHHHHH
Confidence            44444444444444

>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []

Probab=92.75  E-value=0.032  Score=41.28  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE  104 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe  104 (151)
                      .++.|+++|+.++..+.++..+++.+.+.+.+..+.+++..+.
T Consensus        18 ~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~   60 (138)
T PF06009_consen   18 RLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNS   60 (138)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666655555555555554444444444444433

; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.

>KOG2196|consensus

Probab=92.33  E-value=0.69  Score=39.74  Aligned_cols=62  Identities=29%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHH
Q psy18023         68 KELDQIIKELDQIIKELDLIIKESNQVIKE------LNLIIKESNQ--NKLDQIKKELDQMVKELDLTIK  129 (151)
Q Consensus        68 KnLdQISK~LdQIsK~LdqISK~l~QiSk~------L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK  129 (151)
                      +-++.|-..|.+.+-+|++|+++||..++.      ..||.|-|+-  ++|.-|-.--.|+.|.++.|-|
T Consensus       178 ~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K  247 (254)
T KOG2196|consen  178 KMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKK  247 (254)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            333333344444444444444444444332      4456666655  4443333333445555555443

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 []

Probab=92.17  E-value=1.9  Score=35.67  Aligned_cols=26  Identities=15%  Similarity=0.290  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLII   88 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqIS   88 (151)
                      ++...++-..+.++.+.+...+..+.
T Consensus         9 l~~L~~Ep~~L~~~~~~l~~ql~~La   34 (338)
T PF04124_consen    9 LESLFSEPQSLSEEIASLDAQLQSLA   34 (338)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.88  E-value=1.9  Score=38.98  Aligned_cols=67  Identities=16%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHH
Q psy18023         61 NKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLT  127 (151)
Q Consensus        61 ~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~i  127 (151)
                      +-|+|+.+++.+.++.+....+...+.-+.+.+.-+.++++...+.+  ..|+.+++.++++-+.+..+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l  106 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL  106 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            34556666666666666666666666655555555555555555444  44444444444444444333

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p

Probab=91.68  E-value=4.5  Score=31.26  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=25.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE  104 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe  104 (151)
                      .++.+..+|..+.|....+.|....++.++.+.+..+..|+..
T Consensus        12 ~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~   54 (185)
T cd07628          12 KSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSL   54 (185)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455566666666666666666666666666666666655543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.59  E-value=4  Score=36.92  Aligned_cols=68  Identities=22%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         68 KELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQ  140 (151)
Q Consensus        68 KnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~q  140 (151)
                      ++|+|+-+++++.++.+....+...+.-+.|.+.-+++     .+|...|-+...+++.+.+.++++-+.+++
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i-----~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~  105 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI-----ASLEAQLIETADDLKKLRKQIADLNARLNA  105 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            66666666666666666666555555554444443333     334444444444444444444444333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.56  E-value=0.9  Score=42.46  Aligned_cols=73  Identities=23%  Similarity=0.346  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK-------ESNQNKLDQIKKELDQMVKELDLTIKELNQIIKEL  138 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK-------el~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l  138 (151)
                      ++++|+.+...+.+....++++.+-++.--.+++ ..+       .+..+....|+.-|.++..+++..+|.++.|.+++
T Consensus       637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444555555555555555555555543222333 111       23335677788888888888877777777777765


Q ss_pred             H
Q psy18023        139 N  139 (151)
Q Consensus       139 ~  139 (151)
                      +
T Consensus       716 ~  716 (717)
T PF10168_consen  716 N  716 (717)
T ss_pred             C
Confidence            3

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK01156 chromosome segregation protein; Provisional

Probab=91.34  E-value=5.3  Score=36.44  Aligned_cols=36  Identities=11%  Similarity=0.367  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        110 LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL  145 (151)
Q Consensus       110 LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l  145 (151)
                      +.+|++.++++.+.++.+-..+.++-+.++++.+.+
T Consensus       411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~  446 (895)
T PRK01156        411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSRNM  446 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555544433

>TIGR00833 actII Transport protein

Probab=91.29  E-value=5.6  Score=37.25  Aligned_cols=13  Identities=38%  Similarity=0.386  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHhcC
Q psy18023         13 RRHYFALFRMFDG   25 (151)
Q Consensus        13 ~~~~~~~~~~~~~   25 (151)
                      |+.|..+-+-|.|
T Consensus       399 ~~~~~~l~~~f~~  411 (910)
T TIGR00833       399 VQGYEAADRHFPG  411 (910)
T ss_pred             HHHHHHHHHhCCC
Confidence            4444444444443

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=91.27  E-value=7  Score=34.96  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         89 KESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIK  143 (151)
Q Consensus        89 K~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K  143 (151)
                      +.+.++.+.++.+...+.+  ..-.+|...|..+.+.|+.|.+....+...|+.+++
T Consensus       351 ~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~  407 (560)
T PF06160_consen  351 KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK  407 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444  223344444444444444444444444444444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK03918 chromosome segregation protein; Provisional

Probab=91.26  E-value=8  Score=34.63  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         79 QIIKELDLIIKESNQVIKELNLI  101 (151)
Q Consensus        79 QIsK~LdqISK~l~QiSk~L~qI  101 (151)
                      .+.+.+..+.+.++.....+..+
T Consensus       204 ~l~~ei~~l~~e~~~l~~~~~~~  226 (880)
T PRK03918        204 EVLREINEISSELPELREELEKL  226 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.06  E-value=4.5  Score=35.95  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        120 MVKELDLTIKELNQIIKELNQIIKELN  146 (151)
Q Consensus       120 isk~ld~isK~L~qIsk~l~qI~K~l~  146 (151)
                      +...++.+.+.|++|-+....|...++
T Consensus       381 l~e~leel~e~leeie~eq~ei~e~l~  407 (569)
T PRK04778        381 LQEELEEILKQLEEIEKEQEKLSEMLQ  407 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=91.00  E-value=4.4  Score=36.21  Aligned_cols=18  Identities=11%  Similarity=0.298  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy18023        129 KELNQIIKELNQIIKELN  146 (151)
Q Consensus       129 K~L~qIsk~l~qI~K~l~  146 (151)
                      +.|..+...++....+.+
T Consensus       472 ~~l~~a~~~v~~L~~~t~  489 (560)
T PF06160_consen  472 KQLEEAEDDVETLEEKTE  489 (560)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis

Probab=90.87  E-value=2.5  Score=25.93  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         57 KVDFNKLDQIKKELDQIIKELDQIIKELDLIIKE   90 (151)
Q Consensus        57 ~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~   90 (151)
                      +||+..|.+..+.+......|......|......
T Consensus         3 ~vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~   36 (86)
T PF06013_consen    3 KVDPEQLRAAAQQLQAQADELQSQLQQLESSIDS   36 (86)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677766666666666655555554444443333

Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....

