Psyllid ID: psy18031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MRLLNKRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKLY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHcccHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MRLLNKRLVRTYEVLthtsadvhdfesskTHLIFVYISGALQKWAWEYSGfrkyglyyddlanetPVVEEALRRLPEKLKNERHFRQLRAVQLNIQksilpkdqwtkyedetryLKPYIEQVEKEFKEKEEWGKLY
Flexible Loop (DISEMBL)
MRLLNKRLVRTYevlthtsadvhdfessKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPeklknerhfRQLRAVqlniqksilpkdqwtkyedetrylKPYIEQVEKEfkekeewgkly
Low Complexity Region (SEG)
MRLLNKRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVekefkekeeWGKLY
Disordered region (IsUnstruct)
*****KRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQ***************
Disordered Region (DISOPRED)
****NKRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL*
Disordered Region (DISEMBL)
MRLLNKRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKE***********
Disordered Region (DISPRO)
*RLLNKRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLLNKRLVRTYEVLTHTSADVHDFESSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
P14927	111	Cytochrome b-c1 complex s	yes	N/A	0.698	0.855	0.526	3e-21
P00129	111	Cytochrome b-c1 complex s	yes	N/A	0.698	0.855	0.505	5e-21
Q9D855	111	Cytochrome b-c1 complex s	yes	N/A	0.698	0.855	0.515	8e-21
Q5RC24	111	Cytochrome b-c1 complex s	yes	N/A	0.698	0.855	0.515	1e-20
O01369	130	Cytochrome b-c1 complex s	N/A	N/A	0.647	0.676	0.466	7e-17
P49345	127	Cytochrome b-c1 complex s	yes	N/A	0.639	0.685	0.465	1e-13
O74533	137	Cytochrome b-c1 complex s	yes	N/A	0.639	0.635	0.465	1e-13
Q6FSJ2	128	Cytochrome b-c1 complex s	yes	N/A	0.610	0.648	0.440	2e-13
Q751U4	126	Cytochrome b-c1 complex s	yes	N/A	0.639	0.690	0.465	3e-13
P00128	127	Cytochrome b-c1 complex s	yes	N/A	0.639	0.685	0.409	4e-13

>sp|P14927|QCR7_HUMAN Cytochrome b-c1 complex subunit 7 OS=Homo sapiens GN=UQCRB PE=1 SV=2

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD   E   V+EA+RRLPE L N+R FR  RA+ LN++  I
Sbjct: 16  GIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQI 75

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           LPK+QWTKYE+E  YL+PY+++V +E KE+EEW K
Sbjct: 76  LPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAK 110

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.
Homo sapiens (taxid: 9606)

>sp|P00129|QCR7_BOVIN Cytochrome b-c1 complex subunit 7 OS=Bos taurus GN=UQCRB PE=1 SV=3

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 70/95 (73%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L N+R FR  RA+ L++++ I
Sbjct: 16  GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYNDRVFRIKRALDLSMRQQI 75

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           LPK+QWTKYE++  YL+PY+++V +E KE+EEW K
Sbjct: 76  LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 110

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Bos taurus (taxid: 9913)

>sp|Q9D855|QCR7_MOUSE Cytochrome b-c1 complex subunit 7 OS=Mus musculus GN=Uqcrb PE=1 SV=3

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 67/95 (70%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
             +KW +  +GF K GL  DD  +ET  V+EA+RRLPE L N+R  R  RA+ L ++  I
Sbjct: 16  GFRKWYYNAAGFNKLGLMRDDTLHETEDVKEAIRRLPEDLYNDRMLRIKRALDLTMRHQI 75

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           LPKDQWTKYE++  YL+PY+++V +E KE+EEW K
Sbjct: 76  LPKDQWTKYEEDKFYLEPYLKEVIRERKEREEWAK 110

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Mus musculus (taxid: 10090)

>sp|Q5RC24|QCR7_PONAB Cytochrome b-c1 complex subunit 7 OS=Pongo abelii GN=UQCRB PE=3 SV=3

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 68/95 (71%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD   E   V+EA+RRLPE L N+R FR  RA+ L+++  I
Sbjct: 16  GIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLSLKHQI 75

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           LPK+QWTKYE+E  YL+PY+++V +E KE+EEW K
Sbjct: 76  LPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAK 110

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Pongo abelii (taxid: 9601)

>sp|O01369|QCR7_FASHE Cytochrome b-c1 complex subunit 7 OS=Fasciola hepatica GN=UBCRBP PE=3 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 45  AWEYSG--FRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPK 102
           A+++S   + + GL Y D+   +P++ EA+RRLP +    R FR  RA QL+  K++LPK
Sbjct: 31  AFQFSNSYYNQLGLLYHDVIPHSPLIAEAVRRLPREETEARDFRIARAFQLSASKTVLPK 90

Query: 103 DQWTKYEDETRYLKPYIEQVEKEFKEKEEW 132
           +QWT  ED+  YL PYIE  +KE+KEK EW
Sbjct: 91  EQWTAIEDDIPYLDPYIEVAKKEWKEKAEW 120

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Fasciola hepatica (taxid: 6192)

>sp|P49345|QCR7_KLULA Cytochrome b-c1 complex subunit 7 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=QCR7 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 49  SGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           SG+RK GL +DDL  E   + + ALRRLP      R +R + A QL++   +LPKD+WTK
Sbjct: 36  SGYRKMGLRFDDLIEEENELAQTALRRLPADESYARIYRIINAHQLSLSHHLLPKDKWTK 95

