Psyllid ID: psy18065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHccccEEEEEccccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHccccEEEEEcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcccccEEEEccccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAEATMCRQLQNgvqalfgpsdallgphvQSICealdvphmesrldlelnskefsvnlypsqkLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQelvktpptlktemyirhanpstYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Flexible Loop (DISEMBL)
MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKtpptlktemyirhanpstyrNVLREIRQKEIFNLiidtstthisqffrav
Low Complexity Region (SEG)
MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Disordered region (IsUnstruct)
**********QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFF***
Disordered Region (DISOPRED)
*AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Disordered Region (DISEMBL)
MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Disordered Region (DISPRO)
MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
P42260	908	Glutamate receptor ionotr	yes	N/A	0.919	0.150	0.375	1e-21
P39087	908	Glutamate receptor ionotr	yes	N/A	0.919	0.150	0.375	1e-21
Q38PU3	908	Glutamate receptor ionotr	N/A	N/A	0.919	0.150	0.375	1e-21
Q13002	908	Glutamate receptor ionotr	yes	N/A	0.919	0.150	0.375	1e-21
P22756	949	Glutamate receptor ionotr	no	N/A	0.993	0.155	0.355	2e-21
Q38PU2	919	Glutamate receptor ionotr	N/A	N/A	0.959	0.155	0.366	9e-21
Q38PU4	918	Glutamate receptor ionotr	N/A	N/A	0.986	0.160	0.359	1e-20
P39086	918	Glutamate receptor ionotr	no	N/A	0.986	0.160	0.359	1e-20
Q13003	919	Glutamate receptor ionotr	no	N/A	0.959	0.155	0.366	1e-20
Q60934	836	Glutamate receptor ionotr	no	N/A	0.986	0.175	0.359	2e-20

>sp|P42260|GRIK2_RAT Glutamate receptor ionotropic, kainate 2 OS=Rattus norvegicus GN=Grik2 PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   ++  N   F V+LY
Sbjct: 91  ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 150

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
           P    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR   A+   
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 210

Query: 118 YRNVLREIRQKEIFNLIIDTS 138
            + +L+E+++ + F++I D S
Sbjct: 211 AKPLLKEMKRGKEFHVIFDCS 231

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus. Modulates cell surface expression of NETO2.
Rattus norvegicus (taxid: 10116)

>sp|P39087|GRIK2_MOUSE Glutamate receptor ionotropic, kainate 2 OS=Mus musculus GN=Grik2 PE=1 SV=4

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   ++  N   F V+LY
Sbjct: 91  ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 150

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
           P    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR   A+   
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 210

Query: 118 YRNVLREIRQKEIFNLIIDTS 138
            + +L+E+++ + F++I D S
Sbjct: 211 AKPLLKEMKRGKEFHVIFDCS 231

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus. Modulates cell surface expression of NETO2.

Mus musculus (taxid: 10090)

>sp|Q38PU3|GRIK2_MACFA Glutamate receptor ionotropic, kainate 2 OS=Macaca fascicularis GN=GRIK2 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   ++  N   F V+LY
Sbjct: 91  ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 150

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
           P    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR   A+   
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 210

Query: 118 YRNVLREIRQKEIFNLIIDTS 138
            + +L+E+++ + F++I D S
Sbjct: 211 AKPLLKEMKRGKEFHVIFDCS 231

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus (By similarity). Modulates cell surface expression of NETO2.

Macaca fascicularis (taxid: 9541)

>sp|Q13002|GRIK2_HUMAN Glutamate receptor ionotropic, kainate 2 OS=Homo sapiens GN=GRIK2 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   ++  N   F V+LY
Sbjct: 91  ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 150

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
           P    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR   A+   
Sbjct: 151 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 210

Query: 118 YRNVLREIRQKEIFNLIIDTS 138
            + +L+E+++ + F++I D S
Sbjct: 211 AKPLLKEMKRGKEFHVIFDCS 231

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus. Modulates cell surface expression of NETO2.

Homo sapiens (taxid: 9606)

>sp|P22756|GRIK1_RAT Glutamate receptor ionotropic, kainate 1 OS=Rattus norvegicus GN=Grik1 PE=1 SV=3

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 4/152 (2%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
           A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct: 92  ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 151

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPST-- 117
           P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct: 152 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 211

Query: 118 YRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
            + +L+E+++ + F +I D S    ++  + +
Sbjct: 212 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 243

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus.

Rattus norvegicus (taxid: 10116)

>sp|Q38PU2|GRIK3_MACFA Glutamate receptor ionotropic, kainate 3 OS=Macaca fascicularis GN=GRIK3 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 10/153 (6%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR-----LDLELNSKEFSV 56
           A    C QL  GV A+FGPS       VQSIC AL+VPH++ R     LD   N   F V
Sbjct: 94  ATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLD---NKDTFYV 150

Query: 57  NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--AN 114
           NLYP    L+ A  D++++L W    +VY++  GL +LQEL+  P      + IR    +
Sbjct: 151 NLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPVD 210

Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFR 147
               R +L+E+++   F +I D S T  +Q  +
Sbjct: 211 SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILK 243

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists. This receptor binds domoate > kainate >> L-glutamate = quisqualate >> AMPA = NMDA.

Macaca fascicularis (taxid: 9541)

>sp|Q38PU4|GRIK1_MACFA Glutamate receptor ionotropic, kainate 1 OS=Macaca fascicularis GN=GRIK1 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
           A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     +++K+ F +NLY
Sbjct: 92  ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLY 151

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYR 119
           P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   PS  +
Sbjct: 152 PDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQL-PSGNK 210

Query: 120 N---VLREIRQKEIFNLIIDTSTTHISQFFRAV 149
           +   +L+E+++ + F +I D S    ++  + +
Sbjct: 211 DAKPLLKEMKKGKEFYVIFDCSHETAAEILKQI 243

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus.

Macaca fascicularis (taxid: 9541)

>sp|P39086|GRIK1_HUMAN Glutamate receptor ionotropic, kainate 1 OS=Homo sapiens GN=GRIK1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
           A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     +++K+ F +NLY
Sbjct: 92  ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLY 151

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYR 119
           P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   PS  +
Sbjct: 152 PDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQL-PSGNK 210

Query: 120 N---VLREIRQKEIFNLIIDTSTTHISQFFRAV 149
           +   +L+E+++ + F +I D S    ++  + +
Sbjct: 211 DAKPLLKEMKKGKEFYVIFDCSHETAAEILKQI 243

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus.

Homo sapiens (taxid: 9606)

>sp|Q13003|GRIK3_HUMAN Glutamate receptor ionotropic, kainate 3 OS=Homo sapiens GN=GRIK3 PE=2 SV=3

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 10/153 (6%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR-----LDLELNSKEFSV 56
           A    C QL  GV A+FGPS       VQSIC AL+VPH++ R     LD   N   F V
Sbjct: 94  ATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLD---NKDTFYV 150

Query: 57  NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--AN 114
           NLYP    L+ A  D++++L W    +VY++  GL +LQEL+  P      + IR    +
Sbjct: 151 NLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPID 210

Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFR 147
               R +L+E+++   F +I D S T  +Q  +
Sbjct: 211 SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILK 243

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists. This receptor binds domoate > kainate >> L-glutamate = quisqualate >> AMPA = NMDA.

Homo sapiens (taxid: 9606)

>sp|Q60934|GRIK1_MOUSE Glutamate receptor ionotropic, kainate 1 OS=Mus musculus GN=Grik1 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R       N   F +NLY
Sbjct: 92  ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDNRDLFYINLY 151

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYR 119
           P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   PS  +
Sbjct: 152 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQL-PSGNK 210

Query: 120 N---VLREIRQKEIFNLIIDTSTTHISQFFRAV 149
           +   +L+E+++ + F +I D S    ++  + +
Sbjct: 211 DAKPLLKEMKKGKEFYVIFDCSHETAAEILKQI 243

Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
242022297	938	glutamate receptor, ionotropic kainate 2	0.959	0.152	0.699	8e-57
332020480	982	Glutamate receptor, ionotropic kainate 2	0.959	0.145	0.678	2e-56
383865939	1008	PREDICTED: glutamate receptor, ionotropi	0.959	0.141	0.678	4e-56
307214191	218	Glutamate receptor, ionotropic kainate 1	0.953	0.651	0.683	4e-56
350422773	383	PREDICTED: glutamate receptor, ionotropi	0.959	0.373	0.671	6e-56
328777632	1000	PREDICTED: glutamate receptor, ionotropi	0.959	0.143	0.671	9e-56
340713406	998	PREDICTED: glutamate receptor, ionotropi	0.959	0.143	0.671	9e-56
380015482	987	PREDICTED: glutamate receptor, ionotropi	0.959	0.144	0.671	1e-55
307176862	345	Glutamate receptor, ionotropic kainate 1	0.959	0.414	0.671	3e-55
345488319	1023	PREDICTED: glutamate receptor, ionotropi	0.959	0.139	0.678	5e-55

>gi|242022297|ref|XP_002431577.1| glutamate receptor, ionotropic kainate 2 precursor, putative [Pediculus humanus corporis] gi|212516880|gb|EEB18839.1| glutamate receptor, ionotropic kainate 2 precursor, putative [Pediculus humanus corporis]

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 124/143 (86%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           CRQL+NG+QA+FGP+D LLG H+QSICEALDVPHME+RLD E   KEFS+NL+PSQ+ LN
Sbjct: 86  CRQLENGIQAIFGPTDPLLGAHIQSICEALDVPHMEARLDFEPFLKEFSINLHPSQQHLN 145

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AF+D++ FLNWTKVAI+YEED GLFKLQ+LVK+PP  K EMYIR ANP+TYR+VL+EIR
Sbjct: 146 KAFQDLMIFLNWTKVAIIYEEDYGLFKLQDLVKSPPNSKMEMYIRQANPTTYRHVLKEIR 205

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
           QKEI+ L++DT+  H + FFRA+
Sbjct: 206 QKEIYKLLVDTNPVHTNVFFRAI 228

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020480|gb|EGI60895.1| Glutamate receptor, ionotropic kainate 2 [Acromyrmex echinatior]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 119/143 (83%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYP+Q  LN
Sbjct: 59  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPAQDHLN 118

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD+I FLNWT+VAI+YEED GLFKLQ+LVK+PP+++TEMYIR A P++YR VLRE+R
Sbjct: 119 TAFKDLISFLNWTRVAIIYEEDYGLFKLQDLVKSPPSVRTEMYIRQAGPASYRQVLREVR 178

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEIF LI+DT   H+ QFFRA+
Sbjct: 179 HKEIFKLIVDTDPAHMQQFFRAI 201

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865939|ref|XP_003708429.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Megachile rotundata]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 117/143 (81%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYPSQ  LN
Sbjct: 80  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPSQDHLN 139

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD++ FLNWTKVAI+YEED GLFKLQ+LVK+PP+ +TEMYIR A P +YR VLRE+R
Sbjct: 140 KAFKDLMSFLNWTKVAIIYEEDYGLFKLQDLVKSPPSTRTEMYIRQAGPGSYRQVLREVR 199

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEI+ LI+DT   H+ QFFRA+
Sbjct: 200 HKEIYKLIVDTDPAHMQQFFRAI 222

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214191|gb|EFN89308.1| Glutamate receptor, ionotropic kainate 1 [Harpegnathos saltator]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 118/142 (83%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYP+Q  LN
Sbjct: 15  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLETRVDFEPTFKEFSINLYPAQDHLN 74

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD+I FLNWT+VAI+YEED+GLFKLQ+LVK+PP+++TEMYIR A P +YR VLRE+R
Sbjct: 75  KAFKDLISFLNWTRVAIIYEEDHGLFKLQDLVKSPPSVRTEMYIRQAGPRSYRQVLREVR 134

Query: 127 QKEIFNLIIDTSTTHISQFFRA 148
            KEIF LI+DT   H+ QFFRA
Sbjct: 135 HKEIFKLIVDTDPAHMQQFFRA 156

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422773|ref|XP_003493278.1| PREDICTED: glutamate receptor, ionotropic kainate 1-like [Bombus impatiens]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 117/143 (81%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYPSQ  LN
Sbjct: 80  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPSQDHLN 139

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD++ FLNWT+VAI+YEED GLFKLQ+LVK+PP+ +TEMYIR A P +YR VLRE+R
Sbjct: 140 KAFKDLMSFLNWTRVAIIYEEDYGLFKLQDLVKSPPSARTEMYIRQAGPGSYRQVLREVR 199

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEI+ LI+DT   H+ QFFRA+
Sbjct: 200 HKEIYKLIVDTDPAHMQQFFRAI 222

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777632|ref|XP_003249376.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Apis mellifera]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 117/143 (81%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYPSQ  LN
Sbjct: 80  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPSQDHLN 139

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD++ FLNWT+VAI+YEED GLFKLQ+LVK+PP+ +TEMYIR A P +YR VLRE+R
Sbjct: 140 KAFKDLMSFLNWTRVAIIYEEDYGLFKLQDLVKSPPSARTEMYIRQAGPGSYRQVLREVR 199

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEI+ LI+DT   H+ QFFRA+
Sbjct: 200 HKEIYKLIVDTDPAHMQQFFRAI 222

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713406|ref|XP_003395234.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Bombus terrestris]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 117/143 (81%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYPSQ  LN
Sbjct: 80  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPSQDHLN 139

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD++ FLNWT+VAI+YEED GLFKLQ+LVK+PP+ +TEMYIR A P +YR VLRE+R
Sbjct: 140 KAFKDLMSFLNWTRVAIIYEEDYGLFKLQDLVKSPPSARTEMYIRQAGPGSYRQVLREVR 199

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEI+ LI+DT   H+ QFFRA+
Sbjct: 200 HKEIYKLIVDTDPAHMQQFFRAI 222

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015482|ref|XP_003691730.1| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Apis florea]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 117/143 (81%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYPSQ  LN
Sbjct: 65  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPSQDHLN 124

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD++ FLNWT+VAI+YEED GLFKLQ+LVK+PP+ +TEMYIR A P +YR VLRE+R
Sbjct: 125 KAFKDLMSFLNWTRVAIIYEEDYGLFKLQDLVKSPPSARTEMYIRQAGPGSYRQVLREVR 184

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEI+ LI+DT   H+ QFFRA+
Sbjct: 185 HKEIYKLIVDTDPAHMQQFFRAI 207

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176862|gb|EFN66206.1| Glutamate receptor, ionotropic kainate 1 [Camponotus floridanus]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 117/143 (81%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGPSD LLG H+QSICEALDVPH+E+R+D E   KEFS+NLYP+   LN
Sbjct: 55  CKQLSRSVQGIFGPSDPLLGAHIQSICEALDVPHLEARVDFEPTFKEFSINLYPAPDHLN 114

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AFKD++ FLNWT+VAI+YEED GLFKLQ+LVK+PP+++TEMYIR A P +YR VLRE+R
Sbjct: 115 KAFKDLMSFLNWTRVAIIYEEDYGLFKLQDLVKSPPSVRTEMYIRQAGPRSYRQVLREVR 174

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEIF LIIDT   H+ QFFRA+
Sbjct: 175 HKEIFKLIIDTDPAHMQQFFRAI 197

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488319|ref|XP_001605775.2| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Nasonia vitripennis]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 118/143 (82%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C+QL   VQ +FGP+D LLG H+QSICEALDVPH+E+R+D E + KEFS+NLYPSQ  LN
Sbjct: 80  CKQLSRSVQGIFGPADPLLGAHIQSICEALDVPHLEARVDFEPSFKEFSINLYPSQDHLN 139

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIR 126
            AF+D++ FLNWTKVAI+YEED GLFKLQ+LVK+PP+ KTEMYIR A P +YR VLREIR
Sbjct: 140 RAFRDLMSFLNWTKVAIIYEEDYGLFKLQDLVKSPPSPKTEMYIRQAGPGSYRQVLREIR 199

Query: 127 QKEIFNLIIDTSTTHISQFFRAV 149
            KEI+ LIIDT   ++ QFFRA+
Sbjct: 200 HKEIYKLIIDTDPMYMPQFFRAI 222

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0039927	910	CG11155 [Drosophila melanogast	0.946	0.154	0.618	1e-44
FB|FBgn0039916	899	CG9935 [Drosophila melanogaste	0.865	0.143	0.405	3.7e-25
FB|FBgn0038837	853	CG3822 [Drosophila melanogaste	0.953	0.166	0.342	1.1e-20
UNIPROTKB|F1M526	832	Grik1 "Glutamate receptor iono	0.993	0.177	0.355	4.5e-20
UNIPROTKB|D4ACE2	834	Grik1 "Glutamate receptor iono	0.993	0.177	0.355	4.5e-20
UNIPROTKB|F1LTY2	834	Grik1 "Glutamate receptor iono	0.993	0.177	0.355	4.5e-20
UNIPROTKB|F1M4T4	883	Grik1 "Glutamate receptor iono	0.993	0.167	0.355	5e-20
UNIPROTKB|F1M4B0	895	Grik1 "Glutamate receptor iono	0.993	0.165	0.355	5.1e-20
UNIPROTKB|F1M5R4	912	Grik1 "Glutamate receptor iono	0.993	0.162	0.355	5.2e-20
RGD|2732	949	Grik1 "glutamate receptor, ion	0.993	0.155	0.355	5.6e-20

FB|FBgn0039927 CG11155 [Drosophila melanogaster (taxid:7227)]

 Score = 479 (173.7 bits), Expect = 1.0e-44, P = 1.0e-44
 Identities = 89/144 (61%), Positives = 113/144 (78%)

Query:     6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
             +C QL+ GVQA+FGP+DALL  HVQSICEA D+PH+E R+DLE NSKEFS+NLYPS  LL
Sbjct:   100 VCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSKEFSINLYPSHTLL 159

Query:    66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREI 125
               A++D++ +LNWTKVAI+YEED GLF L     +  T K EMYIR A+P +YR VLR I
Sbjct:   160 TLAYRDIMVYLNWTKVAIIYEEDYGLFNLMH--SSTET-KAEMYIRQASPDSYRQVLRAI 216

Query:   126 RQKEIFNLIIDTSTTHISQFFRAV 149
             RQKEI+ +I+DT+ +HI  FFR++
Sbjct:   217 RQKEIYKIIVDTNPSHIKSFFRSI 240

GO:0015277 "kainate selective glutamate receptor activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0060025 "regulation of synaptic activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

FB|FBgn0039916 CG9935 [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 56/138 (40%), Positives = 98/138 (71%)

Query:     6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
             +C+ ++ GVQA+F P+D++L  H+ SIC+ALD+P++  R     ++ +FS+N+YPS++L+
Sbjct:    80 VCKLIRVGVQAVFSPTDSVLATHINSICDALDIPNI-GR-----SAHDFSINVYPSKQLV 133

Query:    66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREI 125
             N AF DVI++LNWT+  I++E++NG+  L +L ++      E+++R  +  +Y + L E 
Sbjct:   134 NYAFNDVIQYLNWTRFGILHEKENGIINLHQLSRS---FHGEVHMRQVSRDSYVSALNEF 190

Query:   126 RQKEIFNLIIDTSTTHIS 143
             + KEI N+IIDT++  IS
Sbjct:   191 KGKEIHNIIIDTNSNGIS 208

GO:0015277 "kainate selective glutamate receptor activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS

GO:0060025 "regulation of synaptic activity" evidence=ISS

FB|FBgn0038837 CG3822 [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 49/143 (34%), Positives = 82/143 (57%)

Query:     6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
             +C  L  GV A+FGP  +    HVQSIC+ +++PH+E+R D  L  +   VNLYP    L
Sbjct:    85 VCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHLENRWDYRLRRESCLVNLYPHPNTL 144

Query:    66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS-TYRNVLRE 124
             + A+ D++R   W    I+YE ++G+ +LQEL+K        + +R  + S  YR +L++
Sbjct:   145 SKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPITVRQLSDSGDYRPLLKQ 204

Query:   125 IRQKEIFNLIIDTSTTHISQFFR 147
             I+     ++++D ST  I +  +
Sbjct:   205 IKNSAEAHIVLDCSTERIHEVLK 227

GO:0015277 "kainate selective glutamate receptor activity" evidence=ISS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS

GO:0060025 "regulation of synaptic activity" evidence=ISS

UNIPROTKB|F1M526 Grik1 "Glutamate receptor ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    53 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 112

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:   113 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 172

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   173 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 204

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|D4ACE2 Grik1 "Glutamate receptor ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    21 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 80

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:    81 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 140

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   141 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 172

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1LTY2 Grik1 "Glutamate receptor ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    53 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 112

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:   113 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 172

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   173 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 204

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1M4T4 Grik1 "Glutamate receptor ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    53 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 112

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:   113 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 172

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   173 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 204

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1M4B0 Grik1 "Glutamate receptor ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 5.1e-20, P = 5.1e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    53 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 112

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:   113 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 172

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   173 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 204

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0014054 "positive regulation of gamma-aminobutyric acid secretion" evidence=IEA

GO:0015277 "kainate selective glutamate receptor activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA

GO:0032230 "positive regulation of synaptic transmission, GABAergic" evidence=IEA

GO:0032983 "kainate selective glutamate receptor complex" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=IEA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=IEA

GO:0060080 "regulation of inhibitory postsynaptic membrane potential" evidence=IEA

UNIPROTKB|F1M5R4 Grik1 "Glutamate receptor ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    53 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 112

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:   113 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 172

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   173 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 204

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|2732 Grik1 "glutamate receptor, ionotropic, kainate 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 54/152 (35%), Positives = 88/152 (57%)

Query:     2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKE-FSVNLY 59
             A    C QL  GV ALFGPS +     VQSIC AL+VPH+++R     ++S++ F +NLY
Sbjct:    92 ASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLY 151

Query:    60 PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTY- 118
             P    ++ A  D++ + NW  V +VYE+  GL +LQEL+K P     ++ IR   P+   
Sbjct:   152 PDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKD 211

Query:   119 -RNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
              + +L+E+++ + F +I D S    ++  + +
Sbjct:   212 AKPLLKEMKKSKEFYVIFDCSHETAAEILKQI 243

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA;IDA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007399 "nervous system development" evidence=IMP

GO:0008144 "drug binding" evidence=IDA

GO:0008328 "ionotropic glutamate receptor complex" evidence=IDA

GO:0014054 "positive regulation of gamma-aminobutyric acid secretion" evidence=ISO

GO:0015277 "kainate selective glutamate receptor activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016595 "glutamate binding" evidence=IDA

GO:0022843 "voltage-gated cation channel activity" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO;IDA

GO:0030534 "adult behavior" evidence=ISO

GO:0032229 "negative regulation of synaptic transmission, GABAergic" evidence=IDA

GO:0032230 "positive regulation of synaptic transmission, GABAergic" evidence=ISO;IDA

GO:0032983 "kainate selective glutamate receptor complex" evidence=ISO

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISO;IDA

GO:0035249 "synaptic transmission, glutamatergic" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043195 "terminal bouton" evidence=IDA

GO:0043235 "receptor complex" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=TAS

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA

GO:0048266 "behavioral response to pain" evidence=ISO

GO:0051899 "membrane depolarization" evidence=ISO

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=ISO;IDA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=ISO

GO:0060080 "regulation of inhibitory postsynaptic membrane potential" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
cd06382	327	cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is	2e-49
cd06368	324	cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc	6e-42
cd06393	384	cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal le	4e-26
cd06351	328	cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci	1e-25
cd06269	298	cd06269, PBP1_glutamate_receptors_like, Family C G	9e-15
pfam01094	343	pfam01094, ANF_receptor, Receptor family ligand bi	1e-14
cd06394	333	cd06394, PBP1_iGluR_Kainate_KA1_2, N-terminal leuc	5e-11
cd04509	299	cd04509, PBP1_ABC_transporter_GCPR_C_like, Family	2e-10
cd06380	382	cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole	3e-09
cd06389	370	cd06389, PBP1_iGluR_AMPA_GluR2, N-terminal leucine	4e-07
cd06390	364	cd06390, PBP1_iGluR_AMPA_GluR1, N-terminal leucine	4e-07
cd01391	269	cd01391, Periplasmic_Binding_Protein_Type_1, Type	3e-06
cd06383	368	cd06383, PBP1_iGluR_AMPA_Like, N-terminal leucine/	2e-05
cd06388	371	cd06388, PBP1_iGluR_AMPA_GluR4, N-terminal leucine	1e-04
cd06381	363	cd06381, PBP1_iGluR_delta_like, N-terminal leucine	1e-04
cd06387	372	cd06387, PBP1_iGluR_AMPA_GluR3, N-terminal leucine	1e-04
cd06374	472	cd06374, PBP1_mGluR_groupI, Ligand binding domain	4e-04

>gnl|CDD|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

 Score =  160 bits (408), Expect = 2e-49
 Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 2/149 (1%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKE-FSVNLYP 60
               +C  LQ GV A+FGPS +     VQSIC+A ++PH+++R D E  S   F++NLYP
Sbjct: 52  TTKKVCDLLQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQTRWDPEPKSNRQFTINLYP 111

Query: 61  SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR-HANPSTYR 119
           S   L+ A+ D+++  NW    I+YE   GL +LQEL++        + +R   +   YR
Sbjct: 112 SNADLSRAYADIVKSFNWKSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYR 171

Query: 120 NVLREIRQKEIFNLIIDTSTTHISQFFRA 148
            +L+EI+      +IID S   + +  + 
Sbjct: 172 PLLKEIKNSGDNRIIIDCSADILIELLKQ 200

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined. Length = 327

>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

 Score =  141 bits (357), Expect = 6e-42
 Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 2/147 (1%)

Query: 5   TMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKL 64
             C  L  GV A+FGPS +     VQSIC+AL++PH+ +        ++F++NLYPS + 
Sbjct: 54  KACDLLSQGVAAIFGPSSSSSANTVQSICDALEIPHITTSWSPNPKPRQFTINLYPSMRD 113

Query: 65  LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR--HANPSTYRNVL 122
           L+ A  D+I++  W K   +Y+ D GL +LQEL+        ++ +R    +   YR +L
Sbjct: 114 LSDALLDLIKYFGWRKFVYIYDSDEGLLRLQELLDALSPKGIQVTVRRLDDDTDMYRPLL 173

Query: 123 REIRQKEIFNLIIDTSTTHISQFFRAV 149
           +EI++++   +I+D S   + +F    
Sbjct: 174 KEIKREKERRIILDCSPERLKEFLEQA 200

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. Non-NMDA receptors have faster kinetics, are most often only weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute several forms of synaptic plasticity and are thought to play an important role in the development of synaptic pathways. Non-NMDA receptors include alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate (AMPA) and kainate receptors. Length = 324

>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

 Score =  100 bits (251), Expect = 4e-26
 Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR-----LDLELNSKEFSV 56
           A    C QL  GV A+FGPS       VQSIC AL+VPH++ R     LD   N   F V
Sbjct: 61  ATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLD---NKDTFYV 117

Query: 57  NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS 116
           NLYP    L+ A  D++++L W    +VY++  GL +LQEL+  P      + IR     
Sbjct: 118 NLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPTD 177

Query: 117 T--YRNVLREIRQKEIFNLIIDTSTTHISQFFR 147
           +   R +L+E+++   F +I D S    +Q  +
Sbjct: 178 SDDARPLLKEMKRGREFRIIFDCSHQMAAQILK 210

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined. Length = 384

>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 8/152 (5%)

Query: 6   MCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPH----MESRLDLELNSKEFSVNLYP 60
           +C  L + GV A+FGP+ +     VQSIC+AL++PH      S    +      ++ LYP
Sbjct: 55  VCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYP 114

Query: 61  SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTP-PTLKTEMYIRHANP-STY 118
           S + L  A  D++ + NWTK AI+Y+ D GL +LQEL+             R       Y
Sbjct: 115 SLEDLADALLDLLEYYNWTKFAIIYDSDEGLSRLQELLDESGIKGIQVTVRRLDLDDDNY 174

Query: 119 RNVLREIRQKEIFNLIIDTSTT-HISQFFRAV 149
           R +L+E+++ E   +I+D S+     +     
Sbjct: 175 RQLLKELKRSESRRIILDCSSEEEAKEILEQA 206

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. On the other hand, non-NMDA receptors have faster kinetics, are weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute to several forms of synaptic plasticity and are suggested to play an important role in the development of synaptic pathways. Length = 328

>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

 Score = 69.1 bits (169), Expect = 9e-15
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 6   MCRQL--QNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE---FSVNLY 59
           +C  L    GV A+ GPS +     V S+  AL +P +  S     L+ KE     +   
Sbjct: 62  LCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTV 121

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH------- 112
           PS      A  D+++   WT V +VY +D+   +L EL      L+ E+           
Sbjct: 122 PSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLLEL------LEEELEKNGICVAFVE 175

Query: 113 ---ANPSTYRNVLREIRQKEIFNLIID-TSTTHISQFFRAV 149
                    R +L+E++      +I+  +S     +     
Sbjct: 176 SIPDGSEDIRRLLKELKSSTA-RVIVVFSSEEDALRLLEEA 215

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G). Length = 298

>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 4   ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE---FSVNLY 59
           A  C     GV A+ GPS + +   V  +  A  +P +       EL+ K          
Sbjct: 41  AAACLLKSKGVVAVIGPSCSSVAIAVARLAGAFGIPMISYGATSPELSDKTRYPTFARTV 100

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEED----NGLFKLQELVKT---PPTLKTEMYIRH 112
           PS      A  D+++   W +VA++Y++D     GL  L++ ++             I  
Sbjct: 101 PSDSKQARAIADILKHFGWKRVAVIYDDDDYGEGGLEALEDALREAGLNVVAVASEVI-- 158

Query: 113 ANPSTYRNVLREIRQ--KEIFNLIIDTSTTHISQFFRA 148
           A+   +  +L+E++    +   +++  S+  + Q  R 
Sbjct: 159 ASDDDFTALLKELKDIKSKARVIVVCGSSDDLRQILRQ 196

This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343

>gnl|CDD|107389 cd06394, PBP1_iGluR_Kainate_KA1_2, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 5   TMCRQLQNGVQALFGPSDA-LLGPHVQSICEALDVPHM----ESRLDLELNSKEFSVNLY 59
           TMC+ L  GV ++ GPS +      V  IC   ++PH     E    L+   +  SVNL+
Sbjct: 57  TMCQILPKGVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPEETPKLQY-LRFASVNLH 115

Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVK----TPPTLKTEMYIRHANP 115
           PS + ++ A   ++   N+   +++  +   L +L+EL++    +  TL   M     +P
Sbjct: 116 PSNEDISVAVAGILNSFNYPTASLICAKAECLLRLEELLRQFLISKETLSVRMLDDSRDP 175

Query: 116 STYRNVLREIRQKEIFNLIIDTSTT 140
           +    +L+EIR  +   +IID + +
Sbjct: 176 TP---LLKEIRDDKTATIIIDANAS 197

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMPA receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined. Length = 333

>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 11  QNGVQALFGPSDALLGPHVQSICEALDVPHME--SRLDLELNSKEFS--VNLYPSQKLLN 66
           Q GV AL GP  + +   V  + EAL +P +   +      + K +       PS +   
Sbjct: 65  QEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQA 124

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTP-----PTLKTEMYIRHANPSTYRNV 121
            A  D I+  NW KVAI+Y++D+    L E  K        T+  E Y      + + ++
Sbjct: 125 EALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYY-PLGTTDFTSL 183

Query: 122 LREIRQKEIFNLIIDTST-THISQFFRAV 149
           L++++  +  ++I+   +    +   +  
Sbjct: 184 LQKLKAAK-PDVIVLCGSGEDAATILKQA 211

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4- isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine-binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus - which is included in this CD - followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type II periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 299

>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 15/143 (10%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPH----MESRLDLELNSKEFSVNLYPSQ 62
           C QL  GV A+FG  D      + S  +AL VP       +    + N   F + + PS 
Sbjct: 56  CSQLSRGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQ--FVLQMRPS- 112

Query: 63  KLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQ---ELVKTPPTLKTEMYIRHANPST-- 117
             L  A  D+I    W KV  +Y+ D GL +LQ   + ++           R  N +   
Sbjct: 113 --LIQALVDLIEHYGWRKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDNVTDEE 170

Query: 118 -YRNVLREIRQKEIFNLIIDTST 139
            +  +L ++ +++   +++D  +
Sbjct: 171 EFLRLLEDLDRRKEKRIVLDCES 193

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. Length = 382

>gnl|CDD|107384 cd06389, PBP1_iGluR_AMPA_GluR2, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C Q   GV A+FG  D      + S C  L V  +      +     F + + P    L 
Sbjct: 51  CSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT-HPFVIQMRPD---LK 106

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTYR 119
            A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N       YR
Sbjct: 107 GALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYR 166

Query: 120 NVLREIRQKEIFNLIID 136
           ++ +++  K+   +I+D
Sbjct: 167 SLFQDLENKKERRVILD 183

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). Length = 370

>gnl|CDD|107385 cd06390, PBP1_iGluR_AMPA_GluR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 5   TMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKL 64
           T C Q   GV A+FG  D      + S C AL V  +     ++  S +F + L P    
Sbjct: 48  TFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVD-TSNQFVLQLRPE--- 103

Query: 65  LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHANPSTYRNV 121
           L  A   VI    W K   +Y+ D GL  LQ+++ T        T + I       YR +
Sbjct: 104 LQDALISVIEHYKWQKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRKL 163

Query: 122 LREIRQKEIFNLIID 136
            +++ +K+   +++D
Sbjct: 164 FQDLDKKKERLIVVD 178

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). Length = 364

>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 7/149 (4%)

Query: 8   RQLQNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKEFSVNLYPSQKLLN 66
             +Q GV  + GP  +     V  +  A  +P +       +L    +   + P  +   
Sbjct: 53  DLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAG 112

Query: 67  AAFKDVIRFLNWTKVAIVYEED-NGLFKLQELVKT-----PPTLKTEMYIRHANPSTYRN 120
            A  + +    W +VA++Y +D     +  E  K         +    Y        ++ 
Sbjct: 113 EAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQA 172

Query: 121 VLREIRQKEIFNLIIDTSTTHISQFFRAV 149
           +L+ ++     + I   +    +   +A 
Sbjct: 173 LLQLLKAAPKPDAIFACNDEMAAGALKAA 201

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The core structures of periplasmic binding proteins are classified into two types, and they differ in number and order of beta strands: type 1 has six beta strands, while type 2 has five beta strands per sub-domain. These two structural folds are thought to be distantly related via a common ancestor. Notably, while the N-terminal LIVBP-like domain of iGluRs belongs to the type 1 periplasmic-binding fold protein superfamily, the glutamate-binding domain of the iGluR is structurally similar to the type 2 periplasmic-binding fold. Length = 269

>gnl|CDD|107378 cd06383, PBP1_iGluR_AMPA_Like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 38/83 (45%)

Query: 53  EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH 112
            + + L P    +  A +D++ + N T  AI+Y++D  +    + +      +  + I +
Sbjct: 108 PYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVMDHKYKSLLQNWPTRHVITIIN 167

Query: 113 ANPSTYRNVLREIRQKEIFNLII 135
           +     R  ++ +R  +I N+ I
Sbjct: 168 SIIDEVREQIKRLRNLDIKNIFI 190

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. Length = 368

>gnl|CDD|107383 cd06388, PBP1_iGluR_AMPA_GluR4, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 7/133 (5%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C Q   GV A+FG  D      + S C AL +  +      E  S +F + L PS   L 
Sbjct: 57  CSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES-QFVLQLRPS---LR 112

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPT---LKTEMYIRHANPSTYRNVLR 123
            A   ++    W +   +Y+ D G   LQ +++         + + + + N ++YR +L 
Sbjct: 113 GALLSLLDHYEWNRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFNDASYRRLLE 172

Query: 124 EIRQKEIFNLIID 136
           ++ +++    +ID
Sbjct: 173 DLDRRQEKKFVID 185

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). Length = 371

>gnl|CDD|107376 cd06381, PBP1_iGluR_delta_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHM------------ESRLDLELNSKEF 54
           C  +  G+ AL   +       +QS+ +A+ +PH+               L+     +++
Sbjct: 56  CDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQY 115

Query: 55  SVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQEL 97
           ++ L P  + LN     ++    W K    Y+ D  +  LQE 
Sbjct: 116 TLALRPPVR-LNDVMLRLVTEWRWQKFVYFYDNDYDIRGLQEF 157

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq, and the tumor necrosis factor family which is secreted from cerebellar granule cells. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans. Length = 363

>gnl|CDD|107382 cd06387, PBP1_iGluR_AMPA_GluR3, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 7   CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 66
           C Q   GV A+FG  D +    + S C AL    +      + +  +F + + P+   L 
Sbjct: 57  CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADV-QFVIQMRPA---LK 112

Query: 67  AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA----NPSTYRNVL 122
            A   ++    W K   +Y+ + G   LQ +++       ++  R      +   +R ++
Sbjct: 113 GAILSLLAHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRII 172

Query: 123 REIRQKEIFNLIIDTSTTHISQFFRAV 149
            E+ +++    +ID     I+     V
Sbjct: 173 EEMDRRQEKRYLIDCEVERINTILEQV 199

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). Length = 372

>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 20/130 (15%)

Query: 14  VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE---FSVNLYPSQKLLNAAF 69
           +  + GP  + +   VQ++ +  ++P +  S   ++L+ K    + + + PS  L   A 
Sbjct: 118 IVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAM 177

Query: 70  KDVIRFLNWTKVAIVYEEDN----GLFKLQELVKTPPTLKTEMYIRH-------ANPSTY 118
            D+++  NWT V+ V+ E N    G+   +EL          + I H       A   ++
Sbjct: 178 LDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAA-----HEGLCIAHSDKIYSNAGEQSF 232

Query: 119 RNVLREIRQK 128
             +LR++R +
Sbjct: 233 DRLLRKLRSR 242

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 472

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
cd06387	372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	99.97
cd06390	364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	99.97
cd06394	333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	99.97
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	99.97
cd06383	368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	99.96
cd06389	370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	99.96
cd06388	371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	99.96
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	99.95
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	99.95
cd06377	382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	99.94
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	99.93
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	99.93
cd06351	328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	99.93
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	99.93
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	99.93
cd06368	324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	99.93
cd06381	363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	99.93
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	99.93
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	99.93
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	99.93
cd06378	362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	99.92
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	99.92
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	99.92
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	99.91
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	99.91
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	99.91
cd06350	348	PBP1_GPCR_family_C_like Ligand-binding domain of m	99.9
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	99.9
cd06269	298	PBP1_glutamate_receptors_like Family C G-protein c	99.9
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	99.9
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	99.89
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	99.89
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	99.88
PF01094	348	ANF_receptor: Receptor family ligand binding regio	99.88
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	99.88
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	99.87
cd06384	399	PBP1_NPR_B Ligand-binding domain of type B natriur	99.86
KOG1056|consensus	878		99.85
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	99.85
KOG1054|consensus	897		99.81
cd06346	312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	99.8
cd06338	345	PBP1_ABC_ligand_binding_like_5 Type I periplasmic	99.8
cd06345	344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	99.8
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	99.79
cd06340	347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	99.79
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	99.76
cd06348	344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	99.74
cd06335	347	PBP1_ABC_ligand_binding_like_2 Type I periplasmic	99.72
cd06330	346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	99.71
cd06331	333	PBP1_AmiC_like Type I periplasmic components of am	99.71
cd06329	342	PBP1_SBP_like_3 Periplasmic solute-binding domain	99.71
cd04509	299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	99.71
cd06343	362	PBP1_ABC_ligand_binding_like_8 Type I periplasmic	99.71
cd06349	340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	99.7
cd06336	347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	99.69
cd06344	332	PBP1_ABC_ligand_binding_like_9 Type I periplasmic	99.69
PRK15404	369	leucine ABC transporter subunit substrate-binding	99.68
cd06327	334	PBP1_SBP_like_1 Periplasmic solute-binding domain	99.65
cd06359	333	PBP1_Nba_like Type I periplasmic binding component	99.63
cd06360	336	PBP1_alkylbenzenes_like Type I periplasmic binding	99.62
cd06268	298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	99.62
cd06355	348	PBP1_FmdD_like Periplasmic component (FmdD) of an	99.6
cd06358	333	PBP1_NHase Type I periplasmic-binding protein of t	99.6
cd06339	336	PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin	99.59
cd06328	333	PBP1_SBP_like_2 Periplasmic solute-binding domain	99.57
cd06326	336	PBP1_STKc_like Type I periplasmic binding domain o	99.57
cd06334	351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	99.57
COG0683	366	LivK ABC-type branched-chain amino acid transport	99.56
cd06337	357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	99.55
cd06332	333	PBP1_aromatic_compounds_like Type I periplasmic bi	99.53
cd06333	312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	99.53
TIGR03669	374	urea_ABC_arch urea ABC transporter, substrate-bind	99.52
PF13458	343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	99.52
cd06356	334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	99.51
cd06369	380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	99.51
TIGR03407	359	urea_ABC_UrtA urea ABC transporter, urea binding p	99.49
cd06357	360	PBP1_AmiC Periplasmic binding domain of amidase (A	99.38
TIGR03863	347	PQQ_ABC_bind ABC transporter, substrate binding pr	99.33
cd06341	341	PBP1_ABC_ligand_binding_like_7 Type I periplasmic	99.28
KOG4440|consensus	993		99.21
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	99.19
KOG1055|consensus	865		99.12
KOG1053|consensus	1258		98.71
PF13433	363	Peripla_BP_5: Periplasmic binding protein domain;	98.2
PF04348	536	LppC: LppC putative lipoprotein; InterPro: IPR0074	97.66
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	97.58
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	97.47
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	97.45
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	97.37
cd01536	267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	97.28
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	96.92
cd06273	268	PBP1_GntR_like_1 This group includes the ligand-bi	96.41
cd06325	281	PBP1_ABC_uncharacterized_transporter Type I peripl	96.3
cd06319	277	PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b	96.25
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	96.22
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	95.87
cd06278	266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	95.64
cd06309	273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	95.63
cd06317	275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	95.6
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	95.01
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	94.98
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	94.95
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	94.89
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	94.54
PRK10014	342	DNA-binding transcriptional repressor MalI; Provis	94.5
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	94.23
TIGR01481	329	ccpA catabolite control protein A. Catabolite cont	94.16
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	94.01
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	93.95
cd06310	273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	93.9
cd06313	272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	93.74
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	93.56
PF00532	279	Peripla_BP_1: Periplasmic binding proteins and sug	93.05
cd06322	267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	92.97
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	92.62
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	92.56
cd06271	268	PBP1_AglR_RafR_like Ligand-binding domain of DNA t	92.15
cd06311	274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	91.95
COG2984	322	ABC-type uncharacterized transport system, peripla	91.89
PRK11303	328	DNA-binding transcriptional regulator FruR; Provis	91.71
COG1609	333	PurR Transcriptional regulators [Transcription]	91.42
cd01574	264	PBP1_LacI Ligand-binding domain of DNA transcripti	91.35
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	91.31
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	91.23
TIGR02417	327	fruct_sucro_rep D-fructose-responsive transcriptio	91.2
PRK09756	158	PTS system N-acetylgalactosamine-specific transpor	90.37
cd06295	275	PBP1_CelR Ligand binding domain of a transcription	90.15
cd06277	268	PBP1_LacI_like_1 Ligand-binding domain of uncharac	90.07
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	90.05
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	90.03
cd06299	265	PBP1_LacI_like_13 Ligand-binding domain of DNA-bin	89.88
cd06280	263	PBP1_LacI_like_4 Ligand-binding domain of uncharac	89.21
PRK11425	157	PTS system N-acetylgalactosamine-specific transpor	89.05
cd06288	269	PBP1_sucrose_transcription_regulator Ligand-bindin	88.91
cd06291	265	PBP1_Qymf_like Ligand binding domain of the lacI-l	88.07
TIGR00854	151	pts-sorbose PTS system, mannose/fructose/sorbose f	88.04
cd06290	265	PBP1_LacI_like_9 Ligand-binding domain of uncharac	87.74
cd06294	270	PBP1_ycjW_transcription_regulator_like Ligand-bind	87.6
cd00001	151	PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose s	87.31
cd06293	269	PBP1_LacI_like_11 Ligand-binding domain of unchara	86.82
cd06279	283	PBP1_LacI_like_3 Ligand-binding domain of uncharac	86.68
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	85.91
cd06274	264	PBP1_FruR Ligand binding domain of DNA transcripti	85.71
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	85.0
cd06272	261	PBP1_hexuronate_repressor_like Ligand-binding doma	84.63
PRK10423	327	transcriptional repressor RbsR; Provisional	84.6
PF03830	151	PTSIIB_sorb: PTS system sorbose subfamily IIB comp	84.19
cd01575	268	PBP1_GntR Ligand-binding domain of DNA transcripti	84.08
PRK10727	343	DNA-binding transcriptional regulator GalR; Provis	84.07
cd06286	260	PBP1_CcpB_like Ligand-binding domain of a novel tr	83.97
PRK09526	342	lacI lac repressor; Reviewed	83.47
cd06283	267	PBP1_RegR_EndR_KdgR_like Ligand-binding domain of	83.32
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	83.1
PF04392	294	ABC_sub_bind: ABC transporter substrate binding pr	82.83
PLN02674	244	adenylate kinase	82.56
cd01543	265	PBP1_XylR Ligand-binding domain of DNA transcripti	81.99
COG0426	388	FpaA Uncharacterized flavoproteins [Energy product	81.17
PTZ00088	229	adenylate kinase 1; Provisional	80.87
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	80.72
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	80.62
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	80.48
cd06285	265	PBP1_LacI_like_7 Ligand-binding domain of uncharac	80.13

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

Probab=99.97  E-value=5.9e-31  Score=198.00  Aligned_cols=144  Identities=20%  Similarity=0.427  Sum_probs=130.0

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +++++|+++++||.||+||+++.++.+++++|+.++||+|++.++. ....+|.++++|+   ++.|+++++++|||++|
T Consensus        52 ~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~-~~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~  127 (372)
T cd06387          52 VTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPT-DADVQFVIQMRPA---LKGAILSLLAHYKWEKF  127 (372)
T ss_pred             HHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCC-CCCCceEEEEChh---HHHHHHHHHHhcCCCEE
Confidence            6789999999999999999999999999999999999999987653 2455889999998   89999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEecC----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++|++++|+.++|++.+.....+..+..+.+.    ..+++.+|++|++++.++|||+|+++.+..+|+||
T Consensus       128 ~~iYd~d~gl~~Lq~L~~~~~~~~~~V~~~~v~~~~~~~~~~~~l~el~~~~~r~iIld~s~~~~~~il~~a  199 (372)
T cd06387         128 VYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQV  199 (372)
T ss_pred             EEEecCchhHHHHHHHHHhhccCCceEEEEEeccCCchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHH
Confidence            999998999999999999988888777655542    25789999999999999999999999999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

Probab=99.97  E-value=6e-31  Score=197.77  Aligned_cols=144  Identities=24%  Similarity=0.451  Sum_probs=129.0