>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []

Probab=90.84  E-value=0.07  Score=39.48  Aligned_cols=9  Identities=11%  Similarity=0.423  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q psy18023        134 IIKELNQII  142 (151)
Q Consensus       134 Isk~l~qI~  142 (151)
                      |++-+.+|+
T Consensus        88 ls~nI~~Ir   96 (138)
T PF06009_consen   88 LSRNISRIR   96 (138)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            333333333

; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=90.55  E-value=3.3  Score=26.77  Aligned_cols=17  Identities=24%  Similarity=0.665  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy18023         65 QIKKELDQIIKELDQII   81 (151)
Q Consensus        65 QIsKnLdQISK~LdQIs   81 (151)
                      +|...|+.|...+++|.
T Consensus        11 ~i~~~i~~i~~~~~~l~   27 (103)
T PF00804_consen   11 EIREDIDKIKEKLNELR   27 (103)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=90.51  E-value=4.1  Score=27.78  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel  105 (151)
                      +.+.+..|.+....+...+...+......+++|..+++..
T Consensus         5 ~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~   44 (194)
T cd07307           5 LEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKEL   44 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3344444444444444444444444444444444444444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=90.46  E-value=6  Score=29.67  Aligned_cols=44  Identities=14%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023         61 NKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE  104 (151)
Q Consensus        61 ~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe  104 (151)
                      +.++.+..+|..+.+.+..+.+....+...+.+.+..+..|+..
T Consensus        31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~   74 (236)
T PF09325_consen   31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS   74 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45677788888888888888888888888888888888888765

This is the C-terminal dimerisation domain [].

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=90.06  E-value=5  Score=28.46  Aligned_cols=19  Identities=21%  Similarity=0.567  Sum_probs=7.2

Q ss_pred             cccchHHHHHHHHHHHHHH
Q psy18023         59 DFNKLDQIKKELDQIIKEL   77 (151)
Q Consensus        59 ~~~~LDQIsKnLdQISK~L   77 (151)
                      .+.+|.++-.++....+.|
T Consensus        36 kY~~~~~~~~~l~~~~~~l   54 (99)
T PF10046_consen   36 KYKKMKDIAAGLEKNLEDL   54 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444333333333333

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=89.98  E-value=7.5  Score=32.86  Aligned_cols=24  Identities=33%  Similarity=0.648  Sum_probs=13.5

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHH
Q psy18023         59 DFNKLDQIKKELDQIIKELDQIIK   82 (151)
Q Consensus        59 ~~~~LDQIsKnLdQISK~LdQIsK   82 (151)
                      +-++||+|...|..+.+.|+++.+
T Consensus       259 ~~~~Ld~i~~rl~~L~~~~~~l~~  282 (388)
T PF04912_consen  259 DPAKLDSIERRLKSLLSELEELAE  282 (388)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445556666666655555555543

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=89.90  E-value=4.8  Score=32.63  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy18023         65 QIKKELDQIIKEL-DQIIKELDLIIKESNQ   93 (151)
Q Consensus        65 QIsKnLdQISK~L-dQIsK~LdqISK~l~Q   93 (151)
                      .++-.||-+++.| .+|++.=+.+.++|..
T Consensus        39 kLs~~ldvVe~~L~~~I~~~s~~f~~a~~~   68 (291)
T PF10475_consen   39 KLSHYLDVVEKKLSREISEKSDSFFQAMSS   68 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443 2334444444444433

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=89.70  E-value=7  Score=29.33  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18023         64 DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ  107 (151)
Q Consensus        64 DQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q  107 (151)
                      .+++..++.+...|..+.+.+..+.++...+...+.+.+..++.
T Consensus        27 ~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~   70 (236)
T PF09325_consen   27 EEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQ   70 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666

This is the C-terminal dimerisation domain [].

>TIGR00634 recN DNA repair protein RecN

Probab=88.77  E-value=7.7  Score=34.24  Aligned_cols=11  Identities=36%  Similarity=0.715  Sum_probs=4.3

Q ss_pred             hHHHHHHHHHH
Q psy18023        110 LDQIKKELDQM  120 (151)
Q Consensus       110 LdqIsK~Ldqi  120 (151)
                      |+.+...|+.+
T Consensus       303 L~ele~RL~~l  313 (563)
T TIGR00634       303 LNEIEERLAQI  313 (563)
T ss_pred             HHHHHHHHHHH
Confidence            34444333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.34  E-value=11  Score=29.83  Aligned_cols=31  Identities=19%  Similarity=0.412  Sum_probs=12.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        108 NKLDQIKKELDQMVKELDLTIKELNQIIKEL  138 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l  138 (151)
                      +.+.++...++++.++-..+.-.+.+....|
T Consensus        84 ~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L  114 (251)
T PF11932_consen   84 QELASLEQQIEQIEETRQELVPLMEQMIDEL  114 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444433333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=88.17  E-value=7.3  Score=27.54  Aligned_cols=46  Identities=15%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q psy18023         61 NKLDQIKKELDQIIKELDQIIKELDLIIKES---NQVIKELNLIIKESN  106 (151)
Q Consensus        61 ~~LDQIsKnLdQISK~LdQIsK~LdqISK~l---~QiSk~L~qISKel~  106 (151)
                      +..+.|+.+|.+|...+++|.+-..++-...   ..+.+.|+.+..+.+
T Consensus         6 ~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~   54 (151)
T cd00179           6 EEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIK   54 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            3345555566666555555555444443332   234444554444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.93  E-value=14  Score=30.63  Aligned_cols=38  Identities=24%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL  145 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l  145 (151)
                      ..|..++.+|.+....+...-+.|++.-.++..+..++
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i  246 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI  246 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666655555555555555444443

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=87.60  E-value=8.7  Score=27.75  Aligned_cols=45  Identities=13%  Similarity=0.165  Sum_probs=30.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN  106 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~  106 (151)
                      .++++..+|..+++.++.+.|.-..++..+..+...+..++..-.
T Consensus        12 ~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~   56 (218)
T cd07596          12 YILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEE   56 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            345566666666777777777777777777777777777776543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PRK01156 chromosome segregation protein; Provisional

Probab=87.46  E-value=14  Score=33.68  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        113 IKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ  147 (151)
Q Consensus       113 IsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q  147 (151)
                      |.+.+.++.+.++.+.+.+..+-....++.+.+++
T Consensus       407 ~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~e  441 (895)
T PRK01156        407 IKKELNEINVKLQDISSKVSSLNQRIRALRENLDE  441 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555444

>TIGR00833 actII Transport protein

Probab=87.02  E-value=21  Score=33.51  Aligned_cols=16  Identities=19%  Similarity=0.270  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy18023        131 LNQIIKELNQIIKELN  146 (151)
Q Consensus       131 L~qIsk~l~qI~K~l~  146 (151)
                      |+...+.++++.+.+.
T Consensus       609 ~~~~~~~~~~~~~~~~  624 (910)
T TIGR00833       609 VSGLPNALDGIGTQLA  624 (910)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3333334444444443

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.87  E-value=5.6  Score=37.34  Aligned_cols=15  Identities=27%  Similarity=0.585  Sum_probs=8.9

Q ss_pred             chhHHHHHHHHHHHH
Q psy18023          7 HDCLRLRRHYFALFR   21 (151)
Q Consensus         7 ~~~~~~~~~~~~~~~   21 (151)
                      .+|+++=.+++..||
T Consensus       535 ~E~l~lL~~a~~vlr  549 (717)
T PF10168_consen  535 QECLELLSQATKVLR  549 (717)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            456666555555555

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []

Probab=86.53  E-value=12  Score=28.46  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        117 LDQMVKELDLTIKELNQIIKELNQ  140 (151)
Q Consensus       117 Ldqisk~ld~isK~L~qIsk~l~q  140 (151)
                      ++.|+.+|..+...|++++-.++.
T Consensus        89 v~els~~L~~~~~lL~~~v~~ie~  112 (131)
T PF10158_consen   89 VNELSQQLSRCQSLLNQTVPSIET  112 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555544443

The exact function of these proteins is not known.