Query: 108 YEDETRYLKPYIEQVEKEFKEKEEWGKL 135
            ED+  YL PY+ + E   KEKEE   L
Sbjct: 96  PEDDIPYLTPYLLEAEAFVKEKEELDNL 123

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|O74533|QCR7_SCHPO Cytochrome b-c1 complex subunit 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr7 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 49  SGFRKYGLYYDDLA-NETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           SG+RKYGL YDDL   E    ++AL RLP+    +R +R  RA+QL+I+  ILPK +WTK
Sbjct: 31  SGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEWTK 90

Query: 108 YEDETRYLKPYIEQVEKEFKEKEEWGKL 135
            E++  YL+P + +V  E KE+E +  L
Sbjct: 91  PEEDYHYLRPVLAEVIAERKEREAFDAL 118

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FSJ2|QCR7_CANGA Cytochrome b-c1 complex subunit 7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=QCR7 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
           I   + K   +YSG+RK GL +DDL A E P+++ AL+RLPE     R++R +RA Q  +
Sbjct: 24  ICVPVSKQYIKYSGYRKLGLRFDDLIAEENPIMQTALKRLPEGESYARNYRIIRAHQSEL 83

Query: 96  QKSILPKDQWTKYEDETRYLKPYI 119
            K +LP+++W K +D+  YL PYI
Sbjct: 84  TKHLLPRNEWVKAQDDVPYLLPYI 107

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q751U4|QCR7_ASHGO Cytochrome b-c1 complex subunit 7 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=QCR7 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 49  SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           SG+R+ GL +DDL A E  +V+ ALRRLPE+    R FR ++A QL +   +LPK +WTK
Sbjct: 36  SGYRQLGLKFDDLIAEENDIVQTALRRLPEEESYARVFRIIQAHQLELTHHLLPKHKWTK 95

Query: 108 YEDETRYLKPYIEQVEKEFKEKEEWGKL 135
            E++  YL PY+ + E   KEK E   L
Sbjct: 96  PEEDKSYLLPYLLEAEAAAKEKLELDAL 123

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P00128|QCR7_YEAST Cytochrome b-c1 complex subunit 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QCR7 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 49  SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           +G++K GL +DDL A E P+++ ALRRLPE     R +R +RA Q  +   +LP+++W K
Sbjct: 36  AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 95

Query: 108 YEDETRYLKPYIEQVEKEFKEKEEWGKL 135
            +++  YL PYI + E   KEK+E   +
Sbjct: 96  AQEDVPYLLPYILEAEAAAKEKDELDNI 123

Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain that generates an electrochemical potential coupled to ATP synthesis. The complex couples electron transfer from ubiquinol to cytochrome c. QCR7 is involved in redox-linked proton pumping.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
113866028	117	ubiquinol-cytochrome C reductase complex	0.727	0.846	0.585	3e-26
389608911	108	ubiquinol-cytochrome c reductase complex	0.720	0.907	0.591	3e-24
312384194	517	hypothetical protein AND_02423 [Anophele	0.75	0.197	0.529	6e-24
72137103	108	PREDICTED: cytochrome b-c1 complex subun	0.705	0.888	0.541	2e-23
68051539	112	IP05674p [Drosophila melanogaster]	0.720	0.875	0.540	7e-23
195353026	111	GM16378 [Drosophila sechellia] gi|195574	0.720	0.882	0.540	7e-23
24650794	111	CG17856 [Drosophila melanogaster] gi|730	0.720	0.882	0.540	7e-23
288856309	121	cytochrome b-c1 complex subunit 7 [Nason	0.720	0.809	0.530	7e-23
195403129	111	GJ18506 [Drosophila virilis] gi|19414099	0.764	0.936	0.509	1e-22
195503585	111	GE23784 [Drosophila yakuba] gi|194184813	0.720	0.882	0.530	2e-22

>gi|113866028|ref|NP_001038957.1| ubiquinol-cytochrome C reductase complex 14kD subunit [Bombyx mori] gi|103058102|gb|ABF71568.1| ubiquinol-cytochrome C reductase complex 14kD subunit [Bombyx mori]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 77/99 (77%)

Query: 38  SGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQK 97
           S +L KWA+  SGF KYGL  DD  +ETP V EALRRLP  + +ER+FR +RA+QL++QK
Sbjct: 19  SDSLSKWAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQK 78

Query: 98  SILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKLY 136
           +ILPK++WTKYE+++ YL P +EQVEKE  E+E+W K Y
Sbjct: 79  TILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKEY 117

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608911|dbj|BAM18067.1| ubiquinol-cytochrome c reductase complex 14 kd protein [Papilio xuthus]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 75/98 (76%)

Query: 39  GALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKS 98
            AL+KWA+  SGF KYGL  DD   E   V+EALRRLPE + +ER+FR +RAVQL+IQK+
Sbjct: 11  SALKKWAYNLSGFNKYGLLRDDCLYENDDVQEALRRLPEHVVDERNFRIVRAVQLSIQKT 70

Query: 99  ILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKLY 136
           ILPK++WTKYE++  YL P +EQV KE +E+E+W K Y
Sbjct: 71  ILPKEEWTKYEEDKLYLTPIVEQVIKERQEREQWEKNY 108