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+++|+++++||.|||||.++.++.+|+++|+.++||+|+++++. ....+|+++++|+   +.+|+++++++|||++|
T Consensus        45 ~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~-~~~~~~~i~~~P~---~~~Ai~diI~~~~W~~v  120 (364)
T cd06390          45 MTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPV-DTSNQFVLQLRPE---LQDALISVIEHYKWQKF  120 (364)
T ss_pred             HHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCC-CCCCceEEEeChh---HHHHHHHHHHHcCCcEE
Confidence            6789999999999999999999999999999999999999987632 2445778999998   89999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEec---CCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA---NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~---~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++||++++|..+++.+.+.+...|+++.....   +..+++++|++|++++.++||++|+.+.+..+|+||
T Consensus       121 ~iIYd~d~g~~~lq~l~~~~~~~~~~I~~~~~~~~~~~d~~~~L~~ik~~~~rvIVl~~~~~~~~~~L~~a  191 (364)
T cd06390         121 VYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRKLFQDLDKKKERLIVVDCESERLNAILNQI  191 (364)
T ss_pred             EEEEeCCccHHHHHHHHHhhhccCceeeEEEeecCChHHHHHHHHhccccCCeEEEEECCHHHHHHHHHHH
Confidence            99999899999999999999888988865333   235899999999999999999999999999998875

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

Probab=99.97  E-value=2.7e-29  Score=186.54  Aligned_cols=148  Identities=25%  Similarity=0.451  Sum_probs=127.7

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCc-HHHHHHhhcccCCCceeeccC--CCCCCccc-EEEecCChhHHHHHHHHHHHhcC
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALL-GPHVQSICEALDVPHMESRLD--LELNSKEF-SVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~-~~~v~~~~~~~~iP~is~~~~--~~~~~~~~-~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      ++.++|.++++||.|||||.+|.. +.+++++|+..+||+|+++++  +.....+| .++++|++..+.+|+++++++||
T Consensus        54 ~~~~~~~~l~~gV~AIiGp~ss~~~~~~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~i~l~P~~~~~~~Ai~dli~~~~  133 (333)
T cd06394          54 TTDTMCQILPKGVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPEETPKLQYLRFASVNLHPSNEDISVAVAGILNSFN  133 (333)
T ss_pred             HHHHHHHHHhcCeEEEECCCCchHHHHHHHHHhhccCCceEEeccccCcccccccceEEEecCCHHHHHHHHHHHHHhcC
Confidence            467789999999999999999975 579999999999999998864  22223344 58999999999999999999999


Q ss_pred             CcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|++||++++++.+|+++++....++..+.++..+ ..|++.+|++|+++++++||++|+.+.+..+++||
T Consensus       134 W~~v~~iYe~d~~l~~L~~~l~~~~~~~~~i~~~~~~~~~d~~~~L~~ik~~~~~~iVv~~~~~~a~~il~qa  206 (333)
T cd06394         134 YPTASLICAKAECLLRLEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDANASMSHTILLKA  206 (333)
T ss_pred             CCEEEEEEeCcHHHHHHHHHHHhhcccCCceeeEEccCcccHHHHHHHHHhcCCCEEEEECChHHHHHHHHHH
Confidence            9999999999999999999888765555566665554 36899999999999999999999999999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=99.97  E-value=1.4e-29  Score=191.64  Aligned_cols=147  Identities=18%  Similarity=0.374  Sum_probs=127.6

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC------------CCCCCcccEEEecCChhHHHHHH
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD------------LELNSKEFSVNLYPSQKLLNAAF   69 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~------------~~~~~~~~~~~~~p~~~~~~~ai   69 (149)
                      +++++|+++++||.|||||.++.++..|+++|+.++||+|++++.            ++....+|.+.++|+ ..++.|+
T Consensus        51 ~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~-~~~~~Ai  129 (400)
T cd06392          51 AVQEACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPP-VRLNDVM  129 (400)
T ss_pred             HHHHHHHHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCcCcCceeEEecCc-hHHHHHH
Confidence            678999999999999999999999999999999999999998542            222345788899998 5688999


Q ss_pred             HHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHHHhCC-------CceEEEecCc
Q psy18065         70 KDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREIRQKE-------IFNLIIDTST  139 (149)
Q Consensus        70 ~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i~~~~-------~~~iil~~~~  139 (149)
                      ++++.+|+|++|++||++|+|+.+++.+.+.+...+..+.++.++.   .++.+.++.++++.       .++|||+|++
T Consensus       130 ~dlV~~~~W~~v~~iYD~d~gl~~lq~L~~~~~~~~~~I~~~~v~~~~~~~~~~~l~~~~~~~L~~~~~~~r~iVv~~s~  209 (400)
T cd06392         130 LKLVTELRWQKFIVFYDSEYDIRGLQSFLDQASRLGLDVSLQKVDRNISRVFTNLFTTMKTEELNRYRDTLRRAILLLSP  209 (400)
T ss_pred             HHHHHhCCCcEEEEEEECcccHHHHHHHHHHHhhcCceEEEEEcccCcchhhhhHHHHHHHhhhhhccccceEEEEEcCc
Confidence            9999999999999999889999999999999888888888877643   24777777777665       6899999999


Q ss_pred             hhHHHHHhhC
Q psy18065        140 THISQFFRAV  149 (149)
Q Consensus       140 ~~~~~il~qA  149 (149)
                      +.+..+|+||
T Consensus       210 ~~~~~il~qA  219 (400)
T cd06392         210 RGAQTFINEA  219 (400)
T ss_pred             HHHHHHHHHH
Confidence            9999999987

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

Probab=99.96  E-value=8.1e-29  Score=186.48  Aligned_cols=146  Identities=18%  Similarity=0.328  Sum_probs=121.9

Q ss_pred             hHHHHHHHhhCCc--EEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-CCCCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          2 AEATMCRQLQNGV--QALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         2 ~~~~~c~~~~~~v--~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      +.+++|+++++|+  .|||||.++..+..|+++|+.++||+|++++.. ...++||++|+.|++..+.+|+++++++|+|
T Consensus        54 ~~~~~C~~~~~gv~~~AIiGp~ss~~a~~V~si~~~~~IP~Is~s~~~~~~~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W  133 (368)
T cd06383          54 ALIEVCDKADSAIVPHLVLDTTTCGDASEIKSVTGALGIPTFSASYGQEGDLEQPYLIQLMPPADDIVEAIRDIVSYYNI  133 (368)
T ss_pred             HHHHHHHHHHccCCcEEEECCCcchhHHHHHHHHhccCCCEEEccCCCcCcccCceEEEEeCChHHHHHHHHHHHHHCCC
Confidence            4677999999888  899999999999999999999999999987643 2347799999999999999999999999999


Q ss_pred             cEEEEEeecCcchh-hHHHHHhC-CCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCc-hhHHHHHhhC
Q psy18065         79 TKVAIVYEEDNGLF-KLQELVKT-PPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTST-THISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~~~~~~-~l~~l~~~-~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~-~~~~~il~qA  149 (149)
                      +||++||++++|.. .++.+++. ....++++.  .....+++++|++|++++.++||++|+. +.+..+|+||
T Consensus       134 ~~v~iIYddd~gl~~~l~~~l~~~~~~~~~~v~--~~~~~~~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA  205 (368)
T cd06383         134 TNAAILYDDDFVMDHKYKSLLQNWPTRHVITII--NSIIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQA  205 (368)
T ss_pred             cEEEEEEEcCchhhHHHHHHHHhHHhcCCEEEE--eccchhHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Confidence            99999999887763 55655554 333444543  2223579999999999998899999986 9999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

Probab=99.96  E-value=1.2e-28  Score=185.86  Aligned_cols=144  Identities=24%  Similarity=0.478  Sum_probs=128.5

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+++|+++++||.|||||.++..+.+++++|+.++||+|+++++. ...+.|.+++.|+   +..++++++++|+|++|
T Consensus        46 ~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~-~~~~~f~~~~~p~---~~~ai~d~i~~~~wk~v  121 (370)
T cd06389          46 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT-DGTHPFVIQMRPD---LKGALLSLIEYYQWDKF  121 (370)
T ss_pred             HHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCC-CCCCceEEEecch---hhhHHHHHHHhcCCcEE
Confidence            5789999999999999999999999999999999999999987653 3466889999998   78999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEE---EecC----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYI---RHAN----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~---~~~~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++|++++|...++.+.+.++..|+.+..   +++.    ..|++.+|++||++++++||++|+.+.+..+++||
T Consensus       122 ailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~~~~~~il~qa  196 (370)
T cd06389         122 AYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCERDKVNDIVDQV  196 (370)
T ss_pred             EEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHH
Confidence            99999889999999999998888866543   2322    14899999999999999999999999999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

Probab=99.96  E-value=8.5e-29  Score=186.60  Aligned_cols=144  Identities=21%  Similarity=0.432  Sum_probs=127.7

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+++|+++++||.|||||.++..+.+++++|+.++||+|+++++. ...+.|.+++.|+   +..++++++++|||++|
T Consensus        52 ~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~-~~~~~f~i~~~p~---~~~a~~~~i~~~~wk~v  127 (371)
T cd06388          52 VTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPT-EGESQFVLQLRPS---LRGALLSLLDHYEWNRF  127 (371)
T ss_pred             HHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccc-cCCCceEEEeChh---hhhHHHHHHHhcCceEE
Confidence            5788999999999999999999999999999999999999987653 3455778888888   67899999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEE---ecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIR---HANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~---~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++|+++++..+++.+.+.++..|+.+...   +.+..|++.+|++|+++++++||++|+.+.+..|++||
T Consensus       128 aiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa  198 (371)
T cd06388         128 VFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQI  198 (371)
T ss_pred             EEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHH
Confidence            999988888899999999988888776543   33345899999999999999999999999999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=99.95  E-value=5.2e-27  Score=177.64  Aligned_cols=148  Identities=36%  Similarity=0.647  Sum_probs=130.6

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      +++.+|+++.+||.|||||.+|..+.+++++|+.++||+|+++++ +. .+...|++|+.|++..+..++++++++|+|+
T Consensus        61 ~~~~~~~~l~~~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~~~~~~~~~~~~~~~~~a~~~~~~~~~wk  140 (384)
T cd06393          61 ATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQYLKWR  140 (384)
T ss_pred             HHHHhhcccccCcEEEECCCChHHHHHHHHHHhccCCCeEeccCCCcccCccceeEEEeccCHHHHHHHHHHHHHHcCCc
Confidence            467889988889999999999999999999999999999998753 22 2344678999999988999999999999999


Q ss_pred             EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|++||++++|...++++.+..++.|+++..++++.  .|++.+|++||+.++++||++|+.+.+..+++||
T Consensus       141 ~vaily~~~~g~~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa  212 (384)
T cd06393         141 SATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSHQMAAQILKQA  212 (384)
T ss_pred             EEEEEEeCchhHHHHHHHHHhhhccCceEEEEECCCCchHHHHHHHHHhhcCceEEEEECCHHHHHHHHHHH
Confidence            999999987788888899888888899988766653  5899999999999999999999999999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=99.95  E-value=1.4e-26  Score=175.04  Aligned_cols=145  Identities=23%  Similarity=0.480  Sum_probs=125.5

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      +++.+|+++++||.|||||.+|..+.+++++|+.++||+|+++++..  ...++|+||+.|+   +..++++++++|||+
T Consensus        51 ~~~~~c~ll~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~~fr~~p~---~~~a~~~~~~~~~wk  127 (382)
T cd06380          51 LTNAICSQLSRGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQFVLQMRPS---LIQALVDLIEHYGWR  127 (382)
T ss_pred             HHHHHHHHHhcCcEEEEecCcHHHHHHHHHHHhcCCCCeEecCCCcccCCCCCcEEEEeccc---hhHHHHHHHHhcCCe
Confidence            67889999999999999999999999999999999999999986432  3567899999997   356899999999999


Q ss_pred             EEEEEeecCcchhhHHHHHhCCCCCC--ceEEEEecCC----CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEEDNGLFKLQELVKTPPTLK--TEMYIRHANP----STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~~~~~~~l~~l~~~~~~~~--~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|+++|+++++...++.+.+.+++.|  +.+..+++..    .|++.+|++||++++++||++|+.+.+..+++||
T Consensus       128 ~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~i~~qa  203 (382)
T cd06380         128 KVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDNVTDEEEFLRLLEDLDRRKEKRIVLDCESERLNKILEQI  203 (382)
T ss_pred             EEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecCCCcHHHHHHHHHHhhcccceEEEEECCHHHHHHHHHHH
Confidence            99999998778888999888877777  5555544432    3799999999999999999999999999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family

Probab=99.94  E-value=2.6e-25  Score=166.70  Aligned_cols=148  Identities=12%  Similarity=0.182  Sum_probs=124.3

Q ss_pred             hHHHHHHH-hhCCcEEEEcC-CCCCcHHHHHHhhcccCCCceeecc-C-CC-C-CCcccEEEecCChhHHHHHHHHHHHh
Q psy18065          2 AEATMCRQ-LQNGVQALFGP-SDALLGPHVQSICEALDVPHMESRL-D-LE-L-NSKEFSVNLYPSQKLLNAAFKDVIRF   75 (149)
Q Consensus         2 ~~~~~c~~-~~~~v~aiiGp-~~s~~~~~v~~~~~~~~iP~is~~~-~-~~-~-~~~~~~~~~~p~~~~~~~ai~~ll~~   75 (149)
                      +++++|++ +++||.||||| .++.++.++.++|+.++||+|+++. + +. + +...+.++++|+...++.++++++++
T Consensus        69 ~~~~vC~~ll~~GV~AIfg~p~s~~~~~~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~  148 (382)
T cd06377          69 LLRSVCQTVVVQGVSALLAFPQTRPELVQLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQR  148 (382)
T ss_pred             HHHHHHHhHhhCCeEEEEecCCCHHHHHHHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHH
Confidence            57889999 59999999994 8778889999999999999999953 3 21 1 22233456699999999999999999


Q ss_pred             cCCcEEEEEeecCcchhhHHHHHhCCCCCC--ceEEEEecC----C-Cch-HHHHHHHHhCC-CceEEEecCchhHHHHH
Q psy18065         76 LNWTKVAIVYEEDNGLFKLQELVKTPPTLK--TEMYIRHAN----P-STY-RNVLREIRQKE-IFNLIIDTSTTHISQFF  146 (149)
Q Consensus        76 ~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~--~~v~~~~~~----~-~d~-~~~l~~i~~~~-~~~iil~~~~~~~~~il  146 (149)
                      |||++|++||+.++|..+++++.+.....+  ..+.+++.+    + .++ +.+|++|+++. .++|+++|+.+.+..+|
T Consensus       149 ~~W~~f~~iy~~~~gl~~lq~l~~~~~~~~~~~~i~v~~~~~~~~d~~~~~~~~L~~i~~~~~~~~ill~cs~e~~~~il  228 (382)
T cd06377         149 NGWEDVSLVLCRERDPTGLLLLWTNHARFHLGSVLNLSRNDPSTADLLDFLRAQLELLKDPPGPAVVLFGCDVARARRVL  228 (382)
T ss_pred             CCCcEEEEEEecCcCHHHHHHHHHHhcccccCceEEEEeccCccCChhHHHHHHHHHhhcccCceEEEEECCHHHHHHHH
Confidence            999999999999999999999998765544  456666664    2 456 99999999999 99999999999999999


Q ss_pred             hhC
Q psy18065        147 RAV  149 (149)
Q Consensus       147 ~qA  149 (149)
                      +||
T Consensus       229 ~~~  231 (382)
T cd06377         229 ELT  231 (382)
T ss_pred             Hhh
Confidence            986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=99.93  E-value=3.1e-25  Score=168.66  Aligned_cols=147  Identities=18%  Similarity=0.372  Sum_probs=120.3

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceee----cc----C--C--CCCCcccEEEecCChhHHHHHH
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMES----RL----D--L--ELNSKEFSVNLYPSQKLLNAAF   69 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~----~~----~--~--~~~~~~~~~~~~p~~~~~~~ai   69 (149)
                      +++++|+++++||.|||||.++..+..++++|+.++||+|++    +.    +  +  +.+..+|.++++|+ ..+..++
T Consensus        51 a~~~~c~l~~~gv~ai~Gp~~~~~~~~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~rp~-~~~~~ai  129 (400)
T cd06391          51 AVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVRPP-VYLNDVI  129 (400)
T ss_pred             HHHHHHHHHhCCeEEEECCCcchHHHHHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEecCh-HHHHHHH
Confidence            578899999999999999999999999999999999999984    11    1  1  12234566666676 5789999


Q ss_pred             HHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCC-------chHH-HHHHHHh--CCCceEEEecCc
Q psy18065         70 KDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS-------TYRN-VLREIRQ--KEIFNLIIDTST  139 (149)
Q Consensus        70 ~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~-------d~~~-~l~~i~~--~~~~~iil~~~~  139 (149)
                      ++++++|+|++++++|++++|..+++.+.+.+++.++|+..+++...       .++. .+++|++  ++.++||++|+.
T Consensus       130 ~~li~~f~W~~v~i~~d~~~~~~~l~~l~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rviVl~~~~  209 (400)
T cd06391         130 LRVVTEYAWQKFIIFYDTDYDIRGIQEFLDKVSQQGMDVALQKVENNINKMITGLFRTMRIEELNRYRDTLRRAILVMNP  209 (400)
T ss_pred             HHHHHHcCCcEEEEEEeCCccHHHHHHHHHHHHHcCCeEEEEecCcchhhhhHHHHHHHHHHHHHhhcccccEEEEECCc
Confidence            99999999999999999999999999999998889999988665321       1222 4566766  667999999999


Q ss_pred             hhHHHHHhhC
Q psy18065        140 THISQFFRAV  149 (149)
Q Consensus       140 ~~~~~il~qA  149 (149)
                      +.+..+|+||
T Consensus       210 ~~~~~ll~~a  219 (400)
T cd06391         210 ATAKSFITEV  219 (400)
T ss_pred             HHHHHHHHHH
Confidence            9999999986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=99.93  E-value=1e-25  Score=174.02  Aligned_cols=140  Identities=16%  Similarity=0.276  Sum_probs=121.6

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      .+.+|.|||||.+|..+.+++++++.++||+|++++. +  + ...++|+||+.|++..+++++++++++|||+||+++|
T Consensus       102 ~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~  181 (458)
T cd06375         102 SPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVA  181 (458)
T ss_pred             CCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEE
Confidence            4568999999999999999999999999999999753 2  2 2456899999999999999999999999999999999


Q ss_pred             ec-CcchhhHHHHHhCCCCCCceEEEE-ecC--C--CchHHHHHHHHh-CCCceEEEecCchhHHHHHhhC
Q psy18065         86 EE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--P--STYRNVLREIRQ-KEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        86 ~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~--~d~~~~l~~i~~-~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++ ++|...++.+.+.+++.|+|+... .++  .  .|+..++++|++ +++++||+++..+.+..+++||
T Consensus       182 ~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~~~~~~~~ll~~a  252 (458)
T cd06375         182 SEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFTRSEDARELLAAA  252 (458)
T ss_pred             eCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEecChHHHHHHHHHH
Confidence            87 689999999999888889998653 343  1  478999999875 6889999999999999999885

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

Probab=99.93  E-value=1.5e-24  Score=160.07  Aligned_cols=148  Identities=32%  Similarity=0.607  Sum_probs=127.0

Q ss_pred             hHHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC----CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          2 AEATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE----LNSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         2 ~~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~----~~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      +.+.+|+++ .++|.+|+||.++..+.+++++|+.++||+|++++...    ...++|++|+.|++..++.++++++++|
T Consensus        51 ~~~~~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~  130 (328)
T cd06351          51 LLRAVCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYY  130 (328)
T ss_pred             HHHHHHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcccccccccccceEEecCCHHHHHHHHHHHHHHc
Confidence            467899999 78999999999999999999999999999999975422    1356899999999999999999999999


Q ss_pred             CCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEecCc-hhHHHHHhhC
Q psy18065         77 NWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDTST-THISQFFRAV  149 (149)
Q Consensus        77 ~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~~~-~~~~~il~qA  149 (149)
                      +|++++++|+++.+...++.+.+.....+..+..+.++.  .+++++++++++.++++||++|.. +.+..+++||
T Consensus       131 ~w~~v~iiy~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~vil~~~~~~~~~~~l~~a  206 (328)
T cd06351         131 NWTKFAIIYDSDEGLSRLQELLDESGIKGIQVTVRRLDLDDDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQA  206 (328)
T ss_pred             CCcEEEEEEeCchHHHHHHHHHHhhcccCceEEEEEecCCchhHHHHHHHHhhcccceEEEECCcHHHHHHHHHHH
Confidence            999999999998888888888887665566666666654  359999999999998778888877 8889999885

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=99.93  E-value=3.7e-25  Score=168.54  Aligned_cols=138  Identities=13%  Similarity=0.172  Sum_probs=119.2

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      ++|.|||||.+|+.+.+++++++.++||+|++++. +  + ..+++|+||+.|++..+++++++++++|||+||++|+++
T Consensus       102 ~~V~aVIG~~~S~~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~  181 (403)
T cd06361         102 PRIKAVIGAGYSEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITD  181 (403)
T ss_pred             CCeEEEECCCcchHHHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEec
Confidence            47999999999999999999999999999999853 2  2 246689999999999999999999999999999999987


Q ss_pred             -CcchhhHHHHHhCCCCCCceEEEEe-cCC---------CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         88 -DNGLFKLQELVKTPPTLKTEMYIRH-ANP---------STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        88 -~~~~~~l~~l~~~~~~~~~~v~~~~-~~~---------~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                       ++|....+.+.+.+++.|+|+.... ++.         .++..+++.++.+++++||+.+..+.+..+++||
T Consensus       182 d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a  254 (403)
T cd06361         182 DDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKA  254 (403)
T ss_pred             CchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHH
Confidence             6899999999999988999987543 332         2345666678999999999999999999999985

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=99.93  E-value=1.2e-25  Score=174.09  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=120.4

Q ss_pred             HHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcE
Q psy18065          5 TMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTK   80 (149)
Q Consensus         5 ~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~   80 (149)
                      ..|.. .++++|+|||.+|..+.+++++++.++||+|++++. +  + ...++|+||+.|++..++.++++++++|||+|
T Consensus        96 ~~C~~-~~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~  174 (469)
T cd06365          96 YSCRR-QRKSVAVIGGPSWALSATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTW  174 (469)
T ss_pred             ccCCC-CCceEEEEcCCccHHHHHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeE
Confidence            34553 356999999999999999999999999999999753 2  2 24568999999999999999999999999999


Q ss_pred             EEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cCC------CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         81 VAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-ANP------STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        81 v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~~------~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      |++||.+ ++|...++.+.+.+++.|+|+...+ ++.      .++..++++|+++++++||++++.+.+..++.+
T Consensus       175 Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~~~~~~~~l~~~  250 (469)
T cd06365         175 VGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYGDTDSLLEVSFR  250 (469)
T ss_pred             EEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEcCcHHHHHHHHH
Confidence            9998876 6899999999999888999987643 431      267889999999999999999998777665443

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

Probab=99.93  E-value=1.5e-24  Score=160.38  Aligned_cols=148  Identities=32%  Similarity=0.675  Sum_probs=126.6

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+.+|++++++|.+||||.+|..+.+++++++.++||+|++++.......++.+++.|++..++.++++++++|+|+++
T Consensus        51 a~~~a~~li~~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~v  130 (324)
T cd06368          51 LTNKACDLLSQGVAAIFGPSSSSSANTVQSICDALEIPHITTSWSPNPKPRQFTINLYPSMRDLSDALLDLIKYFGWRKF  130 (324)
T ss_pred             HHHHHHHHHhcCcEEEECCCCHHHHHHHHHHHhccCCCcEEecCCcCCCCCcceEEecCCHHHHHHHHHHHHHhcCCCEE
Confidence            46778999988999999999999999999999999999999875432111345567778888899999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++|+++.+...++.+.+...+.|+++....+.+  .|++++|.+|++.++++||+.|..+.+..+++||
T Consensus       131 aii~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~d~Vi~~~~~~~~~~i~~qa  200 (324)
T cd06368         131 VYIYDSDEGLLRLQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDCSPERLKEFLEQA  200 (324)
T ss_pred             EEEECCcHhHHHHHHHHHhhccCCceEEEEEecCCchHHHHHHHHHhhccCceEEEECCHHHHHHHHHHH
Confidence            9999988788888888888777788887655543  3699999999999999999999999999999985

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

Probab=99.93  E-value=1.4e-24  Score=163.22  Aligned_cols=147  Identities=17%  Similarity=0.321  Sum_probs=119.9

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC------------CCCcccEEEecCChhHHHHHH
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE------------LNSKEFSVNLYPSQKLLNAAF   69 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~------------~~~~~~~~~~~p~~~~~~~ai   69 (149)
                      +++.+|+++++||.|||||.++..+.+++++|+.++||+|++.+...            ....+|.|+++|++ .+..++
T Consensus        51 a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~-~~~~ai  129 (363)
T cd06381          51 AVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPV-RLNDVM  129 (363)
T ss_pred             HHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccH-HHHHHH
Confidence            67889999998999999999999999999999999999999764210            12346778888985 689999


Q ss_pred             HHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHHH-------hCCCceEEEecCc
Q psy18065         70 KDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREIR-------QKEIFNLIIDTST  139 (149)
Q Consensus        70 ~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i~-------~~~~~~iil~~~~  139 (149)
                      ++++++|||++|+++|++++|..+++.+.+.++..|+.+.+...+.   ..+..+++.++       +...++||++|++
T Consensus       130 ~~lv~~~~wkkvavly~~d~g~~~l~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~vIl~~~~  209 (363)
T cd06381         130 LRLVTEWRWQKFVYFYDNDYDIRGLQEFLDQLSRQGIDVLLQKVDLNISKMATALFTTMRCEELNRYRDTLRRALLLLSP  209 (363)
T ss_pred             HHHHHhCCCeEEEEEEECCchHHHHHHHHHHHHhcCceEEEEecccccchhhhhhhhHHHHHHHHhhcccceEEEEEcCc
Confidence            9999999999999999998899999999988877787666555432   13445555443       5566799999999


Q ss_pred             hhHHHHHhhC
Q psy18065        140 THISQFFRAV  149 (149)
Q Consensus       140 ~~~~~il~qA  149 (149)
                      +.+..+++||
T Consensus       210 ~~~~~~l~~a  219 (363)
T cd06381         210 NGAYTFIDAS  219 (363)
T ss_pred             HHHHHHHHHH
Confidence            9999999986

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=99.93  E-value=9e-25  Score=165.62  Aligned_cols=137  Identities=15%  Similarity=0.237  Sum_probs=116.3

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCC--C--CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLE--L--NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~--~--~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      ++|.|||||.|+..+.+++++++.++||+|+++. ++.  +  ..++|++|+.|++..++.++++++++|+|++|++||+
T Consensus        66 ~~v~aiiGp~~s~~~~~va~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~  145 (387)
T cd06386          66 RKPDLILGPVCEYAAAPVARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYE  145 (387)
T ss_pred             hCCCEEECCCCccHHHHHHHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEE
Confidence            4899999999999999999999999999999874 222  2  2467799999999999999999999999999999998


Q ss_pred             cC-cchh---hHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         87 ED-NGLF---KLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        87 ~~-~~~~---~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++ ++..   .++.+.+.++..|+++...+..   ..|+.++|+++++++ ++||++++.+.++.+++||
T Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A  214 (387)
T cd06386         146 DDKQERNCYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAA  214 (387)
T ss_pred             cCCCCccceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHH
Confidence            74 5433   4778888888888888765543   258999999999998 8888888889999999986

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=99.93  E-value=2.7e-24  Score=159.45  Aligned_cols=148  Identities=34%  Similarity=0.665  Sum_probs=124.3

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC-CCCcccEEEecCChhHHHHHHHHHHHhcCCcE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTK   80 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~   80 (149)
                      +.+.+|++++++|.+||||.+|..+.+++++++.++||+|++++... ....+|+||+.|++..++.++++++++++|++
T Consensus        52 a~~~~~~li~~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~~~~~~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~  131 (327)
T cd06382          52 TTKKVCDLLQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQTRWDPEPKSNRQFTINLYPSNADLSRAYADIVKSFNWKS  131 (327)
T ss_pred             HHHHhhhhhhcCcEEEECCCChhHHHHHHHHHhccCCCceeccCCcCccccccceEEeCCCHHHHHHHHHHHHHhcCCcE
Confidence            56788999988999999999999999999999999999999875322 12456789999999999999999999999999


Q ss_pred             EEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC-CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         81 VAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        81 v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++++|+++.+...++++.+.....|..+....+++ .|++++|.+|+++++++|++.|....+..+++||
T Consensus       132 vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~qa  201 (327)
T cd06382         132 FTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRIIIDCSADILIELLKQA  201 (327)
T ss_pred             EEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcCceEEEEECCHHHHHHHHHHH
Confidence            99999987666667776665444444555555543 3899999999999999999999999999999985

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=99.93  E-value=1.5e-24  Score=162.87  Aligned_cols=148  Identities=11%  Similarity=0.110  Sum_probs=124.3

Q ss_pred             hHHHHHHHhh-CCcEEEEcCCCCCc---HHHHHHhhcccCCCceeeccC---C-C-CCCcccEEEecCChhHHHHHHHHH
Q psy18065          2 AEATMCRQLQ-NGVQALFGPSDALL---GPHVQSICEALDVPHMESRLD---L-E-LNSKEFSVNLYPSQKLLNAAFKDV   72 (149)
Q Consensus         2 ~~~~~c~~~~-~~v~aiiGp~~s~~---~~~v~~~~~~~~iP~is~~~~---~-~-~~~~~~~~~~~p~~~~~~~ai~~l   72 (149)
                      +.+..|+++. ++|.+|+||.+|..   +.+++++++.++||+|++++.   . + ...++|+||+.|++..++.+++++
T Consensus        51 ~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~l  130 (362)
T cd06367          51 LLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEI  130 (362)
T ss_pred             HHHHHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHHHHH
Confidence            3567899885 57999999999998   999999999999999998742   2 2 246788999999999999999999


Q ss_pred             HHhcCCcEEEEEeec-CcchhhHHHHHhCCCCCCce--EEE-EecC--CC-chHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065         73 IRFLNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTE--MYI-RHAN--PS-TYRNVLREIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        73 l~~~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~--v~~-~~~~--~~-d~~~~l~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      +++|||++|++||++ ++|...++.+.+.+++.|+|  +.. ..++  .. ++..++.++++.++++||++|+.+.+..+
T Consensus       131 l~~~~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i  210 (362)
T cd06367         131 LEEYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKKLESRVILLYCSKEEAERI  210 (362)
T ss_pred             HHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHhcCCcEEEEeCCHHHHHHH
Confidence            999999999999997 57777777777777777877  432 2222  23 78999999999999999999999999999


Q ss_pred             HhhC
Q psy18065        146 FRAV  149 (149)
Q Consensus       146 l~qA  149 (149)
                      ++||
T Consensus       211 l~~a  214 (362)
T cd06367         211 FEAA  214 (362)
T ss_pred             HHHH
Confidence            9885

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family

Probab=99.92  E-value=7.7e-24  Score=159.19  Aligned_cols=148  Identities=13%  Similarity=0.138  Sum_probs=113.0

Q ss_pred             hHHHHHHHhhC-CcEEEE-cCCCCC--cHHHHHHhhcccCCCceeecc----CCC-CCCcccEEEecCChhHHHHHHHHH
Q psy18065          2 AEATMCRQLQN-GVQALF-GPSDAL--LGPHVQSICEALDVPHMESRL----DLE-LNSKEFSVNLYPSQKLLNAAFKDV   72 (149)
Q Consensus         2 ~~~~~c~~~~~-~v~aii-Gp~~s~--~~~~v~~~~~~~~iP~is~~~----~~~-~~~~~~~~~~~p~~~~~~~ai~~l   72 (149)
                      +.+.+|+++.+ +|.|+| ||.++.  .+..++.+++.++||+|+++.    ..+ .+.++|++|+.|++..++++++++
T Consensus        50 ~~~~vC~ll~~~~V~aiIfgp~~~~~~~a~~~s~~~~~~~vP~is~~~~s~~~ls~~~~~p~flr~~Psd~~q~~Ai~~I  129 (362)
T cd06378          50 ILTQLCDLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHGGSSMIMAAKDSGSTFLQFGPSIEQQAAVMLKI  129 (362)
T ss_pred             HHHHHHHHhcccceEEEEecCCCCccccchhhhhhhhceeccEEEecccccccccCCCCCceEEEeCCCHHHHHHHHHHH
Confidence            46789999976 599755 999987  446777788889999999862    112 356789999999999999999999


Q ss_pred             HHhcCCcEEEEEeecCcchh-hHHHHHhCCCCCCceEEEE-----ecCC-CchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065         73 IRFLNWTKVAIVYEEDNGLF-KLQELVKTPPTLKTEMYIR-----HANP-STYRNVLREIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        73 l~~~~W~~v~vi~~~~~~~~-~l~~l~~~~~~~~~~v~~~-----~~~~-~d~~~~l~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      +++|+|++|++||+.+.|.. .++.+.+.....++|..+.     .... .+...+++.+++.++++||++|+.+.+..+
T Consensus       130 i~~f~W~~v~iV~~~~~g~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~lk~~~arViVl~~s~~~a~~i  209 (362)
T cd06378         130 MEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDMSDDDGDARTQRQLKKLESQVILLYCSKEEAEYI  209 (362)
T ss_pred             HHHCCCeEEEEEEEcCCCHHHHHHHHHHHHhhcccceeEEEEEeeccCCCcchHHHHHHHHhcCCCEEEEECCHHHHHHH
Confidence            99999999999999865443 3333333332333454332     1112 247889999999999999999999999999


Q ss_pred             HhhC
Q psy18065        146 FRAV  149 (149)
Q Consensus       146 l~qA  149 (149)
                      |+||
T Consensus       210 f~~A  213 (362)
T cd06378         210 FRAA  213 (362)
T ss_pred             HHHH
Confidence            9986

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=99.92  E-value=1.6e-24  Score=169.18  Aligned_cols=139  Identities=12%  Similarity=0.214  Sum_probs=121.3

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      ..++.|||||.+|..+.+++++++.++||+|++++. +  + ...++|+||+.|++..++.++++++++|||+||++|++
T Consensus       116 ~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~  195 (510)
T cd06364         116 IPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAA  195 (510)
T ss_pred             CCceEEEECCCchhHHHHHHHHhccccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            346889999999999999999999999999998753 2  2 24568899999999999999999999999999999987


Q ss_pred             c-CcchhhHHHHHhCCCCCCceEEEEe-cC----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         87 E-DNGLFKLQELVKTPPTLKTEMYIRH-AN----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        87 ~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      + ++|...++.+.+.+++.|+|+...+ ++    ..|+.+++++|+++++++||+++....+..+++||
T Consensus       196 dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~~~~~~~ll~qa  264 (510)
T cd06364         196 DDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSSGPDLEPLIKEI  264 (510)
T ss_pred             cCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeCcHHHHHHHHHH
Confidence            6 6899999999998888999987533 22    25789999999999999999999999999999885

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=99.92  E-value=1.5e-24  Score=167.71  Aligned_cols=140  Identities=14%  Similarity=0.267  Sum_probs=118.5

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      .+++|.|||||.+|..+.+++++++.++||+|++++. +  ++ ..++|+||+.|++..++.++++++++|||++|++||
T Consensus       100 ~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~ffR~~p~d~~~~~ai~~~i~~~~w~~Vaii~  179 (463)
T cd06376         100 KPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLA  179 (463)
T ss_pred             CCCCeEEEECCCCchHHHHHHHHhccccCcccccccCChhhcccccCCceEEccCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            3468999999999999999999999999999998643 2  22 356889999999999999999999999999999999


Q ss_pred             ec-CcchhhHHHHHhCCCCC-CceEEEE-ec--CC--CchHHHHHHHHh-CCCceEEEecCchhHHHHHhhC
Q psy18065         86 EE-DNGLFKLQELVKTPPTL-KTEMYIR-HA--NP--STYRNVLREIRQ-KEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        86 ~~-~~~~~~l~~l~~~~~~~-~~~v~~~-~~--~~--~d~~~~l~~i~~-~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++ ++|...++.+.+.+++. ++|+... .+  ..  .|+.+++++||+ +++++||+++..+.+..+++||
T Consensus       180 ~~~~yg~~~~~~~~~~~~~~g~~~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~vIvl~~~~~~~~~ll~~a  251 (463)
T cd06376         180 SEGNYGESGVEAFTQISREAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNARAVIIFANEDDIRRVLEAA  251 (463)
T ss_pred             eCChHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCHHHHHHHHHHHhccCCCeEEEEecChHHHHHHHHHH
Confidence            75 78988899988877665 5777542 22  22  589999999987 6999999999999999999875

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=99.91  E-value=2.7e-23  Score=156.97  Aligned_cols=148  Identities=12%  Similarity=0.178  Sum_probs=120.6

Q ss_pred             hHHHHHH-HhhCCcEEEEc-CC-CCC---cHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHH
Q psy18065          2 AEATMCR-QLQNGVQALFG-PS-DAL---LGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKD   71 (149)
Q Consensus         2 ~~~~~c~-~~~~~v~aiiG-p~-~s~---~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~   71 (149)
                      ++..+|+ +++++|.||+| +. ++.   .+.+++.+++.++||+|++++. +  ++ ..++|+||+.|++..++.++++
T Consensus        68 ~a~~~~~~Li~~~V~aii~~~~~ss~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~  147 (377)
T cd06379          68 TALSVCEQLISNQVYAVIVSHPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLE  147 (377)
T ss_pred             HHHHHHHHHhhcceEEEEEeCCCCCcccccHHHHHHHhhCCCCcEEecccCCccccCccccccEEEecCCHHHHHHHHHH
Confidence            3556896 46789999974 33 332   4778899999999999998753 2  22 3468899999999999999999


Q ss_pred             HHHhcCCcEEEEEeec-CcchhhHHHHHhCCCCCCc----eEEE-EecCC--CchHHHHHHHHhCCCceEEEecCchhHH
Q psy18065         72 VIRFLNWTKVAIVYEE-DNGLFKLQELVKTPPTLKT----EMYI-RHANP--STYRNVLREIRQKEIFNLIIDTSTTHIS  143 (149)
Q Consensus        72 ll~~~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~----~v~~-~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~  143 (149)
                      ++++|+|++|+++|++ ++|...++.+.+.+++.|+    ++.. ..+++  .|+.+++++|++.++++||++|+.+.+.
T Consensus       148 ~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~~  227 (377)
T cd06379         148 MLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDAA  227 (377)
T ss_pred             HHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcCHHHHH
Confidence            9999999999999997 5787788888888777888    6553 33543  5899999999999999999999999999


Q ss_pred             HHHhhC
Q psy18065        144 QFFRAV  149 (149)
Q Consensus       144 ~il~qA  149 (149)
                      .+++||
T Consensus       228 ~l~~qa  233 (377)
T cd06379         228 VIYRNA  233 (377)
T ss_pred             HHHHHH
Confidence            999885

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=99.91  E-value=5.9e-24  Score=164.81  Aligned_cols=143  Identities=15%  Similarity=0.271  Sum_probs=119.0

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      |...+.+|.|||||.+|..+.+++++++.++||+|++++. +  ++ ..++|+||+.|++..++.++++++++|+|+||+
T Consensus       111 ~~~~~~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~fRt~p~d~~~~~al~~l~~~~~W~~Va  190 (472)
T cd06374         111 PNKSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVS  190 (472)
T ss_pred             cccCCCCeEEEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCceEEcCCChHHHHHHHHHHHHHCCCcEEE
Confidence            4444668999999999999999999999999999999753 2  22 367899999999999999999999999999999


Q ss_pred             EEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC----CCchHHHHHHHHhC--CCceEEEecCchhHHHHHhhC
Q psy18065         83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN----PSTYRNVLREIRQK--EIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~----~~d~~~~l~~i~~~--~~~~iil~~~~~~~~~il~qA  149 (149)
                      +||++ ++|....+.+.+.+++.|+|+... .+.    ..|+.+++++||++  .+++|++++....++.+++||
T Consensus       191 ii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a  265 (472)
T cd06374         191 AVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAM  265 (472)
T ss_pred             EEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHH
Confidence            99997 578888889988888889998753 332    25899999999975  445566667777788888774

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=99.91  E-value=1.2e-23  Score=162.27  Aligned_cols=140  Identities=14%  Similarity=0.229  Sum_probs=120.7

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      .+++|.|||||.+|..+.+++++++.++||+|++++. +  + ...++|+||+.|++..++.++++++++|+|++|++||
T Consensus       100 ~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~  179 (452)
T cd06362         100 SPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVA  179 (452)
T ss_pred             CCCCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEecCChHHHHHHHHHHHHHCCCcEEEEEE
Confidence            3468999999999999999999999999999998753 2  2 2467899999999999999999999999999999999


Q ss_pred             ec-CcchhhHHHHHhCCCCCCceEEEE-ecC----CCchHHHHHHHHh-CCCceEEEecCchhHHHHHhhC
Q psy18065         86 EE-DNGLFKLQELVKTPPTLKTEMYIR-HAN----PSTYRNVLREIRQ-KEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        86 ~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~----~~d~~~~l~~i~~-~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++ ++|....+.+.+.+++.|+|+... .++    ..|+.+++++|++ .++++||+++....+..+++||
T Consensus       180 ~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~~~~~~~~~~~a  250 (452)
T cd06362         180 SEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCREDDIRGLLAAA  250 (452)
T ss_pred             eCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcChHHHHHHHHHH
Confidence            97 578888899999888889998753 332    2489999999987 5788999999999999999885

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

Probab=99.90  E-value=1.2e-22  Score=151.39  Aligned_cols=148  Identities=16%  Similarity=0.208  Sum_probs=127.4

Q ss_pred             hHHHHHHHhh--------------CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC---CCCcccEEEecCChh
Q psy18065          2 AEATMCRQLQ--------------NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE---LNSKEFSVNLYPSQK   63 (149)
Q Consensus         2 ~~~~~c~~~~--------------~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~---~~~~~~~~~~~p~~~   63 (149)
                      +.+.+++++.              ++|.+++||.+|..+.+++.+++.+++|+|++++. +.   ...++|+||+.|++.
T Consensus        66 a~~~a~~li~~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p~~~  145 (348)
T cd06350          66 ALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDT  145 (348)
T ss_pred             HHHHHHHHHhcCCCCCCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecCCcH
Confidence            4566778876              48999999999999999999999999999998753 21   245689999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecCC----CchHHHHHHHHhCCCceEEEec
Q psy18065         64 LLNAAFKDVIRFLNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HANP----STYRNVLREIRQKEIFNLIIDT  137 (149)
Q Consensus        64 ~~~~ai~~ll~~~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~~----~d~~~~l~~i~~~~~~~iil~~  137 (149)
                      .++.+++++++++||++++++|++ ++|....+.+.+.+++.|+|+... .++.    .|+.+++++|+.+++++|++.+
T Consensus       146 ~~~~a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~  225 (348)
T cd06350         146 SQALAIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFG  225 (348)
T ss_pred             HHHHHHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence            999999999999999999999987 578888888888888889998653 3432    4799999999999999999999


Q ss_pred             CchhHHHHHhhC
Q psy18065        138 STTHISQFFRAV  149 (149)
Q Consensus       138 ~~~~~~~il~qA  149 (149)
                      ....+..+++||
T Consensus       226 ~~~~~~~~~~~a  237 (348)
T cd06350         226 DEDDALRLFCEA  237 (348)
T ss_pred             CcHHHHHHHHHH
Confidence            999999999875

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=99.90  E-value=2.1e-22  Score=152.91  Aligned_cols=143  Identities=18%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             HHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         6 ~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      .|.+.+++|.|||||.+|..+.+++++++.++||+|++++. +  +. ..++|+||+.|++..++.++++++++|+|+++
T Consensus        66 ~~~~~~~~v~aiiGp~~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v  145 (396)
T cd06373          66 VDLYFQHKPDAFLGPGCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRA  145 (396)
T ss_pred             HHHHhccCCeEEECCCccchhHHHHHHHhcCCCceECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEE
Confidence            34444678999999999999999999999999999998753 2  22 45678999999999999999999999999999


Q ss_pred             EEEeecC-cc----hhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEED-NG----LFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~-~~----~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++|+++ ++    ....+.+.+.+++.|+++....+.+    .|+.++|++|+++. ++||+.+....+..+++||
T Consensus       146 aii~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~~~~qa  221 (396)
T cd06373         146 ALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDFPFDEDKELDDYKELLRDISKKG-RVVIMCASPDTVREIMLAA  221 (396)
T ss_pred             EEEEECCCCCcchHHHHHHHHHHHHhhcCceeeEEeecCCccccCHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHH
Confidence            9999874 42    4467778777777788876545432    58999999999876 8888899988899999885

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

Probab=99.90  E-value=1.8e-22  Score=146.28  Aligned_cols=148  Identities=21%  Similarity=0.304  Sum_probs=121.2

Q ss_pred             hHHHHHHHh--hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC----CCCcccEEEecCChhHHHHHHHHHHHh
Q psy18065          2 AEATMCRQL--QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE----LNSKEFSVNLYPSQKLLNAAFKDVIRF   75 (149)
Q Consensus         2 ~~~~~c~~~--~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~----~~~~~~~~~~~p~~~~~~~ai~~ll~~   75 (149)
                      +++..|+.+  ..++.+|+||.++..+.+++++++.+++|+|++++...    ...+++++|+.|++..+..++++++++
T Consensus        58 ~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~  137 (298)
T cd06269          58 AALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKH  137 (298)
T ss_pred             HHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHH
Confidence            345678866  36899999999999999999999999999999886421    135689999999999999999999999


Q ss_pred             cCCcEEEEEeecC-cchhhHHHHHhCCCCCCceEEEEe-cCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         76 LNWTKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIRH-ANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        76 ~~W~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~~-~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |+|++++++|+++ ++....+.+.+..++.++|+.... ++.  .++.++++++++++.++||+++..+.+..+++||
T Consensus       138 ~~w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a  215 (298)
T cd06269         138 FGWTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIPDGSEDIRRLLKELKSSTARVIVVFSSEEDALRLLEEA  215 (298)
T ss_pred             CCCeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHH
Confidence            9999999999985 455555666666666788876533 333  4789999999999987777787878899999875

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=99.90  E-value=3e-23  Score=158.38  Aligned_cols=139  Identities=19%  Similarity=0.249  Sum_probs=120.8

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      +++|.|||||.+|..+.+++++++.+++|+|++++..   + ...++++||+.|++..++.++++++++|+|++|+++|+
T Consensus       105 ~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~~  184 (410)
T cd06363         105 QPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGS  184 (410)
T ss_pred             CCCeEEEECCCccHHHHHHHHHhcccccccccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEEe
Confidence            4689999999999999999999999999999987532   2 23557899999999999999999999999999999998