>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins

Probab=85.98  E-value=8.1  Score=31.96  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         67 KKELDQIIKELDQIIKELDLIIKESNQVIKELNL  100 (151)
Q Consensus        67 sKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~q  100 (151)
                      .+|-..|.+.+..+-+.+.-+.++++.+.++|+.
T Consensus       232 ~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~  265 (304)
T PF02646_consen  232 NKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDK  265 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444433333333

The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].

>PRK10869 recombination and repair protein; Provisional

Probab=85.78  E-value=21  Score=31.97  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=17.7

Q ss_pred             HHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         50 QEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLI   87 (151)
Q Consensus        50 ~~~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqI   87 (151)
                      ..+++-+..| +++..+...|.++.-.|+++..+|...
T Consensus       251 ~~l~~~~~~d-~~~~~~~~~l~~~~~~l~~~~~~l~~~  287 (553)
T PRK10869        251 QLLSELIGMD-SKLSGVLDMLEEALIQIQEASDELRHY  287 (553)
T ss_pred             HHHHHHhhhC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444 344455555555555555554444433

>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []

Probab=85.78  E-value=9.9  Score=26.61  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         57 KVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNL  100 (151)
Q Consensus        57 ~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~q  100 (151)
                      +.+.+.++++.+|++....-|+.-...|..|+..+.++.+.+.+
T Consensus        51 ~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~~~~~~~   94 (139)
T PF00669_consen   51 RSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRARELAVQ   94 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566788888888888888888888888888887776665443

They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.

>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli

Probab=85.61  E-value=11  Score=27.08  Aligned_cols=11  Identities=36%  Similarity=0.628  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q psy18023        134 IIKELNQIIKE  144 (151)
Q Consensus       134 Isk~l~qI~K~  144 (151)
                      ..+.|+++|++
T Consensus        87 ~l~~l~~lR~e   97 (103)
T PF07361_consen   87 ALKKLDDLRKE   97 (103)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444443

In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....

>smart00503 SynN Syntaxin N-terminal domain

Probab=85.57  E-value=8.8  Score=25.81  Aligned_cols=22  Identities=14%  Similarity=0.406  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy18023         64 DQIKKELDQIIKELDQIIKELD   85 (151)
Q Consensus        64 DQIsKnLdQISK~LdQIsK~Ld   85 (151)
                      +.|+.++.+|..++.+|.+-..
T Consensus        11 ~~I~~~I~~i~~~v~~l~~l~~   32 (117)
T smart00503       11 EEIRANIQKISQNVAELQKLHE   32 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444333

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function

Probab=85.46  E-value=16  Score=28.64  Aligned_cols=91  Identities=15%  Similarity=0.295  Sum_probs=61.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHH---HHHH
Q psy18023         58 VDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLT---IKEL  131 (151)
Q Consensus        58 ~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~i---sK~L  131 (151)
                      ||++-|..+.++-.+++.+++..-.+|...-..|-.++-+.-+.-+....   ..+|.=-|..-++......+   -|.+
T Consensus        49 id~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v  128 (149)
T PF10157_consen   49 IDPAVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPV  128 (149)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999988888877766666666555555555444   45555556555554433333   4445


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy18023        132 NQIIKELNQIIKELNQI  148 (151)
Q Consensus       132 ~qIsk~l~qI~K~l~q~  148 (151)
                      ..+.+.+.+|+|.||.+
T Consensus       129 ~~La~qIK~Ik~~lD~l  145 (149)
T PF10157_consen  129 YKLAQQIKDIKKLLDLL  145 (149)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55666677777777653

>PRK10869 recombination and repair protein; Provisional

Probab=85.36  E-value=7.1  Score=34.96  Aligned_cols=15  Identities=20%  Similarity=0.578  Sum_probs=8.1

Q ss_pred             hhhHHHHHHHHHHHH
Q psy18023        108 NKLDQIKKELDQMVK  122 (151)
Q Consensus       108 k~LdqIsK~Ldqisk  122 (151)
                      ..|+.|..-|+.|.+
T Consensus       296 ~~l~~ie~Rl~~l~~  310 (553)
T PRK10869        296 NRLAELEQRLSKQIS  310 (553)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666555555443

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=85.21  E-value=12  Score=27.05  Aligned_cols=40  Identities=20%  Similarity=0.405  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023        110 LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV  149 (151)
Q Consensus       110 LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~  149 (151)
                      ++-+.+.++.+.+.++.+.+.|+.+.+.+++|...+.++.
T Consensus        96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  135 (140)
T PRK03947         96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ  135 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666666666666654

>TIGR00606 rad50 rad50

Probab=85.18  E-value=35  Score=33.34  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=18.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        109 KLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELN  146 (151)
Q Consensus       109 ~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~  146 (151)
                      .|.++...|..+.++++.+-..+..+...++.++++++
T Consensus       971 qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~ 1008 (1311)
T TIGR00606       971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDID 1008 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444554444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.18  E-value=22  Score=30.09  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        112 QIKKELDQMVKELDLTIKELNQIIKELNQ  140 (151)
Q Consensus       112 qIsK~Ldqisk~ld~isK~L~qIsk~l~q  140 (151)
                      .+..++..+..........|.++...|+.
T Consensus       362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~  390 (562)
T PHA02562        362 KVKAAIEELQAEFVDNAEELAKLQDELDK  390 (562)
T ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>TIGR00606 rad50 rad50

Probab=84.79  E-value=26  Score=34.21  Aligned_cols=41  Identities=15%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023        108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI  148 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~  148 (151)
                      ..+++|...++...+.++.+.+.++.+.....+..++++++
T Consensus       822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666555555555555555444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=83.90  E-value=28  Score=30.32  Aligned_cols=80  Identities=19%  Similarity=0.388  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIKELN  139 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~  139 (151)
                      -.|.+.+....|.+.+..++-....+...|....+..|.+-|..+-  ..+.+.++..+.....+..+.+.|.++-+.+.
T Consensus       166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik  245 (294)
T COG1340         166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK  245 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555554  44455555555555555555555555544444


Q ss_pred             HH
Q psy18023        140 QI  141 (151)
Q Consensus       140 qI  141 (151)
                      .+
T Consensus       246 ~l  247 (294)
T COG1340         246 AL  247 (294)
T ss_pred             HH
Confidence            33

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=83.75  E-value=15  Score=28.93  Aligned_cols=44  Identities=27%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18023         64 DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ  107 (151)
Q Consensus        64 DQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q  107 (151)
                      +-|...-+||-.--++.-++.+.+-+.|+++-..+.+++++.+.
T Consensus         9 ~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~   52 (159)
T PF05384_consen    9 DTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDK   52 (159)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=83.60  E-value=14  Score=26.65  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=16.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIK  143 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K  143 (151)
                      +.++.+.+.++.+.+.++.+.+.+++|...+.++.+
T Consensus       101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~  136 (140)
T PRK03947        101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ  136 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=83.46  E-value=12  Score=25.73  Aligned_cols=40  Identities=23%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023        110 LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV  149 (151)
Q Consensus       110 LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~  149 (151)
                      .+-+.+.++.+.+.++.+.+.+..+.+.++++...+.++.
T Consensus        89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~  128 (129)
T cd00890          89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ  128 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4456666777777778888888888888888888777754

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis

Probab=82.31  E-value=9  Score=23.40  Aligned_cols=30  Identities=10%  Similarity=0.230  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        115 KELDQMVKELDLTIKELNQIIKELNQIIKE  144 (151)
Q Consensus       115 K~Ldqisk~ld~isK~L~qIsk~l~qI~K~  144 (151)
                      ....++...+..+...|.++.+.|..+...
T Consensus        51 ~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~   80 (86)
T PF06013_consen   51 DKFEEWNQAFRQLNEALEELSQALRQAAQN   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444454444444433

Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....