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384194|gb|EFR28979.1| hypothetical protein AND_02423 [Anopheles darlingi]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 77/102 (75%)

Query: 31  HLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRA 90
           H I   +  AL KWA+  +GF +YGL+ DD   E   V+EA+RRLPEKLK+ER+FR  RA
Sbjct: 354 HGITEALKAALGKWAYNLAGFNQYGLHRDDCLYENDDVKEAIRRLPEKLKDERNFRITRA 413

Query: 91  VQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEW 132
           + L++ K+ILPK+QWTKYE++T+YL+PY+++V +E  EK +W
Sbjct: 414 LHLSMTKTILPKEQWTKYEEDTKYLEPYLDEVVRERDEKVKW 455

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|72137103|ref|XP_790921.1| PREDICTED: cytochrome b-c1 complex subunit 7-like [Strongylocentrotus purpuratus] gi|390346186|ref|XP_790701.3| PREDICTED: cytochrome b-c1 complex subunit 7-like [Strongylocentrotus purpuratus]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 70/96 (72%)

Query: 39  GALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKS 98
           G  +KW +   GF + GL  DD     P+VEEA+RRLPE   N+R FR  RA+ L+++ S
Sbjct: 12  GGFRKWYYSLCGFNQLGLRRDDTLRSNPIVEEAIRRLPENEYNDRVFRIKRALDLSLKHS 71

Query: 99  ILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           ILPKDQWTK+E+++RYLKP++++VEKEF EK EW K
Sbjct: 72  ILPKDQWTKFEEDSRYLKPFLDEVEKEFTEKAEWNK 107

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|68051539|gb|AAY85033.1| IP05674p [Drosophila melanogaster]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQ 96
           +   L KWA+  SGF +YGLY DD   E   V EA+RRLP KL +ER++R LRA+ L++ 
Sbjct: 13  VFSKLGKWAYNMSGFNQYGLYRDDCLYENEDVAEAVRRLPRKLYDERNYRILRALHLSMT 72

Query: 97  KSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           K+ILPK+QWTKYE++ +YL+PY+ +V+KE +E+EEW K
Sbjct: 73  KTILPKEQWTKYEEDIKYLEPYLNEVQKEREEREEWSK 110

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195353026|ref|XP_002043011.1| GM16378 [Drosophila sechellia] gi|195574489|ref|XP_002105221.1| GD21370 [Drosophila simulans] gi|194127076|gb|EDW49119.1| GM16378 [Drosophila sechellia] gi|194201148|gb|EDX14724.1| GD21370 [Drosophila simulans]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQ 96
           +   L KWA+  SGF +YGLY DD   E   V EA+RRLP KL +ER++R LRA+ L++ 
Sbjct: 12  VFSKLGKWAYNMSGFNQYGLYRDDCLYENEDVTEAVRRLPRKLYDERNYRILRALHLSMT 71

Query: 97  KSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           K+ILPK+QWTKYE++ +YL+PY+ +V+KE +E+EEW K
Sbjct: 72  KTILPKEQWTKYEEDIKYLEPYLNEVQKEREEREEWSK 109

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24650794|ref|NP_651614.1| CG17856 [Drosophila melanogaster] gi|7301665|gb|AAF56781.1| CG17856 [Drosophila melanogaster] gi|220951340|gb|ACL88213.1| CG17856-PA [synthetic construct]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQ 96
           +   L KWA+  SGF +YGLY DD   E   V EA+RRLP KL +ER++R LRA+ L++ 
Sbjct: 12  VFSKLGKWAYNMSGFNQYGLYRDDCLYENEDVAEAVRRLPRKLYDERNYRILRALHLSMT 71

Query: 97  KSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           K+ILPK+QWTKYE++ +YL+PY+ +V+KE +E+EEW K
Sbjct: 72  KTILPKEQWTKYEEDIKYLEPYLNEVQKEREEREEWSK 109

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288856309|ref|NP_001165807.1| cytochrome b-c1 complex subunit 7 [Nasonia vitripennis]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 73/98 (74%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQ 96
           I   LQ+W +  +GF +YGL  DD+ +ETPVV+EALRRLPE + + R+FR +RA  L ++
Sbjct: 23  IGPTLQQWVYNKAGFNQYGLMRDDMIHETPVVKEALRRLPEDVLDARNFRIVRAGYLCLR 82

Query: 97  KSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           K +LPK+QWTK E++  YL+PYI++VE E  EK+EW K
Sbjct: 83  KDVLPKEQWTKLEEDVMYLQPYIKEVEAEIAEKKEWEK 120

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195403129|ref|XP_002060147.1| GJ18506 [Drosophila virilis] gi|194140991|gb|EDW57417.1| GJ18506 [Drosophila virilis]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 79/108 (73%), Gaps = 4/108 (3%)

Query: 27  SSKTHLIFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFR 86
           + K  L+F      L KWA+  SGF +YGL+ DD   E   V+EA+RRLP KL +ER++R
Sbjct: 6   ARKGPLVF----SNLGKWAYNLSGFNQYGLHRDDCLYENEDVQEAIRRLPRKLYDERNYR 61

Query: 87  QLRAVQLNIQKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
            +RA+ L++ K+ILPK+QWTKYE++ +YL+PY+++VEKE  E+EEW K
Sbjct: 62  IIRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVEKERIEREEWNK 109