Q ss_pred             c-CcchhhHHHHHhCCCCCCceEEEEe-cC-----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         87 E-DNGLFKLQELVKTPPTLKTEMYIRH-AN-----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        87 ~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~-----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      + ++|...++.+.+.+++.|+++.... ++     ..|+.+++.+|+++++++||+++..+.+..+++||
T Consensus       185 ~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~il~qa  254 (410)
T cd06363         185 DDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEAFFNSV  254 (410)
T ss_pred             CChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHH
Confidence            7 5888888888888888898886533 32     25799999999999999999999999999999885

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=99.89  E-value=1.9e-22  Score=152.73  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=116.0

Q ss_pred             HHHHHHHh--hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--C-CCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          3 EATMCRQL--QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--L-NSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         3 ~~~~c~~~--~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~-~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      .+..|.+.  +++|.+||||.+|..+.+++++++.++||+|++++. +.  + ..+++++|+.|++   ..++++++++|
T Consensus        54 ~~a~~~~~~~~~~V~aviGp~~S~~~~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~  130 (382)
T cd06371          54 SRALAAFLGYEGYASAFVGPVNPGYCEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYF  130 (382)
T ss_pred             hHHHHHHHcccCCceEEECCCCchHHHHHHHHHHhcCceEEecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHC
Confidence            35668777  368999999999999999999999999999998753 22  2 3567889999985   56788999999


Q ss_pred             CCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCC-CceEEEecCc-----hhHHHHH
Q psy18065         77 NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKE-IFNLIIDTST-----THISQFF  146 (149)
Q Consensus        77 ~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~-~~~iil~~~~-----~~~~~il  146 (149)
                      +|++|++||++ +++....+.+.+.+++.|+++.. ..++  ..|+.++|++||+.+ +++||+.++.     ..+..++
T Consensus       131 ~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~  210 (382)
T cd06371         131 RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLL  210 (382)
T ss_pred             CCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHH
Confidence            99999999997 56777788888888888988765 3454  368999999999988 4666665554     5667888


Q ss_pred             hhC
Q psy18065        147 RAV  149 (149)
Q Consensus       147 ~qA  149 (149)
                      +||
T Consensus       211 ~qa  213 (382)
T cd06371         211 ETA  213 (382)
T ss_pred             HHH
Confidence            885

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=99.89  E-value=4e-22  Score=151.85  Aligned_cols=138  Identities=16%  Similarity=0.228  Sum_probs=113.9

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEE-Ee
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAI-VY   85 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~v-i~   85 (149)
                      .+++.+||||.||..+.+++++++.++||+|++++. +  + ...++|+||+.|++..++.++++++++|+|+++++ +|
T Consensus        72 ~~~v~aiiGp~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~  151 (405)
T cd06385          72 THNPWAFIGPGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIY  151 (405)
T ss_pred             hcCCcEEECCCccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEEE
Confidence            468999999999999999999999999999998753 2  2 24678899999999999999999999999999984 66


Q ss_pred             ecCc--c---hhhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         86 EEDN--G---LFKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        86 ~~~~--~---~~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++.  +   ....+.+.+.+++.|+++....+.   ..|+..+|++|++.+ ++||+.++.+.++.+++||
T Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-~iii~~~~~~~~~~i~~~a  222 (405)
T cd06385         152 SDNKVDDRPCYFAMEGLYMELKKNNITVVDLVFEEDDLINYTTLLQDIKQKG-RVIYVCCSPDIFRRLMLQF  222 (405)
T ss_pred             ecCcccccchHHHHHHHHHHHHhCCeEEEEeeccCCchhhHHHHHHHHhhcc-eEEEEeCCHHHHHHHHHHH
Confidence            6542  1   225677877778889998765554   257999999998876 7888888888999999885

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=99.88  E-value=8.4e-22  Score=147.24  Aligned_cols=148  Identities=21%  Similarity=0.329  Sum_probs=127.7

Q ss_pred             hHHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C---CCCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          2 AEATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L---ELNSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         2 ~~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~---~~~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      +.+.+|+++.+ +|.+||||.+|..+.+++++++.+++|+|++++. +   ....++|+||+.|++..+..+++++++++
T Consensus        54 a~~~a~~l~~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~  133 (350)
T cd06366          54 AASAALDLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKF  133 (350)
T ss_pred             HHHHHHHHhccCCceEEECCCcHHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHC
Confidence            45678999975 8999999999999999999999999999998753 2   12456899999999999999999999999


Q ss_pred             CCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cCC----CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         77 NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-ANP----STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        77 ~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~~----~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|++++++|++ ++|....+.+.+.+++.|+++.... ++.    .|+.+.+.+|+++++++|++.+....+..+++||
T Consensus       134 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a  212 (350)
T cd06366         134 GWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEA  212 (350)
T ss_pred             CCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHHHHHHHH
Confidence            99999999987 5688888888888888898886543 432    4899999999999999999999999999999885

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=99.88  E-value=6.2e-22  Score=146.92  Aligned_cols=146  Identities=20%  Similarity=0.304  Sum_probs=115.5

Q ss_pred             HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C--CCCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      ...|...++++.+||||.++..+.+++++++.++||+|++++. +  +  ...+++++|+.|++..++.++++++++|+|
T Consensus        42 ~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w  121 (348)
T PF01094_consen   42 AAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGW  121 (348)
T ss_dssp             HHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTS
T ss_pred             chhhhccCCCcEEEECCCcccccchhheeecccccceeeccccccccccchhhccccccccccHHHHHHHHHHhhhcCCC
Confidence            4567777789999999999999999999999999999999742 2  1  246788999999999999999999999999


Q ss_pred             cEEEEEeecC-cchhhHHHHHhCCCC-CCceEEE-Eec--CCCchHHHHHHHHh--CCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEED-NGLFKLQELVKTPPT-LKTEMYI-RHA--NPSTYRNVLREIRQ--KEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~~-~~~~~l~~l~~~~~~-~~~~v~~-~~~--~~~d~~~~l~~i~~--~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++|++||+++ +|....+.+.+.+++ .+.++.. ...  ...++.++++.+++  .+.++||++++...+..++++|
T Consensus       122 ~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~~~~~~~~~l~~a  199 (348)
T PF01094_consen  122 TRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVISSDSDAEELLKKLKEIKSGARVVILCSSPEDARQFLEAA  199 (348)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEESBHHHHHHHHHHH
T ss_pred             ceeeeeccccccccccchhhhhhhcccccceecccccccccccchhhhhhhhhhccccceeeeeecccccccccccch
Confidence            9999999986 445555666665554 3445544 222  23567777777777  8999999999999999998875

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=99.88  E-value=1.5e-21  Score=148.80  Aligned_cols=145  Identities=12%  Similarity=0.225  Sum_probs=115.3

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      +.+.+|++++++|.+||||.+|.  .+++.+++.++||+|++++..   . ...+++++|+.|++..++.++++++++|+
T Consensus        58 a~~~~~~li~~~v~aiiGp~~S~--~~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~  135 (404)
T cd06370          58 SIRAVSDWWKRGVVAFIGPECTC--TTEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFN  135 (404)
T ss_pred             HHHHHHHHHhcCceEEECCCchh--HHHHHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCC
Confidence            56788999988999999999974  456789999999999987542   1 23567789999999999999999999999


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecCC---------CchHHHHHHHHhCCCceEEEecCchhHHHHH
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HANP---------STYRNVLREIRQKEIFNLIIDTSTTHISQFF  146 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~~---------~d~~~~l~~i~~~~~~~iil~~~~~~~~~il  146 (149)
                      |+++++||++ ++|....+.+.+.+++.|+++... .++.         .++..++++++.. .+.+|+++....+..++
T Consensus       136 w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~~~~~l  214 (404)
T cd06370         136 WNKFSVVYENDSKYSSVFETLKEEAELRNITISHVEYYADFYPPDPIMDNPFEDIIQRTKET-TRIYVFIGEANELRQFL  214 (404)
T ss_pred             CcEEEEEEecCcccHHHHHHHHHHHHHcCCEEEEEEEECCCCCchhhhHHHHHHHHHhccCC-CEEEEEEcCHHHHHHHH
Confidence            9999999997 567666666777777789988643 3432         3677888888775 45666777777888899


Q ss_pred             hhC
Q psy18065        147 RAV  149 (149)
Q Consensus       147 ~qA  149 (149)
                      +||
T Consensus       215 ~qa  217 (404)
T cd06370         215 MSM  217 (404)
T ss_pred             HHH
Confidence            885

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=99.87  E-value=6.8e-21  Score=144.48  Aligned_cols=147  Identities=11%  Similarity=0.140  Sum_probs=111.5

Q ss_pred             hHHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          2 AEATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         2 ~~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      +....|+++. ++|.|||||.+|..+.+++++++.+++|+|++++. +  + ...+++++|+.|++..++.++++++++|
T Consensus        56 a~~~~~~l~~~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~  135 (391)
T cd06372          56 SLAGFIDQVQKEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHF  135 (391)
T ss_pred             HHHHHHHHHHhcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHC
Confidence            5677899885 58999999999999999999999999999998642 2  2 2356788999999999999999999999


Q ss_pred             CCcEEEEEeecC--cchh----hHHHHHhCCCCCCceEEEE-ecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHh
Q psy18065         77 NWTKVAIVYEED--NGLF----KLQELVKTPPTLKTEMYIR-HANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFR  147 (149)
Q Consensus        77 ~W~~v~vi~~~~--~~~~----~l~~l~~~~~~~~~~v~~~-~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~  147 (149)
                      ||++|+++|+++  .+..    ..+.+.+.++ .++++... .+..  .|+...+.+.+++++++||++++.+.+..+++
T Consensus       136 ~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~  214 (391)
T cd06372         136 GWKHIGLFGGSSRDSSWDEVDELWKAVENQLK-FHFNITATVRYSSSNPDLLQEKLRYISSVARVIILICSSEDAKAILQ  214 (391)
T ss_pred             CCeEEEEEEeccccchhhhHHHHHHHHHHHHh-hCEEEEEEEecCCCChHHHHHHHHhhhccceEEEEEcChHHHHHHHH
Confidence            999999999642  2222    1223333332 45665543 2332  35555555555688899999999999999999


Q ss_pred             hC
Q psy18065        148 AV  149 (149)
Q Consensus       148 qA  149 (149)
                      ||
T Consensus       215 ~a  216 (391)
T cd06372         215 AA  216 (391)
T ss_pred             HH
Confidence            86

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor

Probab=99.86  E-value=6.6e-21  Score=144.99  Aligned_cols=138  Identities=14%  Similarity=0.164  Sum_probs=110.7

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC--CCcccEEEecCChhHHHHHHHHHHHhcCCc-EEEEE
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL--NSKEFSVNLYPSQKLLNAAFKDVIRFLNWT-KVAIV   84 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~--~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~-~v~vi   84 (149)
                      .+++.+||||.+|..+.+++++++.++||+|++++. +  ++  ..++++||+.|++..++.++..++++|+|+ ++++|
T Consensus        71 ~~~v~aviGp~~S~~~~av~~i~~~~~iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaii  150 (399)
T cd06384          71 YSDPDVFFGPGCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALL  150 (399)
T ss_pred             hcCCCEEECCCCchHHHHHHHHHhhcCCcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            356889999999999999999999999999999863 2  22  355779999999999999988999999999 58899


Q ss_pred             eecC----cc-hhhHHHHHhCCCCCCceEEEEec-C--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         85 YEED----NG-LFKLQELVKTPPTLKTEMYIRHA-N--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        85 ~~~~----~~-~~~l~~l~~~~~~~~~~v~~~~~-~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |+++    .+ ....+.+.+.+++.|+++..+.. .  ..|+.++|+++|+ ++++|++.++.+.+..+++||
T Consensus       151 y~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa  222 (399)
T cd06384         151 YLDLKTDDRPHYFISEGVFLALQEENANVSAHPYHIEKNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQA  222 (399)
T ss_pred             EecCCccCCcceEehHHHHHHHHhcCceEEEEEEeccchhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHH
Confidence            8642    12 11345566666667888876543 2  3689999999997 788888888988899999885

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.

>KOG1056|consensus

Probab=99.85  E-value=5.6e-21  Score=153.11  Aligned_cols=138  Identities=16%  Similarity=0.248  Sum_probs=120.7

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      ..|.++|||..|+.+.+++.+...++||||+|++. +  + ..+++|+.|+.|+|..|++|+++++++|+|+||..++++
T Consensus       124 p~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~Qa~Am~~il~~f~W~yVstv~s~  203 (878)
T KOG1056|consen  124 PPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVFQAQAMVDILKKFNWNYVSTVASE  203 (878)
T ss_pred             CceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHHHHHHHHHHHHHhCeeEeeehhcC
Confidence            35999999999999999999999999999999853 2  3 357788999999999999999999999999999999986


Q ss_pred             -CcchhhHHHHHhCCCCCCceEEEEe-cC----CCchHHHHHHHHh-CCCceEEEecCchhHHHHHhhC
Q psy18065         88 -DNGLFKLQELVKTPPTLKTEMYIRH-AN----PSTYRNVLREIRQ-KEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        88 -~~~~~~l~~l~~~~~~~~~~v~~~~-~~----~~d~~~~l~~i~~-~~~~~iil~~~~~~~~~il~qA  149 (149)
                       |||..+++.+.+..+.+|+|+.... +.    ...+..+++++.. .+++++|+++..++++.+++.|
T Consensus       204 ~dYGE~Gieaf~~~a~~~~iCIa~s~ki~~~~~~~~~~~~l~kl~~~~~a~vvV~F~~~~~~r~~~~aa  272 (878)
T KOG1056|consen  204 GDYGESGIEAFKEEAAERGICIAFSEKIYQLSIEQEFDCVLRKLLETPNARVVVVFCRGEDARRLLKAA  272 (878)
T ss_pred             ccchhhhHHHHHHhHHhcCceEEehhhcccccchhHHHHHHHHHhhcCCCeEEEEecCcchHHHHHHHH
Confidence             8999999999999988899986532 22    2467888888776 8899999999999999999853

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=99.85  E-value=3.7e-20  Score=140.16  Aligned_cols=147  Identities=18%  Similarity=0.307  Sum_probs=122.1

Q ss_pred             hHHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC---CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          2 AEATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE---LNSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         2 ~~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~---~~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      +.+.+.+++ +++|.+||||.+|..+.+++++++.++||+|++++. +.   ...++|+||+.|++..++.+++++++++
T Consensus        56 a~~~a~~l~~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~  135 (389)
T cd06352          56 ALLAAVDLYWEHNVDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWF  135 (389)
T ss_pred             hHHHHHHHHhhcCCcEEECCCChhHHHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHc
Confidence            345556666 468999999999999999999999999999998753 21   2356899999999999999999999999


Q ss_pred             CCcEEEEEeecC--cchhhHHHHHhCCCCCCceEEEE-ecC----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         77 NWTKVAIVYEED--NGLFKLQELVKTPPTLKTEMYIR-HAN----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        77 ~W~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~~-~~~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|++++++++++  +|...++.+.+.+++.|+++... .++    ..|+..+++++++.+ ++|++.+..+.+..+++||
T Consensus       136 ~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii~~~~~~~~~~~l~q~  214 (389)
T cd06352         136 NWHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIIIMCGSSEDVRELLLAA  214 (389)
T ss_pred             CceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEEEECCHHHHHHHHHHH
Confidence            999999999874  58888888888888889887653 233    267999999999887 7777777778888998874

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>KOG1054|consensus

Probab=99.81  E-value=1.9e-19  Score=137.99  Aligned_cols=143  Identities=21%  Similarity=0.407  Sum_probs=127.6

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      .+++.|++.+.||.||+|-.+..+...+.++|+.+++|+|++++.. +...+|.++|+|+   +..++++++.||+|.++
T Consensus        79 ~tnafCsq~s~Gv~Aifg~yd~ks~~~ltsfc~aLh~~~vtpsfp~-~~~~~Fviq~RP~---l~~al~s~i~hy~W~~f  154 (897)
T KOG1054|consen   79 VTNAFCSQFSRGVYAIFGFYDKKSVNTLTSFCGALHVSFVTPSFPT-DGDNQFVIQMRPA---LKGALLSLIDHYKWEKF  154 (897)
T ss_pred             HHHHHHHHHhhhHhhheecccccchhhhhhhccceeeeeecccCCc-CCCceEEEEeCch---HHHHHHHHHHhcccceE
Confidence            3688999999999999999999999999999999999999988733 3455899999998   88899999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEecCC----CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP----STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~----~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      +++||.+.|.+.+|.+.+.+.++++.+....+..    ..|+.+++.+.++..+++++||..+....++.|
T Consensus       155 v~lyD~~rg~s~Lqai~~~a~~~nw~VtA~~v~~~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q  225 (897)
T KOG1054|consen  155 VYLYDTDRGLSILQAIMEAAAQNNWQVTAINVGNINDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQ  225 (897)
T ss_pred             EEEEcccchHHHHHHHHHHHHhcCceEEEEEcCCcccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHH
Confidence            9999999999999999999888899988776642    348999999999999999999999887777765

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.80  E-value=1.4e-18  Score=128.18  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=123.7

Q ss_pred             hHHHHHHHhh-CCcEEEEcCCCCCcHHHH-HHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHh
Q psy18065          2 AEATMCRQLQ-NGVQALFGPSDALLGPHV-QSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRF   75 (149)
Q Consensus         2 ~~~~~c~~~~-~~v~aiiGp~~s~~~~~v-~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~   75 (149)
                      +.+...+++. ++|.+|+||.+|..+.++ ++++...++|+|+++.. +  . ....+|+||+.|++..+..+++++++.
T Consensus        55 a~~~a~~li~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~  134 (312)
T cd06346          55 GVAAATKLVNVDGVPGIVGAACSGVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAE  134 (312)
T ss_pred             HHHHHHHHHhhcCCCEEEccccchhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHH
Confidence            3455677886 489999999999999999 99999999999998742 2  1 234578999999999999999999999


Q ss_pred             cCCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         76 LNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        76 ~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++|++++++|++ ++|......+.+.+++.|+++... .++  ..|+.+++.+|++.+++.|++.+.......+++|+
T Consensus       135 ~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~  212 (312)
T cd06346         135 RGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSA  212 (312)
T ss_pred             cCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHH
Confidence            999999999987 678888888888887888887643 344  36999999999999999999988887888888774

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.80  E-value=1.6e-18  Score=129.23  Aligned_cols=147  Identities=12%  Similarity=0.134  Sum_probs=123.1

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---CCCCcccEEEecCChhHHHHHHHHHHHhcC-
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---ELNSKEFSVNLYPSQKLLNAAFKDVIRFLN-   77 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~-   77 (149)
                      .+...++++ ++|.+|+||.++..+.+++++++..+||+|+++...   ..+.++++||+.|++..+..++++++++++ 
T Consensus        60 ~~~~~~li~~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  139 (345)
T cd06338          60 ARAYERLITQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDP  139 (345)
T ss_pred             HHHHHHHHhhcCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCchHHHHHHHHHHHHhcCC
Confidence            345567776 489999999999999999999999999999987532   135668999999999999999999999888 


Q ss_pred             -CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 -WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 -W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                       |++++++|++ +++....+.+.+.+++.|+++.. ..++  ..|+.+++.+|++.+++.|++.+....+..+++|+
T Consensus       140 ~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~  216 (345)
T cd06338         140 RPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQM  216 (345)
T ss_pred             CCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence             9999999987 47777777777777778888764 3444  26899999999999999999999888888888874

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.80  E-value=2.5e-18  Score=128.28  Aligned_cols=148  Identities=15%  Similarity=0.138  Sum_probs=122.1

Q ss_pred             hHHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CC--C----CCCcccEEEecCChhHHHHHHHHHH
Q psy18065          2 AEATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRL-DL--E----LNSKEFSVNLYPSQKLLNAAFKDVI   73 (149)
Q Consensus         2 ~~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~--~----~~~~~~~~~~~p~~~~~~~ai~~ll   73 (149)
                      +.+..++++++ +|.+|+||.++..+.+++++++.+++|+|+++. .+  .    ....+++||+.|++..+..++++++
T Consensus        55 a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~  134 (344)
T cd06345          55 AVRAFERLVSQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADAL  134 (344)
T ss_pred             HHHHHHHHhccCCceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHH
Confidence            45678899874 899999999999999999999999999999763 22  1    1356889999999999999999988


Q ss_pred             Hh-----cCCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHH
Q psy18065         74 RF-----LNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQ  144 (149)
Q Consensus        74 ~~-----~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~  144 (149)
                      .+     ++|++|++++++ ++|....+.+.+.+++.|+++... .++  ..|+..++.+|++++++.|++.+.......
T Consensus       135 ~~~~~~~~~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~  214 (344)
T cd06345         135 KETLVDKHGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVL  214 (344)
T ss_pred             HHhhcccCCCceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHH
Confidence            76     899999999988 567777777777777778887553 343  368999999999999999999998877777


Q ss_pred             HHhhC
Q psy18065        145 FFRAV  149 (149)
Q Consensus       145 il~qA  149 (149)
                      +++|+
T Consensus       215 ~~~~~  219 (344)
T cd06345         215 FTQQW  219 (344)
T ss_pred             HHHHH
Confidence            87764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=99.79  E-value=3.7e-18  Score=126.54  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=119.3

Q ss_pred             HHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--CCCcccEEEecCChhHHHHHHHHHH-HhcCCcE
Q psy18065          5 TMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--LNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWTK   80 (149)
Q Consensus         5 ~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~~   80 (149)
                      ...++++++|.+|+||.++..+.+++.+++..+||+|+++.. +.  ...++++||+.|++..++.++++++ ++++|++
T Consensus        58 ~~~~li~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (334)
T cd06342          58 VAQKLVDDGVVGVVGHLNSGVTIPASPIYADAGIVMISPAATNPKLTERGYKNVFRVVARDDQQGPAAAKYAVETLKAKK  137 (334)
T ss_pred             HHHHHHhCCceEEECCCccHhHHHhHHHHHhCCCeEEecCCCCchhhcCCCceEEeccCCcHHHHHHHHHHHHHhcCCCE
Confidence            344666668999999999999999999999999999998753 21  2346789999999999999999976 6889999


Q ss_pred             EEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         81 VAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        81 v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |+++|++ ++|....+.+.+.++..|+++.... ++  ..|+...+.+|+++++++|++.+....+..+++++
T Consensus       138 v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~~  210 (334)
T cd06342         138 VAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQM  210 (334)
T ss_pred             EEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHHH
Confidence            9999987 5677777777777777788876543 43  26899999999999999999988887787888764

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.79  E-value=2.1e-18  Score=129.01  Aligned_cols=148  Identities=15%  Similarity=0.179  Sum_probs=123.7

Q ss_pred             hHHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CCCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          2 AEATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--ELNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         2 ~~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      +.+..|+++++ +|.+|+||.++..+.+++.+++..++|+|+++.. +  ....++|+||+.|++..+..++++++++++
T Consensus        58 a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~  137 (347)
T cd06340          58 GATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMFTRDMFDFLKDLN  137 (347)
T ss_pred             HHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEEeccccchHHhhcCCceEEecCCChHHHHHHHHHHHHHhh
Confidence            45678898875 9999999999999999999999999999997642 2  234568899999999999999999998764


Q ss_pred             ------CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHh
Q psy18065         78 ------WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFR  147 (149)
Q Consensus        78 ------W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~  147 (149)
                            |+++++++++ ++|....+.+.+.+++.|+++... .++  ..|+.+++.+|+++++++|++.+....+..+++
T Consensus       138 ~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~  217 (347)
T cd06340         138 EKTGKPLKTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPASYTNDAILLVR  217 (347)
T ss_pred             HhcCCCCceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEcccchhHHHHHH
Confidence                  5999999987 577777777777777788887643 344  368999999999999999999998888888888


Q ss_pred             hC
Q psy18065        148 AV  149 (149)
Q Consensus       148 qA  149 (149)
                      |+
T Consensus       218 ~~  219 (347)
T cd06340         218 TM  219 (347)
T ss_pred             HH
Confidence            74

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.76  E-value=2.6e-17  Score=121.88  Aligned_cols=147  Identities=15%  Similarity=0.181  Sum_probs=118.6

Q ss_pred             HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHH-HhcCC
Q psy18065          3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVI-RFLNW   78 (149)
Q Consensus         3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W   78 (149)
                      .+..|+++++ +|.+|+||.++..+..++.+++..+||+|+++....  .+..+++||+.|++..++.++++++ ++++|
T Consensus        56 ~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~  135 (334)
T cd06347          56 ANAATRLIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSATNPKVTQGKDYVFRVCFIDPFQGTVMAKFATENLKA  135 (334)
T ss_pred             HHHHHHHhcccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCCCCCCcccCCCeEEEeeCCcHHHHHHHHHHHHHhcCC
Confidence            4567888875 999999999999999999999999999999875321  2333588999999888899999976 67899


Q ss_pred             cEEEEEeec--CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEE--DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~--~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++||++  +++....+.+.+.+++.|+++... .++  ..|+.+.++++++.+++.|++.+..+....+++|+
T Consensus       136 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~  211 (334)
T cd06347         136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQA  211 (334)
T ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHH
Confidence            999999975  466666666776666778887543 333  36899999999999999999999888888887764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.74  E-value=6.5e-17  Score=120.66  Aligned_cols=148  Identities=12%  Similarity=0.171  Sum_probs=118.2

Q ss_pred             hHHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHH-HHHHHHHHhc-
Q psy18065          2 AEATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLN-AAFKDVIRFL-   76 (149)
Q Consensus         2 ~~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~-~ai~~ll~~~-   76 (149)
                      +.+..|+++++ +|.+|+||.++..+.++.+++...+||+|+++....  ....+|+||+.|++.... ..+..+++++ 
T Consensus        55 a~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~  134 (344)
T cd06348          55 AINAFQTLINKDRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPYVFRVSAPEAVVAPAAIAAALKLNP  134 (344)
T ss_pred             HHHHHHHHhhhcCceEEECCCCcHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCeEEEccCcHHHHHHHHHHHHHHHhc
Confidence            45678999975 899999999999999999999999999999875322  245578999987765544 4455677888 


Q ss_pred             CCcEEEEEeec-C-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         77 NWTKVAIVYEE-D-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        77 ~W~~v~vi~~~-~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|++++++|++ + +|....+.+.+.+++.|+++... .++  ..|+.+++.+|+++++++|++.+....+..+++||
T Consensus       135 ~~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~  212 (344)
T cd06348         135 GIKRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQL  212 (344)
T ss_pred             CCeEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence            99999999975 4 66677777777777788887643 343  36899999999999999999999988888888874

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.72  E-value=2.8e-16  Score=117.59  Aligned_cols=145  Identities=10%  Similarity=0.055  Sum_probs=119.3

Q ss_pred             HHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC--CCcccEEEecCChhHHHHHHHHHH-HhcC
Q psy18065          5 TMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL--NSKEFSVNLYPSQKLLNAAFKDVI-RFLN   77 (149)
Q Consensus         5 ~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~--~~~~~~~~~~p~~~~~~~ai~~ll-~~~~   77 (149)
                      ..-++++ ++|.+|+|+.++..+.++..+++..+||+|++... +  ..  ...+|+||+.|++..++.++++++ +.++
T Consensus        58 ~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~  137 (347)
T cd06335          58 NAQELAADEKVVAVLGGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGG  137 (347)
T ss_pred             HHHHHhccCCeEEEEcCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcC
Confidence            3445665 48999999999999999999999999999997642 1  11  335789999999999999999976 5677


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|+++|++ ++|....+.+.+.+++.|+++... .++  ..|+.+.+.+|++.++++|++.+.......+++|+
T Consensus       138 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~  213 (347)
T cd06335         138 FKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGM  213 (347)
T ss_pred             CCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHH
Confidence            9999999987 588888888888888888887643 343  36899999999999999999999888888888763

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins

Probab=99.71  E-value=1.5e-16  Score=118.65  Aligned_cols=147  Identities=12%  Similarity=0.076  Sum_probs=118.8

Q ss_pred             HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhc-
Q psy18065          3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFL-   76 (149)
Q Consensus         3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~-   76 (149)
                      .+..++++.+ +|.+|+||.++..+.+++.+++..+||+|++... +  . ...++++||+.|++..+..+++++++.+ 
T Consensus        56 ~~~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  135 (346)
T cd06330          56 IREARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLD  135 (346)
T ss_pred             HHHHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhC
Confidence            4567899875 8999999999999999999999999999997642 2  1 2356889999999999999999999876 


Q ss_pred             -CCcEEEEEeec-CcchhhHHHHHhCCCCCCce--EEEEec-C--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         77 -NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTE--MYIRHA-N--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        77 -~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~--v~~~~~-~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                       +|+++++++.+ ++|....+.+.+.+++.|.+  +..... +  ..|+...+.+|++.+++.|++.+.......+++||
T Consensus       136 ~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~~~~  215 (346)
T cd06330         136 KKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFVRQA  215 (346)
T ss_pred             cCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence             49999999987 57777777777776666443  322222 2  36899999999999999999988877777888774

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)

Probab=99.71  E-value=2.4e-16  Score=117.18  Aligned_cols=148  Identities=10%  Similarity=-0.050  Sum_probs=119.4

Q ss_pred             hHHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcE
Q psy18065          2 AEATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTK   80 (149)
Q Consensus         2 ~~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~   80 (149)
                      +.+..++++++ +|.+|+||.+|..+.++.++++..++|+|+++........+++||+.|++..+..++++.+...+|++
T Consensus        55 a~~~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  134 (333)
T cd06331          55 AAKAARRLIRDDKVDAVFGCYTSASRKAVLPVVERGRGLLFYPTQYEGGECSPNVFYTGATPNQQLLPLIPYLMEKYGKR  134 (333)
T ss_pred             HHHHHHHHHhccCCcEEEecccHHHHHHHHHHHHhcCceEEeCCCCCCCcCCCCeEEccCChHHhHHHHHHHHHHhcCCe
Confidence            34567888875 89999999999999999999999999999976432223447889999999888999999775555999


Q ss_pred             EEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         81 VAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        81 v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++.+ ++|....+.+...+++.|.++.. ..++  ..|+.+++.++++.+++.|++.+.......+++|+
T Consensus       135 v~il~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~~~  207 (333)
T cd06331         135 FYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTLVGDSNVAFYRQF  207 (333)
T ss_pred             EEEECCCchhHHHHHHHHHHHHHHcCCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEecCCCChHHHHHHH
Confidence            9999987 56766666777777777877654 3344  36899999999999999999998888788888874

This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t

>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins

Probab=99.71  E-value=2.7e-16  Score=117.43  Aligned_cols=148  Identities=7%  Similarity=0.031  Sum_probs=121.1

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHH-------HHhhcccCCCceeeccC-CC--C-CCcccEEEecCChhHHHHHHH
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHV-------QSICEALDVPHMESRLD-LE--L-NSKEFSVNLYPSQKLLNAAFK   70 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v-------~~~~~~~~iP~is~~~~-~~--~-~~~~~~~~~~p~~~~~~~ai~   70 (149)
                      +.+..+++++++|.+|+||.++..+.++       ++++..+++|+|+++.. +.  . ...+++||+.|++..+..+++
T Consensus        55 a~~~a~~lv~~~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~  134 (342)
T cd06329          55 ALRKAQKAIDDGVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFWHFRTDANTDMKMEALA  134 (342)
T ss_pred             HHHHHHHHHHhCCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcceEEEecCChHHHHHHHH
Confidence            3456778888899999999999998888       78889999999998642 21  2 345789999999999999999


Q ss_pred             HHHHhcC-CcEEEEEeec-CcchhhHHHHHhCCCC--CCceEEEEe-c--CC-CchHHHHHHHHhCCCceEEEecCchhH
Q psy18065         71 DVIRFLN-WTKVAIVYEE-DNGLFKLQELVKTPPT--LKTEMYIRH-A--NP-STYRNVLREIRQKEIFNLIIDTSTTHI  142 (149)
Q Consensus        71 ~ll~~~~-W~~v~vi~~~-~~~~~~l~~l~~~~~~--~~~~v~~~~-~--~~-~d~~~~l~~i~~~~~~~iil~~~~~~~  142 (149)
                      +++...+ ||++++++.+ .+|....+.+.+.+++  .|.++.... +  .. .|+.+++.++++.+++.|++.......
T Consensus       135 ~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~  214 (342)
T cd06329         135 SYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGNDL  214 (342)
T ss_pred             HHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCchH
Confidence            9998765 9999999987 5788888888888877  788775432 3  24 689999999999999999998877777


Q ss_pred             HHHHhhC
Q psy18065        143 SQFFRAV  149 (149)
Q Consensus       143 ~~il~qA  149 (149)
                      ..+++|+
T Consensus       215 ~~~~~~~  221 (342)
T cd06329         215 LLLVKQA  221 (342)
T ss_pred             HHHHHHH
Confidence            7888764

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

Probab=99.71  E-value=5.8e-16  Score=112.07  Aligned_cols=146  Identities=21%  Similarity=0.294  Sum_probs=115.9

Q ss_pred             HHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC----CCCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          4 ATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE----LNSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         4 ~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~----~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      +...+++++ +|.+||||.++..+..++.+++.++||+|+++....    ...+++++++.|+...++..+++++++++|
T Consensus        57 ~~~~~l~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  136 (299)
T cd04509          57 AAARRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNW  136 (299)
T ss_pred             HHHHHHhcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCC
Confidence            345666766 899999999988888899999999999999875321    124678999999999999999999999999


Q ss_pred             cEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++++.++ ++..+.+.+.+.+++.|+++... .++.  .++.+.++++++.+++.|++.++...+..+++++
T Consensus       137 ~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~  211 (299)
T cd04509         137 KKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQA  211 (299)
T ss_pred             cEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHH
Confidence            9999999874 56666666777777777776542 3332  5789999999988888887777767888887763

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th

>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.71  E-value=3.9e-16  Score=117.20  Aligned_cols=146  Identities=14%  Similarity=0.139  Sum_probs=120.4

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---CC-CCcccEEEecCChhHHHHHHHHH-HHhcC
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---EL-NSKEFSVNLYPSQKLLNAAFKDV-IRFLN   77 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~~-~~~~~~~~~~p~~~~~~~ai~~l-l~~~~   77 (149)
                      +...++++ ++|.+|+||.++..+..+..++...+||+|+++...   .. +.++|+||+.|++..+..++++. +++++
T Consensus        64 ~~a~~li~~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g  143 (362)
T cd06343          64 EQTRKLVESDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKP  143 (362)
T ss_pred             HHHHHHHhhcCeEEEEecCCcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCC
Confidence            34556775 689999999999999999999999999999975421   22 35688999999999999999995 46889


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++++++|++ ++|....+.+.+.+++.|+++... .++  ..|+.+++.+|++++++.|++.+....+..+++|+
T Consensus       144 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~  219 (362)
T cd06343         144 NAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKA  219 (362)
T ss_pred             CceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence            9999999987 578777778888887788887643 343  36899999999999999999999887788888774

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems

Probab=99.70  E-value=6.5e-16  Score=115.11  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHH-HhcCCc
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWT   79 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~   79 (149)
                      +..-++++ ++|.+++|+.+|..+.+++++++..++|+|+++.. +. .+..+|+||+.|++..+..++++++ +.++|+
T Consensus        57 ~~a~~li~~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  136 (340)
T cd06349          57 TIAQKFVADPRIVAVLGDFSSGVSMAASPIYQRAGLVQLSPTNSHPDFTKGGDFIFRNSTSQAIEAPLLADYAVKDLGFK  136 (340)
T ss_pred             HHHHHHhccCCeEEEECCCccHhHHHhHHHHHhCCCeEEecCCCCCccccCCCeEEEccCCcHHHHHHHHHHHHHHcCCc
Confidence            33456775 57999999999999999999999999999998642 22 2346889999999988889999975 788999


Q ss_pred             EEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++|.+ ++|....+.+.+.+++.|+++... .++  ..|+.+.+.+|++++++.|++.+.......+++|+
T Consensus       137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~  210 (340)
T cd06349         137 KVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQA  210 (340)
T ss_pred             EEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHH
Confidence            99999987 678777788888887788888653 333  36899999999999999999999888888888763

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.69  E-value=5.6e-16  Score=115.93  Aligned_cols=146  Identities=12%  Similarity=0.137  Sum_probs=120.0

Q ss_pred             HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--CCCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      .+...+++++ +|.+|+|+.++..+.. ..++...++|+|+++.. +.  ....+|+||+.|++..+..+++++++..+|
T Consensus        60 ~~~~~~li~~~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~  138 (347)
T cd06336          60 AANARRLVQQDGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSDLSIDTAGNPLTFRVPPIYNVYGVPFLAYAKKPGG  138 (347)
T ss_pred             HHHHHHHHhhcCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCcccccccCCceEEEecCCchhHHHHHHHHHhhcCC
Confidence            3456678865 8999999999988888 99999999999998753 22  234578999999999999999999988999


Q ss_pred             cEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCch-hHHHHHhhC
Q psy18065         79 TKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTT-HISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~-~~~~il~qA  149 (149)
                      ++|++++.+ ++|....+.+.+.+++.|+++... .++  ..|+.+++.+|++++++.|++.+... ....+++|+
T Consensus       139 ~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~  214 (347)
T cd06336         139 KKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIKQA  214 (347)
T ss_pred             ceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHH
Confidence            999999987 577777777777777788887543 333  37999999999999999999988877 888888773

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.69  E-value=1.1e-15  Score=113.57  Aligned_cols=142  Identities=11%  Similarity=0.072  Sum_probs=113.1

Q ss_pred             HHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhcC-CcEEE
Q psy18065          7 CRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN-WTKVA   82 (149)
Q Consensus         7 c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~-W~~v~   82 (149)
                      -++++ ++|.+|+|+.+|..+.++.++++..++|+|+++.. +. .+..+|+||+.|++..+..++++++++.+ |++++
T Consensus        59 ~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~  138 (332)
T cd06344          59 DELVKDPEILGVVGHYSSDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFFRTVPSNAVAARALAKYLKKKNKIKKVA  138 (332)
T ss_pred             HHHhcccCceEEEcCCCcHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEE
Confidence            35655 48999999999999999999999999999997642 21 24568999999999999999999998776 99999


Q ss_pred             EEeec-C-cchhhHHHHHhCCCC-CCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         83 IVYEE-D-NGLFKLQELVKTPPT-LKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        83 vi~~~-~-~~~~~l~~l~~~~~~-~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++|++ + +|....+.+...+++ .|.++... .+.  ..|+.+.+.++++.++++|++.+.......+++|
T Consensus       139 ~i~~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~  210 (332)
T cd06344         139 IFYNSTSPYSQSLKQEFTSALLERGGGIVVTPCDLSSPDFNANTAVSQAINNGATVLVLFPDTDTLDKALEV  210 (332)
T ss_pred             EEeCCCchHhHHHHHHHHHHHHHhcCCeeeeeccCCCCCCCHHHHHHHHHhcCCCEEEEeCChhHHHHHHHH
Confidence            99987 4 676666677777666 47666432 232  2468889999999999999999887667777765

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional

Probab=99.68  E-value=1.4e-15  Score=114.82  Aligned_cols=145  Identities=7%  Similarity=0.074  Sum_probs=117.9

Q ss_pred             HHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--CCCcccEEEecCChhHHHHHHHHHH-HhcCCcE
Q psy18065          5 TMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--LNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWTK   80 (149)
Q Consensus         5 ~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~~   80 (149)
                      ..-++++++|.+|+|+.+|..+.+++.+++..++|+|+++.. +.  ...++|+||+.|.+..+..++++.+ +.++|++
T Consensus        84 ~~~~Li~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~  163 (369)
T PRK15404         84 VANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPKR  163 (369)
T ss_pred             HHHHHHhCCceEEEcCCCchhHHHhHHHHHHCCCeEEecCCCCHHHhcCCCceEEeCCCCcHHHHHHHHHHHHHhcCCCE
Confidence            344677788999999999999999999999999999997642 22  2356889999999998999999965 6789999


Q ss_pred             EEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         81 VAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        81 v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++++|++ ++|....+.+.+.+++.|.++... .++  ..|+.+++.++++.+++.|++......+..+++|+
T Consensus       164 va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~~  236 (369)
T PRK15404        164 IAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQA  236 (369)
T ss_pred             EEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHHH
Confidence            9999998 578777777877777888887543 343  36999999999999999988776666777787764

>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family

Probab=99.65  E-value=3e-15  Score=111.35  Aligned_cols=146  Identities=9%  Similarity=0.043  Sum_probs=119.0

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      +..-++++ ++|.+|+|+.++..+.++.++++..++|+|+++.. +  . ....+|+||+.|++..+..++++++...+|
T Consensus        56 ~~~~~l~~~~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  135 (334)
T cd06327          56 AKAREWIDRDGVDMIVGGPNSAVALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGG  135 (334)
T ss_pred             HHHHHHHhhcCceEEECCccHHHHHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcC
Confidence            33446665 48999999999999999999999999999998642 2  1 123588999999999999999998766679


Q ss_pred             cEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++++.+ ++|......+.+.+++.|.++.... ++  ..|+.+++.++++.+++.|++.+....+..+++|+
T Consensus       136 ~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~  210 (334)
T cd06327         136 KKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQA  210 (334)
T ss_pred             CeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHH
Confidence            999999987 5787778888887777888875432 33  36999999999999999999988888888888763

Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway

Probab=99.63  E-value=1.6e-14  Score=107.44  Aligned_cols=140  Identities=10%  Similarity=0.014  Sum_probs=110.3

Q ss_pred             HHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcE
Q psy18065          6 MCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTK   80 (149)
Q Consensus         6 ~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~   80 (149)
                      .-+++. ++|.+|+||.++..+.+++.++...++|+|+++..+   . ....+|+||+.|++..+..++.++++..+|++
T Consensus        57 ~~~lv~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~  136 (333)
T cd06359          57 AERLIKRDKVDFVTGVVFSNVLLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKR  136 (333)
T ss_pred             HHHHHhhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCe
Confidence            345665 489999999999999999999999999999986422   1 12368999999999999999999998889999


Q ss_pred             EEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         81 VAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        81 v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      +++++++ ++|....+.+.+.++.   .+.... ++  ..|+.+++.++++++++.|++.........+++|
T Consensus       137 vail~~~~~~g~~~~~~~~~~~~~---~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~  205 (333)
T cd06359         137 VFLIAPNYQAGKDALAGFKRTFKG---EVVGEVYTKLGQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQ  205 (333)
T ss_pred             EEEEecCchhhHHHHHHHHHHhCc---eeeeeecCCCCCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHH
Confidence            9999987 5777766766665532   222222 22  3689999999999999999997777767777776

This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene

Probab=99.62  E-value=2.8e-14  Score=105.94  Aligned_cols=146  Identities=10%  Similarity=0.026  Sum_probs=117.9

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      +...+++. ++|.+|+|+.++..+..+..++...++|+|+++.. +  . ...++++||+.|++..+...+++++...+|
T Consensus        55 ~~~~~lv~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~  134 (336)
T cd06360          55 EKARKLIEQDKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGY  134 (336)
T ss_pred             HHHHHHHHHhCCcEEEccCccHhHHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCC
Confidence            34556765 68999999998888888889999999999998642 2  1 122578999999999999999999988899


Q ss_pred             cEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++++.+ .++....+.+.+.+++.|+++.... ++  ..||.+++.++++.++++|++.........+++|+
T Consensus       135 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~  209 (336)
T cd06360         135 KKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQY  209 (336)
T ss_pred             CeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence            999999987 5677777778777777888775432 33  37999999999999999999888777788888774

This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

Probab=99.62  E-value=3.1e-14  Score=102.97  Aligned_cols=145  Identities=16%  Similarity=0.228  Sum_probs=114.7

Q ss_pred             HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-C-C-CCcccEEEecCChhHHHHHHHHHHHhcC-Cc
Q psy18065          4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-E-L-NSKEFSVNLYPSQKLLNAAFKDVIRFLN-WT   79 (149)
Q Consensus         4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~-~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~-W~   79 (149)
                      +..++++++++.+++||.++..+..+..++...+||+|++.... . . ...+++|++.|++..+..++++++...+ |+
T Consensus        57 ~~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (298)
T cd06268          57 AAARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVK  136 (298)
T ss_pred             HHHHHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCC
Confidence            34456777789999999998888889999999999999986532 1 1 2467899999999999999999998887 99


Q ss_pred             EEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         80 KVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        80 ~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++++++.+ +.+....+.+.+.++..|+++.... ++  ..++.+.+.++++.+++.|++.++...+..++++
T Consensus       137 ~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~  209 (298)
T cd06268         137 KVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQ  209 (298)
T ss_pred             EEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccchHHHHHHH
Confidence            99999987 4676777777777777777764432 33  2578999999999888888888776667666664

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=99.60  E-value=2.4e-14  Score=107.27  Aligned_cols=146  Identities=11%  Similarity=0.013  Sum_probs=116.5

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHH-hcCCcEE
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR-FLNWTKV   81 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~-~~~W~~v   81 (149)
                      +.+-++++ ++|.+|+|+.+|..+.++.+++...++|++++.........+++||+.+.+..+...+++.+. ..+++++
T Consensus        57 ~~a~~Li~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~v  136 (348)
T cd06355          57 EKARKLLTQDKVAAVFGCWTSASRKAVLPVFERHNGLLFYPVQYEGLEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRF  136 (348)
T ss_pred             HHHHHHHHhCCCcEEEeccchhhHHHHHHHHhccCCceecCCCccCCCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeE
Confidence            34446665 589999999999999999999999999999865322223457889999998888888888775 5689999


Q ss_pred             EEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++++++ ++|....+.+...+++.|..+.... ++  ..|+.+++.++++.+++.|++......+..+++|+
T Consensus       137 aii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~  208 (348)
T cd06355         137 YLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQL  208 (348)
T ss_pred             EEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHHH
Confidence            999988 5787777777777777788876533 33  36899999999999999999988877788888774

This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.