>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain

Probab=82.07  E-value=12  Score=24.87  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         60 FNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK  103 (151)
Q Consensus        60 ~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK  103 (151)
                      +.+|.++..+++.+..+--.-...+.++...+..+...+-.+.-
T Consensus        27 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (181)
T PF12729_consen   27 LYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRALRRYLL   70 (181)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34555555555555554444444455555555555444444433

The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].

>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]

Probab=81.55  E-value=12  Score=30.37  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023         55 ECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        55 ~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel  105 (151)
                      +-+.|-.-+|+|-.-|+.|+-.|-.+.-.++-++|.+..+-++|+.+-+..
T Consensus        38 e~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~i   88 (157)
T COG3352          38 ENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENI   88 (157)
T ss_pred             ccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHH
Confidence            345566667777777777777777666666666777766666666554443

>KOG0996|consensus

Probab=81.55  E-value=27  Score=36.03  Aligned_cols=62  Identities=29%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQ----IIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---------NKLDQIKKELDQMVKE  123 (151)
Q Consensus        62 ~LDQIsKnLdQ----ISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---------k~LdqIsK~Ldqisk~  123 (151)
                      .||.+...++|    +++....+.|.|..|++.+++.-..++--.-+|..         +.++..++.|.+++.+
T Consensus       462 ~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~  536 (1293)
T KOG0996|consen  462 ELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSES  536 (1293)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443    44455555566666665555544333332222221         4555555555554443

>PRK10807 paraquat-inducible protein B; Provisional

Probab=81.42  E-value=21  Score=32.29  Aligned_cols=17  Identities=24%  Similarity=0.454  Sum_probs=8.0

Q ss_pred             cchHHHHHHHHHHHHHH
Q psy18023         61 NKLDQIKKELDQIIKEL   77 (151)
Q Consensus        61 ~~LDQIsKnLdQISK~L   77 (151)
                      +.++++.+.+.+|-..+
T Consensus       413 s~l~~l~~~~~~il~ki  429 (547)
T PRK10807        413 GGLAQIQQKLMEALDKI  429 (547)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            44555555544444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=81.32  E-value=41  Score=32.51  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         70 LDQIIKELDQIIKELDLIIKESNQVIKELNLII  102 (151)
Q Consensus        70 LdQISK~LdQIsK~LdqISK~l~QiSk~L~qIS  102 (151)
                      +.++-+++++..+.++...+........+..+.
T Consensus       248 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~  280 (1163)
T COG1196         248 LSRLEEELEELQEELEEAEKEIEELKSELEELR  280 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=81.32  E-value=10  Score=23.48  Aligned_cols=54  Identities=24%  Similarity=0.332  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         83 ELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIK  136 (151)
Q Consensus        83 ~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk  136 (151)
                      .|+.|+..+..+-.-..+|.-++..  .-||.|....+.....|....++|....+
T Consensus         5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~   60 (63)
T PF05739_consen    5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444445444  55666666666666666666655555443

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins

Probab=80.94  E-value=4.1  Score=25.37  Aligned_cols=12  Identities=42%  Similarity=0.551  Sum_probs=4.9

Q ss_pred             HHHHHHHHhhhh
Q psy18023         96 KELNLIIKESNQ  107 (151)
Q Consensus        96 k~L~qISKel~q  107 (151)
                      --|+||.|.++.
T Consensus        10 nNlNQiAk~~N~   21 (48)
T PF05713_consen   10 NNLNQIAKHANS   21 (48)
T ss_pred             ccHHHHHHHHhC
Confidence            334444444443

MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].

>KOG0250|consensus

Probab=80.63  E-value=36  Score=34.47  Aligned_cols=66  Identities=20%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             hccccccCChhHHHHh-----hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         38 EINLESSNGIEEQEME-----KECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK  103 (151)
Q Consensus        38 ~~~~~~~~~~~~~~~~-----~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK  103 (151)
                      -++-.+.++|+.-++|     ++-..=-|-.++.+++|+-+-+.|.+++.+.-|+-+.+..+--.|++.--
T Consensus       654 ~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  654 VDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444556677655443     33334456677888888888888888888877777777777777776654

>PRK02224 chromosome segregation protein; Provisional

Probab=80.62  E-value=44  Score=30.29  Aligned_cols=44  Identities=9%  Similarity=0.247  Sum_probs=18.7

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         97 ELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQ  140 (151)
Q Consensus        97 ~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~q  140 (151)
                      .++.+-..++...+.++...+.+..+.++.+...|..+-..++.
T Consensus       635 ~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~  678 (880)
T PRK02224        635 RKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD  678 (880)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444433333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.59  E-value=23  Score=26.88  Aligned_cols=93  Identities=18%  Similarity=0.255  Sum_probs=53.2

Q ss_pred             HhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHH
Q psy18023         52 MEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ-----NKLDQIKKELDQMVKELDL  126 (151)
Q Consensus        52 ~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q-----k~LdqIsK~Ldqisk~ld~  126 (151)
                      .+..+|-=-....++-..+..+.+-+.++-.+++..-..|...-..++.-.+....     ..+.++-.+|++.-+.|..
T Consensus        19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e   98 (143)
T PF12718_consen   19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE   98 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33444444444555556666666666666667776666666666666666554433     4555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy18023        127 TIKELNQIIKELNQIIKE  144 (151)
Q Consensus       127 isK~L~qIsk~l~qI~K~  144 (151)
                      +..-|.++.......-..
T Consensus        99 ~~ekl~e~d~~ae~~eRk  116 (143)
T PF12718_consen   99 TTEKLREADVKAEHFERK  116 (143)
T ss_pred             HHHHHHHHHHHhHHHHHH
Confidence            555555555554444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 []

Probab=80.21  E-value=33  Score=28.47  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLI  101 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qI  101 (151)
                      +-+.++.+..+.+.++.+.+.++.+.+++.+..+.....
T Consensus        41 fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f   79 (338)
T PF04124_consen   41 FIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRF   79 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444433333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 35   EESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQV 94
             E   NLE +   E +++  + +      ++  K     +  L + I +L   + ++   
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVE-RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 95   IKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
             K +        +   D+ K E +Q+V EL      L    +ELN+ I +  + + E
Sbjct: 1007 KKTI--------EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 48   EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ 107
               E  K+       L+    +L + I E ++  K L   +             ++   +
Sbjct: 914  RSVERYKKLH---IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 108  N--KLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
                 ++  K     V  L   I +L + + +     K + +  ++
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 24/106 (22%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 48   EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELN--LIIKES 105
            EE+E  ++ + +  K+ Q   +L++ ++E +   ++L L    ++  IK++   ++I E 
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 106  NQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
              NKL + +K L++ V +L   + E  +  K L ++  +   ++ E
Sbjct: 998  QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.03
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	96.46
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	96.23
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	96.2
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	96.02
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	95.88
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	95.79
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	95.6
4ioe_A	93	Secreted protein ESXB; structural genomics, PSI-bi	95.35
2vs0_A	97	Virulence factor ESXA; secreted, four helical bund	95.21
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	94.99
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	94.33
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	93.95
3zrx_A	115	AF1503 protein, osmolarity sensor protein ENVZ; si	91.86
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	91.79
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	91.49
4ioe_A	93	Secreted protein ESXB; structural genomics, PSI-bi	91.29
3zrx_A	115	AF1503 protein, osmolarity sensor protein ENVZ; si	90.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.68
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	90.56
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	90.33
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	90.32
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	89.98
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	89.84
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	89.45
2ieq_A	109	S glycoprotein, spike glycoprotein, peplomer prote	88.79
4abx_A	175	DNA repair protein RECN; DNA binding protein, ATP	88.78
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	88.47
2vs0_A	97	Virulence factor ESXA; secreted, four helical bund	88.29
3fav_B	94	ESAT-6, 6 kDa early secretory antigenic target; co	87.82
3fav_A	101	ESAT-6-like protein ESXB; complex, operon structur	87.62
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	86.67
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	86.51
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	86.15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	85.76
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	85.65
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.54
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	82.53
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.5
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	81.16
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	80.72
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	80.7