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503585|ref|XP_002098712.1| GE23784 [Drosophila yakuba] gi|194184813|gb|EDW98424.1| GE23784 [Drosophila yakuba]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 74/98 (75%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQ 96
           +   L KWA+  SGF +YGLY DD   E   V EA+RRLP KL +ER++R LRA+ L++ 
Sbjct: 12  VFSKLGKWAYNMSGFNQYGLYRDDCLYENEDVAEAVRRLPRKLYDERNYRILRALHLSMT 71

Query: 97  KSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           K+ILPK+QWTKYE++ +YL+PY+ +V+KE +E+E+W K
Sbjct: 72  KTILPKEQWTKYEEDIKYLEPYLSEVQKEREEREQWNK 109

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0039576	111	CG17856 [Drosophila melanogast	0.705	0.864	0.5	1.6e-22
FB|FBgn0030733	111	CG3560 [Drosophila melanogaste	0.705	0.864	0.468	5.5e-22
RGD|1311971	111	Uqcrb "ubiquinol-cytochrome c	0.720	0.882	0.464	2.7e-20
UNIPROTKB|P14927	111	UQCRB "Cytochrome b-c1 complex	0.720	0.882	0.464	3.5e-20
UNIPROTKB|P00129	111	UQCRB "Cytochrome b-c1 complex	0.720	0.882	0.444	7.2e-20
MGI|MGI:1914780	111	Uqcrb "ubiquinol-cytochrome c	0.720	0.882	0.454	1.9e-19
ZFIN|ZDB-GENE-050522-542	111	uqcrb "ubiquinol-cytochrome c	0.683	0.837	0.473	2.5e-19
UNIPROTKB|F1P3M8	108	UQCRB "Cytochrome b-c1 complex	0.691	0.870	0.457	3.1e-19
UNIPROTKB|F1PLP2	106	UQCRB "Cytochrome b-c1 complex	0.720	0.924	0.444	4e-19
UNIPROTKB|B7Z2R2	161	UQCRB "cDNA FLJ52271, moderate	0.544	0.459	0.506	1.6e-15

FB|FBgn0039576 CG17856 [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query:    41 LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 100
             L KWA+  SGF +YGLY DD   E   V EA+RRLP KL +ER++R LRA+ L++ K+IL
Sbjct:    16 LGKWAYNMSGFNQYGLYRDDCLYENEDVAEAVRRLPRKLYDERNYRILRALHLSMTKTIL 75

Query:   101 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGKLY 136
             PK+QWTKYE++ +YL+PY+ +V         W K +
Sbjct:    76 PKEQWTKYEEDIKYLEPYLNEVQKEREEREEWSKTH 111

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0034551 "mitochondrial respiratory chain complex III assembly" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

FB|FBgn0030733 CG3560 [Drosophila melanogaster (taxid:7227)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 45/96 (46%), Positives = 69/96 (71%)

Query:    41 LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 100
             L +WA+  SGF +YGL+ DD   E   V+EA+RRLP KL +ER++R +RA+ L++ K+IL
Sbjct:    16 LGRWAYNLSGFNQYGLHRDDCLYENEDVKEAVRRLPRKLYDERNYRIMRALHLSMTKTIL 75

Query:   101 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGKLY 136
             PK+QWTKYE++ +YL+PY+++V         W K++
Sbjct:    76 PKEQWTKYEEDVKYLEPYLKEVVKEREEREDWEKIH 111

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

RGD|1311971 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 46/99 (46%), Positives = 65/99 (65%)

Query:    36 YISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
             ++ G  +KW +  +GF K GL  DD  +ET  V+EA+RRLPE L N+R FR  RA+ L++
Sbjct:    13 WLDG-FRKWYYNAAGFNKLGLMRDDTMHETEDVKEAIRRLPENLYNDRMFRIKRALDLSM 71

Query:    96 QKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             +  ILPKDQWTKYE++  YL+PY+++V         W K
Sbjct:    72 RHQILPKDQWTKYEEDKFYLEPYLKEVIRERKEREEWAK 110

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|P14927 UQCRB "Cytochrome b-c1 complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 46/99 (46%), Positives = 64/99 (64%)

Query:    36 YISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
             ++ G ++KW +  +GF K GL  DD   E   V+EA+RRLPE L N+R FR  RA+ LN+
Sbjct:    13 WLDG-IRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNL 71

Query:    96 QKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             +  ILPK+QWTKYE+E  YL+PY+++V         W K
Sbjct:    72 KHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAK 110

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|P00129 UQCRB "Cytochrome b-c1 complex subunit 7" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/99 (44%), Positives = 66/99 (66%)

Query:    36 YISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
             ++ G ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L N+R FR  RA+ L++
Sbjct:    13 WLEG-IRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYNDRVFRIKRALDLSM 71

Query:    96 QKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             ++ ILPK+QWTKYE++  YL+PY+++V         W K
Sbjct:    72 RQQILPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 110

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

MGI|MGI:1914780 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Mus musculus (taxid:10090)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 45/99 (45%), Positives = 63/99 (63%)

Query:    36 YISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
             ++ G  +KW +  +GF K GL  DD  +ET  V+EA+RRLPE L N+R  R  RA+ L +
Sbjct:    13 WLDG-FRKWYYNAAGFNKLGLMRDDTLHETEDVKEAIRRLPEDLYNDRMLRIKRALDLTM 71