>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides

Probab=99.60  E-value=2.6e-14  Score=106.33  Aligned_cols=143  Identities=13%  Similarity=0.013  Sum_probs=111.4

Q ss_pred             HHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHH-HhcCCcEEE
Q psy18065          5 TMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWTKVA   82 (149)
Q Consensus         5 ~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~~v~   82 (149)
                      ..-++++ ++|.+|+|+.++..+.++..+++ .+||+|+++........+++||+.+++..+..+.++.+ +..+|++|+
T Consensus        58 ~a~~Li~~~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~  136 (333)
T cd06358          58 AAARLVDEGGVDAIIGWHTSAVRNAVAPVVA-GRVPYVYTSLYEGGECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWY  136 (333)
T ss_pred             HHHHHHHhCCCcEEEecCcHHHHHHHHHHHh-cCceEEeCCCcCCCCCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEE
Confidence            3446675 48999999999999999999999 99999997542222345789999998888877677655 678999999


Q ss_pred             EEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      +++++ ++|....+.+...+++.|+.+... .++  ..||.+.+.++++.+++.|++.........+++|
T Consensus       137 i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~  206 (333)
T cd06358         137 LIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQ  206 (333)
T ss_pred             EEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence            99987 567766666666677778877543 343  3689999999999999988887777666777776

This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int

>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen

Probab=99.59  E-value=2.7e-14  Score=106.59  Aligned_cols=145  Identities=10%  Similarity=0.033  Sum_probs=114.3

Q ss_pred             HHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          3 EATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         3 ~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      .+...++++++|.+|+||.++..+.+++.++...++|+|+++..+.....++.||+.+++..+..++++.+...||++++
T Consensus        49 ~~~~~~li~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~k~va  128 (336)
T cd06339          49 AAAARQAVAEGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYARSQGKRRPL  128 (336)
T ss_pred             HHHHHHHHHcCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHHhcCccceE
Confidence            34556677778999999999998888989999999999997643221125788999999999999999988777999999


Q ss_pred             EEeec-CcchhhHHHHHhCCCCCCceEEEE-ecCC--CchHHHHHHHHhC---------------------CCceEEEec
Q psy18065         83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HANP--STYRNVLREIRQK---------------------EIFNLIIDT  137 (149)
Q Consensus        83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~~--~d~~~~l~~i~~~---------------------~~~~iil~~  137 (149)
                      +++++ ++|....+.+.+.+++.|..+... .++.  .|+...+.+|++.                     +++.|++.+
T Consensus       129 ii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~  208 (336)
T cd06339         129 VLAPDGAYGQRVADAFRQAWQQLGGTVVAIESYDPSPTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQDIDAIDAVA  208 (336)
T ss_pred             EEecCChHHHHHHHHHHHHHHHcCCceeeeEecCCCHHHHHHHHHHHhccccchhhhhhhhhcccCccccCCCCcEEEEe
Confidence            99987 577777778888887778776543 3443  6899999999998                     888888877


Q ss_pred             Cch-hHHHHHh
Q psy18065        138 STT-HISQFFR  147 (149)
Q Consensus       138 ~~~-~~~~il~  147 (149)
                      ... .+..+.+
T Consensus       209 ~~~~~~~~~~~  219 (336)
T cd06339         209 LPDGEARLIKP  219 (336)
T ss_pred             cChhhhhhhcc
Confidence            664 4444443

This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).

>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria

Probab=99.57  E-value=1.8e-13  Score=101.99  Aligned_cols=143  Identities=10%  Similarity=0.004  Sum_probs=111.3

Q ss_pred             HHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCC--C-CCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          5 TMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLE--L-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         5 ~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~--~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      ..-++++ ++|.+|+||.+|..+.++.++++..++|+|+++. .+.  . ...+|+||+.+++..+...+++.+... ++
T Consensus        59 ~~~~li~~~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~  137 (333)
T cd06328          59 LARELIGDDGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GK  137 (333)
T ss_pred             HHHHHHHhcCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CC
Confidence            4446665 4899999999999999999999999999998653 222  2 234789999888777777777776554 89


Q ss_pred             EEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCch-hHHHHHhh
Q psy18065         80 KVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTT-HISQFFRA  148 (149)
Q Consensus        80 ~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~-~~~~il~q  148 (149)
                      +++++|.+ ++|....+.+.+.+++.|+++.... ++  ..|+.+.+.+|+..++++|++..... ....+++|
T Consensus       138 ~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~  211 (333)
T cd06328         138 KIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQRLLDALKKVLFVIWAGAGGPWPKLQQ  211 (333)
T ss_pred             eEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeCCCCCcchHHHHHHHHhcCCCEEEEEecCchhHHHHHHH
Confidence            99999987 6888888888888888898876533 33  36899999999999999988765443 45555555

Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins

Probab=99.57  E-value=1.7e-13  Score=101.80  Aligned_cols=145  Identities=16%  Similarity=0.116  Sum_probs=115.8

Q ss_pred             HHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---CCCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          4 ATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         4 ~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      +...+++++ +|.+|||+.++..+..+.+++...++|+|+++...   .....++++++.|++......+++++...||+
T Consensus        58 ~~~~~l~~~~~v~avig~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  137 (336)
T cd06326          58 ANTRKLIEDDKVFALFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLK  137 (336)
T ss_pred             HHHHHHHhhcCcEEEEeCCCchhHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCc
Confidence            456777874 89999999888777888899999999999975432   12235788999999999999999999999999


Q ss_pred             EEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         80 KVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        80 ~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++++++++ .++..+.+.+.+.+++.|.++... .++  ..|+.+++.++++++++.|++.++...+..++++
T Consensus       138 ~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~  210 (336)
T cd06326         138 RIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRA  210 (336)
T ss_pred             eEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHH
Confidence            99999987 467777888888777778765432 333  2689999999999989888888776667777776

The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.57  E-value=8e-14  Score=104.69  Aligned_cols=145  Identities=14%  Similarity=0.081  Sum_probs=115.4

Q ss_pred             HHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---C-CCCcccEEEecCChhHHHHHHHHHHHhcC-
Q psy18065          4 ATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN-   77 (149)
Q Consensus         4 ~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~-   77 (149)
                      +..-+++.+ +|.+|+ +.+|..+.++.+++...+||+|+++...   . ...++|+||+.|++..+..++++++...+ 
T Consensus        57 ~~a~~Li~~~~V~~i~-~~~S~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~  135 (351)
T cd06334          57 ECYERLKGEDGAVAFQ-GWSTGITEALIPKIAADKIPLMSGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEG  135 (351)
T ss_pred             HHHHHHhccCCcEEEe-cCcHHHHHHhhHHHhhcCCcEEecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcc
Confidence            344466665 677765 5677888899999999999999986432   1 23467999999999999999999886544 


Q ss_pred             ----CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 ----WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 ----W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                          .++|++++++ ++|....+.+.+.+++.|+++.... ++  ..|+.+.+.+|++.+++.|++.........+++|+
T Consensus       136 ~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~  215 (351)
T cd06334         136 GKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEA  215 (351)
T ss_pred             cCCCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHH
Confidence                6999999987 5787777777777777888876543 33  26999999999999999999998888888888874

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]

Probab=99.56  E-value=9.8e-14  Score=104.77  Aligned_cols=146  Identities=16%  Similarity=0.211  Sum_probs=119.8

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--C-CCcccEEEecCChhHHHHHHHHHH-HhcC
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--L-NSKEFSVNLYPSQKLLNAAFKDVI-RFLN   77 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~-~~~~~~~~~~p~~~~~~~ai~~ll-~~~~   77 (149)
                      +..-+++. ++|.+|+|+.+|..+.++.++++..++|+|+++.+ +.  . ...++.||+.|++..++.++++++ +.++
T Consensus        68 ~~A~~li~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~  147 (366)
T COG0683          68 AVARKLITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGG  147 (366)
T ss_pred             HHHHHHHhhcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcC
Confidence            34456665 78999999999999999999999999999999752 21  2 233448999999999999999977 5777


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      .+++++++++ .+|....+.+.+.++..|..+.. ..+.+  .++..++.+++.+++++|++.+.......++||+
T Consensus       148 ~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~  223 (366)
T COG0683         148 KKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQA  223 (366)
T ss_pred             CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECCCCccchHHHHHH
Confidence            7899999998 68988888888888888886433 33433  4699999999999999888888888888888874

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.55  E-value=2e-13  Score=102.64  Aligned_cols=147  Identities=12%  Similarity=0.152  Sum_probs=112.4

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC--------C--CCCcccEEEecCChhHHHHHHHH
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL--------E--LNSKEFSVNLYPSQKLLNAAFKD   71 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~--------~--~~~~~~~~~~~p~~~~~~~ai~~   71 (149)
                      .+..-++++ ++|.+|+|+.+|..+.+++.+++..+||+|+++...        .  ...++|.||..+++..+..++++
T Consensus        58 ~~~a~~li~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  137 (357)
T cd06337          58 GLVAQELILTDKVDLLLAGGTPDTTNPVSDQCEANGVPCISTMAPWQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVG  137 (357)
T ss_pred             HHHHHHHHhccCccEEEecCCcchhhHHHHHHHHhCCCeEEeccchhhhhccCCCCcccCCceeEEecCCHHHHHHHHHH
Confidence            344556776 489999999999999999999999999999864210        1  12357889999998888888888


Q ss_pred             HHHhcC-CcEEEEEeec-CcchhhHHHHH---hCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHH
Q psy18065         72 VIRFLN-WTKVAIVYEE-DNGLFKLQELV---KTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHIS  143 (149)
Q Consensus        72 ll~~~~-W~~v~vi~~~-~~~~~~l~~l~---~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~  143 (149)
                      .++..+ ++++++++++ ++|....+.+.   +.+++.|+.+... .++  ..||.+++.+|++++++.|++.+....+.
T Consensus       138 ~~~~~~~~k~v~ii~~~~~~g~~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~~~~~~~~  217 (357)
T cd06337         138 MWKQLETNKKVGILYPNDPDGNAFADPVIGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAIPPDFA  217 (357)
T ss_pred             HHHhCCCCceEEEEeecCchhHHHHHhhhcccHHHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeCCCccHHH
Confidence            888777 9999999987 56654444333   3344568776543 343  36999999999999999999888888888


Q ss_pred             HHHhhC
Q psy18065        144 QFFRAV  149 (149)
Q Consensus       144 ~il~qA  149 (149)
                      .+++|+
T Consensus       218 ~~~~~~  223 (357)
T cd06337         218 TFWRQA  223 (357)
T ss_pred             HHHHHH
Confidence            888773

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes

Probab=99.53  E-value=6.8e-13  Score=98.26  Aligned_cols=139  Identities=11%  Similarity=0.027  Sum_probs=108.4

Q ss_pred             HHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---CC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          7 CRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         7 c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      -++..+ +|.+|||+.++.....+...+...++|+|+++...   .. ...+++||+.|++..+...+++++...+|+++
T Consensus        58 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v  137 (333)
T cd06332          58 RKLIEQDKVDVVVGPVFSNVALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKV  137 (333)
T ss_pred             HHHHHHcCCcEEEcCCccHHHHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceE
Confidence            355554 89999999888888888899999999999986422   11 23588999999999999999999988999999


Q ss_pred             EEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         82 AIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        82 ~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++++.+ +++....+.+.+.++  + .+.. ..++  ..|+.+++.++++.+++.|++.........+++|
T Consensus       138 ~il~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~  205 (333)
T cd06332         138 VIIAPDYAAGKDAVAGFKRTFK--G-EVVEEVYTPLGQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQ  205 (333)
T ss_pred             EEEecCcchhHHHHHHHHHhhc--E-EEeeEEecCCCCcchHHHHHHHHhcCCCEEEEecccchHHHHHHH
Confidence            999986 567777777777665  3 2222 2222  3589999999999999999987776677777776

This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids

Probab=99.53  E-value=5.9e-13  Score=98.08  Aligned_cols=142  Identities=17%  Similarity=0.150  Sum_probs=111.2

Q ss_pred             HHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC--CCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEE
Q psy18065          7 CRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL--ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAI   83 (149)
Q Consensus         7 c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~--~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~v   83 (149)
                      -++++ ++|.++||+.++..+..+..++...++|+|+++...  .....+|+||+.|++......+++.+...||+++++
T Consensus        59 ~~li~~~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vai  138 (312)
T cd06333          59 RKLIEEDKVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAAIVEPKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAF  138 (312)
T ss_pred             HHHHhhCCeEEEECCCCCHHHHHHHHHHHhcCCCEEEccCCccccCCCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence            34665 489999999887777788889999999999986422  123446889999999999999999999999999999


Q ss_pred             Eeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         84 VYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        84 i~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++.+ +++..+.+.+.+.+++.|+++.. ..++  ..|+...+.++++.+++.|++..+...+..++++
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~  207 (312)
T cd06333         139 IGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKN  207 (312)
T ss_pred             EecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHH
Confidence            9986 46777777787777778887654 2343  2578899999988888888888766656666665

This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type

Probab=99.52  E-value=4.1e-13  Score=101.71  Aligned_cols=146  Identities=9%  Similarity=0.062  Sum_probs=112.7

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHH-hcCCcE
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR-FLNWTK   80 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~-~~~W~~   80 (149)
                      .+..-++++ ++|.+|+|+.+|..+.++.+++...++|+|...........+|+||+.|++..+..++++++. ..+ ++
T Consensus        57 ~~~a~~li~~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g-~~  135 (374)
T TIGR03669        57 QELTRRLLNRDKVDALWAGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEYG-KK  135 (374)
T ss_pred             HHHHHHHHHhCCCCEEEcCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcCC-Ce
Confidence            344556775 689999999999999999999999999999754211122347899999999989999999875 567 56


Q ss_pred             EEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         81 VAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        81 v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++++ ++|....+.+.+.+++.|+.+.-. .++  ..||.+++.+|++++++.|++.........+++|+
T Consensus       136 va~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~~pD~V~~~~~g~~~~~~~kq~  208 (374)
T TIGR03669       136 IYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSMLVGANHASFYEQA  208 (374)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHHcCCeEEeEEecCCCcchHHHHHHHHHHcCCCEEEEcCcCCcHHHHHHHH
Confidence            8889887 577766666666666778776543 343  36999999999999999999987776677788774

Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A

Probab=99.52  E-value=1.2e-13  Score=102.74  Aligned_cols=143  Identities=18%  Similarity=0.265  Sum_probs=113.8

Q ss_pred             HHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHH-HhcCCcEEEE
Q psy18065          6 MCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWTKVAI   83 (149)
Q Consensus         6 ~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~~v~v   83 (149)
                      +-++++ ++|.+|+||.++..+.++..++...++|+|+++........+++||+.|++..+..++++.+ ++++.+++++
T Consensus        61 ~~~l~~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i  140 (343)
T PF13458_consen   61 ARKLIDDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAI  140 (343)
T ss_dssp             HHHHHHTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEE
T ss_pred             HHHhhhhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEE
Confidence            345656 78999999999999999999999999999996542223556889999999999999999975 6689999999


Q ss_pred             EeecC-cchhhHHHHHhCCCCCCceEE-EEecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         84 VYEED-NGLFKLQELVKTPPTLKTEMY-IRHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        84 i~~~~-~~~~~l~~l~~~~~~~~~~v~-~~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++.++ +|....+.+.+.++..|..+. ...++  ..|+..++.++++.+++.|++.+.......+++|
T Consensus       141 v~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~  209 (343)
T PF13458_consen  141 VYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQ  209 (343)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHH
T ss_pred             EecCchhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHHHH
Confidence            99884 676777777777777787764 23343  3789999999999999998888888888888876

...

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=99.51  E-value=4.6e-13  Score=99.80  Aligned_cols=144  Identities=9%  Similarity=-0.004  Sum_probs=112.6

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCcEE
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWTKV   81 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~~v   81 (149)
                      +..-++++ ++|.+|+|+.+|..+.++.++++..++|+|...........+|+||+.+++..+..++++.+.. .+ +++
T Consensus        57 ~~~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~-~~v  135 (334)
T cd06356          57 QYAQRLALQDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMMEKYG-KKV  135 (334)
T ss_pred             HHHHHHHHhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHHccC-CeE
Confidence            34457775 6899999999999999999999999999998643221223478999999999999999997754 45 779


Q ss_pred             EEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         82 AIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        82 ~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++++.+ ++|......+.+.+++.|+.+... .++  ..|+...+.+|+..+++.|++.........+++|
T Consensus       136 ail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~  206 (334)
T cd06356         136 YTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMSILVGANHLSFYRQ  206 (334)
T ss_pred             EEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEEeccCCcHHHHHHH
Confidence            999987 577777777777777778877543 343  3699999999999999999987766666667766

This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C

Probab=99.51  E-value=9.6e-14  Score=103.30  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=101.7

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCCCCCcccEEEecCChhHHHHHHHHHH------HhcCCcEEEEEee
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESRL-DLELNSKEFSVNLYPSQKLLNAAFKDVI------RFLNWTKVAIVYE   86 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~~~~~~~~~~~~p~~~~~~~ai~~ll------~~~~W~~v~vi~~   86 (149)
                      -.+++||.|...+..+++....|++|+||.|. ..+.++...+.|+.|++...+..++++.      ++++|+. ++||.
T Consensus        82 gcv~lGP~CtYat~~~~~~~~~~~~P~ISaGsfglscd~k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~-ayvyk  160 (380)
T cd06369          82 GCVLLGPSCTYATFQMVDDEFNLSLPIISAGSFGLSCDYKENLTRLLPPARKISDFFVDFWKEKNFPKKPKWET-AYVYK  160 (380)
T ss_pred             CcEEEcCccceehhhhhhhhhcCCCceEeccccccCCCchhhhhhcCchHHHHHHHHHHHHhcccccCCCCCce-eEEEc
Confidence            58999999999999999999999999999874 5555666789999999999999999999      5999985 45897


Q ss_pred             cC----cchhhHHHHHhCCCCCCceEEEEe-cC-CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         87 ED----NGLFKLQELVKTPPTLKTEMYIRH-AN-PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        87 ~~----~~~~~l~~l~~~~~~~~~~v~~~~-~~-~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++    .+...+..+....+..+..+.+.. +. .+++.++++++++++ |+||+.|+++..++++.+
T Consensus       161 ~~~~~edCf~~i~al~a~~~~f~~~~~~~~~l~~~~~~~~il~~~~~~s-RIiImCG~p~~ir~lm~~  227 (380)
T cd06369         161 KQENTEDCFWYINALEAGVAYFSSALKFKELLRTEEELQKLLTDKNRKS-NVIIMCGTPEDIVNLKGD  227 (380)
T ss_pred             CCCCccceeeEhHhhhhhhhhhhhcccceeeecCchhHHHHHHHhccCc-cEEEEeCCHHHHHHHHhc
Confidence            64    244444444443333233343333 22 367899999988765 688888899999998865

Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein

Probab=99.49  E-value=9.1e-13  Score=99.17  Aligned_cols=145  Identities=8%  Similarity=-0.051  Sum_probs=112.3

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCcEE
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWTKV   81 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~~v   81 (149)
                      +..-++++ ++|.+|+|+.+|..+.++.++++..++|++.+.........+++||+.|++..+..++++.+.. .|.+++
T Consensus        58 ~~a~~Lv~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v  137 (359)
T TIGR03407        58 EKARKLITQDKVAAVFGCWTSASRKAVLPVFEENNGLLFYPVQYEGEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRF  137 (359)
T ss_pred             HHHHHHHhhCCCcEEEcCCcHHHHHHHHHHHhccCCceEeCCcccCcccCCCEEEcCCChHHHHHHHHHHHHhccCCceE
Confidence            34456775 6899999999999999999999999999987643211234578899999999888888887754 699999


Q ss_pred             EEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         82 AIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        82 ~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++++.+ ++|....+.+.+.+++.|+.+... .++  ..|+.+++.+|++.+++.|++.........+++|
T Consensus       138 ~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~~~~~~~~~~~~  208 (359)
T TIGR03407       138 FLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQ  208 (359)
T ss_pred             EEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEeccCCCHHHHHHH
Confidence            999987 577666566666667778776543 333  3689999999999999998876666666667776

Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.

>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family

Probab=99.38  E-value=2.1e-11  Score=91.82  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=110.0

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      +..-++++ ++|.+|+|+.++..+.++.++++..++|++.++........++.|++.+++.....++++++..-+=++++
T Consensus        57 ~~a~~li~~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~  136 (360)
T cd06357          57 ALAERLLREDGVRVIFGCYTSSSRKAVLPVVERHDALLWYPTLYEGFEYSPNVIYTGAAPNQNSVPLADYLLRHYGKRVF  136 (360)
T ss_pred             HHHHHHHhhCCCcEEEeCccHHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHhcCCcEEE
Confidence            34557775 68999999999999999999999999999986532111223556777777766677888877543338899


Q ss_pred             EEeec-CcchhhHHHHHhCCCCCCceEEEEe---cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIRH---AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~---~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++.+ ++|....+.+.+.+++.|..+....   +.  ..|+.+++.++++.+++.|++.+....+..+++|+
T Consensus       137 ~i~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~d~s~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~  209 (360)
T cd06357         137 LVGSNYIYPYESNRIMRDLLEQRGGEVLGERYLPLGASDEDFARIVEEIREAQPDFIFSTLVGQSSYAFYRAY  209 (360)
T ss_pred             EECCCCcchHHHHHHHHHHHHHcCCEEEEEEEecCCCchhhHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHH
Confidence            99987 5676666666666666787765432   33  36899999999999999999988888888888763

This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.

>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system

Probab=99.33  E-value=1.3e-11  Score=92.72  Aligned_cols=134  Identities=9%  Similarity=0.092  Sum_probs=101.4

Q ss_pred             HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      +..-++++++|.+|+|+.+|..+.++..++...++|+|+++.. +  . .+..+|.||+.|++..+..++++.+..-+++
T Consensus        50 ~~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~k  129 (347)
T TIGR03863        50 AALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWR  129 (347)
T ss_pred             HHHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCC
Confidence            3445667778999999999999999999999999999998643 2  2 2345799999999999999999988767999


Q ss_pred             EEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cCC------CchHHHHHHHHhCCCceEEEec
Q psy18065         80 KVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-ANP------STYRNVLREIRQKEIFNLIIDT  137 (149)
Q Consensus        80 ~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~~------~d~~~~l~~i~~~~~~~iil~~  137 (149)
                      ++++|+.+ ++|....+.+.+.+++.|..+.... ++.      .|+.......+.+++++|++..
T Consensus       130 kvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~~~d~s~~~~~~~~s~pDvv~~~~  195 (347)
T TIGR03863       130 RILLIQGPLPADALYADAFRRSAKRFGAKIVAERPFTFSGDPRRTDQSEVPLFTQGADYDVVVVAD  195 (347)
T ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeEEeccCCchhhhhcccCceeecCCCCCEEEEec
Confidence            99999987 6788777888887777787765432 321      2333212223347888888743

Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.

>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.28  E-value=9.5e-11  Score=87.36  Aligned_cols=144  Identities=9%  Similarity=-0.024  Sum_probs=110.1

Q ss_pred             HHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-CCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          5 TMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         5 ~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      ..-+++++ +|.+|+|+.++.....+ .++...++|+|+++... .....++.+++.+++......+++++..-+.++++
T Consensus        58 ~~~~li~~~~V~~iig~~~s~~~~~~-~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  136 (341)
T cd06341          58 CARDLVEDDKVVAVVGGSSGAGGSAL-PYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGDFAKDQGGTRAV  136 (341)
T ss_pred             HHHHHHHhcCceEEEecccccchhHH-HHHhhcCCceecCCCCCchhhcCCCeEEecCCCcchhHHHHHHHHHcCCcEEE
Confidence            34456665 89999999988777666 88889999999976432 11114667888888888889999999888899999


Q ss_pred             EEeec-C-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         83 IVYEE-D-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        83 vi~~~-~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++.+ + ++......+.+.+++.|+.+... .++  ..|+.+.+.++++.+++.|++......+..+++|+
T Consensus       137 ~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~  208 (341)
T cd06341         137 ALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITVLDAAVCASVLKAV  208 (341)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHH
Confidence            98765 4 67777777888777788766442 233  26899999999999999998887776788887763

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>KOG4440|consensus

Probab=99.21  E-value=7.3e-11  Score=92.00  Aligned_cols=145  Identities=18%  Similarity=0.287  Sum_probs=105.5

Q ss_pred             HHHHHH-HhhCCcEEEEcCCCCCcH-----HHHHHhhcccCCCceeecc-C--CC-CCCcccEEEecCChhHHHHHHHHH
Q psy18065          3 EATMCR-QLQNGVQALFGPSDALLG-----PHVQSICEALDVPHMESRL-D--LE-LNSKEFSVNLYPSQKLLNAAFKDV   72 (149)
Q Consensus         3 ~~~~c~-~~~~~v~aiiGp~~s~~~-----~~v~~~~~~~~iP~is~~~-~--~~-~~~~~~~~~~~p~~~~~~~ai~~l   72 (149)
                      .-.+|+ ++++.|.+|+-....++.     .++.--++.|+||++.... +  .+ .+-++.++|+.|++.+++....++
T Consensus        84 ~~~VC~~li~~~vyav~vSh~~Ts~d~f~p~~vSYT~gFY~iPV~G~~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleM  163 (993)
T KOG4440|consen   84 ALSVCEDLISSQVYAVLVSHPPTSNDHFTPTPVSYTAGFYRIPVLGLTTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEM  163 (993)
T ss_pred             HHHHHHHHHhhheeEEEecCCCCCCcccccccceeeccceeeeeeeeeehhhhhccCceeeeEeecCCCccchhHHHHHH
Confidence            345796 557778777754332222     3445567889999998763 2  33 244566899999999999999999


Q ss_pred             HHhcCCcEEEEEeecC-cch---hhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHH
Q psy18065         73 IRFLNWTKVAIVYEED-NGL---FKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFF  146 (149)
Q Consensus        73 l~~~~W~~v~vi~~~~-~~~---~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il  146 (149)
                      +.+|.|++|.++.++| +|.   .++|.+.+..+. +.. .+-++++  +++.+.|-++|...++++++.++.+++..++
T Consensus       164 l~~~~y~~vi~l~s~d~~gra~~~r~qt~~e~~~~-~~e-~v~~f~p~~~~~t~~l~~~k~~~~rv~~~~as~dDA~~if  241 (993)
T KOG4440|consen  164 LRVYSYNHVILLVSDDHEGRAAQKRLQTLLEERES-KAE-KVLQFDPGTKNVTALLMEAKELEARVIILSASEDDAATIF  241 (993)
T ss_pred             HHHhhcceEEEEEcccccchhHHhHHHHHHHHHhh-hhh-hheecCcccchHHHHHhhhhhhhheeEEeecccchHHHHH
Confidence            9999999999999775 453   345555553222 112 1235554  6789999999999999999999999999999


Q ss_pred             hhC
Q psy18065        147 RAV  149 (149)
Q Consensus       147 ~qA  149 (149)
                      +.|
T Consensus       242 r~A  244 (993)
T KOG4440|consen  242 RAA  244 (993)
T ss_pred             Hhh
Confidence            876

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=99.19  E-value=1.7e-09  Score=76.41  Aligned_cols=141  Identities=15%  Similarity=0.254  Sum_probs=101.2

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      .++..+++.+++|+.+......+...+...++|+|+++.... ....++++++.|++...+..+++++..++|+++++++
T Consensus        52 ~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~  131 (269)
T cd01391          52 RDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIY  131 (269)
T ss_pred             HHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEe
Confidence            344456899999998887766678889999999999875332 1134678899999999999999999999999999999


Q ss_pred             ecC--cchhhHHHHHhCCCCCCceEEEE-ecC--C-CchHHHHHHHHhC-CCceEEEecCchhHHHHHhh
Q psy18065         86 EED--NGLFKLQELVKTPPTLKTEMYIR-HAN--P-STYRNVLREIRQK-EIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        86 ~~~--~~~~~l~~l~~~~~~~~~~v~~~-~~~--~-~d~~~~l~~i~~~-~~~~iil~~~~~~~~~il~q  148 (149)
                      .+.  .+..+.+.+.+..++.+.++... ..+  . .++..+...+++. +.+.|++.++ ..+..++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~-~~a~~~~~~  200 (269)
T cd01391         132 GDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACND-EMAAGALKA  200 (269)
T ss_pred             cCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCc-hHHHHHHHH
Confidence            865  34455566666666666554322 222  1 3577778888876 5666666655 666666553

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>KOG1055|consensus

Probab=99.12  E-value=9.2e-11  Score=93.37  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=116.1

Q ss_pred             HHHHHHhhC--CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          4 ATMCRQLQN--GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         4 ~~~c~~~~~--~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      +..-+++..  ....++|+ |++.+..++.-+..|+.-+++|+.+ |  + .++++++||++||+......++.++++|+
T Consensus       102 k~~fdll~~~p~k~mll~G-Cs~v~~~iaea~~~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~  180 (865)
T KOG1055|consen  102 KALYDLLYNGPNKLMLLGG-CSSVTTLIAEAAKMWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFG  180 (865)
T ss_pred             HHHHHHHHcCCchheeccC-CCCcchHHHhhccccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcC
Confidence            344455543  36778888 9999999999999999999999853 3  2 36778899999999999999999999999


Q ss_pred             CcEEEEEeecCcchhh-HHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEEDNGLFK-LQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~~~~~~~-l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|+.++...+-... ..++.......++.++.++-...|....++++++..++.|+-+-+...++.++-+|
T Consensus       181 w~rvgt~~q~e~~f~~~~~dl~~~~~~~~ieiv~~qsf~~dp~~~vk~l~~~D~RiI~g~f~~~~Arkv~C~~  253 (865)
T KOG1055|consen  181 WKRVATLQQTEEVFSSTLNDLEARLKEAGIEIVFRQSFSSDPADSVKNLKRQDARIIVGLFYETEARKVFCEA  253 (865)
T ss_pred             cceeeeeeeehhhhcchHHHHHHhhhccccEEEEeeccccCHHHHHhhccccchhheeccchHhhhhHHHHhh
Confidence            9999999998765544 44455556667888877776667889999999999988887788888888877654

>KOG1053|consensus

Probab=98.71  E-value=1.2e-06  Score=71.42  Aligned_cols=146  Identities=13%  Similarity=0.189  Sum_probs=97.8

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCC---cHHHHHHhhcccCCCceeeccC--C--C-CCCcccEEEecCChhHHHHHHHHHHH
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDAL---LGPHVQSICEALDVPHMESRLD--L--E-LNSKEFSVNLYPSQKLLNAAFKDVIR   74 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~---~~~~v~~~~~~~~iP~is~~~~--~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~   74 (149)
                      ..+|+++. .+|.+++-...+.   .+..+--++....||.|+....  .  . .+....++++.|+-+.++..++.+++
T Consensus        90 ~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd~gs~flQlg~Sieqqa~Vml~iL~  169 (1258)
T KOG1053|consen   90 TQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKDLGSTFLQLGPSIEQQAQVMLKILE  169 (1258)
T ss_pred             HHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCCCcceEEEeCCcHHHHHHHHHHHHH
Confidence            45899996 5677776555444   3444445677889999998642  1  1 23334579999999999999999999


Q ss_pred             hcCCcEEEEEeecCcc-hhhHHHHHhCCCC--CCceE-EEEecCC--CchHHHH-HHHHhCCCceEEEecCchhHHHHHh
Q psy18065         75 FLNWTKVAIVYEEDNG-LFKLQELVKTPPT--LKTEM-YIRHANP--STYRNVL-REIRQKEIFNLIIDTSTTHISQFFR  147 (149)
Q Consensus        75 ~~~W~~v~vi~~~~~~-~~~l~~l~~~~~~--~~~~v-~~~~~~~--~d~~~~l-~~i~~~~~~~iil~~~~~~~~~il~  147 (149)
                      .|+|..++++.....| ...+..+......  .|+.+ .+...++  +|....+ ..+|+-.+.+|+++|+-+.+..||.
T Consensus       170 ~ydW~~Fs~vtt~~pg~~~f~~~ir~~~d~s~vgwe~i~v~~l~~s~~d~~a~~q~qLkki~a~VillyC~~eea~~IF~  249 (1258)
T KOG1053|consen  170 EYDWYNFSLVTTQFPGNRTFVSLIRQTNDNSHVGWEMINVLTLDPSTDDLLAKLQAQLKKIQAPVILLYCSREEAERIFE  249 (1258)
T ss_pred             HcCcceeEEEEeecCchHHHHHHHHHhhhhccccceeeeeeecCCCCCchHHHHHHHHHhcCCcEEEEEecHHHHHHHHH
Confidence            9999999999887434 4445555544332  24332 1222222  3433333 3455556779999999999999988


Q ss_pred             hC
Q psy18065        148 AV  149 (149)
Q Consensus       148 qA  149 (149)
                      .|
T Consensus       250 ~A  251 (1258)
T KOG1053|consen  250 EA  251 (1258)
T ss_pred             HH
Confidence            65

>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A

Probab=98.20  E-value=9.4e-06  Score=61.05  Aligned_cols=143  Identities=10%  Similarity=0.050  Sum_probs=88.0

Q ss_pred             HHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHH-HHHhcCCcEEEE
Q psy18065          6 MCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD-VIRFLNWTKVAI   83 (149)
Q Consensus         6 ~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~-ll~~~~W~~v~v   83 (149)
                      +-+++ +++|.+|||-.+|.+=.+|.++....+-....+..--.....+..+.+...+..+...+++ ++.+||-+++.+
T Consensus        60 A~~Li~~d~V~~ifGc~TSasRKaVlPvvE~~~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~l  139 (363)
T PF13433_consen   60 AEKLIREDGVRAIFGCYTSASRKAVLPVVERHNALLFYPTQYEGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYL  139 (363)
T ss_dssp             HHHHHHHS---EEEE--SHHHHHHHHHHHHHCT-EEEE-S--------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEE
T ss_pred             HHHHHHhCCccEEEecchhhhHHHHHHHHHhcCceEEeccccccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEE
Confidence            34565 4899999999999999999999999998877644211123346677887776677777777 558999999999


Q ss_pred             Eeec-CcchhhHHHHHhCCCCCCceEEEEec-C--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         84 VYEE-DNGLFKLQELVKTPPTLKTEMYIRHA-N--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        84 i~~~-~~~~~~l~~l~~~~~~~~~~v~~~~~-~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      |.+| -++...-.-+.+..+..|..+.-+++ +  .+|+.+++.+|++..+++|+--...+....|++|
T Consensus       140 vGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF~r~  208 (363)
T PF13433_consen  140 VGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTLVGDSNVAFYRA  208 (363)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE--TTCHHHHHHH
T ss_pred             ecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeCcCCcHHHHHHH
Confidence            9988 45543333333333445767655554 3  3689999999999999988877777777778776

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown

Probab=97.66  E-value=0.00011  Score=58.43  Aligned_cols=137  Identities=8%  Similarity=0.038  Sum_probs=75.7

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcc--cCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEA--LDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~--~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      ...+|+..||||-.-.....++.....  -.||++...........+-++.+.-+.+..+..+++.+..-|+++..|++.
T Consensus       274 a~~~ga~~ViGPL~k~~V~~l~~~~~~~~~~vp~LaLN~~~~~~~~~~l~~f~LspEdEA~q~A~~a~~~g~~~alvl~p  353 (536)
T PF04348_consen  274 AVADGADFVIGPLLKSNVEALAQLPQLQAQPVPVLALNQPDNSQAPPNLYQFGLSPEDEARQAAQKAFQDGYRRALVLAP  353 (536)
T ss_dssp             HHHTT--EEE---SHHHHHHHHH-GG-GGTT-EEEES---TT----TTEEE----HHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred             HHHcCCCEEEcCCCHHHHHHHHhcCcccccCCceeeccCCCcccCccceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcC
Confidence            345799999999987776666664332  388999876422111122234444455668899999999999999999998


Q ss_pred             c-CcchhhHHHHHhCCCCCCceE-EEEecC-CCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065         87 E-DNGLFKLQELVKTPPTLKTEM-YIRHAN-PSTYRNVLREIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        87 ~-~~~~~~l~~l~~~~~~~~~~v-~~~~~~-~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      + ++|....+.|.+.....|..+ .+..++ ..|+...++.-.+...+.|++.++...++.|
T Consensus       354 ~~~~g~R~~~aF~~~W~~~gg~~~~~~~~~~~~~~~~~i~~r~r~d~D~ifl~a~~~~ar~i  415 (536)
T PF04348_consen  354 QNAWGQRMAEAFNQQWQALGGQVAEVSYYGSPADLQAAIQPRRRQDIDAIFLVANPEQARLI  415 (536)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHSS--EEEEESSTTHHHHHHHHS--TT--EEEE---HHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCCceeeEecCCHHHHHHHHhhcCCCCCCEEEEeCCHHHHHHH
Confidence            7 577777777877665544333 333344 3678888887667788999999988877654

; PDB: 3CKM_A.

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=97.58  E-value=0.002  Score=45.52  Aligned_cols=122  Identities=7%  Similarity=0.075  Sum_probs=76.2

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++++.............+...++|+|..+.....  ..++.+..+.+...+...++.+...+-++++++..+
T Consensus        50 ~~~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~  127 (264)
T cd01537          50 NLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPD--GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGP  127 (264)
T ss_pred             HHHHcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCCCC--CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            344567888887766554444566778889999998654321  133456777777788888898887889999999875


Q ss_pred             -C--cchhhHHHHHhCCCCCC-ceEE-EEecC--CCchHHHHHHHHhCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLK-TEMY-IRHAN--PSTYRNVLREIRQKEIF  131 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~-~~v~-~~~~~--~~d~~~~l~~i~~~~~~  131 (149)
                       +  .+..+.+.+.+.++..+ ..+. .....  ..+....+.++.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  178 (264)
T cd01537         128 LGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPD  178 (264)
T ss_pred             CCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCC
Confidence             3  33455566665544444 2221 11111  13456667777666643

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=97.47  E-value=0.0066  Score=43.66  Aligned_cols=129  Identities=14%  Similarity=0.049  Sum_probs=73.1

Q ss_pred             HHhhCCcEEE-EcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          8 RQLQNGVQAL-FGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~ai-iGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      .+.+.++.++ ++|..+.........+...++|+|..+.......   ...+.+.+...+...++.+...  |.++++++
T Consensus        52 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~---~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l  128 (275)
T cd06320          52 NMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDKLIPNA---TAFVGTDNKANGVRGAEWIIDKLAEGGKVAII  128 (275)
T ss_pred             HHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCCCCCcc---ceEEecCcHHHHHHHHHHHHHHhCCCceEEEE
Confidence            3445677774 5554433222333456678999998765322111   1234666666788888877554  89999998


Q ss_pred             eec-C--cchhhHHHHHhCCCCC-CceEEEEecC---CCchHHHHHHHHhCCCceEEEecCc
Q psy18065         85 YEE-D--NGLFKLQELVKTPPTL-KTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTST  139 (149)
Q Consensus        85 ~~~-~--~~~~~l~~l~~~~~~~-~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~  139 (149)
                      ... +  ....+.+.+.+.++++ |+.+......   ..+....++++.++..+.-.++|..
T Consensus       129 ~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~  190 (275)
T cd06320         129 EGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNN  190 (275)
T ss_pred             eCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECC
Confidence            753 2  2345666677766666 7655332221   1334556666655443443444443

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=97.45  E-value=0.0068  Score=43.53  Aligned_cols=137  Identities=8%  Similarity=-0.093  Sum_probs=81.0

Q ss_pred             HHhhCCcEEEEcCCCCCc-HHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          8 RQLQNGVQALFGPSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      ++..+++.+||....... ...+-..+...++|++........   +...++.+++...+..+++.+...  |-++++++
T Consensus        55 ~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i  131 (272)
T cd06300          55 NLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGTVTT---PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVLVV  131 (272)
T ss_pred             HHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecCCCC---CceeEecCCHHHHHHHHHHHHHHHcCCCceEEEE
Confidence            445668888888554322 233334566789999998643221   335678888888888888877554  78899999


Q ss_pred             eec-C--cchhhHHHHHhCCCCCC-ceEEEEecCC---CchHHHHHHHHhCCCceEEEecCchhHHHHHh
Q psy18065         85 YEE-D--NGLFKLQELVKTPPTLK-TEMYIRHANP---STYRNVLREIRQKEIFNLIIDTSTTHISQFFR  147 (149)
Q Consensus        85 ~~~-~--~~~~~l~~l~~~~~~~~-~~v~~~~~~~---~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~  147 (149)
                      ... +  .+..+.+.+.+.+.+++ +.+.......   .+..+.+.++.+++.+.-.++|..+.+..+++
T Consensus       132 ~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~A~g~~~  201 (272)
T cd06300         132 RGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEVYGDWDQAVAQKAVADFLASNPDVDGIWTQGGDAVGAVQ  201 (272)
T ss_pred             ECCCCCcchHHHHHHHHHHHHHCCCcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCEEEecCCCcHHHHH
Confidence            743 2  34566666776665555 5543221111   34566777776665443344443322444443

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=97.37  E-value=0.008  Score=42.50  Aligned_cols=121  Identities=11%  Similarity=-0.024  Sum_probs=75.5

Q ss_pred             HHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065          6 MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus         6 ~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      ...++..++.+++.......+.. ...+...++|+|..+.....   +....+.++....+...++.+...|.+++++++
T Consensus        48 ~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~  123 (264)
T cd06267          48 LELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDG---LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIG  123 (264)
T ss_pred             HHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccC---CCCCEEeeccHHHHHHHHHHHHHCCCceEEEec
Confidence            34555678888887666555555 55678899999998753322   233455666666777788877767999999998


Q ss_pred             ecC---cchhhHHHHHhCCCCCCceEE---EEec--CCCchHHHHHHHHhCCC
Q psy18065         86 EED---NGLFKLQELVKTPPTLKTEMY---IRHA--NPSTYRNVLREIRQKEI  130 (149)
Q Consensus        86 ~~~---~~~~~l~~l~~~~~~~~~~v~---~~~~--~~~d~~~~l~~i~~~~~  130 (149)
                      .+.   .+..+.+.+.+.+++.+..+.   ....  +..+....++++.++..
T Consensus       124 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  176 (264)
T cd06267         124 GPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGE  176 (264)
T ss_pred             CCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCC
Confidence            753   345566666665544442221   1111  12455667777766653

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily

Probab=97.28  E-value=0.022  Score=40.44  Aligned_cols=121  Identities=11%  Similarity=0.044  Sum_probs=72.3

Q ss_pred             HHhhCCcEEEEcCCCC-CcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          8 RQLQNGVQALFGPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s-~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      ++...++.++|+.... .........+...++|+|..+.....  ...+..+.+.+...+..+++.+...  |-++++++
T Consensus        50 ~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i  127 (267)
T cd01536          50 DLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDIDG--GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAII  127 (267)
T ss_pred             HHHHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCCCCc--cceeEEEecCHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            3445578888764333 22222444556789999997653321  1223456677666778888877665  88999999


Q ss_pred             eecC---cchhhHHHHHhCCCCC-CceEEEEecC---CCchHHHHHHHHhCCC
Q psy18065         85 YEED---NGLFKLQELVKTPPTL-KTEMYIRHAN---PSTYRNVLREIRQKEI  130 (149)
Q Consensus        85 ~~~~---~~~~~l~~l~~~~~~~-~~~v~~~~~~---~~d~~~~l~~i~~~~~  130 (149)
                      +..+   .+..+.+.+.+.+++. +.++......   ..+..+.+.++.+...
T Consensus       128 ~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (267)
T cd01536         128 EGPPGSSNAQERVKGFRDALKEYPDIEIVAVQDGNWDREKALQAMEDLLQANP  180 (267)
T ss_pred             EcccccchHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence            8652   3555666677766655 3554322221   1345667777765543

Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=96.92  E-value=0.023  Score=40.41  Aligned_cols=97  Identities=10%  Similarity=0.057  Sum_probs=60.4

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      ..+...++.++|..............+...++|++....... ...++   ....+...+...++.+...|.++++++..
T Consensus        49 ~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~-~~~~~---v~~d~~~~g~~~~~~l~~~g~~~i~~i~~  124 (266)
T cd06282          49 ETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQ-PGRPS---VSVDNRAAARDVAQALAALGHRRIAMLAG  124 (266)
T ss_pred             HHHHhcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEeccCC-CCCCE---EeeCcHHHHHHHHHHHHHcCcccEEEecc
Confidence            345566788888643322223345567788999988764332 22233   34555567788888887779999999964


Q ss_pred             c----CcchhhHHHHHhCCCCCCce
Q psy18065         87 E----DNGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        87 ~----~~~~~~l~~l~~~~~~~~~~  107 (149)
                      +    +.+..+.+.+.+.++++|+.
T Consensus       125 ~~~~~~~~~~r~~gf~~~l~~~~~~  149 (266)
T cd06282         125 RLAASDRARQRYAGYRAAMRAAGLA  149 (266)
T ss_pred             ccccCchHHHHHHHHHHHHHHcCCC
Confidence            2    23455666677666555553

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators

Probab=96.41  E-value=0.19  Score=35.83  Aligned_cols=95  Identities=9%  Similarity=0.017  Sum_probs=57.0

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+.++.+++--..... ......+...++|++..+........++   ....+...+..+++.+...|.++++++...
T Consensus        50 ~l~~~~vdgiii~~~~~~-~~~~~~l~~~~iPvv~~~~~~~~~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~  125 (268)
T cd06273          50 KLLERGVDGLALIGLDHS-PALLDLLARRGVPYVATWNYSPDSPYPC---VGFDNREAGRLAARHLIALGHRRIAMIFGP  125 (268)
T ss_pred             HHHhcCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEEcCCCCCCCCCE---EEeChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            455566766553212222 2334456778999999764222122232   445666678888887766799999999743


Q ss_pred             --C--cchhhHHHHHhCCCCCCc
Q psy18065         88 --D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 --~--~~~~~l~~l~~~~~~~~~  106 (149)
                        +  .+..+.+.+.+.+.++++
T Consensus       126 ~~~~~~~~~r~~gf~~~l~~~~~  148 (268)
T cd06273         126 TQGNDRARARRAGVRAALAEAGL  148 (268)
T ss_pred             ccCCccHHHHHHHHHHHHHHcCC
Confidence              2  244666777776665554

This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions

Probab=96.30  E-value=0.12  Score=37.13  Aligned_cols=122  Identities=11%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CCCC------C--cccEEEecCChhHHHHHHHHHHHhc--
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LELN------S--KEFSVNLYPSQKLLNAAFKDVIRFL--   76 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~~~------~--~~~~~~~~p~~~~~~~ai~~ll~~~--   76 (149)
                      .+...++.++|+..++ .....  .....++|+|..+.. +...      .  ..+.+  ...+.......++++...  
T Consensus        55 ~l~~~~vd~iI~~~~~-~~~~~--~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~  129 (281)
T cd06325          55 KFVADKPDLIVAIATP-AAQAA--ANATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVT--GVSDLVPVETQLELLKKLLP  129 (281)
T ss_pred             HHHhcCCCEEEEcCcH-HHHHH--HHcCCCCCEEEEecCCccccccccccccCCCcee--CeecccchHHHHHHHHHHCC
Confidence            3445678888885433 22222  255678999987632 1110      0  11222  222333556677777654  


Q ss_pred             CCcEEEEEeec-C-cchhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEE
Q psy18065         77 NWTKVAIVYEE-D-NGLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLII  135 (149)
Q Consensus        77 ~W~~v~vi~~~-~-~~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil  135 (149)
                      |.+++++++++ + .+..+.+.+.+.+++.|+.+...... ..++.+.++++... .+.|++
T Consensus       130 g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~dai~~  190 (281)
T cd06325         130 DAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGK-VDAIYV  190 (281)
T ss_pred             CCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhccc-CCEEEE
Confidence            99999999865 2 45566777777776677765432222 24566777777654 355444

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.