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.03  E-value=0.038  Score=37.90  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         64 DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELN   99 (151)
Q Consensus        64 DQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~   99 (151)
                      |.|+|.|..+-..++.+...++.+...+...-..+.
T Consensus         2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~   37 (284)
T 1c1g_A            2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSK   37 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433333333

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B

Probab=96.46  E-value=0.095  Score=39.08  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         69 ELDQIIKELDQIIKELDLIIKESNQVIKELNLII  102 (151)
Q Consensus        69 nLdQISK~LdQIsK~LdqISK~l~QiSk~L~qIS  102 (151)
                      .++++...+.++...+.+|...++++....++|+
T Consensus       220 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~  253 (309)
T 2ch7_A          220 KLNSIVGAVERINEMLQNIAAAIEEQTAAVDEIT  253 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=96.23  E-value=0.098  Score=33.08  Aligned_cols=85  Identities=12%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             HhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHH
Q psy18023         52 MEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTI  128 (151)
Q Consensus        52 ~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~is  128 (151)
                      |-..-+||+..|.+..+.+.+.+..+.++...|..-...|..      .|.-...+   ....+....+.++...|+.|+
T Consensus         3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~------~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~   76 (99)
T 3zbh_A            3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG------IWEGASSEAFIQQYQELRPSFEKMAVLLNEVG   76 (99)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999998888888888877777766655532      23222111   344455555666666666666


Q ss_pred             HHHHHHHHHHHHHH
Q psy18023        129 KELNQIIKELNQII  142 (151)
Q Consensus       129 K~L~qIsk~l~qI~  142 (151)
                      ..|.++.....+.-
T Consensus        77 ~~L~~~a~~~~~~d   90 (99)
T 3zbh_A           77 QQLHNSATILEDTD   90 (99)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655554443

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=96.20  E-value=0.21  Score=38.79  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023         71 DQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI  148 (151)
Q Consensus        71 dQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~  148 (151)
                      ++..+...+|..-+..+.....+..+.+.........  +.+..+...+..+++.+..+...+.+++..+.++....+++
T Consensus       126 ~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~s~~i~~i  205 (213)
T 3g67_A          126 NETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSA  205 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444443333332  33344444444444444444444444444444444444333

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=96.02  E-value=0.27  Score=38.96  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q psy18023         74 IKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIK---ELNQIIKELNQIIKELNQI  148 (151)
Q Consensus        74 SK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK---~L~qIsk~l~qI~K~l~q~  148 (151)
                      .+.+++....+.+|...+.+++..+.+|+....+  ....+|...+.+|+....++..   ++...+..|.+....|.+.
T Consensus       219 ~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~  298 (341)
T 3zx6_A          219 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEA  298 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444443333  3334444444444333333332   2233333444444444443


Q ss_pred             h
Q psy18023        149 V  149 (151)
Q Consensus       149 ~  149 (151)
                      |
T Consensus       299 v  299 (341)
T 3zx6_A          299 V  299 (341)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=95.88  E-value=0.3  Score=38.66  Aligned_cols=7  Identities=14%  Similarity=0.453  Sum_probs=3.1

Q ss_pred             HHHHhcC
Q psy18023         19 LFRMFDG   25 (151)
Q Consensus        19 ~~~~~~~   25 (151)
                      +.++-.|
T Consensus        15 ~~~ia~G   21 (341)
T 3zx6_A           15 VDKIAEG   21 (341)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            3444444

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=95.79  E-value=0.2  Score=32.20  Aligned_cols=86  Identities=7%  Similarity=0.074  Sum_probs=51.5

Q ss_pred             HhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHH
Q psy18023         52 MEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTI  128 (151)
Q Consensus        52 ~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~is  128 (151)
                      |-..-+|++..|.+..+.+.+-+..+.++...|..-...|.      ..|.-...+   ....+....+.++...|+.|+
T Consensus         2 MM~~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~------~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~   75 (98)
T 3gwk_C            2 AMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVID------ENWDGSTFDSFEAQFNELSPKITEFAQLLEDIN   75 (98)
T ss_dssp             HHHHBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457899999988888888888777777666665554443      133322222   344455555555555666666


Q ss_pred             HHHHHHHHHHHHHHH
Q psy18023        129 KELNQIIKELNQIIK  143 (151)
Q Consensus       129 K~L~qIsk~l~qI~K  143 (151)
                      +.|.++.....+.-.
T Consensus        76 ~~L~~~a~~~~~~D~   90 (98)
T 3gwk_C           76 QQLLKVADIIEQTDA   90 (98)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666555555544433

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=95.60  E-value=0.54  Score=36.50  Aligned_cols=72  Identities=13%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ------NKLDQIKKELDQMVKELDLTIKELNQI  134 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q------k~LdqIsK~Ldqisk~ld~isK~L~qI  134 (151)
                      ++|+...+++++..+..+...+...+..+...+..+...+..+.+      ..+.++...+.+++..+..+.+...+|
T Consensus         2 i~qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (213)
T 3g67_A            2 IEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSI   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777776666666666666666555554332      334444444444444444443333333

>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A

Probab=95.21  E-value=0.19  Score=31.63  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         56 CKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTIKELN  132 (151)
Q Consensus        56 ~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~isK~L~  132 (151)
                      -+||+..|.+....+.+.+..|.++...|..-...|.      ..|.-...+   ....+....+.++...|+.+++.|.
T Consensus         4 i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~------~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~   77 (97)
T 2vs0_A            4 IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIA------ANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLN   77 (97)
T ss_dssp             BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888887777777777766666655544442      234332222   3444555556666666666665555


Q ss_pred             HHHHHHH
Q psy18023        133 QIIKELN  139 (151)
Q Consensus       133 qIsk~l~  139 (151)
                      ++.....
T Consensus        78 ~~a~~y~   84 (97)
T 2vs0_A           78 STADAVQ   84 (97)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=94.99  E-value=0.52  Score=32.16  Aligned_cols=30  Identities=10%  Similarity=0.145  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        112 QIKKELDQMVKELDLTIKELNQIIKELNQI  141 (151)
Q Consensus       112 qIsK~Ldqisk~ld~isK~L~qIsk~l~qI  141 (151)
                      .....+..+...+......+..+...+.++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           73 LAEKKATDAEADVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=94.33  E-value=0.77  Score=35.11  Aligned_cols=18  Identities=11%  Similarity=0.152  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy18023        123 ELDLTIKELNQIIKELNQ  140 (151)
Q Consensus       123 ~ld~isK~L~qIsk~l~q  140 (151)
                      ++...+..|.+.+..|.+
T Consensus       200 ~~~~~~~~L~~~a~~L~~  217 (227)
T 1qu7_A          200 QSAAAAAALEEQASRLTE  217 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333344444433333