Query:    96 QKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             +  ILPKDQWTKYE++  YL+PY+++V         W K
Sbjct:    72 RHQILPKDQWTKYEEDKFYLEPYLKEVIRERKEREEWAK 110

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISO

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

ZFIN|ZDB-GENE-050522-542 uqcrb "ubiquinol-cytochrome c reductase binding protein" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/93 (47%), Positives = 60/93 (64%)

Query:    42 QKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILP 101
             +KW +   GF K GL  DD  +E   V+EA+RRLPE L NER FR  RA+ L+++  ILP
Sbjct:    18 RKWYYNACGFNKLGLMRDDTIDEGSDVKEAVRRLPEPLYNERVFRLKRAMDLSMKHQILP 77

Query:   102 KDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             KDQWTK+E + +YL+PY+++V         W K
Sbjct:    78 KDQWTKFEQDVKYLEPYLQEVIRERKEKEEWDK 110

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1P3M8 UQCRB "Cytochrome b-c1 complex subunit 7" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 43/94 (45%), Positives = 61/94 (64%)

Query:    41 LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 100
             ++KW +  +GF KYGL  DD   E   V+EAL+RLP+ L NER FR  RA+ L+++  IL
Sbjct:    14 IRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPKDLYNERMFRIKRALDLSLKHRIL 73

Query:   101 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             PK+QW KYE++  YL+PY+++V         W K
Sbjct:    74 PKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNK 107

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

UNIPROTKB|F1PLP2 UQCRB "Cytochrome b-c1 complex subunit 7" [Canis lupus familiaris (taxid:9615)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 44/99 (44%), Positives = 63/99 (63%)

Query:    36 YISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
             ++ G ++KW +  +GF K GL  DD   E   V+EA+RRLPE L N+R FR  RA+ L +
Sbjct:     8 WLEG-IRKWYYNAAGFNKLGLMRDDTIYENEDVKEAIRRLPENLYNDRMFRIKRALDLTM 66

Query:    96 QKSILPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
             +  ILPK+QWTKYE++  YL+PY+++V         W K
Sbjct:    67 RHQILPKEQWTKYEEDKFYLEPYLKEVIRERKEREEWAK 105

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|B7Z2R2 UQCRB "cDNA FLJ52271, moderately similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein (EC 1.10.2.2)" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/75 (50%), Positives = 52/75 (69%)

Query:    36 YISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
             ++ G ++KW +  +GF K GL  DD   E   V+EA+RRLPE L N+R FR  RA+ LN+
Sbjct:    13 WLDG-IRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNL 71

Query:    96 QKSILPKDQWTKYED 110
             +  ILPK+QWTKYE+
Sbjct:    72 KHQILPKEQWTKYEE 86

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6FSJ2	QCR7_CANGA	No assigned EC number	0.4404	0.6102	0.6484	yes	N/A
Q5RC24	QCR7_PONAB	No assigned EC number	0.5157	0.6985	0.8558	yes	N/A
P49345	QCR7_KLULA	No assigned EC number	0.4659	0.6397	0.6850	yes	N/A
P00129	QCR7_BOVIN	No assigned EC number	0.5052	0.6985	0.8558	yes	N/A
P00128	QCR7_YEAST	No assigned EC number	0.4090	0.6397	0.6850	yes	N/A
Q6BNQ5	QCR7_DEBHA	No assigned EC number	0.36	0.7279	0.7857	yes	N/A
P14927	QCR7_HUMAN	No assigned EC number	0.5263	0.6985	0.8558	yes	N/A
Q54M82	QCR7_DICDI	No assigned EC number	0.3666	0.625	0.7798	yes	N/A
Q9D855	QCR7_MOUSE	No assigned EC number	0.5157	0.6985	0.8558	yes	N/A
O74533	QCR7_SCHPO	No assigned EC number	0.4659	0.6397	0.6350	yes	N/A
Q9SUU5	QCR71_ARATH	No assigned EC number	0.3678	0.625	0.6967	yes	N/A
Q751U4	QCR7_ASHGO	No assigned EC number	0.4659	0.6397	0.6904	yes	N/A
Q6C3K7	QCR7_YARLI	No assigned EC number	0.37	0.7279	0.7734	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
pfam02271	105	pfam02271, UCR_14kD, Ubiquinol-cytochrome C reduct	6e-33

>gnl|CDD|202184 pfam02271, UCR_14kD, Ubiquinol-cytochrome C reductase complex 14kD subunit

 Score =  111 bits (279), Expect = 6e-33
 Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 41  LQKWAWEYSGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
           L KW +  SG+R+ GL YDDL   E P V+EALRRLP +    R FR  RA+QL++   +
Sbjct: 14  LAKWYFNASGYRQLGLRYDDLIPEENPDVQEALRRLPREESYARVFRIKRAMQLSLSHQL 73

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEE 131
           LPK++WTK E++  YL PYI +VE+E KE+EE
Sbjct: 74  LPKEEWTKPEEDVPYLSPYILEVEREAKEREE 105

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF02271	105	UCR_14kD: Ubiquinol-cytochrome C reductase complex	100.0
KOG3440|consensus	122		100.0