>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=96.25  E-value=0.24  Score=35.51  Aligned_cols=98  Identities=10%  Similarity=0.165  Sum_probs=57.3

Q ss_pred             HhhCCcEEE-EcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc------CCcEE
Q psy18065          9 QLQNGVQAL-FGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL------NWTKV   81 (149)
Q Consensus         9 ~~~~~v~ai-iGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~------~W~~v   81 (149)
                      ++..++.++ ++|..+......-..+...++|.|.......  ...+...+.+.+...+...++++...      |-+++
T Consensus        51 ~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~--~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i  128 (277)
T cd06319          51 AIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIGAE--GGDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKV  128 (277)
T ss_pred             HHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEecCCC--CCceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence            445667777 5665544333444567778999998764321  11223345555554555566544322      56899


Q ss_pred             EEEeec---CcchhhHHHHHhCCCCCCceE
Q psy18065         82 AIVYEE---DNGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        82 ~vi~~~---~~~~~~l~~l~~~~~~~~~~v  108 (149)
                      +++...   ..+..+.+.+.+.+++.|+.+
T Consensus       129 ~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~  158 (277)
T cd06319         129 GMVAIPQKRKNGQKRTKGFKEAMKEAGCDL  158 (277)
T ss_pred             EEEeccCCCccHHHHHHHHHHHHHhcCCce
Confidence            998743   235667777777766666543

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=96.22  E-value=0.26  Score=35.12  Aligned_cols=99  Identities=9%  Similarity=0.058  Sum_probs=59.2

Q ss_pred             HHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEE
Q psy18065          6 MCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIV   84 (149)
Q Consensus         6 ~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi   84 (149)
                      ..+.+ ..++.++|..............+...++|++..+........++   +.......+...++.+...|.++++++
T Consensus        48 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~~~~~~~~~---V~~d~~~~g~~a~~~l~~~g~~~i~~i  124 (270)
T cd01545          48 VRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPDPDSPC---VRIDDRAAAREMTRHLIDLGHRRIAFI  124 (270)
T ss_pred             HHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecCCCCCCCCe---EEeccHHHHHHHHHHHHHCCCceEEEE
Confidence            34434 56788888754432233444556778999998865322122222   344555567777787766799999999


Q ss_pred             eec-Cc--chhhHHHHHhCCCCCCce
Q psy18065         85 YEE-DN--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        85 ~~~-~~--~~~~l~~l~~~~~~~~~~  107 (149)
                      ..+ +.  ...+.+.+.+.+.+.|..
T Consensus       125 ~~~~~~~~~~~R~~Gf~~~~~~~~~~  150 (270)
T cd01545         125 AGPPDHRASAERLEGYRDALAEAGLP  150 (270)
T ss_pred             eCCCCchhHHHHHHHHHHHHHHcCCC
Confidence            754 22  234556666655444543

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=95.87  E-value=0.4  Score=34.05  Aligned_cols=98  Identities=10%  Similarity=0.055  Sum_probs=57.1

Q ss_pred             HhhCCcEE-EEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEEe
Q psy18065          9 QLQNGVQA-LFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIVY   85 (149)
Q Consensus         9 ~~~~~v~a-iiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi~   85 (149)
                      +..+++.+ |+++..+......-..+...++|.+....... .. ..+-.+...+...+..+++.+...  |-+++++++
T Consensus        51 ~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~~~-~~-~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~  128 (268)
T cd06323          51 LITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDREAN-GG-EVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQ  128 (268)
T ss_pred             HHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccCCC-CC-ceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            44556777 55554433222333335567999999864321 11 222345555555677778877655  779999997


Q ss_pred             ec-C--cchhhHHHHHhCCCCC-CceE
Q psy18065         86 EE-D--NGLFKLQELVKTPPTL-KTEM  108 (149)
Q Consensus        86 ~~-~--~~~~~l~~l~~~~~~~-~~~v  108 (149)
                      .+ +  .+..+.+.+.+.++.+ |..+
T Consensus       129 ~~~~~~~~~~r~~g~~~~l~~~~~~~~  155 (268)
T cd06323         129 GIPGASAARERGKGFHEVVDKYPGLKV  155 (268)
T ss_pred             CCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence            64 2  3455666666665553 5554

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=95.64  E-value=0.41  Score=33.95  Aligned_cols=96  Identities=9%  Similarity=0.037  Sum_probs=59.9

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.+++--.+...... -..+...++|.|..+.......   ...+.+.....+..+++.+...|-++++++..+
T Consensus        49 ~~~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvV~~~~~~~~~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~  124 (266)
T cd06278          49 QLLQYRVDGVIVTSGTLSSEL-AEECRRNGIPVVLINRYVDGPG---VDAVCSDNYEAGRLAAELLLAKGCRRIAFIGGP  124 (266)
T ss_pred             HHHHcCCCEEEEecCCCCHHH-HHHHhhcCCCEEEECCccCCCC---CCEEEEChHHHHHHHHHHHHHCCCceEEEEcCC
Confidence            445667877775433333333 3445667999999865332222   234666777778888888877788999999764


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.++..+..
T Consensus       125 ~~~~~~~~R~~gf~~~~~~~~~~  147 (266)
T cd06278         125 ADTSTSRERERGFRDALAAAGVP  147 (266)
T ss_pred             CcccchHHHHHHHHHHHHHcCCC
Confidence             2  2345666666665555544

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems

Probab=95.63  E-value=0.53  Score=33.72  Aligned_cols=97  Identities=7%  Similarity=-0.000  Sum_probs=59.5

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCC-CCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAI   83 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~v   83 (149)
                      .++.+++.++| .|.........-..+...++|++.+..... .....+..++.+.+...+...++.+...  |-+++++
T Consensus        50 ~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~  129 (273)
T cd06309          50 SFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKATGGKGNIVE  129 (273)
T ss_pred             HHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHHcCCCceEEE
Confidence            44455666664 344333222333446678999999875321 1123455677888877888888877555  8889999


Q ss_pred             Eeec-C--cchhhHHHHHhCCCCC
Q psy18065         84 VYEE-D--NGLFKLQELVKTPPTL  104 (149)
Q Consensus        84 i~~~-~--~~~~~l~~l~~~~~~~  104 (149)
                      +..+ +  ....+.+.+.+.++.+
T Consensus       130 i~~~~~~~~~~~R~~Gf~~~l~~~  153 (273)
T cd06309         130 LQGTVGSSVAIDRKKGFAEVIKKY  153 (273)
T ss_pred             EeCCCCCchHHHHHHHHHHHHHHC
Confidence            9754 2  2345566666665554

Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=95.60  E-value=0.53  Score=33.57  Aligned_cols=97  Identities=9%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEE-ecCChhHHHHHHHHHH-Hhc-CCcEEEEE
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVN-LYPSQKLLNAAFKDVI-RFL-NWTKVAIV   84 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~-~~p~~~~~~~ai~~ll-~~~-~W~~v~vi   84 (149)
                      +...++.+++. +............+...++|+|..+........++... ..+.+...+...++.+ +++ |-++++++
T Consensus        52 l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l  131 (275)
T cd06317          52 LIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSNISEKGFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVI  131 (275)
T ss_pred             HHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCCCCCCccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEE
Confidence            44567777744 43333323333446778999998765332222233222 2344445566666655 443 67899999


Q ss_pred             eec-Cc--chhhHHHHHhCCCCCC
Q psy18065         85 YEE-DN--GLFKLQELVKTPPTLK  105 (149)
Q Consensus        85 ~~~-~~--~~~~l~~l~~~~~~~~  105 (149)
                      ... +.  +..+.+.+.+.+++.|
T Consensus       132 ~~~~~~~~~~~r~~g~~~~~~~~~  155 (275)
T cd06317         132 AGQPGNGTAIERQKGFEDELAEVC  155 (275)
T ss_pred             ecCCCCchHHHHHHHHHHHHHhhC
Confidence            753 32  3455666666665554

Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=95.01  E-value=0.84  Score=32.40  Aligned_cols=135  Identities=10%  Similarity=0.007  Sum_probs=73.5

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      ..+.+.++.+++-..+... ..+...+...++|+|..+........+   .+.+.+...+...++.+...|=++++++..
T Consensus        49 ~~l~~~~vdgiii~~~~~~-~~~~~~l~~~~ipvV~~~~~~~~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~  124 (268)
T cd06298          49 NNLLAKQVDGIIFMGGKIS-EEHREEFKRSPTPVVLAGSVDEDNELP---SVNIDYKKAAFEATELLIKNGHKKIAFISG  124 (268)
T ss_pred             HHHHHhcCCEEEEeCCCCc-HHHHHHHhcCCCCEEEEccccCCCCCC---EEEECcHHHHHHHHHHHHHcCCceEEEEeC
Confidence            4555667877774222222 233444566799999986432212222   345666667777888777678899999975


Q ss_pred             c-C---cchhhHHHHHhCCCCCCceEE---EEec--CCCchHHHHHHHHhCC-CceEEEecCchhHHHHH
Q psy18065         87 E-D---NGLFKLQELVKTPPTLKTEMY---IRHA--NPSTYRNVLREIRQKE-IFNLIIDTSTTHISQFF  146 (149)
Q Consensus        87 ~-~---~~~~~l~~l~~~~~~~~~~v~---~~~~--~~~d~~~~l~~i~~~~-~~~iil~~~~~~~~~il  146 (149)
                      + +   .+..+.+.+.+.++++|+.+.   ....  +.....+.+..+.+++ .+.|+.. +...+..++
T Consensus       125 ~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-~d~~a~~~~  193 (268)
T cd06298         125 PLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFVT-DDELAIGIL  193 (268)
T ss_pred             CcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEEc-CcHHHHHHH
Confidence            3 2   345666666666655554321   1111  1122344555665544 4555543 333333333

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=94.98  E-value=0.89  Score=32.54  Aligned_cols=99  Identities=6%  Similarity=-0.149  Sum_probs=61.7

Q ss_pred             HhhCCcEEEEcCCCC-CcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHh-cCCcEEEEEe
Q psy18065          9 QLQNGVQALFGPSDA-LLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRF-LNWTKVAIVY   85 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s-~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~~v~vi~   85 (149)
                      +...++.++|.-... .........+...++|++........ ...+....+...+...+..+++.+.. -|-++++++.
T Consensus        53 l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~i~~i~  132 (271)
T cd06312          53 AIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAELKGGKNVLCVI  132 (271)
T ss_pred             HHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            445677777763332 21222223345678999998643221 11233456777777888889998877 7999999886


Q ss_pred             ec-C--cchhhHHHHHhCCCCCCce
Q psy18065         86 EE-D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        86 ~~-~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      .+ +  .+..+.+.+.+.++.+++.
T Consensus       133 g~~~~~~~~~r~~g~~~~~~~~~~~  157 (271)
T cd06312         133 HEPGNVTLEDRCAGFADGLGGAGIT  157 (271)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcCce
Confidence            43 2  2456777777766665654

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=94.95  E-value=0.9  Score=32.41  Aligned_cols=96  Identities=13%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             HhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHH-hc-CCcEEEEEe
Q psy18065          9 QLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR-FL-NWTKVAIVY   85 (149)
Q Consensus         9 ~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~-~~-~W~~v~vi~   85 (149)
                      +++.++.++| .|..+.....+...+...++|+|..+...... ...+..+...+...+...++.+. ++ +=++++++.
T Consensus        52 l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~~~~~-~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~  130 (272)
T cd06301          52 FIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRRPENA-PKGVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILM  130 (272)
T ss_pred             HHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCCCCCC-CCeeEEEecChHHHHHHHHHHHHHHhCCCccEEEEE
Confidence            3455777775 55554333344455688899999876432211 12234566676667777777664 43 456899986


Q ss_pred             ec-C--cchhhHHHHHhCCCCCC
Q psy18065         86 EE-D--NGLFKLQELVKTPPTLK  105 (149)
Q Consensus        86 ~~-~--~~~~~l~~l~~~~~~~~  105 (149)
                      .. +  ....+.+.+.+.+...+
T Consensus       131 ~~~~~~~~~~R~~gf~~~l~~~~  153 (272)
T cd06301         131 GPLGQSAQIDRTKGVEEVLAKYP  153 (272)
T ss_pred             CCCCCccHHHHHHHHHHHHHHCC
Confidence            54 2  23456666666655555

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=94.89  E-value=0.89  Score=32.42  Aligned_cols=95  Identities=11%  Similarity=-0.092  Sum_probs=55.3

Q ss_pred             HHhhCCcEEEEcCC-CCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh--cCCcEEEEE
Q psy18065          8 RQLQNGVQALFGPS-DALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF--LNWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiGp~-~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~--~~W~~v~vi   84 (149)
                      .++..++.++|... ++.....+-..+...++|.+........   +.+..+.+.+...++..++.+..  -|.++++++
T Consensus        50 ~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i  126 (273)
T cd06305          50 QAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVDSDN---PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYV  126 (273)
T ss_pred             HHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCCCCC---CccceeeechHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            34556788887743 3332233334467789999997653321   22234666666777777776654  589999998


Q ss_pred             eecC--cchhhHHHHHhCCCCCC
Q psy18065         85 YEED--NGLFKLQELVKTPPTLK  105 (149)
Q Consensus        85 ~~~~--~~~~~l~~l~~~~~~~~  105 (149)
                      ...+  ....+.+.+.+..++.+
T Consensus       127 ~~~~~~~~~~R~~g~~~~~~~~~  149 (273)
T cd06305         127 NVAGFPPLDRRYDVWQAVLKAYP  149 (273)
T ss_pred             EccCCchHHHHHHHHHHHHHHCC
Confidence            7532  23344444444444444

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=94.54  E-value=1.1  Score=31.67  Aligned_cols=94  Identities=9%  Similarity=-0.060  Sum_probs=55.4

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|............ .. ..++|.+..+.....   +....+.......+...++.+..-|.++++++...
T Consensus        50 ~~~~~~vdgiii~~~~~~~~~~~-~~-~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~  124 (267)
T cd06284          50 LLRRKQADGIILLDGSLPPTALT-AL-AKLPPIVQACEYIPG---LAVPSVSIDNVAAARLAVDHLISLGHRRIALITGP  124 (267)
T ss_pred             HHHHcCCCEEEEecCCCCHHHHH-HH-hcCCCEEEEecccCC---CCcceEEecccHHHHHHHHHHHHcCCceEEEEcCC
Confidence            44556788877643322222222 23 349999987532211   11223455555677778887766799999999764


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  .+..+.+.+.+.++.+++
T Consensus       125 ~~~~~~~~r~~gf~~~~~~~~~  146 (267)
T cd06284         125 RDNPLARDRLEGYRQALAEAGL  146 (267)
T ss_pred             ccchhHHHHHHHHHHHHHHcCC
Confidence             2  345566667666555553

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional

Probab=94.50  E-value=1.4  Score=32.68  Aligned_cols=96  Identities=10%  Similarity=0.086  Sum_probs=56.7

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.+||--.........-..+...++|.|..+........+   .+.+.....+...++.|...|.++++++... 
T Consensus       116 l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~  192 (342)
T PRK10014        116 LLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASRASYLDDVD---TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQS  192 (342)
T ss_pred             HHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEecCCCCCCCC---EEEeCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence            445567766642222222333445567799999876432212222   2455555667777888877899999998643 


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      +  ....+.+.+.+.+++.|+.
T Consensus       193 ~~~~~~~R~~Gf~~al~~~g~~  214 (342)
T PRK10014        193 SSLTRAERVGGYCATLLKFGLP  214 (342)
T ss_pred             ccccHHHHHHHHHHHHHHcCCC
Confidence            2  2245666677666555654

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=94.23  E-value=1.5  Score=31.90  Aligned_cols=129  Identities=11%  Similarity=0.032  Sum_probs=67.7

Q ss_pred             HHHhhCCcE-EEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHH-HhcCCc-EEEE
Q psy18065          7 CRQLQNGVQ-ALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWT-KVAI   83 (149)
Q Consensus         7 c~~~~~~v~-aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~-~v~v   83 (149)
                      ..+...++. .|++|..+.........+...++|++.......  .......+.+.+...+..+++.+ +..+.+ ++.+
T Consensus        76 ~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~--~~~~~~~V~~D~~~~g~~~~~~l~~~~~~~~~i~~  153 (295)
T PRK10653         76 QDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRGAT--KGEVVSHIASDNVAGGKMAGDFIAKKLGEGAKVIQ  153 (295)
T ss_pred             HHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEccCCC--CCceeeEEccChHHHHHHHHHHHHHHhCCCceEEE
Confidence            344455665 455655433323344556678999999864221  11223456666666667777766 445654 5555


Q ss_pred             Eeec-C--cchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHHHhCCCceEEEec
Q psy18065         84 VYEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREIRQKEIFNLIIDT  137 (149)
Q Consensus        84 i~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i~~~~~~~iil~~  137 (149)
                      +..+ +  ....+.+.+.+.+++.|..+.......   .+..+.+.++.++..+.-.+.|
T Consensus       154 ~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~  213 (295)
T PRK10653        154 LEGIAGTSAARERGEGFKQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFA  213 (295)
T ss_pred             EEccCCCccHHHHHHHHHHHHhhCCCEEEEecCCCCCHHHHHHHHHHHHHhCCCcCEEEE
Confidence            5432 2  234666777777766776543222211   1234445566554433333333

>TIGR01481 ccpA catabolite control protein A

Probab=94.16  E-value=1.7  Score=32.12  Aligned_cols=135  Identities=10%  Similarity=0.014  Sum_probs=71.6

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+.++.++|--... ....+.......++|++..+........+   .+.+.+..-+..+++.+...|.++++++...
T Consensus       110 ~l~~~~vdGiIi~~~~-~~~~~~~~l~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~  185 (329)
T TIGR01481       110 TLLSKQVDGIIFMGGT-ITEKLREEFSRSPVPVVLAGTVDKENELP---SVNIDYKQATKEAVGELIAKGHKSIAFVGGP  185 (329)
T ss_pred             HHHhCCCCEEEEeCCC-CChHHHHHHHhcCCCEEEEecCCCCCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            3445667766631111 12233344566789999876422112222   3455555566777777777799999999642


Q ss_pred             -C---cchhhHHHHHhCCCCCCceEE---EE--ecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHh
Q psy18065         88 -D---NGLFKLQELVKTPPTLKTEMY---IR--HANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFR  147 (149)
Q Consensus        88 -~---~~~~~l~~l~~~~~~~~~~v~---~~--~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~  147 (149)
                       .   .+..+.+.+.+.+++.|+.+.   +.  ..+..+-...++++.+..++.|+. ++...+..+++
T Consensus       186 ~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~-~~d~~A~g~~~  253 (329)
T TIGR01481       186 LSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFV-ASDEMAAGILN  253 (329)
T ss_pred             cccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHH
Confidence             1   235677777776655564322   11  111123345566665555555544 34444444433

Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=94.01  E-value=1.5  Score=31.11  Aligned_cols=98  Identities=8%  Similarity=-0.002  Sum_probs=56.1

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.+|+=.........+..+....++|++..+........++   +.......+...++.+...|-++++++...
T Consensus        50 ~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~~~~~~~~~---V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~  126 (269)
T cd06275          50 MLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPEDDFADK---IQDNSEEGGYLATRHLIELGHRRIGCITGP  126 (269)
T ss_pred             HHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecccCCCCCCe---EeeCcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence            44455666555333322333333444456899998875432222222   445555567777787777799999998753


Q ss_pred             -C--cchhhHHHHHhCCCCCCceE
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~v  108 (149)
                       +  ....+.+.+.+.++++++.+
T Consensus       127 ~~~~~~~~r~~gf~~~~~~~~~~~  150 (269)
T cd06275         127 LEKAPAQQRLAGFRRAMAEAGLPV  150 (269)
T ss_pred             CCCccHHHHHHHHHHHHHHcCCCC
Confidence             2  23456666666665555443

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=93.95  E-value=1.6  Score=30.97  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=56.5

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+..+++.+++..............+...++|.|............   .+.++....+...++.+...|-++++++..+
T Consensus        50 ~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~  126 (268)
T cd06289          50 TMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAGAPFD---YVGPDNAAGARLATEHLISLGHRRIAFIGGL  126 (268)
T ss_pred             HHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCCCCCC---EEeecchHHHHHHHHHHHHCCCCCEEEecCC
Confidence            4456678888775543333234445677899999876432211222   3445555567777777766688999988653


Q ss_pred             -C--cchhhHHHHHhCCCCCC
Q psy18065         88 -D--NGLFKLQELVKTPPTLK  105 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~  105 (149)
                       +  ....+.+.+.+.++..+
T Consensus       127 ~~~~~~~~r~~gf~~~l~~~~  147 (268)
T cd06289         127 EDSSTRRERLAGYRAALAEAG  147 (268)
T ss_pred             ccccchHHHHHHHHHHHHHcC
Confidence             2  23455566665554444

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=93.90  E-value=1.6  Score=31.08  Aligned_cols=138  Identities=8%  Similarity=-0.017  Sum_probs=71.4

Q ss_pred             HHHHhhCCcEEEEcCCCCCc--HHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEE
Q psy18065          6 MCRQLQNGVQALFGPSDALL--GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKV   81 (149)
Q Consensus         6 ~c~~~~~~v~aiiGp~~s~~--~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v   81 (149)
                      ...+...++.++|--.....  ...++. +...++|.|........ ... ...+.+.+...+...++.+...  |.+++
T Consensus        50 i~~l~~~~vdgvii~~~~~~~~~~~l~~-~~~~~ipvV~~~~~~~~-~~~-~~~v~~d~~~~~~~~~~~l~~~~~g~~~i  126 (273)
T cd06310          50 LENAIARGPDAILLAPTDAKALVPPLKE-AKDAGIPVVLIDSGLNS-DIA-VSFVATDNVAAGKLAAEALAELLGKKGKV  126 (273)
T ss_pred             HHHHHHhCCCEEEEcCCChhhhHHHHHH-HHHCCCCEEEecCCCCC-Ccc-eEEEeeChHHHHHHHHHHHHHHcCCCceE
Confidence            44556667777775332222  223333 45689999997643221 112 2234555555677778777555  89999


Q ss_pred             EEEeec-Cc--chhhHHHHHhCCCCC-CceEEEEecCC---CchHHHHHHHHhCCCceEEEec-CchhHHHHH
Q psy18065         82 AIVYEE-DN--GLFKLQELVKTPPTL-KTEMYIRHANP---STYRNVLREIRQKEIFNLIIDT-STTHISQFF  146 (149)
Q Consensus        82 ~vi~~~-~~--~~~~l~~l~~~~~~~-~~~v~~~~~~~---~d~~~~l~~i~~~~~~~iil~~-~~~~~~~il  146 (149)
                      +++... +.  ...+.+.+.+.++.. |+.+.......   .+-.+.+.++.++..+.-.++| +...+..++
T Consensus       127 ~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~  199 (273)
T cd06310         127 AVISFVPGSSTTDQREEGFLEGLKEYPGIEIVATQYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAA  199 (273)
T ss_pred             EEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHH
Confidence            999643 32  345666666665555 55432211111   2234455555444333333444 334444343

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=93.74  E-value=1.8  Score=31.09  Aligned_cols=97  Identities=10%  Similarity=0.008  Sum_probs=57.0

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEEe
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIVY   85 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi~   85 (149)
                      ++.+++.+||= |..+.....+-..+...+||++...........+......+.+...+...++.+...  |.++++++.
T Consensus        51 ~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~  130 (272)
T cd06313          51 MASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLIAPLQINVHSFLAPDNYFMGASVAQALCNAMGGKGKIAMLQ  130 (272)
T ss_pred             HHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCCCCCCCceEEEECCCcHHHHHHHHHHHHHHcCCCceEEEEE
Confidence            44566665554 333222222223345569999998653221111223346677777788888877555  889999997


Q ss_pred             ec-C--cchhhHHHHHhCCCCCC
Q psy18065         86 EE-D--NGLFKLQELVKTPPTLK  105 (149)
Q Consensus        86 ~~-~--~~~~~l~~l~~~~~~~~  105 (149)
                      .+ +  ....+.+.+.+.+++++
T Consensus       131 g~~~~~~~~~R~~gf~~~~~~~~  153 (272)
T cd06313         131 GALGHTGAQGRAQGFNDVIKKYP  153 (272)
T ss_pred             CCCCCcchhHHHHHHHHHHHhCC
Confidence            54 2  23456777777766554

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=93.56  E-value=1.4  Score=31.21  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHH-hcCC-cEEEEE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR-FLNW-TKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~-~~~W-~~v~vi   84 (149)
                      .++.+++.+|| .|..+......-.-+...+||++++... .....+....+.++....+..+.+.+. ..+= .+++++
T Consensus        50 ~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~-~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~  128 (257)
T PF13407_consen   50 QAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD-EAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLIL  128 (257)
T ss_dssp             HHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST-HHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred             HHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc-ccccccceeeeeccHHHHHHHHHHHHHHHhccCceEEec
Confidence            45566777666 6666655555555678889999997654 111223345667777788888888774 3333 566666


Q ss_pred             eec-Cc--chhhHHHHHhCCCCC-CceEEEEecC-C---CchHHHHHHHHhCCCceEEEecCchh
Q psy18065         85 YEE-DN--GLFKLQELVKTPPTL-KTEMYIRHAN-P---STYRNVLREIRQKEIFNLIIDTSTTH  141 (149)
Q Consensus        85 ~~~-~~--~~~~l~~l~~~~~~~-~~~v~~~~~~-~---~d~~~~l~~i~~~~~~~iil~~~~~~  141 (149)
                      ... +.  ...+.+.+.+.+++. ++.+.-.... .   ++....+.++.+.+.-..|+.++...
T Consensus       129 ~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~  193 (257)
T PF13407_consen  129 SGSPGNPNTQERLEGFRDALKEYPGVEIVDEYEYTDWDPEDARQAIENLLQANPVDAIIACNDGM  193 (257)
T ss_dssp             ESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEEEESSHHH
T ss_pred             cCCCCchHHHHHHHHHHHHHhhcceeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEEEeCCChH
Confidence            443 32  234566665554443 4443322111 1   33444444444444323334444443

...

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators

Probab=93.05  E-value=1.9  Score=31.54  Aligned_cols=133  Identities=9%  Similarity=0.004  Sum_probs=79.6

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCC-CcccEEEecCChhHHHHHHHHHHHhcCCcE-EEEEee
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELN-SKEFSVNLYPSQKLLNAAFKDVIRFLNWTK-VAIVYE   86 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~-~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~-v~vi~~   86 (149)
                      +.+.+|.++|=-........+..+.+. ++|+|..+...... ..++   +...+..-+....+.|...|-++ ++++..
T Consensus        52 l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~~~~~~~~---V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~  127 (279)
T PF00532_consen   52 LLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRYIDNPEGVPS---VYIDNYEAGYEATEYLIKKGHRRPIAFIGG  127 (279)
T ss_dssp             HHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SCTTCTSCE---EEEEHHHHHHHHHHHHHHTTCCSTEEEEEE
T ss_pred             HHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEeccCCcccCCE---EEEcchHHHHHHHHHHHhcccCCeEEEEec
Confidence            445566666654333334677777777 99999977543322 3343   23445556667777888889999 999887


Q ss_pred             cC-c--chhhHHHHHhCCCCCCceEEEEec--CC---CchHHHHHHHHhCCCc-eEEEecCchhHHHH
Q psy18065         87 ED-N--GLFKLQELVKTPPTLKTEMYIRHA--NP---STYRNVLREIRQKEIF-NLIIDTSTTHISQF  145 (149)
Q Consensus        87 ~~-~--~~~~l~~l~~~~~~~~~~v~~~~~--~~---~d~~~~l~~i~~~~~~-~iil~~~~~~~~~i  145 (149)
                      .. .  ...+.+.+.+.+++.|+++....+  ..   ++-.+.++++.+..+. -.|+.++...+.-.
T Consensus       128 ~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga  195 (279)
T PF00532_consen  128 PEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGA  195 (279)
T ss_dssp             STTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHH
Confidence            63 2  456777788877778876544332  11   2234556666665544 14444454444443

The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.97  E-value=2.4  Score=30.12  Aligned_cols=98  Identities=9%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             HHhhCCcEEEEc-CCCCCc-HHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEE
Q psy18065          8 RQLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAI   83 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~v   83 (149)
                      .+++.++.++|- |..... ...+.. +...++|+|.......  .......+.+.....+...++.+...  |-+++++
T Consensus        50 ~~~~~~vdgiii~~~~~~~~~~~~~~-~~~~~ipvV~~~~~~~--~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~  126 (267)
T cd06322          50 DFITKKVDAIVLSPVDSKGIRAAIAK-AKKAGIPVITVDIAAE--GVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAI  126 (267)
T ss_pred             HHHHcCCCEEEEcCCChhhhHHHHHH-HHHCCCCEEEEcccCC--CCceEEEEecChHHHHHHHHHHHHHHhCCCceEEE
Confidence            344567777765 443332 233333 5568999999864321  11222346666666666677766543  7789999


Q ss_pred             EeecC--cchhhHHHHHhCCCCC-CceE
Q psy18065         84 VYEED--NGLFKLQELVKTPPTL-KTEM  108 (149)
Q Consensus        84 i~~~~--~~~~~l~~l~~~~~~~-~~~v  108 (149)
                      ++..+  ....+.+.+.+.+++. |+.+
T Consensus       127 i~~~~~~~~~~R~~gf~~~~~~~~~~~~  154 (267)
T cd06322         127 IDYPTVQSVVDRVRGFKEALADYPNIKI  154 (267)
T ss_pred             EecCCCccHHHHHHHHHHHHHhCCCcEE
Confidence            97532  2345666677666555 6654

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=92.62  E-value=2.7  Score=29.86  Aligned_cols=94  Identities=6%  Similarity=-0.006  Sum_probs=56.5

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      .+.+.++.+++ .+.... ...+ ..+...++|++........ ...+   .+.+.....+....+.+...|+++++++.
T Consensus        50 ~l~~~~~dgiii~~~~~~-~~~~-~~~~~~~ipvV~i~~~~~~~~~~~---~v~~d~~~~~~~a~~~l~~~g~~~i~~i~  124 (270)
T cd06296          50 RLSARRTDGVILVTPELT-SAQR-AALRRTGIPFVVVDPAGDPDADVP---SVGATNWAGGLAATEHLLELGHRRIGFIT  124 (270)
T ss_pred             HHHHcCCCEEEEecCCCC-hHHH-HHHhcCCCCEEEEecccCCCCCCC---EEEeCcHHHHHHHHHHHHHcCCCcEEEEc
Confidence            44566777765 333322 2333 4456789999998753211 2222   35666666777777777667999999986


Q ss_pred             ec-C--cchhhHHHHHhCCCCCCc
Q psy18065         86 EE-D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        86 ~~-~--~~~~~l~~l~~~~~~~~~  106 (149)
                      .. .  ....+.+.+.+..++.+.
T Consensus       125 ~~~~~~~~~~r~~gf~~~~~~~~~  148 (270)
T cd06296         125 GPPDLLCSRARLDGYRAALAEAGI  148 (270)
T ss_pred             CCCcchhHHHHHHHHHHHHHHcCC
Confidence            54 2  234556666666554443

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=92.56  E-value=0.76  Score=33.05  Aligned_cols=81  Identities=7%  Similarity=-0.018  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEE-ec-----------CCCchHHHHHHHHhCCCce
Q psy18065         65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR-HA-----------NPSTYRNVLREIRQKEIFN  132 (149)
Q Consensus        65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~-~~-----------~~~d~~~~l~~i~~~~~~~  132 (149)
                      -..|+++-++++|-++++++..  |-...-+.+.+.+++.|+.+... .+           ++....+.++++...+++.
T Consensus       107 ~~~A~~~AL~alg~~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDA  184 (239)
T TIGR02990       107 PSSAAVDGLAALGVRRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADA  184 (239)
T ss_pred             HHHHHHHHHHHcCCCEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCE
Confidence            5678999999999999999965  21122233333344456655322 12           2234556666666788999


Q ss_pred             EEEecCchhHHHHHh
Q psy18065        133 LIIDTSTTHISQFFR  147 (149)
Q Consensus       133 iil~~~~~~~~~il~  147 (149)
                      |++.|..-.+..++.
T Consensus       185 ifisCTnLrt~~vi~  199 (239)
T TIGR02990       185 LFLSCTALRAATCAQ  199 (239)
T ss_pred             EEEeCCCchhHHHHH
Confidence            999998766666554

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators

Probab=92.15  E-value=3.1  Score=29.44  Aligned_cols=91  Identities=8%  Similarity=-0.008  Sum_probs=54.5

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C--
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D--   88 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~--   88 (149)
                      .++.++|..........+ ..+...++|++..+........++   +.+.+...+...++.+...|-++++++... .  
T Consensus        58 ~~vdgiii~~~~~~~~~~-~~~~~~~ipvV~~~~~~~~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~  133 (268)
T cd06271          58 GLVDGVIISRTRPDDPRV-ALLLERGFPFVTHGRTELGDPHPW---VDFDNEAAAYQAVRRLIALGHRRIALLNPPEDLT  133 (268)
T ss_pred             CCCCEEEEecCCCCChHH-HHHHhcCCCEEEECCcCCCCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEecCccccc
Confidence            457777764333222233 345668999998764322222233   345555566777777766799999999754 2  


Q ss_pred             cchhhHHHHHhCCCCCCc
Q psy18065         89 NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        89 ~~~~~l~~l~~~~~~~~~  106 (149)
                      .+..+.+.+.+.+++++.
T Consensus       134 ~~~~R~~gf~~~~~~~~~  151 (268)
T cd06271         134 FAQHRRAGYRRALAEAGL  151 (268)
T ss_pred             hHHHHHHHHHHHHHHhCC
Confidence            244566777766655554

Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=91.95  E-value=3.4  Score=29.52  Aligned_cols=98  Identities=6%  Similarity=-0.017  Sum_probs=56.1

Q ss_pred             HhhCCcEEEEc-CCCCCc-HHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          9 QLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      ++..++.+|+- |.+... ...+.. +...+||++.......... .....+.+.....+...++++...  +-++++++
T Consensus        56 l~~~~vDgiii~~~~~~~~~~~i~~-~~~~gIpvV~~d~~~~~~~-~~~~~V~~d~~~~g~~aa~~l~~~~~g~~~i~~~  133 (274)
T cd06311          56 LINRKIDALVILPFESAPLTQPVAK-AKKAGIFVVVVDRGLSSPG-AQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVL  133 (274)
T ss_pred             HHHcCCCEEEEeCCCchhhHHHHHH-HHHCCCeEEEEcCCCCCCc-ccceEEcCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            45566776653 333222 233443 4678999999764322111 112235666656677777766544  78999998


Q ss_pred             eec-C-cchhhHHHHHhCCCCCCceE
Q psy18065         85 YEE-D-NGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        85 ~~~-~-~~~~~l~~l~~~~~~~~~~v  108 (149)
                      ... + ....+.+.+.+.++++++.+
T Consensus       134 ~g~~~~~~~~R~~gf~~~l~~~~~~~  159 (274)
T cd06311         134 RGIPTPIDNERVDAFDAAIAKYPIKI  159 (274)
T ss_pred             ECCCCcchhHHHHHHHHHHhhCCcEE
Confidence            754 2 23455666776666666443

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]

Probab=91.89  E-value=4.3  Score=30.53  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCC-----CC-CcccEEEecCChhHHHHHHHHHHHh--cCC
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLE-----LN-SKEFSVNLYPSQKLLNAAFKDVIRF--LNW   78 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~-----~~-~~~~~~~~~p~~~~~~~ai~~ll~~--~~W   78 (149)
                      ++..++...|++-.++. +.++.+-  ..++|.+-.+. ++.     .+ ..|-.-=+.-+|..-....+++++.  -+-
T Consensus        83 ql~~~~~dviv~i~tp~-Aq~~~s~--~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pna  159 (322)
T COG2984          83 QLVGDKPDVIVAIATPA-AQALVSA--TKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNA  159 (322)
T ss_pred             HhhcCCCcEEEecCCHH-HHHHHHh--cCCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCC
Confidence            33345566666544433 3333332  33399987653 321     11 0010011122222234455566654  489


Q ss_pred             cEEEEEeecC--cchhhHHHHHhCCCCCCceEEEEecCC-CchHHHHHHHHhCCCceEEEecCc
Q psy18065         79 TKVAIVYEED--NGLFKLQELVKTPPTLKTEMYIRHANP-STYRNVLREIRQKEIFNLIIDTST  139 (149)
Q Consensus        79 ~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~~i~~~~~~~iil~~~~  139 (149)
                      ++++++|..+  .....++++.+.++..|+.+...-++. +|.....+.+. .+.++|++-++.
T Consensus       160 k~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~-g~~d~i~~p~dn  222 (322)
T COG2984         160 KSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALL-GKVDVIYIPTDN  222 (322)
T ss_pred             eeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhc-CCCcEEEEecch
Confidence            9999999864  456777888888888998876544443 56666666665 334677776654

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional

Probab=91.71  E-value=4.1  Score=30.02  Aligned_cols=95  Identities=13%  Similarity=0.034  Sum_probs=55.0

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|- +........+.. +...++|++..+........+   .+.+.+...+...++.+...|-++++++...
T Consensus       113 l~~~~vdgiIi~~~~~~~~~~~~~-l~~~~iPvV~v~~~~~~~~~~---~V~~d~~~~~~~a~~~L~~~G~r~I~~i~~~  188 (328)
T PRK11303        113 LLQRQVDALIVSTSLPPEHPFYQR-LQNDGLPIIALDRALDREHFT---SVVSDDQDDAEMLAESLLKFPAESILLLGAL  188 (328)
T ss_pred             HHHcCCCEEEEcCCCCCChHHHHH-HHhcCCCEEEECCCCCCCCCC---EEEeCCHHHHHHHHHHHHHCCCCeEEEEeCc
Confidence            44567777664 322222333443 345789999876432212222   2344555566667777766788999999754


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  .+..+.+.+.+.++++|+.
T Consensus       189 ~~~~~~~~R~~Gf~~al~~~g~~  211 (328)
T PRK11303        189 PELSVSFEREQGFRQALKDDPRE  211 (328)
T ss_pred             cccccHHHHHHHHHHHHHHcCCC
Confidence             2  2345666677666666654

>COG1609 PurR Transcriptional regulators [Transcription]

Probab=91.42  E-value=4.9  Score=30.26  Aligned_cols=135  Identities=9%  Similarity=-0.055  Sum_probs=81.5

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +.+.+|.++|=-. ..............++|++..+.......   .-.+.+.+..-+...++.+...|-++++++....
T Consensus       110 l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~P~V~i~~~~~~~~---~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~  185 (333)
T COG1609         110 LLQKRVDGLILLG-ERPNDSLLELLAAAGIPVVVIDRSPPGLG---VPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPL  185 (333)
T ss_pred             HHHcCCCEEEEec-CCCCHHHHHHHHhcCCCEEEEeCCCccCC---CCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence            3455677766544 23333445556677999998775332122   2345667777788889999999999999998752


Q ss_pred             ---cchhhHHHHHhCCCCCCceE---EEEe--cCCCchHHHHHHHHhCCC--ceEEEecCchhHHHHHh
Q psy18065         89 ---NGLFKLQELVKTPPTLKTEM---YIRH--ANPSTYRNVLREIRQKEI--FNLIIDTSTTHISQFFR  147 (149)
Q Consensus        89 ---~~~~~l~~l~~~~~~~~~~v---~~~~--~~~~d~~~~l~~i~~~~~--~~iil~~~~~~~~~il~  147 (149)
                         .+..+++.+.+.+.+.|+..   .+..  +...+-...+.++.....  -..|+.++...+..+++
T Consensus       186 ~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~  254 (333)
T COG1609         186 DSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEPRPTAIFCANDLMALGALR  254 (333)
T ss_pred             ccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHH
Confidence               35778888888877777653   1222  222344444555443322  23445555555655554

>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators

Probab=91.35  E-value=3.8  Score=28.94  Aligned_cols=94  Identities=11%  Similarity=-0.058  Sum_probs=54.6

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +.++++.+++--........+.. ....++|.|..+.... ..   ...+...+...+...++.+...|-++++++..+ 
T Consensus        52 l~~~~vdgiii~~~~~~~~~~~~-~~~~~ipvv~~~~~~~-~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~  126 (264)
T cd01574          52 LLAQRVDGVIVNAPLDDADAALA-AAPADVPVVFVDGSPS-PR---VSTVSVDQEGGARLATEHLLELGHRTIAHVAGPE  126 (264)
T ss_pred             HHhcCCCEEEEeCCCCChHHHHH-HHhcCCCEEEEeccCC-CC---CCEEEeCcHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence            33556777763222222223333 3467899999875322 22   234556666677888888877788999998654 


Q ss_pred             Cc--chhhHHHHHhCCCCCCce
Q psy18065         88 DN--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~~--~~~~l~~l~~~~~~~~~~  107 (149)
                      +.  ...+.+.+.+.++..++.
T Consensus       127 ~~~~~~~r~~gf~~~l~~~~~~  148 (264)
T cd01574         127 EWLSARARLAGWRAALEAAGIA  148 (264)
T ss_pred             ccchHHHHHHHHHHHHHHCCCC
Confidence            22  234555566555445544

Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=91.31  E-value=3.8  Score=28.86  Aligned_cols=94  Identities=9%  Similarity=0.039  Sum_probs=57.4

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      .++...++.+++.-..... ..+...+...++|.+..+....  .   ...+.++....+...++.+..-|-++++++..
T Consensus        49 ~~l~~~~~dgii~~~~~~~-~~~~~~~~~~~ipvv~~~~~~~--~---~~~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~  122 (259)
T cd01542          49 ELLARQKVDGIILLATTIT-DEHREAIKKLNVPVVVVGQDYP--G---ISSVVYDDYGAGYELGEYLAQQGHKNIAYLGV  122 (259)
T ss_pred             HHHHhcCCCEEEEeCCCCC-HHHHHHHhcCCCCEEEEeccCC--C---CCEEEECcHHHHHHHHHHHHHcCCCcEEEEcC
Confidence            3455677888886544333 2344455667899999864321  1   12355566667788888776678899999864


Q ss_pred             c-C---cchhhHHHHHhCCCCCCc
Q psy18065         87 E-D---NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        87 ~-~---~~~~~l~~l~~~~~~~~~  106 (149)
                      . +   .+..+.+.+.+.++..|.
T Consensus       123 ~~~~~~~~~~r~~gf~~~~~~~~~  146 (259)
T cd01542         123 SESDIAVGILRKQGYLDALKEHGI  146 (259)
T ss_pred             CcccchhHHHHHHHHHHHHHHcCC
Confidence            3 2   124556666665554444

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=91.23  E-value=4.1  Score=29.02  Aligned_cols=95  Identities=12%  Similarity=0.075  Sum_probs=53.7

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +.+.++.++|--.+......+...+...++|.+....... ...+   .+......-+...++.+...|-++++++... 
T Consensus        51 l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~~-~~~~---~V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~~  126 (269)
T cd06281          51 FEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDMG-GGAD---AVLFDHAAGMRQAVEYLISLGHRRIALVGGGS  126 (269)
T ss_pred             HHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEecccC-CCCC---EEEECcHHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            3345677776433322223444556677999999864322 1112   2344444445556666655699999998653 


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      +  .+..+.+.+.+.++.+|+.
T Consensus       127 ~~~~~~~R~~Gf~~~~~~~~~~  148 (269)
T cd06281         127 NTRPGRERLEGYKAAFAAAGLP  148 (269)
T ss_pred             ccccHHHHHHHHHHHHHHcCCC
Confidence            2  2345666666665555543

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor

Probab=91.20  E-value=4.7  Score=29.72  Aligned_cols=95  Identities=11%  Similarity=-0.038  Sum_probs=54.2

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|- |........+.. +...++|.+...........+   .+.+.+..-+...++.+...|-++++++...
T Consensus       112 l~~~~vdgiIi~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~~~---~V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~  187 (327)
T TIGR02417       112 LLARQVDALIVASCMPPEDAYYQK-LQNEGLPVVALDRSLDDEHFC---SVISDDVDAAAELIERLLSQHADEFWYLGAQ  187 (327)
T ss_pred             HHHcCCCEEEEeCCCCCChHHHHH-HHhcCCCEEEEccccCCCCCC---EEEeCcHHHHHHHHHHHHHCCCCeEEEEeCc
Confidence            44556777553 333212333443 455789999876432212222   2444555556666777776789999999754


Q ss_pred             C---cchhhHHHHHhCCCCCCce
Q psy18065         88 D---NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~---~~~~~l~~l~~~~~~~~~~  107 (149)
                      .   ....+.+.+.+.+.+.|+.
T Consensus       188 ~~~~~~~~R~~Gf~~al~~~~~~  210 (327)
T TIGR02417       188 PELSVSRDRLAGFRQALKQATLE  210 (327)
T ss_pred             ccchhHHHHHHHHHHHHHHcCCC
Confidence            2   2345666666665555543

Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.