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=93.95  E-value=0.67  Score=33.23  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         71 DQIIKELDQIIKELDLIIKESNQVIK   96 (151)
Q Consensus        71 dQISK~LdQIsK~LdqISK~l~QiSk   96 (151)
                      ++|....++|...++.|+..++++.+
T Consensus        43 ~ef~~~ve~i~~~i~~i~~~v~el~~   68 (279)
T 3c98_B           43 DEFFEQVEEIRGFIDKIAENVEEVKR   68 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444433

>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A

Probab=91.86  E-value=1.2  Score=26.52  Aligned_cols=42  Identities=10%  Similarity=0.260  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Q psy18023         64 DQIKKELDQIIKELDQIIKE----LDLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        64 DQIsKnLdQISK~LdQIsK~----LdqISK~l~QiSk~L~qISKel  105 (151)
                      .++...+..+.+.|.+..+.    +..++..+..-+..+...+..+
T Consensus        40 ~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l   85 (115)
T 3zrx_A           40 GILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMM   85 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34444444555544444444    4444444444444444444333

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=91.79  E-value=1.5  Score=27.45  Aligned_cols=69  Identities=10%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         77 LDQIIKELDLIIKESNQVIKELNLIIKESNQ----NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL  145 (151)
Q Consensus        77 LdQIsK~LdqISK~l~QiSk~L~qISKel~q----k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l  145 (151)
                      |.+..+.+...+..++++...|......|..    ..=+.......+....+..+...|++|+..|.++....
T Consensus        14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~   86 (99)
T 3zbh_A           14 LRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATIL   86 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444333333333322    33344444444455555555555555555555554443

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=91.49  E-value=3.7  Score=31.31  Aligned_cols=22  Identities=14%  Similarity=0.223  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q psy18023        128 IKELNQIIKELNQIIKELNQIV  149 (151)
Q Consensus       128 sK~L~qIsk~l~qI~K~l~q~~  149 (151)
                      +.++...+..|.+....|.+.|
T Consensus       198 ~~~~~~~~~~L~~~a~~L~~~v  219 (227)
T 1qu7_A          198 VEQSAAAAAALEEQASRLTEAV  219 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666666666554

>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A

Probab=90.68  E-value=1.7  Score=25.91  Aligned_cols=13  Identities=15%  Similarity=0.457  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q psy18023         72 QIIKELDQIIKEL   84 (151)
Q Consensus        72 QISK~LdQIsK~L   84 (151)
                      ++...+..+...|
T Consensus        41 ~l~~~~n~m~~~l   53 (115)
T 3zrx_A           41 ILAKSIERLRRSL   53 (115)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.68  E-value=5.8  Score=32.11  Aligned_cols=43  Identities=14%  Similarity=0.189  Sum_probs=29.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023        108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVE  150 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~~  150 (151)
                      +.++++.++...+-+.++..-+.+..+.++++++++++.|..+
T Consensus       537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666677777777777777777777777777777654

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=90.56  E-value=2.7  Score=28.13  Aligned_cols=85  Identities=15%  Similarity=0.259  Sum_probs=51.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------h----hhhhHHHHHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES----------N----QNKLDQIKKELDQMVKELDLT  127 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel----------~----qk~LdqIsK~Ldqisk~ld~i  127 (151)
                      +++.+++.++++.+.+..+......+...+.+..+.+....+--          +    ...++.+...+..+-..+..+
T Consensus         4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l   83 (112)
T 1l8d_A            4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKL   83 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777788877777777777777777777777776665411          1    123445555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy18023        128 IKELNQIIKELNQIIKELN  146 (151)
Q Consensus       128 sK~L~qIsk~l~qI~K~l~  146 (151)
                      ...++.+.+.+..+...++
T Consensus        84 ~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           84 IDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554443

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=90.33  E-value=4.3  Score=30.06  Aligned_cols=44  Identities=16%  Similarity=0.156  Sum_probs=22.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q psy18023         62 KLDQIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qISKel  105 (151)
                      +...+...+++++..-.+++..| .++.+.|..+.+.+....|..
T Consensus        70 ~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~  114 (301)
T 2efk_A           70 SFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMH  114 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555 445555555555555544443

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=90.32  E-value=2.4  Score=27.02  Aligned_cols=38  Identities=11%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL  145 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l  145 (151)
                      ..=+.......+....+..+...|++|++.|.++....
T Consensus        48 ~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~   85 (98)
T 3gwk_C           48 STFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADII   85 (98)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555444

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=89.98  E-value=2.3  Score=30.36  Aligned_cols=32  Identities=13%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQ   93 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~Q   93 (151)
                      .|++|....++|...+++|+..+..+.+...+
T Consensus        41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~   72 (279)
T 3c98_B           41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA   72 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36666677777777777777766666654443

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=89.84  E-value=4.7  Score=29.72  Aligned_cols=78  Identities=14%  Similarity=0.199  Sum_probs=37.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQ  140 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~q  140 (151)
                      +.+.|...++.+++.-.+++..| .++.+.+.+|.+.+....|...+ ....+.|.+......|...-+...+-.+.+..
T Consensus        77 aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~-~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~  155 (305)
T 2efl_A           77 AFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFH-DGRKAQQHIETCWKQLESSKRRFERDCKEADR  155 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555 55556666665555555554432 22333444444444444333334444444433

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=89.45  E-value=4.4  Score=29.23  Aligned_cols=25  Identities=16%  Similarity=0.413  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         70 LDQIIKELDQIIKELDLIIKESNQV   94 (151)
Q Consensus        70 LdQISK~LdQIsK~LdqISK~l~Qi   94 (151)
                      |+.|-...+.|...|+.|...++++
T Consensus        38 m~~F~~~v~~I~~~i~~i~~~v~~l   62 (180)
T 1s94_A           38 MEEFFEQVEEIRAMIDKISDNVDAV   62 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444443333333

>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}

Probab=88.79  E-value=5.9  Score=29.49  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH--------HHHHHHHHH---HHHHHHH
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELD--------QMVKELDLT---IKELNQI  134 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ld--------qisk~ld~i---sK~L~qI  134 (151)
                      +.+.|.|+++.+.-.+.-+..|-.-.+++.+.|.+.-..++ +...-|+-.|.        .|..+||++   ...|-+|
T Consensus        13 ~n~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~ll~QLn-~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~   91 (109)
T 2ieq_A           13 VNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLR-HNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQT   91 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444433333 33444444444        444444443   3456666


Q ss_pred             HHHHHHHHHHHHH
Q psy18023        135 IKELNQIIKELNQ  147 (151)
Q Consensus       135 sk~l~qI~K~l~q  147 (151)
                      ..+|.+.+.-||.
T Consensus        92 ~~elq~~idn~n~  104 (109)
T 2ieq_A           92 TVELQGLIDQINS  104 (109)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            6777666666553

>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}

Probab=88.78  E-value=4.8  Score=29.27  Aligned_cols=42  Identities=19%  Similarity=0.221  Sum_probs=22.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023        106 NQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ  147 (151)
Q Consensus       106 ~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q  147 (151)
                      +...|++|...|+.|.+---.--..++++....+++.++|..
T Consensus       120 DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~  161 (175)
T 4abx_A          120 DPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAG  161 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            347788888888877543222112344444444444444443

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=88.47  E-value=4.1  Score=27.31  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         70 LDQIIKELDQIIKELDLIIKESNQV   94 (151)
Q Consensus        70 LdQISK~LdQIsK~LdqISK~l~Qi   94 (151)
                      |+.|-...+.|..+|+.|...++++
T Consensus         7 m~~F~~~v~~I~~~i~~i~~~v~~l   31 (127)
T 1ez3_A            7 MDEFFEQVEEIRGFIDKIAENVEEV   31 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444443333333