>PF02271 UCR_14kD: Ubiquinol-cytochrome C reductase complex 14kD subunit; InterPro: IPR003197 The cytochrome bd type terminal oxidases catalyse quinol dependent, Na+ independent oxygen uptake []

Probab=100.00  E-value=3.9e-48  Score=285.36  Aligned_cols=99  Identities=55%  Similarity=0.900  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHhccccccCcccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCcccC
Q psy18031         33 IFVYISGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDE  111 (136)
Q Consensus        33 ~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E-~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~EeD  111 (136)
                      +..+|+.|+++||+|++|||||||+||||++| ||+|+|||+|||+++.++|+|||+||+|||++|++||||||||+|+|
T Consensus         6 ~~~~~~~~~~~w~~n~~gyrk~GL~~DDl~~e~~~~v~eAl~RLp~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d   85 (105)
T PF02271_consen    6 WLSKFFKPLAKWYYNASGYRKYGLRYDDLLNEEDPDVQEALRRLPPDEQYDRNFRIKRAMQLSLKHQYLPKEQWTKPEED   85 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGGT--GGGGS---SHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT----GGGS--GGGS
T ss_pred             HHHHHHHHHHHHHHHhcchhhhcccHHhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCcccc
Confidence            35689999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHH
Q psy18031        112 TRYLKPYIEQVEKEFKEKEE  131 (136)
Q Consensus       112 ~~YL~PyI~EVe~E~~ER~~  131 (136)
                      ++||+|||+||++|.+||++
T Consensus        86 ~~YL~p~i~ev~~E~~Er~e  105 (105)
T PF02271_consen   86 VPYLQPYIEEVEKERKEREE  105 (105)
T ss_dssp             --SSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999986

Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. The 14 kDa (or VI) subunit of the complex is not directly involved in electron transfer, but has a role in assembly of the complex [].; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c; PDB: 3L74_F 3H1K_F 3L72_F 3H1L_S 3L71_S 3L70_S 3L73_F 3L75_F 1P84_G 3CXH_G ....

>KOG3440|consensus

Probab=100.00  E-value=4.1e-47  Score=286.22  Aligned_cols=106  Identities=49%  Similarity=0.865  Sum_probs=102.5

Q ss_pred             chhhHHHHHHHHHHHHHHhccccccCcccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCc
Q psy18031         30 THLIFVYISGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKY  108 (136)
Q Consensus        30 ~~~~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E-~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~  108 (136)
                      .+...++++.|+++|++|++|||||||+||||+.| ||+|+|||+|||.+++++|++||+||+|||++|++|||+||||+
T Consensus         8 ~~~~~~k~~~~~~~~~~nl~g~rkyGL~~DDl~~e~n~dvkeAlrRLPr~~~d~R~~Ri~RA~~Lsm~h~~LPk~ewtk~   87 (122)
T KOG3440|consen    8 KSPVLGKLFLPLRKWAYNLSGFRKYGLRYDDLYYEENEDVKEALRRLPRELYDARNYRIKRAMDLSMTHEILPKEEWTKY   87 (122)
T ss_pred             HcccchHHHHHHHHHHHHHhhhhhhCccccccccccCHHHHHHHHHCcHHHHHHHHHHHHHHHHHhhhcccCCHHHhhcc
Confidence            34566899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             ccCccChHHHHHHHHHHHHHHHHhccc
Q psy18031        109 EDETRYLKPYIEQVEKEFKEKEEWGKL  135 (136)
Q Consensus       109 EeD~~YL~PyI~EVe~E~~ER~~~d~~  135 (136)
                      +||++||+|||.||++|++||++|++.
T Consensus        88 eed~~YL~pyL~ev~~ErkERee~~~l  114 (122)
T KOG3440|consen   88 EEDVKYLEPYLAEVEAERKEREELDAL  114 (122)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
1bcc_F	109	Cytochrome Bc1 Complex From Chicken Length = 109		2e-19
1bgy_F	110	Cytochrome Bc1 Complex From Bovine Length = 110		2e-18
3h1h_F	110	Cytochrome Bc1 Complex From Chicken Length = 110		2e-18
1qcr_F	103	Crystal Structure Of Bovine Mitochondrial Cytochrom		2e-18
1sqp_F	110	Crystal Structure Analysis Of Bovine Bc1 With Myxot		2e-18
3cwb_F	110	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		6e-18
1ezv_F	125	Structure Of The Yeast Cytochrome Bc1 Complex Co- C		8e-12
2ibz_F	127	Yeast Cytochrome Bc1 Complex With Stigmatellin Leng		8e-12
1kyo_G	126	Yeast Cytochrome Bc1 Complex With Bound Substrate C		9e-12

>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken Length = 109

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 63/95 (66%)
Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF KYGL  DD   E   V+EA+RRLPE L ++R FR  RA+ LN+++ I
Sbjct: 15  GIRKWYYNAAGFNKYGLMRDDTIYENDDVKEAIRRLPENLYDDRMFRIKRALDLNMRQQI 74
Query: 100 LPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
           LPK+QWTKYE++  YL+PY+++V         W K
Sbjct: 75  LPKEQWTKYEEDVPYLEPYLKEVIRERKEREEWDK 109

>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine Length = 110

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 63/95 (66%)
Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L ++R FR  RA+ L++++ I
Sbjct: 15  GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 74
Query: 100 LPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
           LPK+QWTKYE++  YL+PY+++V         W K
Sbjct: 75  LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 109