>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional

Probab=90.37  E-value=3.7  Score=27.61  Aligned_cols=81  Identities=9%  Similarity=-0.036  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCC-CCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHH
Q psy18065         65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPP-TLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHIS  143 (149)
Q Consensus        65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~-~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~  143 (149)
                      .+..+....++++-+++.++-+.-..-...+.+++.+. -.|+.+.+..+  ++..+.+++ +..+.++++++-+++++.
T Consensus        17 HGQV~~~W~~~~~~~~IiVvdD~vA~D~~~k~~lkma~~P~gvk~~i~sv--~~a~~~l~~-~~~~~~vlvl~~~~~da~   93 (158)
T PRK09756         17 HGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTI--EKTINVIGK-AAPHQKIFLICRTPQTVR   93 (158)
T ss_pred             hHHHHHhhhcccCCCEEEEEcchhcCCHHHHHHHHhcCCCCCCEEEEEEH--HHHHHHHHh-ccCCceEEEEECCHHHHH
Confidence            45556678888999998887665444456667777655 56777765443  456666666 555667888888999998


Q ss_pred             HHHhh
Q psy18065        144 QFFRA  148 (149)
Q Consensus       144 ~il~q  148 (149)
                      .++++
T Consensus        94 ~l~~~   98 (158)
T PRK09756         94 KLVEG   98 (158)
T ss_pred             HHHHc
Confidence            88764

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators

Probab=90.15  E-value=5.3  Score=28.51  Aligned_cols=91  Identities=7%  Similarity=-0.055  Sum_probs=55.5

Q ss_pred             hCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC-
Q psy18065         11 QNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED-   88 (149)
Q Consensus        11 ~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~-   88 (149)
                      ..++.+||- +... ....+ ..+...++|++..+.+.....   ...+.+.+...+...+..+...|.++++++..+. 
T Consensus        62 ~~~~dgiii~~~~~-~~~~~-~~~~~~~ipvV~~~~~~~~~~---~~~V~~d~~~~g~~~a~~l~~~g~~~i~~i~~~~~  136 (275)
T cd06295          62 SGRADGVILIGQHD-QDPLP-ERLAETGLPFVVWGRPLPGQP---YCYVGSDNVGGGRLATEHLLARGRRRIAFLGGPQD  136 (275)
T ss_pred             hCCCCEEEEeCCCC-ChHHH-HHHHhCCCCEEEECCccCCCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            356777653 3222 22333 345678999999875432222   2345566666788888888778999999997642 


Q ss_pred             --cchhhHHHHHhCCCCCCc
Q psy18065         89 --NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        89 --~~~~~l~~l~~~~~~~~~  106 (149)
                        .+..+.+.+.+.+++++.
T Consensus       137 ~~~~~~r~~gf~~~~~~~~~  156 (275)
T cd06295         137 MPEGEERLEGYREALAEAGL  156 (275)
T ss_pred             cchhHHHHHHHHHHHHHcCC
Confidence              244566667666555553

This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang

>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=90.07  E-value=5.3  Score=28.39  Aligned_cols=92  Identities=8%  Similarity=-0.088  Sum_probs=53.3

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecCc
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDN   89 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~~   89 (149)
                      .+.++.+||....... .. ...+...++|.|..+.........+   +...+...+...++.+...|.++++++.....
T Consensus        55 ~~~~vdgiii~~~~~~-~~-~~~l~~~~ipvV~~~~~~~~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~  129 (268)
T cd06277          55 EDGKVDGIILLGGIST-EY-IKEIKELGIPFVLVDHYIPNEKADC---VLTDNYSGAYAATEYLIEKGHRKIGFVGDPLY  129 (268)
T ss_pred             HHCCCCEEEEeCCCCh-HH-HHHHhhcCCCEEEEccCCCCCCCCE---EEecchHHHHHHHHHHHHCCCCcEEEECCCCC
Confidence            3567777775333222 22 3345667899998764322122233   33444455666667776679999999975421


Q ss_pred             ---chhhHHHHHhCCCCCCc
Q psy18065         90 ---GLFKLQELVKTPPTLKT  106 (149)
Q Consensus        90 ---~~~~l~~l~~~~~~~~~  106 (149)
                         ...+.+.+.+.+.+.|+
T Consensus       130 ~~~~~~R~~gf~~~~~~~~~  149 (268)
T cd06277         130 SPSFEERYEGYKKALLDHGI  149 (268)
T ss_pred             CcchHHHHHHHHHHHHHcCC
Confidence               34566666666555554

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=90.05  E-value=5.3  Score=28.38  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=57.0

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+++.++.+||--.+......+.. +...++|.+............+   +.......+...++.+...|-++++++...
T Consensus        50 ~~~~~~vdgii~~~~~~~~~~~~~-~~~~~ipvV~~~~~~~~~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~  125 (268)
T cd06270          50 FLLERRCDALILHSKALSDDELIE-LAAQVPPLVLINRHIPGLADRC---IWLDNEQGGYLATEHLIELGHRKIACITGP  125 (268)
T ss_pred             HHHHcCCCEEEEecCCCCHHHHHH-HhhCCCCEEEEeccCCCCCCCe---EEECcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence            344567777765333222222343 4567999998764322122222   456666678888888877799999998754


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       .  ....+.+.+.+.+++.|..
T Consensus       126 ~~~~~~~~R~~gf~~~~~~~~~~  148 (268)
T cd06270         126 LTKEDARLRLQGYRDALAEAGIA  148 (268)
T ss_pred             cccccHHHHHHHHHHHHHHcCCC
Confidence             2  2345566666665555543

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=90.03  E-value=5.4  Score=28.42  Aligned_cols=98  Identities=11%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             HHhhCCcEEEEc-CCCCCc-HHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEE
Q psy18065          8 RQLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAI   83 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~v   83 (149)
                      .++..++.+|+= |..... ...+.. +...++|.+..+.....  ..+...+.+.+...+...++.+...  |=+++++
T Consensus        51 ~~~~~~vdgiii~~~~~~~~~~~~~~-~~~~~ipvV~~~~~~~~--~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~  127 (270)
T cd06308          51 NFIRQGVDLLIISPNEAAPLTPVVEE-AYRAGIPVILLDRKILS--DKYTAYIGADNYEIGRQAGEYIANLLPGKGNILE  127 (270)
T ss_pred             HHHHhCCCEEEEecCchhhchHHHHH-HHHCCCCEEEeCCCCCC--ccceEEeecCcHHHHHHHHHHHHHHcCCCceEEE
Confidence            344556665543 333221 233333 45689999998643221  1223346667666777777777554  8899999


Q ss_pred             Eeec-Cc--chhhHHHHHhCCCCC-CceE
Q psy18065         84 VYEE-DN--GLFKLQELVKTPPTL-KTEM  108 (149)
Q Consensus        84 i~~~-~~--~~~~l~~l~~~~~~~-~~~v  108 (149)
                      +... +.  ...+.+.+.+.++.+ ++.+
T Consensus       128 l~~~~~~~~~~~R~~g~~~~l~~~~~~~~  156 (270)
T cd06308         128 IWGLEGSSPAIERHDGFKEALSKYPKIKI  156 (270)
T ss_pred             EECCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence            9753 22  345667777766666 6654

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia

Probab=89.88  E-value=5.4  Score=28.21  Aligned_cols=94  Identities=11%  Similarity=0.098  Sum_probs=53.6

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .++..++.++|-.........+.. +...++|+|..+........++ +  .+.+..-....++.+...|-++++++...
T Consensus        50 ~l~~~~vdgiIi~~~~~~~~~~~~-l~~~~ipvV~~~~~~~~~~~~~-v--~~d~~~~~~~~~~~l~~~g~~~I~~i~~~  125 (265)
T cd06299          50 NLLSQRVDGIIVVPHEQSAEQLED-LLKRGIPVVFVDREITGSPIPF-V--TSDPQPGMTEAVSLLVALGHKKIGYISGP  125 (265)
T ss_pred             HHHhcCCCEEEEcCCCCChHHHHH-HHhCCCCEEEEecccCCCCCCE-E--EECcHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            445667777765433333334444 4567999999876433233333 2  23333344555666666688999998653


Q ss_pred             C---cchhhHHHHHhCCCCCC
Q psy18065         88 D---NGLFKLQELVKTPPTLK  105 (149)
Q Consensus        88 ~---~~~~~l~~l~~~~~~~~  105 (149)
                      .   ....+.+.+.+.+++.+
T Consensus       126 ~~~~~~~~R~~gf~~~~~~~~  146 (265)
T cd06299         126 QDTSTGRERLEAFRQACASLG  146 (265)
T ss_pred             CCcccHHHHHHHHHHHHHHCC
Confidence            2   23455566666655555

This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=89.21  E-value=6.2  Score=27.98  Aligned_cols=71  Identities=4%  Similarity=-0.012  Sum_probs=44.0

Q ss_pred             cccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC--cchhhHHHHHhCCCCCCce
Q psy18065         34 EALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        34 ~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      ...++|.|...........++   .......-+...++.+...|-++++++....  ....+.+.+.+.+.+.+..
T Consensus        74 ~~~~iPvV~~~~~~~~~~~~~---v~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~  146 (263)
T cd06280          74 LRLSFPVVLIDRAGPAGRVDA---VVLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYEDAMRRHGLA  146 (263)
T ss_pred             HhcCCCEEEECCCCCCCCCCE---EEECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHHHHHHHHHHcCCC
Confidence            456899999875322223333   2344555677777877777999999986542  2345666666665555543

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional

Probab=89.05  E-value=3.9  Score=27.44  Aligned_cols=81  Identities=7%  Similarity=-0.022  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHH
Q psy18065         65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQ  144 (149)
Q Consensus        65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~  144 (149)
                      .+..+....++++-+++.++-+.-..-...+.+++.+.-.|+.+.+...  ++..+.+++ +..+.++++++-++.++..
T Consensus        15 HGQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sv--~~a~~~l~~-~~~~~~v~il~k~~~d~~~   91 (157)
T PRK11425         15 HGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTL--QKVIDNIHR-AADRQKILLVCKTPADFLT   91 (157)
T ss_pred             hHHhhhhhhcccCCCEEEEEcchhcCCHHHHHHHHhhCCCCCeEEEEEH--HHHHHHHhc-cCCCceEEEEECCHHHHHH
Confidence            3555666778888888877765544444666777777667777766443  456677776 5555678888888899988


Q ss_pred             HHhh
Q psy18065        145 FFRA  148 (149)
Q Consensus       145 il~q  148 (149)
                      ++++
T Consensus        92 l~~~   95 (157)
T PRK11425         92 LVKG   95 (157)
T ss_pred             HHHc
Confidence            8763

>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors

Probab=88.91  E-value=6.5  Score=27.82  Aligned_cols=94  Identities=12%  Similarity=0.004  Sum_probs=56.9

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|........  +.......++|.+..........   ...+.+.+...+...++.+...|-++++++...
T Consensus        51 ~l~~~~~dgiii~~~~~~~--~~~~~~~~~ipvv~~~~~~~~~~---~~~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~~  125 (269)
T cd06288          51 ALLDHRVDGIIYATMYHRE--VTLPPELLSVPTVLLNCYDADGA---LPSVVPDEEQGGYDATRHLLAAGHRRIAFINGE  125 (269)
T ss_pred             HHHHcCCCEEEEecCCCCh--hHHHHHhcCCCEEEEecccCCCC---CCeEEEccHHHHHHHHHHHHHcCCceEEEEeCC
Confidence            3445567777765432221  12223456899988764322122   234666777778888887766699999999764


Q ss_pred             C---cchhhHHHHHhCCCCCCc
Q psy18065         88 D---NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 ~---~~~~~l~~l~~~~~~~~~  106 (149)
                      .   ....+.+.+.+.++.+++
T Consensus       126 ~~~~~~~~R~~gf~~~~~~~~~  147 (269)
T cd06288         126 PWMLAAKDRLKGYRQALAEAGI  147 (269)
T ss_pred             ccchhHHHHHHHHHHHHHHcCC
Confidence            3   234566667666655554

This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs

Probab=88.07  E-value=7.4  Score=27.51  Aligned_cols=71  Identities=8%  Similarity=-0.011  Sum_probs=44.7

Q ss_pred             hcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C-c--chhhHHHHHhCCCCCCce
Q psy18065         33 CEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D-N--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        33 ~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~-~--~~~~l~~l~~~~~~~~~~  107 (149)
                      +...++|.+....... ...+   .+.+.....+...++.+...|.++++++... + .  +..+.+.+.+.++++|+.
T Consensus        71 ~~~~gipvv~~~~~~~-~~~~---~V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~  145 (265)
T cd06291          71 YENIDLPIVSFDRYLS-ENIP---IVSSDNYEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLE  145 (265)
T ss_pred             HhcCCCCEEEEeCCCC-CCCC---eEeechHHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHHHHHcCCC
Confidence            3467899999875432 2223   2455555567777777766799999998653 3 2  345666666665555543

This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription

>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component

Probab=88.04  E-value=4.2  Score=27.10  Aligned_cols=80  Identities=6%  Similarity=-0.006  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065         66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      +..+....++++-+.+.++-+.-..-...+.+++.+.-.|+.+.+...  ++..+.+++-+..+.++++++-++..+..+
T Consensus        14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~lkma~P~gvk~~i~sv--e~a~~~l~~~~~~~~~v~vl~k~~~da~~l   91 (151)
T TIGR00854        14 GQVGTTWTKVAGANRIIVVNDDVANDEVRQTLMGIVAPTGFKVRFVSL--EKTINVIHKPAYHDQTIFLLFRNPQDVLTL   91 (151)
T ss_pred             hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhhCCCCCEEEEEEH--HHHHHHHhCcCCCCceEEEEECCHHHHHHH
Confidence            445566778888888888766544445667778777667877766443  345555555445556788888888988888


Q ss_pred             Hh
Q psy18065        146 FR  147 (149)
Q Consensus       146 l~  147 (149)
                      ++
T Consensus        92 ~~   93 (151)
T TIGR00854        92 VE   93 (151)
T ss_pred             HH
Confidence            76

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.

>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=87.74  E-value=7.8  Score=27.39  Aligned_cols=94  Identities=10%  Similarity=-0.013  Sum_probs=53.2

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|--........+..+ . .++|.+..+........+   .+...+...+..+++.+...|-++++++...
T Consensus        50 ~l~~~~~dgiii~~~~~~~~~~~~~-~-~~iPvV~i~~~~~~~~~~---~V~~d~~~a~~~~~~~l~~~g~~~i~~i~~~  124 (265)
T cd06290          50 LLKSRRVDALILLGGDLPEEEILAL-A-EEIPVLAVGRRVPGPGAA---SIAVDNFQGGYLATQHLIDLGHRRIAHITGP  124 (265)
T ss_pred             HHHHCCCCEEEEeCCCCChHHHHHH-h-cCCCEEEECCCcCCCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCc
Confidence            3445667776633222222333333 2 489999987532212222   3445666667777776665688999998654


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  ....+.+.+.+.+.+.++
T Consensus       125 ~~~~~~~~r~~gf~~~~~~~~~  146 (265)
T cd06290         125 RGHIDARDRLAGYRKALEEAGL  146 (265)
T ss_pred             cccchhhHHHHHHHHHHHHcCC
Confidence             2  234566666665544454

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors

Probab=87.60  E-value=8  Score=27.35  Aligned_cols=91  Identities=10%  Similarity=-0.028  Sum_probs=51.9

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecCc-
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDN-   89 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~~-   89 (149)
                      .++.++|-.........+. .+...++|++........ ..   ...+.+.+...+...++.+...|-++++++..... 
T Consensus        59 ~~~dgiii~~~~~~~~~~~-~~~~~~ipvV~~~~~~~~~~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~  134 (270)
T cd06294          59 KRVDGFILLYSREDDPIID-YLKEEKFPFVVIGKPEDDKEN---ITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGDLDL  134 (270)
T ss_pred             cCcCEEEEecCcCCcHHHH-HHHhcCCCEEEECCCCCCCCC---CCeEEECcHHHHHHHHHHHHHcCCccEEEecCCccc
Confidence            3466655433222223333 356679999998743221 12   22344455556667777776669999999975421 


Q ss_pred             --chhhHHHHHhCCCCCCc
Q psy18065         90 --GLFKLQELVKTPPTLKT  106 (149)
Q Consensus        90 --~~~~l~~l~~~~~~~~~  106 (149)
                        ...+.+.+.+.++++|+
T Consensus       135 ~~~~~r~~gf~~~~~~~~~  153 (270)
T cd06294         135 EVTQDRLQGYKQALEDHGI  153 (270)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence              33456666666655553

This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit

Probab=87.31  E-value=4.8  Score=26.80  Aligned_cols=81  Identities=9%  Similarity=0.041  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHH
Q psy18065         65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQ  144 (149)
Q Consensus        65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~  144 (149)
                      .+..+....++++-+++.++-+.-..-...+.+++.+.-.|+.+.+...  ++..+.+++-+..+.+++++.-+++.+..
T Consensus        12 HGQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sv--e~a~~~l~~~~~~~~~v~il~k~~~~~~~   89 (151)
T cd00001          12 HGQVATTWTKELNANRIIVVNDEVANDELRKTLLKLAAPPGVKLRIFTV--EKAIEAINSPKYDKQRVFLLFKNPQDVLR   89 (151)
T ss_pred             hhHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhhCCCCCeEEEEEH--HHHHHHHhCcCCCCceEEEEECCHHHHHH
Confidence            3555666778888888888766544445667777777667777766443  34555555544456678888888888888


Q ss_pred             HHh
Q psy18065        145 FFR  147 (149)
Q Consensus       145 il~  147 (149)
                      +++
T Consensus        90 l~~   92 (151)
T cd00001          90 LVE   92 (151)
T ss_pred             HHH
Confidence            876

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.

>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=86.82  E-value=9.1  Score=27.17  Aligned_cols=95  Identities=6%  Similarity=-0.103  Sum_probs=57.7

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|--.+......+..+. ..++|.+..+........   ..+.+.+...+...++.+...|-++++++...
T Consensus        50 ~~~~~~~dgiii~~~~~~~~~~~~~~-~~~~pvV~i~~~~~~~~~---~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~  125 (269)
T cd06293          50 WLDTNHVDGLIFVTNRPDDGALAKLI-NSYGNIVLVDEDVPGAKV---PKVFCDNEQGGRLATRHLARAGHRRIAFVGGP  125 (269)
T ss_pred             HHHHCCCCEEEEeCCCCCHHHHHHHH-hcCCCEEEECCCCCCCCC---CEEEECCHHHHHHHHHHHHHCCCceEEEEecC
Confidence            44456788877543332333344433 347999997753321111   24556776778888887877799999999643


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  ....+.+.+.+.+++.|.
T Consensus       126 ~~~~~~~~R~~Gf~~a~~~~~~  147 (269)
T cd06293         126 DALISARERYAGYREALAEAHI  147 (269)
T ss_pred             cccccHHHHHHHHHHHHHHcCC
Confidence             2  234566777766655554

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=86.68  E-value=9.8  Score=27.39  Aligned_cols=74  Identities=9%  Similarity=-0.050  Sum_probs=47.0

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      .+...++.+++--........+. .+...++|.+....... ..   .-.+.+.....+...++.+...|-++++++..
T Consensus        51 ~~~~~~~dgiii~~~~~~~~~~~-~~~~~~ipvV~~~~~~~-~~---~~~v~~d~~~~g~~~~~~L~~~g~~~i~~i~~  124 (283)
T cd06279          51 LVVSALVDGFIVYGVPRDDPLVA-ALLRRGLPVVVVDQPLP-PG---VPSVGIDDRAAAREAARHLLDLGHRRIGILGL  124 (283)
T ss_pred             HHHhcCCCEEEEeCCCCChHHHH-HHHHcCCCEEEEecCCC-CC---CCEEeeCcHHHHHHHHHHHHHcCCCcEEEecC
Confidence            34456777777643332323333 35678999998764322 11   23456666667788888887789999999865

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=85.91  E-value=0.88  Score=31.18  Aligned_cols=30  Identities=20%  Similarity=0.470  Sum_probs=27.0

Q ss_pred             EEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         15 QALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      +.|+||+++.=+.....+++.+++|||+.+
T Consensus         3 iiilG~pGaGK~T~A~~La~~~~i~hlstg   32 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTG   32 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEcHh
Confidence            689999998888888999999999999965

>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs

Probab=85.71  E-value=10  Score=26.78  Aligned_cols=95  Identities=8%  Similarity=-0.035  Sum_probs=55.2

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.+++-.........+.. +...++|.+...........++   +...+...+..++..+..-|-++++++...
T Consensus        50 ~l~~~~vdgiii~~~~~~~~~~~~-~~~~~ipvV~~~~~~~~~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~  125 (264)
T cd06274          50 TLIARQVDALIVAGSLPPDDPYYL-CQKAGLPVVALDRPGDPSRFPS---VVSDNRDGAAELTRELLAAPPEEVLFLGGL  125 (264)
T ss_pred             HHHHcCCCEEEEcCCCCchHHHHH-HHhcCCCEEEecCccCCCCCCE---EEEccHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            445667777664433323333444 5568899999875432222232   344444556666776666788999998654


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  ....+.+.+.+.+...|.
T Consensus       126 ~~~~~~~~R~~gf~~~~~~~~~  147 (264)
T cd06274         126 PELSPSRERLAGFRQALADAGL  147 (264)
T ss_pred             CcccchHHHHHHHHHHHHHcCC
Confidence             2  234566667666555553

Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=85.00  E-value=13  Score=27.47  Aligned_cols=99  Identities=10%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|--........+..+....++|++.........  .+.-...+....-+...++.+...|-+++++|...
T Consensus       110 ~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~~~~~--~~~~~v~~d~~~~g~~a~~~L~~~G~~~i~~i~~~  187 (341)
T PRK10703        110 MLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAIIDNAFEGGYLAGRYLIERGHRDIGVIPGP  187 (341)
T ss_pred             HHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEecccCCc--CCCCeEEECcHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            3445567766532222223334444332699999876432211  11112445544456677776665688999998643


Q ss_pred             -C--cchhhHHHHHhCCCCCCceE
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~v  108 (149)
                       +  .+..+.+.+.+.+++.|+.+
T Consensus       188 ~~~~~~~~R~~Gf~~~l~~~gi~~  211 (341)
T PRK10703        188 LERNTGAGRLAGFMKAMEEANIKV  211 (341)
T ss_pred             ccccchHHHHHHHHHHHHHcCCCC
Confidence             2  34556666766665666543

>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators

Probab=84.63  E-value=12  Score=26.45  Aligned_cols=94  Identities=7%  Similarity=-0.076  Sum_probs=54.7

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|-.........+ ......++|.+..+.... ...+   .+...+...+..+++.+...|-++++++...
T Consensus        46 ~l~~~~vdgii~~~~~~~~~~~-~~~~~~~ipvV~~~~~~~-~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~  120 (261)
T cd06272          46 LFKENRFDGVIIFGESASDVEY-LYKIKLAIPVVSYGVDYD-LKYP---IVNVDNEKAMELAVLYLAEKGHKKIAYIGDL  120 (261)
T ss_pred             HHHHcCcCEEEEeCCCCChHHH-HHHHHcCCCEEEEcccCC-CCCC---EEEEChHHHHHHHHHHHHHcCchhEEEeecc
Confidence            3445567766533222223233 334578899998764322 2223   2445556667777887766788999999754


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  ....+.+.+.+.+++.|+
T Consensus       121 ~~~~~~~~R~~gf~~~~~~~~~  142 (261)
T cd06272         121 SLDRRQRKRFKGFLETCDENGI  142 (261)
T ss_pred             cccccHHHHHHHHHHHHHHcCC
Confidence             2  234556666666555553

Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor

>PRK10423 transcriptional repressor RbsR; Provisional

Probab=84.60  E-value=14  Score=27.19  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=42.0

Q ss_pred             cCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C--cchhhHHHHHhCCCCCCce
Q psy18065         36 LDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        36 ~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      .++|++..+.........   ...+....-+...++.+...|-++++++... +  ....+.+.+.+.+++.|+.
T Consensus       135 ~~iPvV~i~~~~~~~~~~---~v~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~  206 (327)
T PRK10423        135 PSVPTVMMDWAPFDGDSD---LIQDNSLLGGDLATQYLIDKGYTRIACITGPLDKTPARLRLEGYRAAMKRAGLN  206 (327)
T ss_pred             CCCCEEEECCccCCCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEeCCccccchHHHHHHHHHHHHHcCCC
Confidence            489999876432111111   2444444456677777777799999998643 2  2345667777766666654

>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains

Probab=84.19  E-value=2  Score=28.64  Aligned_cols=81  Identities=15%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065         66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      +..+...+++++-+.+.++-+.-..-...+.+++.+.-.|+.+.+...  ++..+.+++-...+.++++++-++..+..+
T Consensus        14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sv--~~a~~~l~~~~~~~~~v~ii~k~~~d~~~l   91 (151)
T PF03830_consen   14 GQVATAWVKKLNANRIIVVDDEVANDPFQKMILKMAAPAGVKLSIFSV--EEAIEKLKKPEYSKKRVLIIVKSPEDALRL   91 (151)
T ss_dssp             TTHHHHHHHHHTTSEEEEE-HHHHHSHHHHHHHHHTSHTTSEEEEE-H--HHHHHHHCGGGGTTEEEEEEESSHHHHHHH
T ss_pred             eeeeEEEhhhcccCEEEEECHHHhcCHHHHHHHHHhhcCCCceEEEEH--HHHHHHHHhcccCCceEEEEECCHHHHHHH
Confidence            455677889999999988866544455667777776666777766443  456666666666677888888899999888


Q ss_pred             Hhh
Q psy18065        146 FRA  148 (149)
Q Consensus       146 l~q  148 (149)
                      +++
T Consensus        92 ~~~   94 (151)
T PF03830_consen   92 VEA   94 (151)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            764

The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators

Probab=84.08  E-value=12  Score=26.29  Aligned_cols=94  Identities=9%  Similarity=-0.056  Sum_probs=54.6

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      ++..++.++|--........+ ..+...++|.+..+.......   ...+.......+...++.+...|-++++++..+.
T Consensus        51 l~~~~vdgiii~~~~~~~~~~-~~~~~~~ipvv~~~~~~~~~~---~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~  126 (268)
T cd01575          51 LLSRRPAGLILTGLEHTERTR-QLLRAAGIPVVEIMDLPPDPI---DMAVGFSHAEAGRAMARHLLARGYRRIGFLGARM  126 (268)
T ss_pred             HHHcCCCEEEEeCCCCCHHHH-HHHHhcCCCEEEEecCCCCCC---CCeEEeCcHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence            445567777653332222333 345567999998753221111   1234555566777778878777999999998652


Q ss_pred             ---cchhhHHHHHhCCCCCCc
Q psy18065         89 ---NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        89 ---~~~~~l~~l~~~~~~~~~  106 (149)
                         ....+.+.+.+.+++.+.
T Consensus       127 ~~~~~~~r~~gf~~~l~~~~~  147 (268)
T cd01575         127 DDTRAQQRLEGFRAALRAAGL  147 (268)
T ss_pred             CcccHHHHHHHHHHHHHHcCC
Confidence               233455556665555443

This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional

Probab=84.07  E-value=15  Score=27.29  Aligned_cols=94  Identities=9%  Similarity=0.020  Sum_probs=51.5

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCC-ceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVP-HMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP-~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +..+++.++|--........+..+..  ++| .+...........++   +.+.+..-+...++.+...|.++++++...
T Consensus       111 l~~~~vdgiIi~~~~~~~~~~~~~~~--~~p~vV~i~~~~~~~~~~~---V~~Dn~~~~~~a~~~L~~~G~~~I~~i~~~  185 (343)
T PRK10727        111 LIRHRCAALVVHAKMIPDAELASLMK--QIPGMVLINRILPGFENRC---IALDDRYGAWLATRHLIQQGHTRIGYLCSN  185 (343)
T ss_pred             HHhcCCCEEEEecCCCChHHHHHHHh--cCCCEEEEecCCCCCCCCE---EEECcHHHHHHHHHHHHHCCCccEEEEeCC
Confidence            44566766664322222333444433  677 666553221111122   445555556666676666799999999653


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.+++.|+.
T Consensus       186 ~~~~~~~~R~~Gf~~al~~~gi~  208 (343)
T PRK10727        186 HSISDAEDRLQGYYDALAESGIP  208 (343)
T ss_pred             ccccchHHHHHHHHHHHHHCCCC
Confidence             2  2345667777766666654

>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species

Probab=83.97  E-value=12  Score=26.25  Aligned_cols=95  Identities=8%  Similarity=-0.080  Sum_probs=55.8

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      ..+...++.++|=.........+..+... + |.+....... ...+   .+.+.....+...++.+...|-++++++..
T Consensus        49 ~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~-pvv~~~~~~~-~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~  122 (260)
T cd06286          49 ELLKTKQVDGLILCSRENDWEVIEPYTKY-G-PIVLCEEYDS-KNIS---SVYIDHYEAFYEALKYLIQKGYRKIAYCIG  122 (260)
T ss_pred             HHHHHcCCCEEEEeCCCCCHHHHHHHhcC-C-CEEEEecccC-CCCC---EEEECChHHHHHHHHHHHHCCCceEEEEcC
Confidence            34455667766643332334455555443 4 8887653222 2222   355566667777888777779999999975


Q ss_pred             c-C--cchhhHHHHHhCCCCCCce
Q psy18065         87 E-D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        87 ~-~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      + +  ....+.+.+.+.+++.|+.
T Consensus       123 ~~~~~~~~~R~~Gf~~~l~~~~~~  146 (260)
T cd06286         123 RKKSLNSQSRKKAYKDALEEYGLT  146 (260)
T ss_pred             CcccchhHHHHHHHHHHHHHcCCC
Confidence            4 2  2345666677666555543

This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.

>PRK09526 lacI lac repressor; Reviewed

Probab=83.47  E-value=16  Score=27.07  Aligned_cols=93  Identities=11%  Similarity=0.089  Sum_probs=53.9

Q ss_pred             HHhhCCcEEEEc--CCCCCcHHHHHHhh-cccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEE
Q psy18065          8 RQLQNGVQALFG--PSDALLGPHVQSIC-EALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiG--p~~s~~~~~v~~~~-~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi   84 (149)
                      .+.+.++.++|-  |.....   +..+. ...++|.+...... ....   -.+.+.+..-+...++.+...|-++++++
T Consensus       115 ~l~~~~vdGiii~~~~~~~~---~~~~~~~~~~iPvV~~d~~~-~~~~---~~V~~d~~~~~~~a~~~L~~~G~~~I~~l  187 (342)
T PRK09526        115 ELLAQRVSGVIINVPLEDAD---AEKIVADCADVPCLFLDVSP-QSPV---NSVSFDPEDGTRLGVEHLVELGHQRIALL  187 (342)
T ss_pred             HHHhcCCCEEEEecCCCcch---HHHHHhhcCCCCEEEEeccC-CCCC---CEEEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence            344567777664  433322   22222 23589998875422 1111   23455655566777787777799999999


Q ss_pred             eecC---cchhhHHHHHhCCCCCCce
Q psy18065         85 YEED---NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        85 ~~~~---~~~~~l~~l~~~~~~~~~~  107 (149)
                      ....   ....+.+.+.+.+++.|+.
T Consensus       188 ~g~~~~~~~~~R~~Gf~~al~~~gi~  213 (342)
T PRK09526        188 AGPESSVSARLRLAGWLEYLTDYQLQ  213 (342)
T ss_pred             eCCCccccHHHHHHHHHHHHHHcCCC
Confidence            7532   2345666666666566654

>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR

Probab=83.32  E-value=13  Score=26.10  Aligned_cols=93  Identities=9%  Similarity=-0.041  Sum_probs=53.7

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.+|+--........+.. +...++|.|...........+   .+...+...+...++.+...|-++++++....
T Consensus        51 l~~~~~dgiii~~~~~~~~~l~~-~~~~~ipvV~~~~~~~~~~~~---~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~  126 (267)
T cd06283          51 LLAYQVDGLIVNPTGNNKELYQR-LAKNGKPVVLVDRKIPELGVD---TVTLDNYEAAKEAVDHLIEKGYERILFVTEPL  126 (267)
T ss_pred             HHHcCcCEEEEeCCCCChHHHHH-HhcCCCCEEEEcCCCCCCCCC---EEEeccHHHHHHHHHHHHHcCCCcEEEEecCc
Confidence            44556666663322222333444 456799999987543222222   23344455677778878777999999997542


Q ss_pred             c----chhhHHHHHhCCCCCC
Q psy18065         89 N----GLFKLQELVKTPPTLK  105 (149)
Q Consensus        89 ~----~~~~l~~l~~~~~~~~  105 (149)
                      .    ...+.+.+.+..+..+
T Consensus       127 ~~~~~~~~r~~g~~~~~~~~~  147 (267)
T cd06283         127 DEISPRMERYEGFKEALAEHG  147 (267)
T ss_pred             cccccHHHHHHHHHHHHHHcC
Confidence            2    1345666666554444

Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=83.10  E-value=15  Score=26.54  Aligned_cols=95  Identities=8%  Similarity=0.029  Sum_probs=51.2

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc------CCcEE
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL------NWTKV   81 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~------~W~~v   81 (149)
                      ++..++.+|+- |..+......-..+...++|++............+  .+.......+....+.+...      |=+++
T Consensus        51 ~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~~~~~~~~~--~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i  128 (288)
T cd01538          51 MIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRLILNSNVDY--YVSFDNEKVGELQGQALVDGLGAKGKPPGNI  128 (288)
T ss_pred             HHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCCCCCCCcce--EEEeChHHHHHHHHHHHHHHHhhcCCCCceE
Confidence            45566776663 33332222333335567999999865322111122  23445445566666655333      77899


Q ss_pred             EEEeec-C--cchhhHHHHHhCCCCCC
Q psy18065         82 AIVYEE-D--NGLFKLQELVKTPPTLK  105 (149)
Q Consensus        82 ~vi~~~-~--~~~~~l~~l~~~~~~~~  105 (149)
                      +++..+ +  ....+.+.+.+.+++.+
T Consensus       129 ~~l~g~~~~~~~~~R~~gf~~~l~~~~  155 (288)
T cd01538         129 ELIAGSPTDNNAKLFFNGAMSVLKPLI  155 (288)
T ss_pred             EEEECCCCCchHHHHHHHHHHHHHhcc
Confidence            988654 2  23455666666655554

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems

Probab=82.83  E-value=16  Score=26.89  Aligned_cols=72  Identities=13%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             HHHHHHHHHh-c-CCcEEEEEeecCcc--hhhHHHHHhCCCCCCceEEEEecCC-CchHHHHHHHHhCCCceEEEecC
Q psy18065         66 NAAFKDVIRF-L-NWTKVAIVYEEDNG--LFKLQELVKTPPTLKTEMYIRHANP-STYRNVLREIRQKEIFNLIIDTS  138 (149)
Q Consensus        66 ~~ai~~ll~~-~-~W~~v~vi~~~~~~--~~~l~~l~~~~~~~~~~v~~~~~~~-~d~~~~l~~i~~~~~~~iil~~~  138 (149)
                      ....+++++. + +-++++++|++++.  ....+.+.+..++.|+.+....++. .+....+..+... .+.+++..+
T Consensus       117 ~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~-~da~~~~~~  193 (294)
T PF04392_consen  117 IEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEK-VDALYLLPD  193 (294)
T ss_dssp             HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT--SEEEE-S-
T ss_pred             HHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhcc-CCEEEEECC
Confidence            3455565544 3 57999999997543  4455566666666787766555543 6777888877654 456666543

ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.

>PLN02674 adenylate kinase

Probab=82.56  E-value=1.7  Score=31.43  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-------C--------------------------------CCCcc
Q psy18065         13 GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-------E--------------------------------LNSKE   53 (149)
Q Consensus        13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-------~--------------------------------~~~~~   53 (149)
                      ....++||.++.=+...+.++..+++++|+.+--.       +                                .....
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g  111 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG  111 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCc
Confidence            45788999999888888999999999999875200       0                                00124


Q ss_pred             cEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065         54 FSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus        54 ~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      |++-=+|....|+..+-.++..+|..
T Consensus       112 ~ilDGfPRt~~Qa~~l~~~l~~~~~~  137 (244)
T PLN02674        112 FILDGFPRTVVQAQKLDEMLAKQGAK  137 (244)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            66777788888888888888776644

>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR)

Probab=81.99  E-value=16  Score=25.94  Aligned_cols=95  Identities=6%  Similarity=-0.063  Sum_probs=58.0

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|-...+  ...+ ..+...++|.+..+.......   .-++...+..-+...++.+...|-++++++...
T Consensus        45 ~l~~~~vdGiI~~~~~--~~~~-~~l~~~~~PvV~~~~~~~~~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~  118 (265)
T cd01543          45 WLKDWQGDGIIARIDD--PEMA-EALQKLGIPVVDVSGSREKPG---IPRVTTDNAAIGRMAAEHFLERGFRHFAFYGLP  118 (265)
T ss_pred             hccccccceEEEECCC--HHHH-HHHhhCCCCEEEEeCccCCCC---CCEEeeCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            3445567777753221  2222 334567999999875322111   235666776777778888877799999998654


Q ss_pred             Cc--chhhHHHHHhCCCCCCceE
Q psy18065         88 DN--GLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        88 ~~--~~~~l~~l~~~~~~~~~~v  108 (149)
                      ..  ...+.+.+.+.+++.|..+
T Consensus       119 ~~~~~~~R~~gf~~~~~~~~~~~  141 (265)
T cd01543         119 GARWSDEREEAFRQLVAEAGYEC  141 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCcc
Confidence            32  3355666777666666543

Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]

Probab=81.17  E-value=22  Score=27.62  Aligned_cols=72  Identities=14%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCcch--hhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecC
Q psy18065         65 LNAAFKDVIRFLNWTKVAIVYEEDNGL--FKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTS  138 (149)
Q Consensus        65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~--~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~  138 (149)
                      ...+..+..+...-+.|.++|+..+|.  ...+.+-+...+.|+.+...++...|..++++.|.++.  .+++-.+
T Consensus       233 i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~--~~vvGsP  306 (388)
T COG0426         233 IVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAK--GLVVGSP  306 (388)
T ss_pred             HHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcc--eEEEecC
Confidence            444555555444334799999998774  44666777788889888777776668888888888874  5555444

>PTZ00088 adenylate kinase 1; Provisional

Probab=80.87  E-value=2.1  Score=30.58  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCcHHHHHHhhcccCCCceeecc
Q psy18065         15 QALFGPSDALLGPHVQSICEALDVPHMESRL   45 (149)
Q Consensus        15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~   45 (149)
                      ..++||.++.=+.....++..+++|+|+.+.
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~gd   39 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKENLKHINMGN   39 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence            7899999999888888999999999999763

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=80.72  E-value=2.3  Score=28.75  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=27.4

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      ++.++||++|.=+.....++..++.++|+.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~   31 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAG   31 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECC
Confidence            4689999998888888889999999999975

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=80.62  E-value=1.1  Score=29.40  Aligned_cols=28  Identities=14%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             EEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         17 LFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        17 iiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      |+||++|.=+.....++..+++++|+.+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~   28 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVG   28 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechH
Confidence            6899999988888999999999999976

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=80.48  E-value=18  Score=25.68  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             HHHhhCCcEEEE-cCCCCC----cHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          7 CRQLQNGVQALF-GPSDAL----LGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         7 c~~~~~~v~aii-Gp~~s~----~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      ..++..++.++| .|..+.    ....+.. +...++|.+..+......  . ...+...+..-+...++.+...|.+++
T Consensus        49 ~~l~~~~vdgii~~~~~~~~~~~~~~~~~~-~~~~~ipvV~~~~~~~~~--~-~~~V~~D~~~~g~~~~~~l~~~G~~~i  124 (273)
T cd01541          49 ENMLSQGIDGLIIEPTKSALPNPNIDLYLK-LEKLGIPYVFINASYEEL--N-FPSLVLDDEKGGYKATEYLIELGHRKI  124 (273)
T ss_pred             HHHHHcCCCEEEEeccccccccccHHHHHH-HHHCCCCEEEEecCCCCC--C-CCEEEECcHHHHHHHHHHHHHcCCcCE
Confidence            355667777776 333221    1122333 466789999987432211  1 134556666677778887777799999


Q ss_pred             EEEeecC--cchhhHHHHHhCCCCCCc
Q psy18065         82 AIVYEED--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        82 ~vi~~~~--~~~~~l~~l~~~~~~~~~  106 (149)
                      +++...+  .+..+.+.+.+..+..+.
T Consensus       125 ~~l~~~~~~~~~~r~~g~~~~l~~~~~  151 (273)
T cd01541         125 AGIFKADDLQGVKRMKGFIKAYREHGI  151 (273)
T ss_pred             EEecCCCcccHHHHHHHHHHHHHHcCC
Confidence            9887543  234555556655544443

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=80.13  E-value=18  Score=25.52  Aligned_cols=94  Identities=12%  Similarity=0.015  Sum_probs=55.6

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|=..+......+.. +...++|++..+....  ..+   .+......-+...++.+...|-++++++...
T Consensus        50 ~l~~~~~dgiii~~~~~~~~~~~~-~~~~~iPvv~~~~~~~--~~~---~V~~d~~~ag~~a~~~L~~~g~~~i~~i~~~  123 (265)
T cd06285          50 MLLDRRVDGLILGDARSDDHFLDE-LTRRGVPFVLVLRHAG--TSP---AVTGDDVLGGRLATRHLLDLGHRRIAVLAGP  123 (265)
T ss_pred             HHHHcCCCEEEEecCCCChHHHHH-HHHcCCCEEEEccCCC--CCC---EEEeCcHHHHHHHHHHHHHCCCccEEEEeCC
Confidence            344566776653222223333433 4667999998764321  222   2344555566777777776788999998754


Q ss_pred             C---cchhhHHHHHhCCCCCCce
Q psy18065         88 D---NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~---~~~~~l~~l~~~~~~~~~~  107 (149)
                      .   .+..+.+.+.+.+++.|..
T Consensus       124 ~~~~~~~~R~~Gf~~~~~~~~~~  146 (265)
T cd06285         124 DYASTARDRLAGFRAALAEAGIE  146 (265)
T ss_pred             cccccHHHHHHHHHHHHHHcCCC
Confidence            2   2456677777666555543

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3h6g_A	395	Crystal Structure Of The Glur6 Amino Terminal Domai		1e-22
3qlt_A	395	Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge H		1e-22
3olz_A	398	Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At		5e-21
3o2j_A	388	Structure Of The Glua2 Ntd-Dimer Interface Mutant,		2e-06
3om0_A	393	Crystal Structure Of The Gluk5 (Ka2) Atd Crystallog		2e-06
3kg2_A	823	Ampa Subtype Ionotropic Glutamate Receptor In Compl		5e-06
3n6v_A	374	Structure Of The Glua2 Ntd-Dimer Interface Mutant,		5e-06
3hsy_A	376	High Resolution Structure Of A Dimeric Glur2 N-Term		5e-06
3h5v_A	394	Crystal Structure Of The Glur2-atd Length = 394		6e-06
2wjw_A	388	Crystal Structure Of The Human Ionotropic Glutamate		3e-05
4gpa_A	389	High Resolution Structure Of The Glua4 N-Terminal D		2e-04
3saj_A	384	Crystal Structure Of Glutamate Receptor Glua1 Amino		2e-04
1ewk_A	490	Crystal Structure Of Metabotropic Glutamate Recepto		6e-04
3ks9_A	496	Metabotropic Glutamate Receptor Mglur1 Complexed Wi		6e-04

>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer Assembly Length = 395

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   ++  N   F V+LY
Sbjct: 60  ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 119
Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
           P    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR   A+   
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 179
Query: 118 YRNVLREIRQKEIFNLIIDTS 138
            + +L+E+++ + F++I D S
Sbjct: 180 AKPLLKEMKRGKEFHVIFDCS 200

>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge Homodimer Assembly Length = 395

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNLY 59
           A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   ++  N   F V+LY
Sbjct: 60  ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLY 119
Query: 60  PSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--ANPST 117
           P    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR   A+   
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD 179
Query: 118 YRNVLREIRQKEIFNLIIDTS 138
            + +L+E+++ + F++I D S
Sbjct: 180 AKPLLKEMKRGKEFHVIFDCS 200

>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75 Angstrom Resolution Length = 398

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR-----LDLELNSKEFSV 56
           A    C QL  GV A+FGPS       VQSIC AL+VPH++ R     LD   N   F V
Sbjct: 63  ATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLD---NKDTFYV 119
Query: 57  NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH--AN 114
           NLYP    L+ A  D+++ L W    +VY++  GL +LQEL+  P      + IR    +
Sbjct: 120 NLYPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPID 179
Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFR 147
               R +L+E+++   F +I D S T  +Q  +
Sbjct: 180 SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILK 212

>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a Length = 388

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 4   ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 63
           A  C Q   GV A+FG  D      + S C  L V  +      +  +  F + + P   
Sbjct: 54  AAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 110
Query: 64  LLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PS 116
            L  A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N      
Sbjct: 111 -LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDE 169
Query: 117 TYRNVLREIRQKEIFNLIID 136
           TYR++ +++  K+   +I+D
Sbjct: 170 TYRSLFQDLELKKERRVILD 189

>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic Dimer At 1.4 Angstrom Resolution Length = 393

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 5   TMCRQLQNGVQALFGPSDALLGPH-VQSICEALDVPHMESRLD--LELNSKEF-SVNLYP 60
           TMC+ L  GV ++ GPS +      V  IC   ++PH++   +    L    F SV+LYP
Sbjct: 62  TMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYP 121
Query: 61  SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVK----TPPTLKTEMYIRHANPS 116
           S + ++ A   +++  N+   +++  +   L +L+ELV+    +  TL   M     +P+
Sbjct: 122 SNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPT 181
Query: 117 TYRNVLREIRQKEIFNLIIDTSTT 140
               +L+EIR  ++  +IID + +
Sbjct: 182 P---LLKEIRDDKVSTIIIDANAS 202

>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  D      + S C  L V  +      +  +  F + + P    L
Sbjct: 53  FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 108
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
             A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N      TY
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 119 RNVLREIRQKEIFNLIID 136
           R++ +++  K+   +I+D
Sbjct: 169 RSLFQDLELKKERRVILD 186

>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a Length = 374

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  D      + S C  L V  +      +  +  F + + P    L
Sbjct: 51  FCSQFSRGVYAIFGFYDKKSVNAITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 106
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
             A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N      TY
Sbjct: 107 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 166
Query: 119 RNVLREIRQKEIFNLIID 136
           R++ +++  K+   +I+D
Sbjct: 167 RSLFQDLELKKERRVILD 184

>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal Domain (Ntd) Length = 376

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  D      + S C  L V  +      +  +  F + + P    L
Sbjct: 53  FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 108
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
             A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N      TY
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 119 RNVLREIRQKEIFNLIID 136
           R++ +++  K+   +I+D
Sbjct: 169 RSLFQDLELKKERRVILD 186

>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd Length = 394

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  D      + S C  L V  +      +  +  F + + P    L
Sbjct: 61  FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 116
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
             A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N      TY
Sbjct: 117 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 176
Query: 119 RNVLREIRQKEIFNLIID 136
           R++ +++  K+   +I+D
Sbjct: 177 RSLFQDLELKKERRVILD 194

>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate Receptor Glur2 Atd Region At 1.8 A Resolution Length = 388

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 11/138 (7%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  D      + S C  L V  +      +  +  F + + P    L
Sbjct: 53  FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD---L 108
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHAN----PSTY 118
             A   +I +  W K A +Y+ D GL  LQ ++ +    K   T + + + N       Y
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMY 168
Query: 119 RNVLREIRQKEIFNLIID 136
           R++ +++  K+   +I+D
Sbjct: 169 RSLFQDLELKKERRVILD 186

>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain (Ntd) Length = 389

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  D      + S C AL +  +      E  S +F + L PS   L
Sbjct: 62  FCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES-QFVLQLRPS---L 117
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHANPSTYRNVL 122
             A   ++    W     +Y+ D G   LQ +++         + + + + N  +YR +L
Sbjct: 118 RGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLL 177
Query: 123 REIRQKEIFNLIID 136
            E+ +++    +ID
Sbjct: 178 EELDRRQEKKFVID 191

>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino Terminal Domain Length = 384

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLL 65
            C Q   GV A+FG  +      + S C AL V  +     ++  S +F + L P    L
Sbjct: 60  FCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD-TSNQFVLQLRPE---L 115
Query: 66  NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLK---TEMYIRHANPSTYRNVL 122
             A   +I    W     +Y+ D GL  LQ ++ T        T + I       YR + 
Sbjct: 116 QEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLF 175
Query: 123 REIRQKEIFNLIIDTSTTHIS 143
           +++ +K+   +++D  +  ++
Sbjct: 176 QDLEKKKERLVVVDCESERLN 196

>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 14  VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSK---EFSVNLYPSQKLLNAAF 69
           +  + GP  + +   VQ++ +  D+P +  S   ++L+ K   ++ + + PS  L   A 
Sbjct: 124 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 183
Query: 70  KDVIRFLNWTKVAIVYEEDN----GLFKLQELV 98
            D+++  NWT V+ V+ E N    G+   +EL 
Sbjct: 184 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELA 216

>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 14  VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSK---EFSVNLYPSQKLLNAAF 69
           +  + GP  + +   VQ++ +  D+P +  S   ++L+ K   ++ + + PS  L   A 
Sbjct: 129 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 188
Query: 70  KDVIRFLNWTKVAIVYEEDN----GLFKLQELV 98
            D+++  NWT V+ V+ E N    G+   +EL 
Sbjct: 189 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELA 221