>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A

Probab=88.29  E-value=3.2  Score=25.83  Aligned_cols=70  Identities=11%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         77 LDQIIKELDLIIKESNQVIKELNLIIKESNQ----NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELN  146 (151)
Q Consensus        77 LdQIsK~LdqISK~l~QiSk~L~qISKel~q----k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~  146 (151)
                      |.+..+.+...+..+.++...|..-...|..    ..=+.......+....+..+...|.+|++.|.++.....
T Consensus        11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~   84 (97)
T 2vs0_A           11 IRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQ   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555554444433    445666667777777777777777777777777766554

>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B

Probab=87.82  E-value=3.6  Score=25.93  Aligned_cols=33  Identities=6%  Similarity=0.208  Sum_probs=18.4

Q ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         56 CKVDFNKLDQIKKELDQIIKELDQIIKELDLII   88 (151)
Q Consensus        56 ~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqIS   88 (151)
                      -+|||..|++....+......|++....|..-.
T Consensus         3 i~v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v   35 (94)
T 3fav_B            3 QQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSL   35 (94)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999888888888777777666555554433

>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A

Probab=87.62  E-value=4.1  Score=26.30  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         55 ECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKE   90 (151)
Q Consensus        55 ~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~   90 (151)
                      .-+|||..|.+....++++...|.++...|+.-...
T Consensus         4 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~   39 (101)
T 3fav_A            4 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGS   39 (101)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357899888888888888887777776666654433

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=86.67  E-value=6.9  Score=27.90  Aligned_cols=16  Identities=31%  Similarity=0.623  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy18023         65 QIKKELDQIIKELDQI   80 (151)
Q Consensus        65 QIsKnLdQISK~LdQI   80 (151)
                      .|+.+|..|...+.++
T Consensus        13 ~i~~~i~~i~~~v~~L   28 (196)
T 1fio_A           13 QINRDLDKYDHTINQV   28 (196)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444333333

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=86.51  E-value=4.2  Score=29.33  Aligned_cols=28  Identities=18%  Similarity=0.436  Sum_probs=15.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKE   90 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~   90 (151)
                      |++|-.....|...|+.|...+++|.+-
T Consensus        38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~   65 (180)
T 1s94_A           38 MEEFFEQVEEIRAMIDKISDNVDAVKKK   65 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555443

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=86.15  E-value=5.1  Score=26.85  Aligned_cols=21  Identities=14%  Similarity=0.506  Sum_probs=9.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHH
Q psy18023         61 NKLDQIKKELDQIIKELDQII   81 (151)
Q Consensus        61 ~~LDQIsKnLdQISK~LdQIs   81 (151)
                      +....|...|+.|...+++|.
T Consensus        12 ~~v~~I~~~i~~i~~~v~~l~   32 (127)
T 1ez3_A           12 EQVEEIRGFIDKIAENVEEVK   32 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=85.76  E-value=9  Score=35.31  Aligned_cols=9  Identities=22%  Similarity=0.475  Sum_probs=3.6

Q ss_pred             HHhcCCccC
Q psy18023         21 RMFDGLTPV   29 (151)
Q Consensus        21 ~~~~~~~~~   29 (151)
                      |.|--+.|.
T Consensus       841 rl~~klkpL  849 (1184)
T 1i84_S          841 XLFFXIXPL  849 (1184)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHH
Confidence            333334443

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=85.65  E-value=8.6  Score=28.06  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel  105 (151)
                      ..+.+...++.++..-.+++..|.++.+.+.+|.+.+....|..
T Consensus        74 ~w~~~~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK~~  117 (276)
T 2v0o_A           74 VWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKT  117 (276)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555544444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.54  E-value=13  Score=28.41  Aligned_cols=17  Identities=18%  Similarity=0.151  Sum_probs=7.9

Q ss_pred             hhhHHHHHHHHHHHHHH
Q psy18023        108 NKLDQIKKELDQMVKEL  124 (151)
Q Consensus       108 k~LdqIsK~Ldqisk~l  124 (151)
                      +.++.++++++...+..
T Consensus        90 kE~~aL~kEie~~~~~i  106 (256)
T 3na7_A           90 RELRSLNIEEDIAKERS  106 (256)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455555444444433

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=82.53  E-value=16  Score=28.85  Aligned_cols=53  Identities=11%  Similarity=0.158  Sum_probs=29.9

Q ss_pred             hhhhcccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023         54 KECKVDFN----KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN  106 (151)
Q Consensus        54 ~~~~~~~~----~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~  106 (151)
                      +||-.|-.    ++..+...++.+.+-|+.+.|....+...+...+......+..|.
T Consensus        33 ~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~   89 (407)
T 4h8s_A           33 EEALQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLL   89 (407)
T ss_dssp             TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777643    445555555555555555555555555555555555555555553

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.50  E-value=17  Score=28.43  Aligned_cols=26  Identities=27%  Similarity=0.284  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023        125 DLTIKELNQIIKELNQIIKELNQIVE  150 (151)
Q Consensus       125 d~isK~L~qIsk~l~qI~K~l~q~~~  150 (151)
                      |+.-..--..+-.+.++..+||+.+|
T Consensus       119 DdlEr~~R~~~~SleD~e~kln~aiE  144 (189)
T 2v71_A          119 DDLERAKRATIMSLEDFEQRLNQAIE  144 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33333444456667777777777665

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=81.16  E-value=19  Score=28.61  Aligned_cols=54  Identities=15%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHH
Q psy18023         65 QIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELD  118 (151)
Q Consensus        65 QIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ld  118 (151)
                      ++.++|++.-..|.....+| ..+.++++++-..|.....++-.   ..++.+...|.
T Consensus        41 ~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~   98 (273)
T 3s84_A           41 KIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLR   98 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44566666666666665555 45566666666666666665533   34444444443

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=80.72  E-value=20  Score=28.52  Aligned_cols=13  Identities=15%  Similarity=0.381  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHH
Q psy18023        133 QIIKELNQIIKEL  145 (151)
Q Consensus       133 qIsk~l~qI~K~l  145 (151)
                      .|..++..++..|
T Consensus       129 k~~~~leeLr~~l  141 (273)
T 3s84_A          129 KIDQTVEELRRSL  141 (273)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            3444444444444

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=80.70  E-value=15  Score=27.34  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q psy18023         66 IKKELDQIIKELDQIIKELDLIIKES-NQVIKELNLIIKES  105 (151)
Q Consensus        66 IsKnLdQISK~LdQIsK~LdqISK~l-~QiSk~L~qISKel  105 (151)
                      +..-.+.+...++.++..-.+++..| +++.+.|..|.++.
T Consensus        65 ~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~  105 (290)
T 3i2w_A           65 TEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKEN  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666666 56666677666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.55
d1wa8a1	99	ESAT-6 like protein EsxB {Mycobacterium tuberculos	91.78
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	91.27
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	91.22
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	90.15
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	90.08
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	89.71
d1io1a_	395	Phase 1 flagellin {Salmonella typhimurium [TaxId:	88.12
d1wa8b1	94	ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1	87.83
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	87.11
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	85.87
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	83.29
d1wa8a1	99	ESAT-6 like protein EsxB {Mycobacterium tuberculos	81.88
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	80.94
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	80.62

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.29  Score=31.87  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy18023         64 DQIKKELDQIIKELDQIIK   82 (151)
Q Consensus        64 DQIsKnLdQISK~LdQIsK   82 (151)
                      +.|+..|.+|.+.++.+.+
T Consensus        12 ~~I~~~i~~i~~~i~~L~~   30 (196)
T d1fioa_          12 SQINRDLDKYDHTINQVDS   30 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555444444443