>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken Length = 110

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 61/94 (64%)
Query: 41  LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 100
           ++KW +  +GF KYGL  DD   E   V+EAL+RLPE L NER FR  RA+ L+++  IL
Sbjct: 16  IRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPEDLYNERMFRIKRALDLSLKHRIL 75
Query: 101 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
           PK+QW KYE++  YL+PY+++V         W K
Sbjct: 76  PKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNK 109

>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 103

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 63/95 (66%)
Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L ++R FR  RA+ L++++ I
Sbjct: 8   GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 67
Query: 100 LPKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
           LPK+QWTKYE++  YL+PY+++V         W K
Sbjct: 68  LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 102

>pdb|1SQP|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol Length = 110

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 63/94 (67%)
Query: 41  LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 100
           ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L ++R FR  RA+ L++++ IL
Sbjct: 16  IRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQIL 75
Query: 101 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
           PK+QWTKYE++  YL+PY+++V         W K
Sbjct: 76  PKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 109

>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 110

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%)
Query: 41  LQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSIL 100
           ++KW +  +GF KYGL  DD   E   V+EAL+RLP+ L NER FR  RA+ L+++  IL
Sbjct: 16  IRKWYYNAAGFNKYGLMRDDTLYEDDDVKEALKRLPKDLYNERMFRIKRALDLSLKHRIL 75
Query: 101 PKDQWTKYEDETRYLKPYIEQVXXXXXXXXXWGK 134
           PK+QW KYE++  YL+PY+++V         W K
Sbjct: 76  PKEQWVKYEEDKPYLEPYLKEVIRERLEREAWNK 109

>pdb|1EZV|F Chain F, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 125

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 49  SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           +G++K GL +DDL A E P+++ ALRRLPE     R +R +RA Q  +   +LP+++W K
Sbjct: 34  AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 93
Query: 108 YEDETRYLKPYI 119
            +++  YL PYI
Sbjct: 94  AQEDVPYLLPYI 105

>pdb|2IBZ|F Chain F, Yeast Cytochrome Bc1 Complex With Stigmatellin Length = 127

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 49  SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           +G++K GL +DDL A E P+++ ALRRLPE     R +R +RA Q  +   +LP+++W K
Sbjct: 36  AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 95
Query: 108 YEDETRYLKPYI 119
            +++  YL PYI
Sbjct: 96  AQEDVPYLLPYI 107

>pdb|1KYO|G Chain G, Yeast Cytochrome Bc1 Complex With Bound Substrate Cytochrome C Length = 126

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 49  SGFRKYGLYYDDL-ANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTK 107
           +G++K GL +DDL A E P+++ ALRRLPE     R +R +RA Q  +   +LP+++W K
Sbjct: 35  AGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIK 94
Query: 108 YEDETRYLKPYI 119
            +++  YL PYI
Sbjct: 95  AQEDVPYLLPYI 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	1e-40
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	7e-39

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ... Length = 110

 Score =  130 bits (328), Expect = 1e-40
 Identities = 47/95 (49%), Positives = 70/95 (73%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L ++R FR  RA+ L++++ I
Sbjct: 15  GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 74

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           LPK+QWTKYE++  YL+PY+++V +E KE+EEW K
Sbjct: 75  LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 109

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G* Length = 126

 Score =  126 bits (318), Expect = 7e-39
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKS 98
            +       +G++K GL +DDL  E  P+++ ALRRLPE     R +R +RA Q  +   
Sbjct: 26  PVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHH 85

Query: 99  ILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL 135
           +LP+++W K +++  YL PYI + E   KEK+E   +
Sbjct: 86  LLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNI 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	100.0
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	100.0

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...

Probab=100.00  E-value=7.2e-51  Score=301.36  Aligned_cols=103  Identities=46%  Similarity=0.825  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHHhccccccCcccccCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCcccCc
Q psy18031         33 IFVYISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDET  112 (136)
Q Consensus        33 ~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~EeD~  112 (136)
                      .+.+|+.|+++||+|+||||||||+|||||+|+|+|+|||+|||+++.++|+|||+||+|||++|++|||+||||+|+|+
T Consensus         8 ~~~~~~~~~~~w~~n~sg~rk~GL~~DDl~~e~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d~   87 (110)
T 1pp9_F            8 ASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDK   87 (110)
T ss_dssp             ----CHHHHHHHHHHHHCGGGGTCCGGGGSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHhccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCCccch
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHHHHHhccc
Q psy18031        113 RYLKPYIEQVEKEFKEKEEWGKL  135 (136)
Q Consensus       113 ~YL~PyI~EVe~E~~ER~~~d~~  135 (136)
                      +||+|||+||++|++||++||++
T Consensus        88 ~YL~p~i~ev~~E~~Er~~~d~~  110 (110)
T 1pp9_F           88 SYLEPYLKEVIRERKEREEWAKK  110 (110)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999985