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	9e-31
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	7e-30
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	1e-26
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	6e-26
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	6e-26
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	5e-25
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	1e-16
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	3e-16
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	1e-06
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	4e-06
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	2e-05

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823

 Score =  115 bits (288), Expect = 9e-31
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 61
                C Q   GV A+FG  D      + S C  L V  +         +  F + + P 
Sbjct: 49  VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD 107

Query: 62  QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH-------AN 114
              L  A   +I +  W K A +Y+ D GL  LQ ++ +    K ++   +         
Sbjct: 108 ---LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKK 164

Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
             TYR++ +++  K+   +I+D     ++     V
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQV 199

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395

 Score =  110 bits (276), Expect = 7e-30
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 1   MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKE--FSVNL 58
            A    C QL  GV A+FGPS +     VQSIC AL VPH+++R   +++  +  F V+L
Sbjct: 59  EASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSL 118

Query: 59  YPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--S 116
           YP    L+ A  D+++F  W  V +VY++  GL +LQEL+K P      + IR       
Sbjct: 119 YPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTK 178

Query: 117 TYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
             + +L+E+++ + F++I D S    +   +  
Sbjct: 179 DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQA 211

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393

 Score =  102 bits (254), Expect = 1e-26
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)

Query: 1   MAEATMCRQLQNGVQALFGPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKE---FSV 56
               TMC+ L  GV ++ GPS        V  IC   ++PH++   +     +     SV
Sbjct: 58  ETTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASV 117

Query: 57  NLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPS 116
           +LYPS + ++ A   +++  N+   +++  +   L +L+ELV+     K  + +R  + S
Sbjct: 118 SLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDS 177

Query: 117 T-YRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
                +L+EIR  ++  +IID + +      R  
Sbjct: 178 RDPTPLLKEIRDDKVSTIIIDANASISHLVLRKA 211

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389

 Score = 99.9 bits (248), Expect = 6e-26
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 1   MAEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYP 60
                 C Q   GV A+FG  D +    + S C AL    +           +F + + P
Sbjct: 57  SVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFP-TDADVQFVIQMRP 115

Query: 61  SQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH----ANPS 116
           +      A   ++ +  W K   +Y+ + G   LQ +++       ++  R      +  
Sbjct: 116 AL---KGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQ 172

Query: 117 TYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
            +R ++ E+ +++    +ID     I+     V
Sbjct: 173 EFRRIIEEMDRRQEKRYLIDCEVERINTILEQV 205

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376

 Score = 99.9 bits (248), Expect = 6e-26
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 11/155 (7%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 61
                C Q   GV A+FG  D      + S C  L V  +         +  F + + P 
Sbjct: 49  VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD 107

Query: 62  QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH-------AN 114
                 A   +I +  W K A +Y+ D GL  LQ ++ +    K ++   +         
Sbjct: 108 L---KGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKK 164

Query: 115 PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
             TYR++ +++  K+   +I+D     ++     V
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQV 199

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384

 Score = 97.5 bits (242), Expect = 5e-25
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 2   AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 61
                C Q   GV A+FG  +      + S C AL V  +     ++  S +F + L P 
Sbjct: 56  MTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD-TSNQFVLQLRPE 114

Query: 62  QKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPST---Y 118
              L  A   +I    W     +Y+ D GL  LQ ++ T      ++   +   +T   Y
Sbjct: 115 ---LQEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGY 171

Query: 119 RNVLREIRQKEIFNLIIDTSTTHISQFFR 147
           R + +++ +K+   +++D  +  ++    
Sbjct: 172 RMLFQDLEKKKERLVVVDCESERLNAILG 200

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364

 Score = 74.1 bits (181), Expect = 1e-16
 Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 16/164 (9%)

Query: 2   AEATMCRQLQN-GVQALFGP---SDALLGPHVQSICEALDVPHME-----SRLDLELNSK 52
               +C  + +  +Q +          +   +  I      P +      S +  + +  
Sbjct: 51  IITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDES 110

Query: 53  EFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRH 112
                  PS +   +   +++   +W   +IV     G       +++        +   
Sbjct: 111 SMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELE 170

Query: 113 A-------NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
                          +  ++++ +   +++  +    +  F   
Sbjct: 171 EVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVA 214

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384

 Score = 73.2 bits (179), Expect = 3e-16
 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 35/183 (19%)

Query: 2   AEATMCRQLQN-GVQALF-----GPSDALLGPHVQSICEALDVPHME--SRLDLELNSKE 53
              ++C  L +  V A+       P+D L    +        +P +   +R+ +  +   
Sbjct: 53  MALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSI 112

Query: 54  FS--VNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED----NGLFKLQELVK-------- 99
               +   P        + +++R  NW  V ++  +D        KL+ L++        
Sbjct: 113 HLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKK 172

Query: 100 -----TPPTLKTEMYIRHAN--------PSTYRNVLREIRQKEIFNLIIDTSTTHISQFF 146
                             A+              +L E ++ E   +I+  S    +  +
Sbjct: 173 RNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVY 232

Query: 147 RAV 149
           ++ 
Sbjct: 233 KSA 235

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 12/155 (7%)

Query: 6   MCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE----FSVNLYP 60
           +          + GP        V  +    D+P +    L      K+        + P
Sbjct: 77  VAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAP 136

Query: 61  SQKLLNAAFKDVIRFLNWTKVAIVYEEDN-------GLFKLQELVKTPPTLKTEMYIRHA 113
           +   +      + R  +W++ A+VY +D         L  + E+ +      +       
Sbjct: 137 AYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDET 196

Query: 114 NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA 148
                 +++R I+  E   ++  +S T  S    A
Sbjct: 197 KDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVA 231

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 14/156 (8%), Positives = 49/156 (31%), Gaps = 7/156 (4%)

Query: 1   MAEATMCRQLQNG--VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKEFSVN 57
                    ++ G     +FG     +   +    +  ++  +  +     L  K+    
Sbjct: 71  KGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPY 130

Query: 58  LY---PSQKLLNAAFKDVIRFLNWTKVAIVYEEDN-GLFKLQELVKTPPTLKTEMYIRHA 113
            +   PS   +N A   +++   W +V  + ++         +L         E+    +
Sbjct: 131 FFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTES 190

Query: 114 NPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV 149
             +     +++++  ++  ++        ++ F   
Sbjct: 191 FSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCA 226

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 11  QNGVQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKE---FSVNLYPSQKLLN 66
           ++      GP        V        VP +      L +  K+    +    PS   L 
Sbjct: 75  EHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLG 134

Query: 67  AAFKDVIRFLNWTKVAIVYEEDN 89
                + R L W   A+V   D 
Sbjct: 135 DFVTALHRRLGWEHQALVLYADR 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	99.94
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	99.94
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	99.94
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	99.93
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	99.93
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	99.92
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	99.92
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	99.92
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	99.92
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	99.91
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	99.91
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	99.91
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	99.91
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	99.91
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	99.9
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	99.89
3h5l_A	419	Putative branched-chain amino acid ABC transporter	99.81
3i45_A	387	Twin-arginine translocation pathway signal protei;	99.8
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	99.78
3n0w_A	379	ABC branched chain amino acid family transporter,	99.77
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	99.76
3td9_A	366	Branched chain amino acid ABC transporter, peripl	99.76
3ipc_A	356	ABC transporter, substrate binding protein (amino;	99.74
4f06_A	371	Extracellular ligand-binding receptor; PSI-biology	99.74
3lop_A	364	Substrate binding periplasmic protein; protein str	99.73
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	99.72
3sg0_A	386	Extracellular ligand-binding receptor; structural	99.7
3snr_A	362	Extracellular ligand-binding receptor; structural	99.7
3hut_A	358	Putative branched-chain amino acid ABC transporter	99.7
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	99.7
1usg_A	346	Leucine-specific binding protein; leucine-binding	99.69
3lkb_A	392	Probable branched-chain amino acid ABC transporter	99.68
3n0x_A	374	Possible substrate binding protein of ABC transpo	99.68
4gnr_A	353	ABC transporter substrate-binding protein-branche	99.58
1pea_A	385	Amidase operon; gene regulator, receptor, binding	99.57
2h4a_A	325	YRAM (HI1655); perplasmic binding protein, lipopro	99.44
3ckm_A	327	YRAM (HI1655), LPOA; periplasmic-binding protein,	99.37
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	97.0
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	96.68
3o74_A	272	Fructose transport system repressor FRUR; dual tra	96.63
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	96.01
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	95.93
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	95.81
3c3k_A	285	Alanine racemase; structural genomics, protein str	95.61
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	95.6
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	95.44
2iks_A	293	DNA-binding transcriptional dual regulator; escher	95.35
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	95.31
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	95.28
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	95.2
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	95.1
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	95.03
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	94.93
3e61_A	277	Putative transcriptional repressor of ribose OPER;	94.77
2qu7_A	288	Putative transcriptional regulator; structural gen	94.77
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	94.68
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	94.57
2qh8_A	302	Uncharacterized protein; conserved domain protein,	94.4
3qk7_A	294	Transcriptional regulators; structural genomics, N	94.36
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	94.36
2h0a_A	276	TTHA0807, transcriptional regulator; repressor, st	94.34
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	94.33
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	94.29
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	94.28
2o20_A	332	Catabolite control protein A; CCPA, transcriptiona	94.24
3gyb_A	280	Transcriptional regulators (LACI-family transcript	94.1
2rjo_A	332	Twin-arginine translocation pathway signal protei;	94.0
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	93.94
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	93.88
3egc_A	291	Putative ribose operon repressor; structural genom	93.85
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	93.8
3bbl_A	287	Regulatory protein of LACI family; protein structu	93.77
3kke_A	303	LACI family transcriptional regulator; structural	93.65
1qpz_A	340	PURA, protein (purine nucleotide synthesis repress	93.6
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	93.52
3lft_A	295	Uncharacterized protein; ABC, ATPase, cassette, L-	93.49
3gv0_A	288	Transcriptional regulator, LACI family; transcript	93.38
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	93.16
4fe7_A	412	Xylose operon regulatory protein; HTH_ARAC, helix-	93.15
3d02_A	303	Putative LACI-type transcriptional regulator; peri	93.03
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	92.89
3k4h_A	292	Putative transcriptional regulator; structural gen	92.54
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	92.53
3cs3_A	277	Sugar-binding transcriptional regulator, LACI FAM;	92.48
3bil_A	348	Probable LACI-family transcriptional regulator; st	92.11
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	92.06
2rbg_A	126	Putative uncharacterized protein ST0493; hypotheti	91.6
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	91.08
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	90.9
3g85_A	289	Transcriptional regulator (LACI family); transcrip	90.58
3h75_A	350	Periplasmic sugar-binding domain protein; protein	90.03
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	89.36
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	88.52
3jvd_A	333	Transcriptional regulators; structural genomics, P	88.36
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	87.79
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	87.66
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	87.52
1byk_A	255	Protein (trehalose operon repressor); LACI family,	86.9
3ctp_A	330	Periplasmic binding protein/LACI transcriptional;	86.57
1jye_A	349	Lactose operon repressor; gene regulation, protein	86.28
3h5t_A	366	Transcriptional regulator, LACI family; DNA-depend	85.53
1jx6_A	342	LUXP protein; protein-ligand complex, signaling pr	85.37
3e3m_A	355	Transcriptional regulator, LACI family; structural	85.22
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	84.08
2fqx_A	318	Membrane lipoprotein TMPC; ABC transport system, l	80.58

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=99.94  E-value=2.1e-26  Score=172.97  Aligned_cols=148  Identities=35%  Similarity=0.652  Sum_probs=132.4

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      +.+..|++++++|.+||||.+|..+.+++++++.+++|+|++++. +. .+..+|+||+.|++..++.++++++++|||+
T Consensus        60 ~~~~a~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~  139 (395)
T 3h6g_A           60 ASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWK  139 (395)
T ss_dssp             HHHHHHHHHHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEEEEECHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhhhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccCceEEEecCCHHHHHHHHHHHHHHCCCe
Confidence            356789999989999999999999999999999999999998753 22 3456889999999999999999999999999


Q ss_pred             EEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ||+++|++++|...++.+.+.+++.|+++...+++.  .|+..++++|+++++++|++.+....+..+++||
T Consensus       140 ~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa  211 (395)
T 3h6g_A          140 TVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQA  211 (395)
T ss_dssp             EEEEEESSTHHHHHTHHHHTGGGTSSCEEEEEECCSSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred             EEEEEEEChhHHHHHHHHHHhhhcCCceEEEEEeCCCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHH
Confidence            999999888899889999988888899987766653  5899999999999999999999999999999885

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=99.94  E-value=2.1e-26  Score=171.88  Aligned_cols=144  Identities=22%  Similarity=0.415  Sum_probs=125.5

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+.+|+++++||.|||||.+|..+.+++++++.++||++++++..+ +..+|.+++.|.   ++.++++++++|||+||
T Consensus        58 ~~~~~~~l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~-~~~~~~~~~~~~---~~~a~~~l~~~~~w~~v  133 (389)
T 4gpa_A           58 VTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE-GESQFVLQLRPS---LRGALLSLLDHYEWNCF  133 (389)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCS-SCCSSEEECSCC---CHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccc-ccccCCccccCC---HHHHHHHHHHHcCCcEE
Confidence            56789999999999999999999999999999999999999876443 455677777776   45799999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEecC-C--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN-P--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~-~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++||+++++...++++.+.+.+.|+|+...... .  .|++++|++++++++++||++|..+.+..+++||
T Consensus       134 aii~~~d~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a  204 (389)
T 4gpa_A          134 VFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQI  204 (389)
T ss_dssp             EEEECSTTCSHHHHHHHHHHHTTTCEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHH
T ss_pred             EEEEecchhhHHHHHHHHHHHhcCceEEEEeecCCcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHH
Confidence            999999887788888888888889998776543 2  5799999999999999999999999999999875

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=99.94  E-value=4.8e-26  Score=171.28  Aligned_cols=144  Identities=20%  Similarity=0.441  Sum_probs=126.5

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+.+|++++++|.|||||.+|..+.+++++++.++||+|+++. +..+..+|.||+.|+   ++.++++++++|||+||
T Consensus        58 a~~~a~~li~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~-~~~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~v  133 (389)
T 3o21_A           58 VTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF-PTDADVQFVIQMRPA---LKGAILSLLSYYKWEKF  133 (389)
T ss_dssp             HHHHHHHHHTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC-CCSSCCSSEEECSCC---SHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCC-CCccCCceEEEEccC---HHHHHHHHHHhCCCCEE
Confidence            56788999998999999999999999999999999999998865 223455778888887   88999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEecC---C-CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN---P-STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~---~-~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++||++++|...++.+.+.+++.|+|+...+..   . .|+..+|++|+++++++|+++|+.+.+..+++||
T Consensus       134 aii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa  205 (389)
T 3o21_A          134 VYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQV  205 (389)
T ss_dssp             EEEECSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHH
T ss_pred             EEEEcCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            999976899999999988888889998876543   2 2799999999999999999999999999999885

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=99.93  E-value=6.5e-26  Score=169.50  Aligned_cols=148  Identities=8%  Similarity=0.086  Sum_probs=113.9

Q ss_pred             hHHHHHHHhh-CCcEEEEc-CCCCCcHHH--HHHhhcccCCCceeeccC-C---C-CCCcccEEEecCChhHHHHHHHHH
Q psy18065          2 AEATMCRQLQ-NGVQALFG-PSDALLGPH--VQSICEALDVPHMESRLD-L---E-LNSKEFSVNLYPSQKLLNAAFKDV   72 (149)
Q Consensus         2 ~~~~~c~~~~-~~v~aiiG-p~~s~~~~~--v~~~~~~~~iP~is~~~~-~---~-~~~~~~~~~~~p~~~~~~~ai~~l   72 (149)
                      +.+.+|+++. .+|.|||| |.++.++.+  ++++++.++||+|++++. +   + ...+||+||+.|++..++.+++++
T Consensus        51 ~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~l  130 (364)
T 3qel_B           51 IITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNI  130 (364)
T ss_dssp             HHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHH
Confidence            4678999996 57988875 555555655  999999999999999852 2   2 245799999999999999999999


Q ss_pred             HHhcCCcEEEEEeecCcchhhHHHHHh-CCCCCCceEEEE---ecC--CCchHHHH-HHHHhCCCceEEEecCchhHHHH
Q psy18065         73 IRFLNWTKVAIVYEEDNGLFKLQELVK-TPPTLKTEMYIR---HAN--PSTYRNVL-REIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        73 l~~~~W~~v~vi~~~~~~~~~l~~l~~-~~~~~~~~v~~~---~~~--~~d~~~~l-~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      +++|||+||++||+++.|...+.+.++ .....++|+.+.   ..+  ..+++..+ ++|+++++++||++|+.+.+..+
T Consensus       131 l~~fgW~~V~iI~~d~~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~l  210 (364)
T 3qel_B          131 MEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYI  210 (364)
T ss_dssp             HHHTTCCEEEEEEESCTTHHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHH
T ss_pred             HHHCCCeEEEEEEeCCccHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHH
Confidence            999999999999998655444433322 222334566542   222  25788888 79999999999999999999999


Q ss_pred             HhhC
Q psy18065        146 FRAV  149 (149)
Q Consensus       146 l~qA  149 (149)
                      ++||
T Consensus       211 l~~a  214 (364)
T 3qel_B          211 FEVA  214 (364)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=99.93  E-value=3.2e-26  Score=171.37  Aligned_cols=144  Identities=24%  Similarity=0.478  Sum_probs=112.7

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+.+|++++++|.+||||.+|..+.+++++++.++||+|++++. ..+..+|+||+.|+   ++.++++++++|||+||
T Consensus        49 a~~~~~~li~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~-~~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~v  124 (376)
T 3hsy_A           49 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD---LKGALLSLIEYYQWDKF  124 (376)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC-CCSCCTTEEECSCC---CHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCC-CcccCCceEEeCcc---HHHHHHHHHHhcCCCEE
Confidence            567899999989999999999999999999999999999998863 24566889999987   88999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEec---C----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA---N----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~---~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++||++++|...++.+.+.+++.|+++.....   +    ..|+..+|++|+++++++|+++|..+.+..+++||
T Consensus       125 aii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa  199 (376)
T 3hsy_A          125 AYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQV  199 (376)
T ss_dssp             EEEECSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHH
Confidence            99996689999999998888778888876543   2    25899999999999999999999999999999885

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=99.92  E-value=2e-25  Score=167.62  Aligned_cols=148  Identities=24%  Similarity=0.427  Sum_probs=122.8

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCc-HHHHHHhhcccCCCceeeccCC-CCCCcccE--EEecCChhHHHHHHHHHHHhcC
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALL-GPHVQSICEALDVPHMESRLDL-ELNSKEFS--VNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~-~~~v~~~~~~~~iP~is~~~~~-~~~~~~~~--~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      +.+..|++++++|.+||||.+|.. +.+++++++.+++|+|++++.. ....++++  ||+.|++..++.++++++++||
T Consensus        59 ~~~~~~~l~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g  138 (393)
T 3om0_A           59 TTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSRILKSFN  138 (393)
T ss_dssp             HHHHHHHHGGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHHHHHhCC
Confidence            356789999889999999999955 4799999999999999998643 22445666  9999999999999999999999


Q ss_pred             CcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |+||++||+++.+...++++.+.+...|+++..+.++ ..|+..++++|+++++++|+++|..+.+..+++||
T Consensus       139 ~~~vaii~~~~~~g~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a  211 (393)
T 3om0_A          139 YPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKA  211 (393)
T ss_dssp             SCCEEEEESSTTHHHHTHHHHHHHHHSSSCEEEEECC-CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred             CcEEEEEEeCchHHHHHHHHHHhhhccCCeEEEEecCCCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence            9999999998654455677666655678888776663 36899999999999999999999999999999885

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=99.92  E-value=2.7e-25  Score=171.39  Aligned_cols=138  Identities=14%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      ++|+|||||.+|..+.+++++++.+++|+|++++. +  + ...+||+||+.|++..++.++++++++|||+||++|+++
T Consensus       115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d  194 (479)
T 3sm9_A          115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE  194 (479)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence            47999999999999999999999999999999853 2  2 245799999999999999999999999999999999987


Q ss_pred             -CcchhhHHHHHhCCCCCCceEEEE-ecCC----CchHHHH-HHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         88 -DNGLFKLQELVKTPPTLKTEMYIR-HANP----STYRNVL-REIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        88 -~~~~~~l~~l~~~~~~~~~~v~~~-~~~~----~d~~~~l-~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                       ++|...++.+.+.+++.|+|+.+. .++.    .|+...+ +.|+++++++||+++....+..+++||
T Consensus       195 d~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~  263 (479)
T 3sm9_A          195 GDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA  263 (479)
T ss_dssp             SHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHH
Confidence             589899999999888899999764 3442    4688888 678899999999999999898888874

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=99.92  E-value=9.9e-25  Score=163.43  Aligned_cols=148  Identities=13%  Similarity=0.237  Sum_probs=116.7

Q ss_pred             hHHHHHH-HhhCCcEEEEc-----CCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHH
Q psy18065          2 AEATMCR-QLQNGVQALFG-----PSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKD   71 (149)
Q Consensus         2 ~~~~~c~-~~~~~v~aiiG-----p~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~   71 (149)
                      +++..|+ +++++|.||+|     |.++..+.+++++++.+++|+|++++. +  + ...++|+||+.|++..++.++++
T Consensus        53 a~~~~~~~Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~  132 (384)
T 3qek_A           53 MALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFE  132 (384)
T ss_dssp             HHHHHHHHTGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHH
Confidence            4567798 67789999999     567788899999999999999998753 2  2 24568999999999999999999


Q ss_pred             HHHhcCCcEEEEEeec-CcchhhHHHHHhCCCCCCce-----------E-----------EEEecC--CCchHHHHHHHH
Q psy18065         72 VIRFLNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTE-----------M-----------YIRHAN--PSTYRNVLREIR  126 (149)
Q Consensus        72 ll~~~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~-----------v-----------~~~~~~--~~d~~~~l~~i~  126 (149)
                      ++++|||+||++||++ ++|...++.+.+.+++.|+.           +           .+..++  ..|+..++++|+
T Consensus       133 ~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~  212 (384)
T 3qek_A          133 MMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAK  212 (384)
T ss_dssp             HHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHH
T ss_pred             HHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHH
Confidence            9999999999999997 47887777777776666642           2           223332  368999999999


Q ss_pred             hCCCceEEEecCchhHHHHHhhC
Q psy18065        127 QKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus       127 ~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++++++||++++.+.+..+++||
T Consensus       213 ~~~~~vii~~~~~~~~~~~~~~a  235 (384)
T 3qek_A          213 ELEARVIILSASEDDATAVYKSA  235 (384)
T ss_dssp             TSSCCEEEEECCHHHHHHHHHHH
T ss_pred             hcCCcEEEEECCHHHHHHHHHHH
Confidence            99999999999999999999875

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=99.92  E-value=9.6e-25  Score=166.13  Aligned_cols=145  Identities=12%  Similarity=0.185  Sum_probs=122.8

Q ss_pred             HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-C-CcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-N-SKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~-~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      +..|...+++|.+||||.+|..+.+++++++.+++|+|++++. +  ++ . .++|+||+.|++..++.++++++++|||
T Consensus        75 ~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w  154 (441)
T 1jdp_A           75 DRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHW  154 (441)
T ss_dssp             HHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCC
Confidence            3456544558999999999999999999999999999999853 2  22 2 5789999999999999999999999999


Q ss_pred             cEEEEEeec-Ccchh---hHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEE-DNGLF---KLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~-~~~~~---~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +||++||++ ++|..   .++.+.+.+++.|+|+....+.   ..|+..++++|+ +++++|++.+..+.+..+++||
T Consensus       155 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~  231 (441)
T 1jdp_A          155 SRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVA  231 (441)
T ss_dssp             CEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHH
Confidence            999999987 57777   8888888877789998765543   258999999999 8889999999998888888874

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=99.91  E-value=1.2e-24  Score=168.34  Aligned_cols=140  Identities=16%  Similarity=0.313  Sum_probs=119.9

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      .+++|.|||||.+|..+.+++++++.+++|+|++++. +  + ...+||+||+.|++..++.++++++++|||+||++|+
T Consensus       125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~  204 (496)
T 3ks9_A          125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH  204 (496)
T ss_dssp             --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEE
Confidence            3568999999999999999999999999999999853 3  2 2457999999999999999999999999999999999


Q ss_pred             ec-CcchhhHHHHHhCCCCCCceEEEE-ecC--C--CchHHHHHHHHhC--CCceEEEecCchhHHHHHhhC
Q psy18065         86 EE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--P--STYRNVLREIRQK--EIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        86 ~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~--~d~~~~l~~i~~~--~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++ ++|...++.+.+.+++.|+|+.+. .++  .  .|+..++++|+++  ++++|++++....+..+++||
T Consensus       205 ~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~  276 (496)
T 3ks9_A          205 TEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAM  276 (496)
T ss_dssp             ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHH
Confidence            87 589999999998888889999864 343  2  4789999999985  788899999888888888764

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=99.91  E-value=4.8e-24  Score=166.86  Aligned_cols=139  Identities=16%  Similarity=0.257  Sum_probs=120.0

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      +++|.|||||.+|..+.+++.+++.+++|+|++++. +  ++ ..++|+||+.|++..++.++++++++|||+||++|++
T Consensus       115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~  194 (555)
T 2e4u_A          115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS  194 (555)
T ss_dssp             CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            457999999999999999999999999999999853 2  22 3578999999999999999999999999999999998


Q ss_pred             c-CcchhhHHHHHhCCCCCCceEEEE-ecCC----CchHHHHHHHHh-CCCceEEEecCchhHHHHHhhC
Q psy18065         87 E-DNGLFKLQELVKTPPTLKTEMYIR-HANP----STYRNVLREIRQ-KEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        87 ~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~~----~d~~~~l~~i~~-~~~~~iil~~~~~~~~~il~qA  149 (149)
                      + ++|...++.+.+.+++.|+|+... .++.    .|+..++++|++ +++++||+++....+..+++||
T Consensus       195 d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~  264 (555)
T 2e4u_A          195 EGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA  264 (555)
T ss_dssp             SSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHH
T ss_pred             eChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHH
Confidence            7 688888899988888889998763 4432    478889999975 7899999999988888888764

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=99.91  E-value=4e-25  Score=165.73  Aligned_cols=144  Identities=22%  Similarity=0.398  Sum_probs=126.5

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+.+|++++++|.+|+||.+|..+.+++++++.+++|+|+++. +..+..+|.+|+.|+   ++.++++++++|||+||
T Consensus        56 a~~~~~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~-~~~~~~~~~~~~~p~---~~~a~~~~~~~~g~~~v  131 (384)
T 3saj_A           56 MTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSF-PVDTSNQFVLQLRPE---LQEALISIIDHYKWQTF  131 (384)
T ss_dssp             HHHHHHHHHHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSC-CCSSCCTTEEECSCC---CHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHhcCeEEEECCCCHHHHHHHHHHhccCCCCeEeccc-cCcCccCceEEeccc---HHHHHHHHHHHCCCcEE
Confidence            56788999998999999999999999999999999999999863 223456788999998   78999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++||++++|...++.+.+.+++.|+|+......   ..|+..+|++|+++++++|++++....+..+++||
T Consensus       132 ~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa  202 (384)
T 3saj_A          132 VYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQI  202 (384)
T ss_dssp             EEEECSTTCSHHHHHHHHHHHHHTCEEEEEEGGGCCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHH
T ss_pred             EEEEeCchhHHHHHHHHHHhhhcCceEEEEEeccCCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHH
Confidence            999977899999999988888889998765542   25799999999999999999999999999999885

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=99.91  E-value=3e-24  Score=174.02  Aligned_cols=144  Identities=24%  Similarity=0.478  Sum_probs=127.3

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEE
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKV   81 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v   81 (149)
                      +.+..|++++++|.||+||.+|..+.+++++++.+++|+|+++.. .....+|+||+.|+   ++.++++++++|||+||
T Consensus        49 a~~~~~~l~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~-~~~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v  124 (823)
T 3kg2_A           49 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD---LKGALLSLIEYYQWDKF  124 (823)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC-CSSCCSSEEECSCC---CHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccC-CCCCCceEEEeCCC---HHHHHHHHHHHCCCCEE
Confidence            567789999989999999999999999999999999999998532 23466899999999   88999999999999999


Q ss_pred             EEEeecCcchhhHHHHHhCCCCCCceEEEEec---C----CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         82 AIVYEEDNGLFKLQELVKTPPTLKTEMYIRHA---N----PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        82 ~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~---~----~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++||++++|...++.+.+.+++.|+|+.....   +    ..|+..++++|+++++++||+++..+.+..+++||
T Consensus       125 ~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a  199 (823)
T 3kg2_A          125 AYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQV  199 (823)
T ss_dssp             EEEECGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHH
T ss_pred             EEEEeCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence            99997788999999999988888999876532   2    35789999999999999999999999999999885

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=99.91  E-value=5.1e-24  Score=161.67  Aligned_cols=148  Identities=7%  Similarity=0.104  Sum_probs=129.2

Q ss_pred             hHHHHHHHhh--CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHh
Q psy18065          2 AEATMCRQLQ--NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRF   75 (149)
Q Consensus         2 ~~~~~c~~~~--~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~   75 (149)
                      +.+.+++++.  ++|.+||||.+|..+.+++++++.+++|+|++++. +  +. ..++|+||+.|++..++.++++++++
T Consensus        72 a~~~a~~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~  151 (433)
T 4f11_A           72 GLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKH  151 (433)
T ss_dssp             HHHHHHHHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHH
Confidence            4566788886  38999999999999999999999999999998753 2  22 35789999999999999999999999


Q ss_pred             cCCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         76 LNWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        76 ~~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |||++|++||++ ++|....+.+.+.+++.|+|+......+.|+.+++++|+++++++|++++....+..+++||
T Consensus       152 ~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a  226 (433)
T 4f11_A          152 YQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCA  226 (433)
T ss_dssp             TTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESSCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHH
T ss_pred             cCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCcCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHH
Confidence            999999999998 47888888899889889999876443336899999999999999999999999999999875

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=99.90  E-value=2.2e-24  Score=166.28  Aligned_cols=138  Identities=14%  Similarity=0.241  Sum_probs=109.3

Q ss_pred             CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065         12 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus        12 ~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      ++|.|||||.+|..+.+++++++.+++|+|++++. +  + ...+||+||+.|++..++.++++++++|||+||++|+++
T Consensus       116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d  195 (481)
T 3mq4_A          116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE  195 (481)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence            67999999999999999999999999999999853 3  2 245789999999999999999999999999999999987


Q ss_pred             -CcchhhHHHHHhCCCC-CCceEEEE-ecC----CC--chHHHHHHHH-hCCCceEEEecCchhHHHHHhhC
Q psy18065         88 -DNGLFKLQELVKTPPT-LKTEMYIR-HAN----PS--TYRNVLREIR-QKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        88 -~~~~~~l~~l~~~~~~-~~~~v~~~-~~~----~~--d~~~~l~~i~-~~~~~~iil~~~~~~~~~il~qA  149 (149)
                       ++|...++.+.+.+.+ .|+|+.+. .++    ..  |+...+.+|+ ++++++||+++..+.+..+++||
T Consensus       196 ~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~  267 (481)
T 3mq4_A          196 GSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAA  267 (481)
T ss_dssp             CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC---
T ss_pred             chhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHH
Confidence             5899999999988775 78998753 332    13  7889999998 57999999999999888888875

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=99.89  E-value=4.9e-23  Score=156.16  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=119.8

Q ss_pred             HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CC-CCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      ....++++ +++|.+||||.+|..+.+++++++.+++|+|++++. +  ++ ..++|+||+.|++..++.++++++++||
T Consensus        66 ~~~a~~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~  145 (435)
T 1dp4_A           66 PLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLG  145 (435)
T ss_dssp             HHHHHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCC
Confidence            34556665 468999999999999999999999999999998753 2  22 3478999999999999999999999999


Q ss_pred             CcEEEEE------eecC-cchhhHHHHHhCCCC-CCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHH
Q psy18065         78 WTKVAIV------YEED-NGLFKLQELVKTPPT-LKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFF  146 (149)
Q Consensus        78 W~~v~vi------~~~~-~~~~~l~~l~~~~~~-~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il  146 (149)
                      |+||++|      ++++ +| ..++.+.+.+.+ .|+|+......   ..|+.+++++|++ ++++|++.+....+..++
T Consensus       146 w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~  223 (435)
T 1dp4_A          146 WEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLM  223 (435)
T ss_dssp             CCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHH
T ss_pred             CcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecCchhhHHHHHHHHHh-hCceEEEecChHHHHHHH
Confidence            9999999      5543 45 667777776666 78998765443   2589999999999 899999999998888888


Q ss_pred             hhC
Q psy18065        147 RAV  149 (149)
Q Consensus       147 ~qA  149 (149)
                      +||
T Consensus       224 ~~a  226 (435)
T 1dp4_A          224 LLA  226 (435)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=99.81  E-value=2.3e-19  Score=135.56  Aligned_cols=148  Identities=11%  Similarity=0.112  Sum_probs=123.2

Q ss_pred             hHHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--------CCCcccEEEecCChhHHHHHHHHH
Q psy18065          2 AEATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--------LNSKEFSVNLYPSQKLLNAAFKDV   72 (149)
Q Consensus         2 ~~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--------~~~~~~~~~~~p~~~~~~~ai~~l   72 (149)
                      +.+..++++. ++|.+||||.+|..+.+++++++.++||+|+++..+.        ...++|+||+.|++..++.+++++
T Consensus        71 a~~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~  150 (419)
T 3h5l_A           71 VIQSAQRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKF  150 (419)
T ss_dssp             HHHHHHHHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHH
Confidence            3456778887 7999999999999999999999999999999764321        135688999999999999999999


Q ss_pred             HHhc--------CCcEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecC-c
Q psy18065         73 IRFL--------NWTKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTS-T  139 (149)
Q Consensus        73 l~~~--------~W~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~-~  139 (149)
                      ++++        +|++|++||+++ +|....+.+.+.+++.|+++... .++  ..|+..++++|++.++++|++.+. .
T Consensus       151 ~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~  230 (419)
T 3h5l_A          151 LKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYP  230 (419)
T ss_dssp             HHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCH
T ss_pred             HHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccC
Confidence            9886        999999999884 78888888888888889888654 344  368999999999999999998865 4


Q ss_pred             hhHHHHHhhC
Q psy18065        140 THISQFFRAV  149 (149)
Q Consensus       140 ~~~~~il~qA  149 (149)
                      +.+..+++|+
T Consensus       231 ~~~~~~~~~~  240 (419)
T 3h5l_A          231 QDQALFMNQF  240 (419)
T ss_dssp             HHHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence            6777888763

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=99.80  E-value=2.1e-19  Score=134.42  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=123.0

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      .+..++++. ++|.+||||.++..+.+++++++..+||+|++++. +  . ...++|+||+.|++..++.++++++.++|
T Consensus        62 ~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g  141 (387)
T 3i45_A           62 VTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLP  141 (387)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcC
Confidence            455678877 58999999999999999999999999999998642 2  1 24568999999999999999999999999


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCC--CceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTL--KTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~--~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|++||++ ++|....+.+.+.+++.  |+++.... ++  ..|+...+++|++.++++|++.+....+..+++|+
T Consensus       142 ~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~  219 (387)
T 3i45_A          142 ITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREG  219 (387)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHH
T ss_pred             CCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHH
Confidence            9999999987 47777777777776665  77775544 33  36899999999999999999999888888888874

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=99.78  E-value=2e-18  Score=128.53  Aligned_cols=147  Identities=7%  Similarity=0.008  Sum_probs=123.0

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      .+..+++++ ++|.+||||.++..+.++++++..+++|+|+++.. +  . ...++++||+.|++..++.++++++..+|
T Consensus        60 ~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g  139 (375)
T 3i09_A           60 ASKAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQG  139 (375)
T ss_dssp             HHHHHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcC
Confidence            455677887 89999999999999999999999999999998642 2  1 23468899999999999999999999999


Q ss_pred             CcEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|++|++++ +|....+.+.+.+++.|+++... .++  ..|+...+.++++.++++|++.+....+..+++|+
T Consensus       140 ~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~  215 (375)
T 3i09_A          140 GKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAA  215 (375)
T ss_dssp             CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHH
T ss_pred             CceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHH
Confidence            99999999874 67778888888777788887543 333  36899999999999999999988887888888763

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=99.77  E-value=1.2e-18  Score=130.08  Aligned_cols=147  Identities=4%  Similarity=0.021  Sum_probs=122.4

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--C-CCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--L-NSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      .+..+++++ ++|.+||||.++..+.+++.++...++|+|+++.. +.  . ..++|+||+.|++..++.++++++.++|
T Consensus        62 ~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g  141 (379)
T 3n0w_A           62 LSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKG  141 (379)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcC
Confidence            445677776 89999999999999999999999999999998642 21  1 3468899999999999999999998899


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |+++++|+++ ++|....+.+.+.+++.|+++... .++  ..|+...+++|+++++++|++.+....+..+++|+
T Consensus       142 ~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~  217 (379)
T 3n0w_A          142 YKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQA  217 (379)
T ss_dssp             CCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHH
T ss_pred             CcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHH
Confidence            9999999987 468778888888777778887643 333  36899999999999999999988877788888764

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=99.76  E-value=3.5e-18  Score=126.61  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=121.9

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      .+..++++. ++|.+||||.++..+.++..++...++|+|+++....  .+..+++||+.|++..++.++++++..+||+
T Consensus        61 ~~~~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  140 (368)
T 4eyg_A           61 KRLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIK  140 (368)
T ss_dssp             HHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCC
Confidence            345667776 7899999999999999999999999999999875321  2336889999999999999999999999999


Q ss_pred             EEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++++|++++ +|..+.+.+.+.+++.|+++... .++  ..|+...+++|++.++++|++.++...+..+++|+
T Consensus       141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~  214 (368)
T 4eyg_A          141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQF  214 (368)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHH
T ss_pred             EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHH
Confidence            999999874 67777888888777778887543 333  36899999999999999999988888888888763

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=99.76  E-value=5.8e-18  Score=125.56  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=120.8

Q ss_pred             HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-C-CCCcccEEEecCChhHHHHHHHHHH-HhcCC
Q psy18065          3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-E-LNSKEFSVNLYPSQKLLNAAFKDVI-RFLNW   78 (149)
Q Consensus         3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~-~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W   78 (149)
                      .+..++++.+ +|.+||||.++..+.+++.++...++|+|+++... . ....+++||+.|++..++.++++++ +++||
T Consensus        70 ~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~  149 (366)
T 3td9_A           70 ANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGA  149 (366)
T ss_dssp             HHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCC
Confidence            4556778875 59999999999999999999999999999987532 1 2456889999999999999999988 67899


Q ss_pred             cEEEEEee-c-CcchhhHHHHHhCCCCCCceEEEEecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYE-E-DNGLFKLQELVKTPPTLKTEMYIRHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~-~-~~~~~~l~~l~~~~~~~~~~v~~~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++||. + +++....+.+.+.+++.|+++....++  ..|+...++++++.++++|++.++...+..+++|+
T Consensus       150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~  224 (366)
T 3td9_A          150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA  224 (366)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence            99999986 3 467777777777777778887654354  36899999999999999999988888888888763

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=99.74  E-value=7.7e-18  Score=124.40  Aligned_cols=147  Identities=9%  Similarity=0.073  Sum_probs=120.1

Q ss_pred             HHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CCCCcccEEEecCChhHHHHHHHHHH-HhcCC
Q psy18065          3 EATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--ELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNW   78 (149)
Q Consensus         3 ~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W   78 (149)
                      .+..+++++++|.+||||.++..+.++..++...++|+|++... +  ....++++||+.|++..++.++++.+ +++||
T Consensus        59 ~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  138 (356)
T 3ipc_A           59 ISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKD  138 (356)
T ss_dssp             HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCC
Confidence            34567888889999999999999999999999999999997643 2  22345889999999999999999954 67899


Q ss_pred             cEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +++++|+++ +++..+.+.+.+.+++.|+++.. ..++  ..|+...++++++.+++.|++.++...+..+++|+
T Consensus       139 ~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~  213 (356)
T 3ipc_A          139 AKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQA  213 (356)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHH
Confidence            999999987 46777788888777777877643 2333  36899999999999999999999888888888763

>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*

Probab=99.74  E-value=1.2e-17  Score=124.59  Aligned_cols=143  Identities=14%  Similarity=0.056  Sum_probs=117.0

Q ss_pred             HHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          6 MCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         6 ~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      .-+++. ++|.+|+||.+|..+.++++++...++|+|+++....  ....+|+||+.|++..+..+++++++..+|++++
T Consensus        64 a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~k~va  143 (371)
T 4f06_A           64 AQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVRTSFTMFQNTVPAAKVAKQKGATKVA  143 (371)
T ss_dssp             HHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcccCCcceecccchhhhhhhhhhhhhhcCceEEE
Confidence            346665 6899999999999999999999999999999875322  2445899999999999999999999999999999


Q ss_pred             EEeec-CcchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCc-hhHHHHHhh
Q psy18065         83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTST-THISQFFRA  148 (149)
Q Consensus        83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~-~~~~~il~q  148 (149)
                      ++|++ ++|....+.+.+.+++.|.++... .++  ..|+.+++.+|+++++++|++.+.. .....+++|
T Consensus       144 ii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~  214 (371)
T 4f06_A          144 IAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKA  214 (371)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHH
T ss_pred             EEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHH
Confidence            99998 578777777777777778776543 344  3699999999999999999887754 455556554

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=99.73  E-value=1.5e-17  Score=123.37  Aligned_cols=146  Identities=8%  Similarity=0.091  Sum_probs=120.8

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHH--hhcccCCCceeeccCCC--CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQS--ICEALDVPHMESRLDLE--LNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~--~~~~~~iP~is~~~~~~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      .+..+++++ ++|.+||||.++..+.++..  ++...+||+|+++....  .+ .+++||+.|++..++.++++++..+|
T Consensus        62 ~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~l~~~g  140 (364)
T 3lop_A           62 VRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT-DPLVFPIKASYQQEIDKMITALVTIG  140 (364)
T ss_dssp             HHHHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS-CTTEECCSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc-CCcEEEeCCChHHHHHHHHHHHHHcC
Confidence            345667777 58999999999999999999  99999999999864321  12 68899999999999999999999999


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|++|+++ +++..+.+.+.+.+++.|+++.. ..++  ..|+...++++++.++++|++.++...+..+++|+
T Consensus       141 ~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~  216 (364)
T 3lop_A          141 VTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQY  216 (364)
T ss_dssp             CCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHH
T ss_pred             CceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH
Confidence            9999999987 46777888888877777877643 2333  36899999999999999999988888888888763

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=99.72  E-value=2.8e-17  Score=123.09  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=120.2

Q ss_pred             HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCcE
Q psy18065          3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWTK   80 (149)
Q Consensus         3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~~   80 (149)
                      .+..++++ +++|.+||| .++..+.++..++...+||+|+++........+++||+.|++..++.++++++.. +||++
T Consensus        65 ~~~~~~li~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~  143 (391)
T 3eaf_A           65 EEYYREFRDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQGK  143 (391)
T ss_dssp             HHHHHHHHHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHHHHHCSEE
T ss_pred             HHHHHHHHhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHHHhcCCCE
Confidence            34566788 678999999 6788888999999999999999764322125688999999999999999998866 79999


Q ss_pred             EEEEee-c-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHH--HHhCCCceEEEecCchhHHHHHhhC
Q psy18065         81 VAIVYE-E-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLRE--IRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        81 v~vi~~-~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~--i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|++ + ++|..+.+.+.+.+++.|+++.... ++  ..|+...+.+  |++.++++|++.++...+..+++|+
T Consensus       144 iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~  219 (391)
T 3eaf_A          144 LALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAM  219 (391)
T ss_dssp             EEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHH
T ss_pred             EEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHH
Confidence            999998 6 4678888888888888898876533 43  2589999999  9999999999998888888888763

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=99.70  E-value=8.9e-17  Score=119.55  Aligned_cols=146  Identities=15%  Similarity=0.114  Sum_probs=120.1

Q ss_pred             HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---C--CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---E--LNSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      .+..++++++ +|.+||||.++..+.++..++...++|+|+++...   .  ....+++||+.|++..++.++++++..+
T Consensus        78 ~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  157 (386)
T 3sg0_A           78 AQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKT  157 (386)
T ss_dssp             HHHHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhc
Confidence            3456777775 79999999999999999999999999999987522   1  2456889999999999999999999999


Q ss_pred             CCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         77 NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        77 ~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ||++|++|+++ +++..+.+.+.+.+++.|+++.. ..++  ..|+...++++++.+++.|++.++...+..+++|
T Consensus       158 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~  233 (386)
T 3sg0_A          158 GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA  233 (386)
T ss_dssp             TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred             CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence            99999999987 46777888888777777877642 2333  3689999999999999999998887777777776

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=99.70  E-value=1.3e-16  Score=117.88  Aligned_cols=147  Identities=12%  Similarity=0.137  Sum_probs=120.2

Q ss_pred             HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      .+..++++ +++|.+||||.++..+..+..++...++|+|+++.. +. ....++++|+.|++..++.++++++...||+
T Consensus        61 ~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  140 (358)
T 3hut_A           61 RTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFT  140 (358)
T ss_dssp             HHHHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCC
Confidence            34567788 678999999999988899999999999999998642 21 2233889999999999999999998878999


Q ss_pred             EEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|++|+.++ ++..+.+.+.+.+++.|+++... .++  ..|+...++++++.+++.|++.++...+..+++++
T Consensus       141 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~  214 (358)
T 3hut_A          141 SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRAL  214 (358)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHH
T ss_pred             EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHH
Confidence            999999774 67788888888877788887543 333  36899999999999999999988887788887763

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=99.70  E-value=7.1e-17  Score=119.88  Aligned_cols=146  Identities=12%  Similarity=0.030  Sum_probs=120.1

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC---CC-CCcccEEEecCChhHHHHHHHHHHHhcCC
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL---EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNW   78 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~---~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W   78 (149)
                      +...++++ ++|.+||||.++..+..+..++...++|+|+++...   .. ...+++||+.|++...+.++++++..+||
T Consensus        72 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  151 (375)
T 4evq_A           72 ELTTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGL  151 (375)
T ss_dssp             HHHHCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCC
Confidence            34556666 489999999999999999999999999999987432   11 23688999999999999999999999999


Q ss_pred             cEEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++|++|++++ ++..+.+.+.+.+++.|+++... .++  ..|+...++++++.+++.|++.++...+..+++|+
T Consensus       152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~  226 (375)
T 4evq_A          152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDY  226 (375)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHH
T ss_pred             cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence            9999999874 67788888888877788887543 333  36899999999999999999988888888888763

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=99.69  E-value=2.1e-16  Score=116.05  Aligned_cols=145  Identities=8%  Similarity=0.080  Sum_probs=115.7