>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: EsxAB dimer-like
family: ESAT-6 like
domain: ESAT-6 like protein EsxB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.78  E-value=0.83  Score=28.18  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=23.3

Q ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         56 CKVDFNKLDQIKKELDQIIKELDQIIKELDLIIK   89 (151)
Q Consensus        56 ~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK   89 (151)
                      -|||+..|.+....+++.+.++.+....|+.-..
T Consensus         3 ikvd~~~l~~~A~~~~~~~~~l~~~l~~l~~~v~   36 (99)
T d1wa8a1           3 MKTDAATLAQEAGNFERISGDLKTQIDQVESTAG   36 (99)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888877777777777777666665554433

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=1.3  Score=30.87  Aligned_cols=43  Identities=16%  Similarity=0.225  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel  105 (151)
                      +..+...++.+..-|.++.|....+...++..+..-.+++..|
T Consensus        18 l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L   60 (268)
T d2elba1          18 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLL   60 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555555444555444

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.22  E-value=1.2  Score=29.07  Aligned_cols=44  Identities=11%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES  105 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel  105 (151)
                      .++.+.+.+..+.+.+......+...+.+...+++++..+....
T Consensus        20 ~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~   63 (217)
T d1urua_          20 NFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQ   63 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            45566666777777777777777777777777777776664443

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.15  E-value=1.5  Score=28.28  Aligned_cols=15  Identities=40%  Similarity=0.370  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q psy18023         79 QIIKELDLIIKESNQ   93 (151)
Q Consensus        79 QIsK~LdqISK~l~Q   93 (151)
                      .|...|+.|.+.++.
T Consensus        13 ~I~~~i~~i~~~i~~   27 (196)
T d1fioa_          13 QINRDLDKYDHTINQ   27 (196)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=1.5  Score=28.23  Aligned_cols=60  Identities=8%  Similarity=0.168  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVK  122 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk  122 (151)
                      +..+.+.+..+.+....+...+..++.+...++.+|.+++..-++  ..+..+...+..+.+
T Consensus        15 l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~   76 (200)
T d1i4da_          15 LRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK   76 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            455555666666666666666666666666677776666644333  333344443333333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=1.9  Score=28.96  Aligned_cols=17  Identities=29%  Similarity=0.325  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy18023         87 IIKESNQVIKELNLIIK  103 (151)
Q Consensus        87 ISK~l~QiSk~L~qISK  103 (151)
                      |.+.+..+.+......|
T Consensus        98 i~~~l~~~~~~~~~~~K  114 (288)
T d2efla1          98 IIVDLARYVQELKQERK  114 (288)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}

class: Multi-domain proteins (alpha and beta)
fold: Phase 1 flagellin
superfamily: Phase 1 flagellin
family: Phase 1 flagellin
domain: Phase 1 flagellin
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.12  E-value=2.5  Score=28.24  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=37.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Q psy18023         59 DFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE-SNQNKLDQIKKELDQMVKELDLTI  128 (151)
Q Consensus        59 ~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe-l~qk~LdqIsK~Ldqisk~ld~is  128 (151)
                      |.+.|+|-.+|..+=.--|.=-...|.+++.-|..+.+---|-.-. +++....-|..|++|+..+|+.|.
T Consensus         1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia   71 (395)
T d1io1a_           1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS   71 (395)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777655555444556666665555554433332221 233555555555555555555544

>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: EsxAB dimer-like
family: ESAT-6 like
domain: ESAT-6, EsxA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.83  E-value=1.9  Score=26.60  Aligned_cols=33  Identities=9%  Similarity=0.216  Sum_probs=23.4

Q ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         55 ECKVDFNKLDQIKKELDQIIKELDQIIKELDLI   87 (151)
Q Consensus        55 ~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqI   87 (151)
                      |.++||..|++....|....+.|++.-..|..-
T Consensus         2 ~~~~d~~~l~~~a~~i~~~~~~i~~~l~~L~~~   34 (94)
T d1wa8b1           2 EQQWNFAGIEAAASAIQGNVTSIHSLLDEGKQS   34 (94)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899888888877777777766665555443

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.11  E-value=2.6  Score=27.17  Aligned_cols=26  Identities=19%  Similarity=0.392  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         70 LDQIIKELDQIIKELDLIIKESNQVI   95 (151)
Q Consensus        70 LdQISK~LdQIsK~LdqISK~l~QiS   95 (151)
                      |++|-...+.|.+.|+.|...++++.
T Consensus         5 m~~Ff~eV~~Ir~~I~~i~~~v~~i~   30 (124)
T d1ez3a_           5 MDEFFEQVEEIRGFIDKIAENVEEVK   30 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444443

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.87  E-value=3.1  Score=26.89  Aligned_cols=89  Identities=13%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh-------------------------------
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQV---IKELNLIIKESNQ-------------------------------  107 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~Qi---Sk~L~qISKel~q-------------------------------  107 (151)
                      +|.++...++.+-+.++++...+.++...++.+   .+.|+.+.+..+.                               
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~   81 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence            566777777777777777776666665544444   3555555443210                               


Q ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023        108 ------NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVE  150 (151)
Q Consensus       108 ------k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~~  150 (151)
                            +-++-+.+.++.+-+.++.+.+.++++...+.++...++|++.
T Consensus        82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_          82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1233455556666666666677777777777777777776653

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=4.7  Score=26.94  Aligned_cols=42  Identities=21%  Similarity=0.180  Sum_probs=22.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK  103 (151)
Q Consensus        62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK  103 (151)
                      .++.+.+++++=.+.++++..=+..-++-=.+-++.|..+++
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~eRa~iE~eYak~L~kl~~   51 (288)
T d2efla1          10 QFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSK   51 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666655555555555555544444445555555554

>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: EsxAB dimer-like
family: ESAT-6 like
domain: ESAT-6 like protein EsxB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.88  E-value=3.9  Score=24.93  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         69 ELDQIIKELDQIIKELDLIIKESNQVIKELNL-IIKESNQ---NKLDQIKKELDQMVKELDLTIKELNQ  133 (151)
Q Consensus        69 nLdQISK~LdQIsK~LdqISK~l~QiSk~L~q-ISKel~q---k~LdqIsK~Ldqisk~ld~isK~L~q  133 (151)
                      .|.+....+++.+.++......|++-...|.. |.-...+   ...++..+...+|...|+.|+..|.+
T Consensus         9 ~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~L~~   77 (99)
T d1wa8a1           9 TLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQ   77 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555444444433321 1111111   33444444444444444444444443

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.94  E-value=6.6  Score=27.02  Aligned_cols=41  Identities=15%  Similarity=0.109  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023         63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK  103 (151)
Q Consensus        63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK  103 (151)
                      |+|+.+.+..+.+...-..+.+...+.........|..+..
T Consensus        21 l~~~np~~k~li~~~k~y~~a~~~~~~a~~~f~dal~~~~~   61 (248)
T d1y2oa1          21 MEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGE   61 (248)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555544444455555443

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=4.9  Score=26.37  Aligned_cols=36  Identities=11%  Similarity=0.213  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy18023         84 LDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQ  119 (151)
Q Consensus        84 LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldq  119 (151)
                      ....-.+++++...|++|-.-..+..|+..+..|.+
T Consensus        58 ~~~~~~g~d~L~~~ld~i~~la~~G~l~eAk~~l~~   93 (106)
T d256ba_          58 MKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQ   93 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334445555555555555555555555555544443