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*

Probab=100.00  E-value=2.1e-49  Score=299.19  Aligned_cols=104  Identities=34%  Similarity=0.646  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHHHHHHHhccccccCcccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCccc
Q psy18031         32 LIFVYISGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYED  110 (136)
Q Consensus        32 ~~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E-~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~Ee  110 (136)
                      .+..+|+.|+++||+|++|||||||+||||++| +|+|+|||+|||+++.++|+|||+||+|||++|++||||||||+||
T Consensus        18 p~l~~~~~p~~~w~~~~~g~rk~GL~~DDl~~e~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~   97 (126)
T 3cx5_G           18 PVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQE   97 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGGTCCGGGGSCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccHHhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCHHHccCCCc
Confidence            566899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHhccc
Q psy18031        111 ETRYLKPYIEQVEKEFKEKEEWGKL  135 (136)
Q Consensus       111 D~~YL~PyI~EVe~E~~ER~~~d~~  135 (136)
                      |++||+|||+||++|++||++||+.
T Consensus        98 d~~YL~p~i~ev~~E~~Er~~ld~~  122 (126)
T 3cx5_G           98 DVPYLLPYILEAEAAAKEKDELDNI  122 (126)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1ppjf_	99	f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 com	1e-40
d3cx5g1	125	f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc	2e-40

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 99

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (325), Expect = 1e-40
 Identities = 47/95 (49%), Positives = 70/95 (73%)

Query: 40  ALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSI 99
            ++KW +  +GF K GL  DD  +E   V+EA+RRLPE L ++R FR  RA+ L++++ I
Sbjct: 4   GIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQI 63

Query: 100 LPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGK 134
           LPK+QWTKYE++  YL+PY+++V +E KE+EEW K
Sbjct: 64  LPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAK 98

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (326), Expect = 2e-40
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 37  ISGALQKWAWEYSGFRKYGLYYDDLANET-PVVEEALRRLPEKLKNERHFRQLRAVQLNI 95
           +   +       +G++K GL +DDL  E  P+++ ALRRLPE     R +R +RA Q  +
Sbjct: 22  LCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTEL 81

Query: 96  QKSILPKDQWTKYEDETRYLKPYIEQVEKEFKEKEEWGKL 135
              +LP+++W K +++  YL PYI + E   KEK+E   +
Sbjct: 82  THHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNI 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1ppjf_	99	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0
d3cx5g1	125	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-53  Score=305.43  Aligned_cols=99  Identities=47%  Similarity=0.880  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhccccccCcccccCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCcccCccChH
Q psy18031         37 ISGALQKWAWEYSGFRKYGLYYDDLANETPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYEDETRYLK  116 (136)
Q Consensus        37 ~~~p~a~wy~n~sgyrk~GL~yDDLl~E~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~EeD~~YL~  116 (136)
                      |+.|+++||+|+|||||+||++||||.|||+|+|||+|||++++++|+|||+||+|||++|++|||+||||+|+|++||+
T Consensus         1 w~~p~~~w~~n~sgyrk~GL~~DDli~e~~~v~eAlrRLP~~~~~~R~~Ri~RA~~Ls~~h~~LPkeqwtk~eed~~YL~   80 (99)
T d1ppjf_           1 WLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLE   80 (99)
T ss_dssp             CHHHHHHHHHHHHCGGGGTCCGGGGCCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCCSSH
T ss_pred             CccHHHHHHHHHhhhhhhcccHhhcccCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCHHHccCCccchHHHH
Confidence            68999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q psy18031        117 PYIEQVEKEFKEKEEWGKL  135 (136)
Q Consensus       117 PyI~EVe~E~~ER~~~d~~  135 (136)
                      |||+||++|++||++||++
T Consensus        81 Pyi~ev~~E~~Er~ew~k~   99 (99)
T d1ppjf_          81 PYLKEVIRERKEREEWAKK   99 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999974

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-51  Score=309.90  Aligned_cols=104  Identities=34%  Similarity=0.646  Sum_probs=101.0

Q ss_pred             hhHHHHHHHHHHHHHHhccccccCcccccCCCC-ChHHHHHHhcCCHHHHHHHHHHHHHHHhhhhcCcCCCcccCcCccc
Q psy18031         32 LIFVYISGALQKWAWEYSGFRKYGLYYDDLANE-TPVVEEALRRLPEKLKNERHFRQLRAVQLNIQKSILPKDQWTKYED  110 (136)
Q Consensus        32 ~~~~~~~~p~a~wy~n~sgyrk~GL~yDDLl~E-~p~VqeALrRLP~~e~~~R~fRi~RA~qlSl~h~~LPkeqWtk~Ee  110 (136)
                      -+..+|+.|+++||+|+|||||+||+|||||+| +|+|+|||+|||+++.++|+|||+||+|||++|++|||+||||+||
T Consensus        17 p~l~k~~~p~a~w~~n~sgyrk~GL~~DDli~e~~~~v~eAlrRLP~~~~~~R~~Ri~RA~~LS~~h~~LPkeqwtk~ee   96 (125)
T d3cx5g1          17 PVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQE   96 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGGTCCGGGGSCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhChhhccCcHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcccCCHHHccCCcc
Confidence            346899999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHhccc
Q psy18031        111 ETRYLKPYIEQVEKEFKEKEEWGKL  135 (136)
Q Consensus       111 D~~YL~PyI~EVe~E~~ER~~~d~~  135 (136)
                      |++||+|||+||++|.+||++|||.
T Consensus        97 D~~YL~Pyi~ev~~E~~Er~eld~~  121 (125)
T d3cx5g1          97 DVPYLLPYILEAEAAAKEKDELDNI  121 (125)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999984