Q ss_pred             HHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--CCCCcccEEEecCChhHHHHHHHHHH-HhcCCc
Q psy18065          4 ATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--ELNSKEFSVNLYPSQKLLNAAFKDVI-RFLNWT   79 (149)
Q Consensus         4 ~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~~~~~~~~~~~~p~~~~~~~ai~~ll-~~~~W~   79 (149)
                      +..+++++++|.+||||.++..+.++..++...++|+|+++.. +  ....+++++|+.|++..++..+++++ +++||+
T Consensus        60 ~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  139 (346)
T 1usg_A           60 AVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQ  139 (346)
T ss_dssp             HHHHHHHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCC
Confidence            4456777789999999998888888899999999999998642 2  12235789999999999999999988 568999


Q ss_pred             EEEEEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         80 KVAIVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        80 ~v~vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      ++++|+.++ ++..+.+.+.+.+++.|+++... .++  ..|+.+.+++|++.++++|++.+....+..++++
T Consensus       140 ~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~  212 (346)
T 1usg_A          140 RIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQ  212 (346)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHH
T ss_pred             eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHH
Confidence            999999874 56677777777777778887543 343  3588999999999999999988876777777766

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=99.68  E-value=1.2e-16  Score=119.62  Aligned_cols=146  Identities=10%  Similarity=0.132  Sum_probs=118.5

Q ss_pred             HHHHHHHhhC-CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC--C-CCcccEEEecCChhHHHHHHHHHHHh-cC
Q psy18065          3 EATMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--L-NSKEFSVNLYPSQKLLNAAFKDVIRF-LN   77 (149)
Q Consensus         3 ~~~~c~~~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~--~-~~~~~~~~~~p~~~~~~~ai~~ll~~-~~   77 (149)
                      .+..++++++ +|.+||| .++..+.++..++...+||+|+++....  . ...+++||+.|++..++.++++++.. +|
T Consensus        64 ~~~~~~li~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g  142 (392)
T 3lkb_A           64 QRFFEEAVDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKK  142 (392)
T ss_dssp             HHHHHHHHHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCC
Confidence            3456778875 8999999 5777788899999999999999764321  1 34678999999999999999998865 79


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |++|++|+++ ++|..+.+.+.+.+++.|+++.... ++  ..|+...++++++.+++.|++.++...+..+++|+
T Consensus       143 ~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~  218 (392)
T 3lkb_A          143 GAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDA  218 (392)
T ss_dssp             TCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence            9999999987 4677778888777777788875533 43  36899999999999999999999888888888763

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=99.68  E-value=2e-16  Score=117.94  Aligned_cols=135  Identities=7%  Similarity=-0.023  Sum_probs=111.9

Q ss_pred             hHHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC---CCCcccEEEecCChhHHHHHHHHHHHhc
Q psy18065          2 AEATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE---LNSKEFSVNLYPSQKLLNAAFKDVIRFL   76 (149)
Q Consensus         2 ~~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~---~~~~~~~~~~~p~~~~~~~ai~~ll~~~   76 (149)
                      +.+..++++. ++|.+||||.+|..+.+++++++.+++|+|++.+. +.   ...++|+||+.|++..+..+++.+++++
T Consensus        61 a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~  140 (374)
T 3n0x_A           61 SKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQ  140 (374)
T ss_dssp             HHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhcc
Confidence            3456788886 68999999999999999999999999999986542 21   1246899999999999999999888899


Q ss_pred             CCcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEEe-cC--CCchHHHHHHHHhCC-----CceEEEec
Q psy18065         77 NWTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIRH-AN--PSTYRNVLREIRQKE-----IFNLIIDT  137 (149)
Q Consensus        77 ~W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~-~~--~~d~~~~l~~i~~~~-----~~~iil~~  137 (149)
                      +| ++++|+++ ++|....+.+.+.+++.|+++.... ++  ..|+..++++|++++     +++|++.+
T Consensus       141 ~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~  209 (374)
T 3n0x_A          141 GV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIW  209 (374)
T ss_dssp             TE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCHHHHHHHHHHHTTCSSEEEEEECC
T ss_pred             CC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHHHHHHHHHhcCCCCCCCCEEEEEe
Confidence            99 79999987 5788888888888888898886543 43  368999999999998     88888863

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=99.58  E-value=2.8e-14  Score=105.28  Aligned_cols=144  Identities=9%  Similarity=0.096  Sum_probs=110.3

Q ss_pred             HHHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC-CCCcccEEEecCChhHHHHHHHHHHHhc-CC
Q psy18065          3 EATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE-LNSKEFSVNLYPSQKLLNAAFKDVIRFL-NW   78 (149)
Q Consensus         3 ~~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~-~W   78 (149)
                      .+..-+++. +++.+++||.+|..+.++++++...++|+|+++.. +. ....+|+||+.|++..+..+++.++... ++
T Consensus        64 ~~~a~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  143 (353)
T 4gnr_A           64 ASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSFQGKIISNYVSEKLNA  143 (353)
T ss_dssp             HHHHHHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEEECSCCHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHhhCCceEEeccccCcccceehhhhhccCcceEeecccccccccCCccccccCCCcHHHHHHHHHHHHHhcCC
Confidence            344556775 56899999999999999999999999999998753 22 3456789999999999999999988655 45


Q ss_pred             cEEEEEeecC--cchhhHHHHHhCCCCCCceEEE-EecC--CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         79 TKVAIVYEED--NGLFKLQELVKTPPTLKTEMYI-RHAN--PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        79 ~~v~vi~~~~--~~~~~l~~l~~~~~~~~~~v~~-~~~~--~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      ++++++++++  ++....+.+.+..   |..+.. ..++  ..|+...+.+|++++++.|++.+....+..+++|+
T Consensus       144 ~~~~~~~~~~~~yg~~~~~~~~~~~---g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~  216 (353)
T 4gnr_A          144 KKVVLYTDNASDYAKGIAKSFRESY---KGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQA  216 (353)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHC---CSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHH
T ss_pred             cEEEEEEcCchHHHHHHHHHHHHHc---CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHH
Confidence            5555555543  5665556665543   445443 3343  36899999999999999999999988888898874

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=99.57  E-value=1.8e-14  Score=107.64  Aligned_cols=145  Identities=11%  Similarity=-0.026  Sum_probs=114.1

Q ss_pred             HHHHHHhh-CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          4 ATMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         4 ~~~c~~~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      +..+++++ ++|.+|||+.++..+..+..++...++|+|+++........++++|+.|++...+..+++++...+|++|+
T Consensus        65 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia  144 (385)
T 1pea_A           65 LCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVV  144 (385)
T ss_dssp             HHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEE
T ss_pred             HHHHHHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccCccCCCCEEEecCChHHhHHHHHHHHHHccCcEEE
Confidence            44567775 78999999988877788889999999999997643211234678999999999999999999888999999


Q ss_pred             EEeecC-cchhhHHHHHhCCCCCCceEEEE-ecC---C-CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         83 IVYEED-NGLFKLQELVKTPPTLKTEMYIR-HAN---P-STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        83 vi~~~~-~~~~~l~~l~~~~~~~~~~v~~~-~~~---~-~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      +|+.++ ++..+.+.+.+.+++.|+++... .++   . .|+.+.+++|++.+++.|++.++...+..++++
T Consensus       145 ~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~  216 (385)
T 1pea_A          145 FIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRA  216 (385)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHH
T ss_pred             EEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHH
Confidence            999864 56677777777777778876543 232   2 478889999998888998887766677777766

>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1

Probab=99.37  E-value=2.3e-12  Score=94.50  Aligned_cols=141  Identities=10%  Similarity=-0.079  Sum_probs=109.3

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhh-cccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSIC-EALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~-~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +.+++|.+||||.+++.+.++.... ....+|+++.+........++.||+.+++..++..+++++...|++++++++++
T Consensus        54 ~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~  133 (327)
T 3ckm_A           54 AKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQ  133 (327)
T ss_dssp             HHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEES
T ss_pred             HHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcccccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecC
Confidence            3457899999999988777766654 445566665443322234577899999999999999999988899999999998


Q ss_pred             -CcchhhHHHHHhCCCCCCceEEE-EecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         88 -DNGLFKLQELVKTPPTLKTEMYI-RHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        88 -~~~~~~l~~l~~~~~~~~~~v~~-~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                       ++|....+.+.+.+++.|..+.. ..++..+....+..++.++++.|++.+....+..+.+|+
T Consensus       134 ~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~  197 (327)
T 3ckm_A          134 NDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPTELAEMKGYL  197 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEEcCHHHHHHHHHHH
Confidence             57888778888877777766543 345556777778889999999999999888888887763

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=97.00  E-value=0.045  Score=39.06  Aligned_cols=136  Identities=12%  Similarity=-0.005  Sum_probs=76.9

Q ss_pred             HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      .++..++.+||. |..+.........+...++|+|.........  +....+.+.+...+...++.+...  |-++++++
T Consensus        52 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i  129 (313)
T 2h3h_A           52 SFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDS--GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIG  129 (313)
T ss_dssp             HHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEE
T ss_pred             HHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCCc--ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            445667877774 4444332223334556799999976432211  122345677777777788877665  99999999


Q ss_pred             eec-C--cchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHHHhCC--CceEEEecCchhHHHHH
Q psy18065         85 YEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREIRQKE--IFNLIIDTSTTHISQFF  146 (149)
Q Consensus        85 ~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i~~~~--~~~iil~~~~~~~~~il  146 (149)
                      ... +  ....+.+.+.+.+++.|+.+.......   .+..+.+.++.++.  .+.|+. ++...+..++
T Consensus       130 ~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~  198 (313)
T 2h3h_A          130 TGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQA  198 (313)
T ss_dssp             ESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHH
T ss_pred             ECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHH
Confidence            865 2  245667777777766777654222211   23345555555443  344443 3333443333

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=96.68  E-value=0.042  Score=38.91  Aligned_cols=121  Identities=6%  Similarity=-0.057  Sum_probs=73.2

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcC--CcEEEE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLN--WTKVAI   83 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~--W~~v~v   83 (149)
                      .++..++.+|| .|............+...+||+|........ ........+.+.....+...++.+...+  -+++++
T Consensus        56 ~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~  135 (297)
T 3rot_A           56 SALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALV  135 (297)
T ss_dssp             HHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcCCCceEEE
Confidence            45566777766 4555444344445566789999998754321 1112334567777778888888776667  899999


Q ss_pred             Eeec-C--cchhhHHHHHhCCCCCCceEEEEecCC--CchHHHHHHHHhC
Q psy18065         84 VYEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP--STYRNVLREIRQK  128 (149)
Q Consensus        84 i~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~--~d~~~~l~~i~~~  128 (149)
                      +... +  ....+.+.+.+.+++.|+.+.......  .+..+.+.++.+.
T Consensus       136 i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  185 (297)
T 3rot_A          136 LNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKI  185 (297)
T ss_dssp             EESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHh
Confidence            9754 2  234666777776666677664433221  2334555554433

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=96.63  E-value=0.071  Score=36.94  Aligned_cols=98  Identities=8%  Similarity=-0.026  Sum_probs=63.4

Q ss_pred             HhhCCcEEEEcCCCC-CcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s-~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|-.... .....+ ..+...++|++..+.......   .-.+...+...+...++.+...|-++++++...
T Consensus        54 l~~~~vdgiIi~~~~~~~~~~~-~~~~~~~iPvV~~~~~~~~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~  129 (272)
T 3o74_A           54 FRARRCDALFVASCLPPEDDSY-RELQDKGLPVIAIDRRLDPAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGAR  129 (272)
T ss_dssp             HHHTTCSEEEECCCCCSSCCHH-HHHHHTTCCEEEESSCCCTTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred             HHHcCCCEEEEecCccccHHHH-HHHHHcCCCEEEEccCCCccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecC
Confidence            345667776654332 222233 345567999998775432222   234566777777888888877899999999865


Q ss_pred             -C--cchhhHHHHHhCCCCCCceEEE
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTEMYI  110 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~v~~  110 (149)
                       +  ....+.+.+.+.+++.|+....
T Consensus       130 ~~~~~~~~R~~gf~~~l~~~~~~~~~  155 (272)
T 3o74_A          130 PELSVSQARAGGFDEALQGYTGEVRR  155 (272)
T ss_dssp             TTSHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred             CCCccHHHHHHHHHHHHHHcCCChhe
Confidence             3  2456778888888888876543

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=96.01  E-value=0.19  Score=34.81  Aligned_cols=100  Identities=11%  Similarity=-0.012  Sum_probs=65.0

Q ss_pred             HHhhCC-cEEEEcCC-CCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc----CCcEE
Q psy18065          8 RQLQNG-VQALFGPS-DALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL----NWTKV   81 (149)
Q Consensus         8 ~~~~~~-v~aiiGp~-~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~----~W~~v   81 (149)
                      .++..+ +.+||-.. .+.........+...++|++..+......  .+...+.+.+...+...++.+...    |-+++
T Consensus        53 ~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i  130 (276)
T 3ksm_A           53 YHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGD--AHQGLVATDNYAAGQLAARALLATLDLSKERNI  130 (276)
T ss_dssp             HHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred             HHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCCC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceE
Confidence            445566 77777544 33334444455677799999987543211  222346677777888888877666    89999


Q ss_pred             EEEeec-C--cchhhHHHHHhCCCCC-CceEE
Q psy18065         82 AIVYEE-D--NGLFKLQELVKTPPTL-KTEMY  109 (149)
Q Consensus        82 ~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~  109 (149)
                      +++... +  ....+.+.+.+.+++. |+.+.
T Consensus       131 ~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~  162 (276)
T 3ksm_A          131 ALLRLRAGNASTDQREQGFLDVLRKHDKIRII  162 (276)
T ss_dssp             EECBCCTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             EEEEcCCCchhHHHHHHHHHHHHHhCCCcEEE
Confidence            999754 2  2456777777777666 76654

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=95.93  E-value=0.24  Score=34.63  Aligned_cols=137  Identities=9%  Similarity=-0.014  Sum_probs=72.2

Q ss_pred             HHhhCCcEEEEcCCC-CCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc------CCcE
Q psy18065          8 RQLQNGVQALFGPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL------NWTK   80 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~-s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~------~W~~   80 (149)
                      .+...++.++|.... ..........+...++|++.......... .+.+.+.+.+...+...++.+...      |.++
T Consensus        53 ~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~-~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~  131 (290)
T 2fn9_A           53 AIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARG-LAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKE  131 (290)
T ss_dssp             HHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSCSS-SSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred             HHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCCCC-ceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccc
Confidence            344567888776433 22222223334567999998764322111 111226667766777777776555      8899


Q ss_pred             --EEEEeec-C--cchhhHHHHHhCCCCC-CceEEEEecCC---CchHHHHHHHHhC--CCceEEEecCchhHHHHH
Q psy18065         81 --VAIVYEE-D--NGLFKLQELVKTPPTL-KTEMYIRHANP---STYRNVLREIRQK--EIFNLIIDTSTTHISQFF  146 (149)
Q Consensus        81 --v~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~~~~~~~---~d~~~~l~~i~~~--~~~~iil~~~~~~~~~il  146 (149)
                        ++++... +  ....+.+.+.+.+++. |+.+.......   .+-.+.+.++.+.  ..+.|+ .++...+..++
T Consensus       132 i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~  207 (290)
T 2fn9_A          132 IPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAM  207 (290)
T ss_dssp             EEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHH
T ss_pred             eeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHH
Confidence              6666543 2  2356677777776666 76543211111   2233455554433  344444 33444444444

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=95.81  E-value=0.12  Score=36.14  Aligned_cols=98  Identities=10%  Similarity=0.040  Sum_probs=58.3

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+.++.+||..........+..+....++|+|..+......  ++...+.+.+...+..+++.+...|-++++++...
T Consensus        58 ~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~  135 (289)
T 1dbq_A           58 MMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP  135 (289)
T ss_dssp             HHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             HHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCcc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            3445678887753332222233333333689999987533211  22235667777778888888877799999999764


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.+++.|+.
T Consensus       136 ~~~~~~~~R~~g~~~~l~~~g~~  158 (289)
T 1dbq_A          136 LERNTGAGRLAGFMKAMEEAMIK  158 (289)
T ss_dssp             ------CHHHHHHHHHHHHTTCC
T ss_pred             CccccHHHHHHHHHHHHHHCCCC
Confidence             2  3456666666655555544

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}

Probab=95.61  E-value=0.3  Score=34.20  Aligned_cols=132  Identities=8%  Similarity=-0.040  Sum_probs=73.2

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +.+.++.+||..........+..+ . .++|+|..+.......   ...+.+.+...+...++.+...|-++++++....
T Consensus        60 l~~~~vdgiI~~~~~~~~~~~~~l-~-~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~  134 (285)
T 3c3k_A           60 LSGKMVDGVITMDALSELPELQNI-I-GAFPWVQCAEYDPLST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDL  134 (285)
T ss_dssp             HHTTCCSEEEECCCGGGHHHHHHH-H-TTSSEEEESSCCTTSS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCT
T ss_pred             HHhCCCCEEEEeCCCCChHHHHHH-h-cCCCEEEEccccCCCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            345678888765433333344444 4 8999999864332112   2345666666777778877667999999998652


Q ss_pred             ---cchhhHHHHHhCCCCCCceEEE--EecCCCchHHHHHH--HHhCC--CceEEEecCchhHHHHH
Q psy18065         89 ---NGLFKLQELVKTPPTLKTEMYI--RHANPSTYRNVLRE--IRQKE--IFNLIIDTSTTHISQFF  146 (149)
Q Consensus        89 ---~~~~~l~~l~~~~~~~~~~v~~--~~~~~~d~~~~l~~--i~~~~--~~~iil~~~~~~~~~il  146 (149)
                         ....+.+.+.+.+++.|+.+.+  ...+..+-.+.+.+  +.+..  .+.|+ .++...+..++
T Consensus       135 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~  200 (285)
T 3c3k_A          135 AYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAI  200 (285)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHH
Confidence               2345556665554444443221  12223444556666  55543  44444 33444444333

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=95.60  E-value=0.11  Score=36.33  Aligned_cols=97  Identities=14%  Similarity=0.064  Sum_probs=59.8

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+.++.+||..........+..+....++|++..+......  . ...+.+.+...+...++.+...|.++++++...
T Consensus        72 ~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~  148 (296)
T 3brq_A           72 YLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKN--S-SHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS  148 (296)
T ss_dssp             HHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSS--G-GGEECCCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             HHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCCC--C-CCEEEEchHHHHHHHHHHHHHCCCceEEEEcCC
Confidence            3445678888764443333444443332799999976433211  1 234566666667777887766799999999865


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  .+..+.+.+.+.+++.|+.
T Consensus       149 ~~~~~~~~R~~gf~~~l~~~g~~  171 (296)
T 3brq_A          149 MDSPTSIERLAGYKDALAQHGIA  171 (296)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCccHHHHHHHHHHHHHHcCCC
Confidence             2  2445666666665555654

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=95.44  E-value=0.2  Score=35.33  Aligned_cols=99  Identities=7%  Similarity=-0.095  Sum_probs=59.9

Q ss_pred             HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      .+...++.+||- |............+...++|+|.........  +....+.+.+...+...++.+...  |-++++++
T Consensus        56 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i  133 (305)
T 3g1w_A           56 QAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVI  133 (305)
T ss_dssp             HHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            344567777664 4333322333344556799999987533211  112345677777888888877766  99999999


Q ss_pred             eecCc--chhhHHHHHhCCCCCCceE
Q psy18065         85 YEEDN--GLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        85 ~~~~~--~~~~l~~l~~~~~~~~~~v  108 (149)
                      ...+.  ...+.+.+.+.+++.|..+
T Consensus       134 ~~~~~~~~~~R~~gf~~~l~~~~~~~  159 (305)
T 3g1w_A          134 TLPNQLNHQERTTGFKETLEAEFPAI  159 (305)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHHCTTE
T ss_pred             eCCCcccHHHHHHHHHHHHHhhCCCC
Confidence            85432  3456666666655444433

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=95.35  E-value=0.45  Score=33.37  Aligned_cols=97  Identities=10%  Similarity=-0.008  Sum_probs=60.2

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.+||..........+...+...++|++.........  . ...+...+...+...++.+...|.++++++...
T Consensus        71 ~l~~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~  147 (293)
T 2iks_A           71 HLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDRE--H-FTSVVGADQDDAEMLAEELRKFPAETVLYLGAL  147 (293)
T ss_dssp             HHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCCTT--T-CEEEEECHHHHHHHHHHHHHTSCCSSEEEEEEC
T ss_pred             HHHHcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccCcC--C-CCEEEecCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence            3445678877754332222222233556789999876532211  1 234666776677778887777799999999865


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.+++.|..
T Consensus       148 ~~~~~~~~R~~Gf~~~l~~~g~~  170 (293)
T 2iks_A          148 PELSVSFLREQGFRTAWKDDPRE  170 (293)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccccHHHHHHHHHHHHHHcCCC
Confidence             3  2356677777776666653

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=95.31  E-value=0.18  Score=36.31  Aligned_cols=96  Identities=15%  Similarity=0.078  Sum_probs=63.4

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.++|-.........+...+...++|++..+........+   .+...+..-+...++.+...|-++++++... 
T Consensus       115 l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~  191 (338)
T 3dbi_A          115 LLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSM  191 (338)
T ss_dssp             HHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred             HHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            445678887765444445566777888899999877543222222   3566766677777888877899999999764 


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      +  ....+.+.+.+.+++.|+.
T Consensus       192 ~~~~~~~R~~Gf~~al~~~g~~  213 (338)
T 3dbi_A          192 DSPTSIERLAGYKDALAQHGIA  213 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCccHHHHHHHHHHHHHHCCCC
Confidence            2  2345666666665555654

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=95.28  E-value=0.21  Score=35.05  Aligned_cols=127  Identities=6%  Similarity=-0.052  Sum_probs=71.5

Q ss_pred             HhhCCcEEEEcCCC-CCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCC--cEEEEEe
Q psy18065          9 QLQNGVQALFGPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNW--TKVAIVY   85 (149)
Q Consensus         9 ~~~~~v~aiiGp~~-s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W--~~v~vi~   85 (149)
                      +...++.+||--.. ..........+...++|+|.........  ...-.+.+.....+...++.+...|-  ++++++.
T Consensus        65 l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~  142 (304)
T 3gbv_A           65 VIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA--PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFR  142 (304)
T ss_dssp             HHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS--CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEE
T ss_pred             HHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC--CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            44567777764433 3223333444566799999987533211  11245667777788888888877777  9999997


Q ss_pred             ec-----C--cchhhHHHHHhCCCCCCceEEE--E---ecCCCchHHHHHHHHhC--CCceEEEec
Q psy18065         86 EE-----D--NGLFKLQELVKTPPTLKTEMYI--R---HANPSTYRNVLREIRQK--EIFNLIIDT  137 (149)
Q Consensus        86 ~~-----~--~~~~~l~~l~~~~~~~~~~v~~--~---~~~~~d~~~~l~~i~~~--~~~~iil~~  137 (149)
                      ..     +  ....+.+.+.+.+++.|..+..  .   ..+..+-.+.+.++.++  ..+.|+...
T Consensus       143 ~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~  208 (304)
T 3gbv_A          143 KIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFN  208 (304)
T ss_dssp             EEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESS
T ss_pred             ecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence            32     1  2345666666665554433222  1   12223445555555443  344554433

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=95.20  E-value=0.55  Score=33.55  Aligned_cols=99  Identities=6%  Similarity=0.056  Sum_probs=59.9

Q ss_pred             HHhhCCcEEEEcCCCCCcH-HHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc--CCcEEEEE
Q psy18065          8 RQLQNGVQALFGPSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL--NWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~-~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~--~W~~v~vi   84 (149)
                      .+++.++.+||........ ......+...++|+|.........  +....+.+.+...+...++.+...  |.++++++
T Consensus        57 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i  134 (325)
T 2x7x_A           57 YFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVEL  134 (325)
T ss_dssp             HHHHTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSSS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred             HHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCCc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEE
Confidence            3456778888865443221 122333455789999876432211  122345667766777777766543  89999999


Q ss_pred             eec-C--cchhhHHHHHhCCCCC-CceE
Q psy18065         85 YEE-D--NGLFKLQELVKTPPTL-KTEM  108 (149)
Q Consensus        85 ~~~-~--~~~~~l~~l~~~~~~~-~~~v  108 (149)
                      ... +  ....+.+.+.+.+++. |+.+
T Consensus       135 ~~~~~~~~~~~R~~Gf~~al~~~pg~~~  162 (325)
T 2x7x_A          135 TGLSGSTPAMERHQGFMAAISKFPDIKL  162 (325)
T ss_dssp             ESCTTSHHHHHHHHHHHHHHHTCTEEEE
T ss_pred             ECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence            864 2  2346667777766566 6654

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=95.10  E-value=0.55  Score=33.01  Aligned_cols=99  Identities=9%  Similarity=0.037  Sum_probs=60.5

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D   88 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~   88 (149)
                      ...++.++|--....... ....+...++|+|..+......... ...+...+..-+...++.+...|-++++++... +
T Consensus        65 ~~~~vdGiI~~~~~~~~~-~~~~l~~~~iPvV~i~~~~~~~~~~-~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~  142 (295)
T 3hcw_A           65 KQRMVDAFILLYSKENDP-IKQMLIDESMPFIVIGKPTSDIDHQ-FTHIDNDNILASENLTRHVIEQGVDELIFITEKGN  142 (295)
T ss_dssp             HTTCCSEEEESCCCTTCH-HHHHHHHTTCCEEEESCCCSSGGGG-SCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSC
T ss_pred             HhCCcCEEEEcCcccChH-HHHHHHhCCCCEEEECCCCccccCC-ceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCcc
Confidence            346777766433322222 3334566799999987533211101 234556666667777887766799999999865 3


Q ss_pred             --cchhhHHHHHhCCCCCCceEEE
Q psy18065         89 --NGLFKLQELVKTPPTLKTEMYI  110 (149)
Q Consensus        89 --~~~~~l~~l~~~~~~~~~~v~~  110 (149)
                        ....+.+.+.+.+++.|+.+..
T Consensus       143 ~~~~~~R~~Gf~~al~~~g~~~~~  166 (295)
T 3hcw_A          143 FEVSKDRIQGFETVASQFNLDYQI  166 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             chhHHHHHHHHHHHHHHcCCCeeE
Confidence              2456677777776667776543

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=95.03  E-value=0.48  Score=33.80  Aligned_cols=93  Identities=12%  Similarity=-0.019  Sum_probs=54.2

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh---cCCcEEEE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF---LNWTKVAI   83 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~---~~W~~v~v   83 (149)
                      .++.+++.+|| .|..+.....+...+...+||+|.+........ ...+-........+...++.+..   .|-+++++
T Consensus        55 ~li~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~  133 (316)
T 1tjy_A           55 NFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAF  133 (316)
T ss_dssp             HHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCGGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCCCCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEE
Confidence            45567887754 565554433444456678999999864332111 12222256666667777776644   46889999


Q ss_pred             Eeec-C--cchhhHHHHHhCC
Q psy18065         84 VYEE-D--NGLFKLQELVKTP  101 (149)
Q Consensus        84 i~~~-~--~~~~~l~~l~~~~  101 (149)
                      +... +  ....+.+.+.+.+
T Consensus       134 i~g~~~~~~~~~r~~g~~~~l  154 (316)
T 1tjy_A          134 FYSSPTVTDQNQWVKEAKAKI  154 (316)
T ss_dssp             EESCSSCHHHHHHHHHHHHHH
T ss_pred             EEcCCCChhHHHHHHHHHHHH
Confidence            9754 2  2345555555544

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=94.93  E-value=0.6  Score=32.56  Aligned_cols=119  Identities=10%  Similarity=0.106  Sum_probs=67.6

Q ss_pred             HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-c-CCc-----
Q psy18065          8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-L-NWT-----   79 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~-~W~-----   79 (149)
                      .+...++.+||- |............+...++|+|..+......  +....+.+.....+...++.+.. + |-+     
T Consensus        59 ~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~  136 (293)
T 3l6u_A           59 EFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD--AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTG  136 (293)
T ss_dssp             HHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT--TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCE
T ss_pred             HHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC--cceeEEecCHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            344566666654 3333332233344556799999987533211  12345666776677777776654 4 545     


Q ss_pred             EEEEEeec-C--cchhhHHHHHhCCCCC-CceEEEEecCC---CchHHHHHHHHhC
Q psy18065         80 KVAIVYEE-D--NGLFKLQELVKTPPTL-KTEMYIRHANP---STYRNVLREIRQK  128 (149)
Q Consensus        80 ~v~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~~~~~~~---~d~~~~l~~i~~~  128 (149)
                      +++++... +  ....+.+.+.+.+++. |+.+.......   .+-.+.+.++.+.
T Consensus       137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~  192 (293)
T 3l6u_A          137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDS  192 (293)
T ss_dssp             EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHh
Confidence            99999754 2  2456777787777776 77654332222   2334455555444

>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}

Probab=94.77  E-value=0.4  Score=33.24  Aligned_cols=94  Identities=9%  Similarity=-0.014  Sum_probs=53.8

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.+||-..  .....+...+...++|+|..+......  .   .+.+.+...+...++.+...|-++++++... 
T Consensus        60 l~~~~~dgiIi~~--~~~~~~~~~l~~~~iPvV~~~~~~~~~--~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~  132 (277)
T 3e61_A           60 FVSHNCTGMISTA--FNENIIENTLTDHHIPFVFIDRINNEH--N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENL  132 (277)
T ss_dssp             HHHTTCSEEEECG--GGHHHHHHHHHHC-CCEEEGGGCC--------------HHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred             HHhCCCCEEEEec--CChHHHHHHHHcCCCCEEEEeccCCCC--C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence            3456777776543  223333314566799999987543211  1   5667777778888888877899999999865 


Q ss_pred             C--cchhhHHHHHhCCCCCCceEE
Q psy18065         88 D--NGLFKLQELVKTPPTLKTEMY  109 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~v~  109 (149)
                      +  ....+.+.+.+.+++.|+.+.
T Consensus       133 ~~~~~~~R~~gf~~~l~~~~~~~~  156 (277)
T 3e61_A          133 LIDAFHQRVQGIKYILDQQRIDYK  156 (277)
T ss_dssp             TSHHHHHHHHHHHHHHHC---CEE
T ss_pred             CCccHHHHHHHHHHHHHHcCCCcc
Confidence            2  234667777777666676554

>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}

Probab=94.77  E-value=0.09  Score=36.88  Aligned_cols=94  Identities=10%  Similarity=0.004  Sum_probs=57.9

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|..........+..+   .++|+|..+......   ....+.+.+...+...++.+...|-++++++...
T Consensus        58 ~l~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~~---~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~  131 (288)
T 2qu7_A           58 TFVSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELEST---SLPSITVDNEEAAYIATKRVLESTCKEVGLLLAN  131 (288)
T ss_dssp             HHHHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSSC---CCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECC
T ss_pred             HHHHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCCC---CCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecC
Confidence            3446778888865443222223333   789999876533211   1235566777778888888877799999999864


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.+++.|+.
T Consensus       132 ~~~~~~~~R~~gf~~~l~~~g~~  154 (288)
T 2qu7_A          132 PNISTTIGRKNGYNKAISEFDLN  154 (288)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCC
Confidence             3  2345666666655445543

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=94.68  E-value=0.7  Score=32.15  Aligned_cols=98  Identities=3%  Similarity=-0.032  Sum_probs=60.6

Q ss_pred             HHhhCCcEEEEcCCCCCcH-HHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cC-CcEEEEE
Q psy18065          8 RQLQNGVQALFGPSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LN-WTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~-~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~-W~~v~vi   84 (149)
                      .+.+.++.++|........ ......+...++|+|..+.....  .+....+.+.+...+...++.+.. .| -++++++
T Consensus        60 ~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i  137 (289)
T 3brs_A           60 EAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVI  137 (289)
T ss_dssp             HHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             HHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEE
Confidence            3445678887764433222 12333455679999987643221  122345677777777878887755 46 9999999


Q ss_pred             eec-C--cchhhHHHHHhCCCCCCce
Q psy18065         85 YEE-D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        85 ~~~-~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      ... +  ....+.+.+.+.+++.|..
T Consensus       138 ~~~~~~~~~~~R~~gf~~~l~~~g~~  163 (289)
T 3brs_A          138 SFVKNSKTAMDREEGLKIGLSDDSNK  163 (289)
T ss_dssp             ESCTTSHHHHHHHHHHHHHHGGGGGG
T ss_pred             ECCCCCccHHHHHHHHHHHHHhCCCc
Confidence            864 3  2356677777766666654

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=94.57  E-value=0.73  Score=31.92  Aligned_cols=92  Identities=9%  Similarity=0.029  Sum_probs=61.0

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.+||-..... . .....+...++|+|..+........   -.+......-+...++.+...|-++++++....
T Consensus        59 l~~~~vdgiIi~~~~~-~-~~~~~l~~~~iPvV~i~~~~~~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~  133 (276)
T 3jy6_A           59 IGSRGFDGLILQSFSN-P-QTVQEILHQQMPVVSVDREMDACPW---PQVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL  133 (276)
T ss_dssp             HHTTTCSEEEEESSCC-H-HHHHHHHTTSSCEEEESCCCTTCSS---CEEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred             HHhCCCCEEEEecCCc-H-HHHHHHHHCCCCEEEEecccCCCCC---CEEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence            3455677766544433 3 3444466689999998753322222   245667777788888888878999999998753


Q ss_pred             --c--chhhHHHHHhCCCCCC
Q psy18065         89 --N--GLFKLQELVKTPPTLK  105 (149)
Q Consensus        89 --~--~~~~l~~l~~~~~~~~  105 (149)
                        .  ...+.+.+.+.+++.+
T Consensus       134 ~~~~~~~~R~~gf~~~l~~~~  154 (276)
T 3jy6_A          134 ELSRTRQERYRGILAAAQDVD  154 (276)
T ss_dssp             TTCHHHHHHHHHHHTTCSEEE
T ss_pred             CCCchHHHHHHHHHHHHHhCC
Confidence              2  2567788888877664

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=94.36  E-value=0.88  Score=31.93  Aligned_cols=93  Identities=12%  Similarity=-0.033  Sum_probs=58.0

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC-c
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED-N   89 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~-~   89 (149)
                      ..++.+||--........+ ..+...++|+|..+.......   .-.+...+..-+...++.+...|-++++++.... .
T Consensus        63 ~~~vdGiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~  138 (294)
T 3qk7_A           63 TRRVDALIVAHTQPEDFRL-QYLQKQNFPFLALGRSHLPKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARI  138 (294)
T ss_dssp             HTCCSEEEECSCCSSCHHH-HHHHHTTCCEEEESCCCCSSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred             cCCCCEEEEeCCCCChHHH-HHHHhCCCCEEEECCCCCCCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCccc
Confidence            4567776644332222333 345667999999875432222   2346667767777888888778999999998653 2


Q ss_pred             --chhhHHHHHhCCCCCCce
Q psy18065         90 --GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        90 --~~~~l~~l~~~~~~~~~~  107 (149)
                        ...+.+.+.+.+++.|+.
T Consensus       139 ~~~~~R~~Gf~~al~~~g~~  158 (294)
T 3qk7_A          139 SYVDQRLQGYVQTMSEAGLM  158 (294)
T ss_dssp             HHHHHHHHHHHHHHHTTTCC
T ss_pred             chHHHHHHHHHHHHHHCCCC
Confidence              345666676666555543

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=94.36  E-value=0.48  Score=33.23  Aligned_cols=95  Identities=9%  Similarity=-0.003  Sum_probs=60.7

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.+||-.........+..+ .. ++|+|..+.......   .-.+...+..-+...++.+...|-++++++...
T Consensus        61 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~-~iPvV~i~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~  135 (289)
T 3k9c_A           61 ALMRERCEAAILLGTRFDTDELGAL-AD-RVPALVVARASGLPG---VGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA  135 (289)
T ss_dssp             HHTTTTEEEEEEETCCCCHHHHHHH-HT-TSCEEEESSCCSSTT---SEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred             HHHhCCCCEEEEECCCCCHHHHHHH-Hc-CCCEEEEcCCCCCCC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            3445678887754443344455544 44 999999775332222   234666766677788888877899999999865


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      .  ....+.+.+.+.+++.|..
T Consensus       136 ~~~~~~~R~~Gf~~al~~~g~~  157 (289)
T 3k9c_A          136 DAPGGADRRAGFLAAMDRHGLS  157 (289)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCG
T ss_pred             CCccHHHHHHHHHHHHHHCCCC
Confidence            2  2345666677666666654

>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=94.34  E-value=0.33  Score=33.62  Aligned_cols=93  Identities=12%  Similarity=-0.016  Sum_probs=53.9

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.++|..........+ ..+...++|++..+.... .    ...+...+...+...++.+...|-++++++....
T Consensus        51 l~~~~vdgiI~~~~~~~~~~~-~~~~~~~iPvV~~~~~~~-~----~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~  124 (276)
T 2h0a_A           51 TLAYLTDGLILASYDLTERFE-EGRLPTERPVVLVDAQNP-R----YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEE  124 (276)
T ss_dssp             ---CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-T----SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCS
T ss_pred             HHhCCCCEEEEecCCCCHHHH-HHHhhcCCCEEEEeccCC-C----CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            345667777653332222233 334567899998764332 1    3456666666777888888777999999997643


Q ss_pred             -------cch-hhHHHHHhCCCCCCce
Q psy18065         89 -------NGL-FKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 -------~~~-~~l~~l~~~~~~~~~~  107 (149)
                             ... .+.+.+.+.+++.|+.
T Consensus       125 ~~~~~~~~~~~~R~~gf~~~l~~~g~~  151 (276)
T 2h0a_A          125 PDRAFRRTVFAERMAGFQEALKEAGRP  151 (276)
T ss_dssp             CCC---CCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccccchhHHHHHHHHHHHHHHcCCC
Confidence                   234 5666666665555543

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=94.33  E-value=0.42  Score=33.31  Aligned_cols=96  Identities=5%  Similarity=-0.071  Sum_probs=61.0

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh--cCCcEEEEE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF--LNWTKVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~--~~W~~v~vi   84 (149)
                      .+...++.+|| .|..+.........+...++|+|..+.... .   ..-.+.......+...++.+..  -|-++++++
T Consensus        56 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i  131 (291)
T 3l49_A           56 TLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-H---AINNTTSNNYSIGAELALQMVADLGGKGNVLVF  131 (291)
T ss_dssp             HHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-T---CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-C---cCceEecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence            34456777777 444433444445556677999999875332 1   1235667777778888887766  799999999


Q ss_pred             eec-Cc--chhhHHHHHhCCCCC-Cce
Q psy18065         85 YEE-DN--GLFKLQELVKTPPTL-KTE  107 (149)
Q Consensus        85 ~~~-~~--~~~~l~~l~~~~~~~-~~~  107 (149)
                      ... +.  ...+.+.+.+.+++. |+.
T Consensus       132 ~~~~~~~~~~~R~~gf~~~l~~~~~~~  158 (291)
T 3l49_A          132 NGFYSVPVCKIRYDQMKYVLEAFPDVK  158 (291)
T ss_dssp             CSCTTSHHHHHHHHHHHHHHHTCTTEE
T ss_pred             eCCCCCchHHHHHHHHHHHHHHCCCCE
Confidence            754 22  345666677666555 454

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=94.29  E-value=0.66  Score=32.32  Aligned_cols=96  Identities=8%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             HhhCCcEEEEcCCC-CC---cHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEE
Q psy18065          9 QLQNGVQALFGPSD-AL---LGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIV   84 (149)
Q Consensus         9 ~~~~~v~aiiGp~~-s~---~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi   84 (149)
                      +...++.++|-... +.   ........+...++|+|..+........   -.+......-+...++.+...|-++++++
T Consensus        67 l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~---~~V~~d~~~~~~~a~~~L~~~G~~~i~~i  143 (298)
T 3tb6_A           67 LLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAA---PSFTLDDVKGGMMAAEHLLSLGHTHMMGI  143 (298)
T ss_dssp             HHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSS---CEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCCCC---CEEEeCcHHHHHHHHHHHHHCCCCcEEEE
Confidence            34567777664333 21   2333344456679999998754322222   23556666778888888877899999999


Q ss_pred             eecCc--chhhHHHHHhCCCCCCce
Q psy18065         85 YEEDN--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        85 ~~~~~--~~~~l~~l~~~~~~~~~~  107 (149)
                      ...+.  ...+.+.+.+.+++.|+.
T Consensus       144 ~~~~~~~~~~R~~gf~~~l~~~g~~  168 (298)
T 3tb6_A          144 FKADDTQGVKRMNGFIQAHRERELF  168 (298)
T ss_dssp             EESSSHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCCccHHHHHHHHHHHHHHcCCC
Confidence            86532  345566666655555543

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=94.28  E-value=0.66  Score=32.49  Aligned_cols=96  Identities=14%  Similarity=0.013  Sum_probs=58.7

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+.++.+||-.........+..+ ...++|+|..+.......   ...+.+.+...+...++.+...|.++++++...
T Consensus        67 ~l~~~~vdgiIi~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~  142 (289)
T 2fep_A           67 TMLGKQVDGIVFMGGNITDEHVAEF-KRSPVPIVLAASVEEQEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGP  142 (289)
T ss_dssp             HHHHTTCSEEEECCSCCCHHHHHHH-HHSSSCEEEESCCCTTCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESC
T ss_pred             HHHhCCCCEEEEecCCCCHHHHHHH-HhcCCCEEEEccccCCCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            3445678877754433333444443 467899999865332112   234566776777788888777799999999864


Q ss_pred             C-c---chhhHHHHHhCCCCCCce
Q psy18065         88 D-N---GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~-~---~~~~l~~l~~~~~~~~~~  107 (149)
                      . .   ...+.+.+.+.+++.|+.
T Consensus       143 ~~~~~~~~~R~~Gf~~al~~~g~~  166 (289)
T 2fep_A          143 MAEPINRSKKLQGYKRALEEANLP  166 (289)
T ss_dssp             TTSHHHHTTHHHHHHHHHHHTTCC
T ss_pred             ccccccHHHHHHHHHHHHHHcCCC
Confidence            3 2   345566666555444543

>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}

Probab=94.24  E-value=0.66  Score=33.22  Aligned_cols=95  Identities=9%  Similarity=-0.077  Sum_probs=58.3

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.++|..........+..+ ...++|++..+.......   ...+.+.+..-+...++.+...|-++++++....
T Consensus       115 l~~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~  190 (332)
T 2o20_A          115 FLSKQVDGIVYMGSSLDEKIRTSL-KNSRTPVVLVGTIDGDKE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSL  190 (332)
T ss_dssp             HHHTTCSEEEECSSCCCHHHHHHH-HHHCCCEEEESCCCTTSC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCT
T ss_pred             HHhCCCCEEEEeCCCCCHHHHHHH-HhCCCCEEEEccccCCCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            445678887764433333344443 467899998764322112   2245666666677778877777999999998652


Q ss_pred             ---cchhhHHHHHhCCCCCCce
Q psy18065         89 ---NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 ---~~~~~l~~l~~~~~~~~~~  107 (149)
                         ....+.+.+.+.+++.|+.
T Consensus       191 ~~~~~~~R~~Gf~~al~~~g~~  212 (332)
T 2o20_A          191 KDVENTERMVGYQEALLEANIE  212 (332)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccHHHHHHHHHHHHHHcCCC
Confidence               2345666666655555543

>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}

Probab=94.10  E-value=0.17  Score=35.18  Aligned_cols=93  Identities=11%  Similarity=0.037  Sum_probs=56.1

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCC-CCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~-~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.+|| -........+..    .++|+|..+... .....+   .+.+.....+...++.+...|-++++++...
T Consensus        56 l~~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~  127 (280)
T 3gyb_A           56 ALSMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRITQASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVG  127 (280)
T ss_dssp             HHTTCCSEEE-EESCC------------CCCEEEESCCCSSSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred             HHhCCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCCCCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            4456788888 322222233322    899999987543 222223   3556666778888888877899999999875


Q ss_pred             C-cchhhHHHHHhCCCCCCceEE
Q psy18065         88 D-NGLFKLQELVKTPPTLKTEMY  109 (149)
Q Consensus        88 ~-~~~~~l~~l~~~~~~~~~~v~  109 (149)
                      . ....+.+.+.+.+++.|..+.
T Consensus       128 ~~~~~~R~~gf~~~l~~~~~~~~  150 (280)
T 3gyb_A          128 SGAGLRRFESFEATMRAHGLEPL  150 (280)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             CchHHHHHHHHHHHHHHcCcCCC
Confidence            3 245566667766666665543

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=94.00  E-value=1.1  Score=31.92  Aligned_cols=102  Identities=7%  Similarity=-0.086  Sum_probs=63.6

Q ss_pred             HHhhCC--cEEEEcCCCCCcH-HHHHHhhcccCCCceeeccCCCC----CCc-ccEEEecCChhHHHHHHHHHHHh--cC
Q psy18065          8 RQLQNG--VQALFGPSDALLG-PHVQSICEALDVPHMESRLDLEL----NSK-EFSVNLYPSQKLLNAAFKDVIRF--LN   77 (149)
Q Consensus         8 ~~~~~~--v~aiiGp~~s~~~-~~v~~~~~~~~iP~is~~~~~~~----~~~-~~~~~~~p~~~~~~~ai~~ll~~--~~   77 (149)
                      .+.+.+  +.+||........ ......+...++|+|........    +.. +....+.+.+...+...++.+..  -|
T Consensus        56 ~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G  135 (332)
T 2rjo_A           56 ALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGG  135 (332)
T ss_dssp             HHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCC
Confidence            344567  8888764433222 12333455678999987643221    011 23456777877778888887755  69


Q ss_pred             CcEEEEEeec-C--cchhhHHHHHhCCCCC-CceEE
Q psy18065         78 WTKVAIVYEE-D--NGLFKLQELVKTPPTL-KTEMY  109 (149)
Q Consensus        78 W~~v~vi~~~-~--~~~~~l~~l~~~~~~~-~~~v~  109 (149)
                      -++++++... +  ....+.+.+.+.+++. |+.+.
T Consensus       136 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~  171 (332)
T 2rjo_A          136 KGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL  171 (332)
T ss_dssp             CEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred             CCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence            9999999864 3  2456677777766666 76553

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=93.94  E-value=1.1  Score=31.35  Aligned_cols=95  Identities=6%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.++|..........+.. +...++|+|..+.......   ...+.+.+...+...++.+...|-++++++...
T Consensus        62 ~l~~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~  137 (290)
T 2rgy_A           62 FLIGRDCDGVVVISHDLHDEDLDE-LHRMHPKMVFLNRAFDALP---DASFCPDHRRGGELAAATLIEHGHRKLAVISGP  137 (290)
T ss_dssp             HHHHTTCSEEEECCSSSCHHHHHH-HHHHCSSEEEESSCCTTSG---GGEECCCHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             HHHhcCccEEEEecCCCCHHHHHH-HhhcCCCEEEEccccCCCC---CCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence            344567888776443333334443 4457999999765332111   224566766677778887776799999999865


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  ....+.+.+.+.+++.|+
T Consensus       138 ~~~~~~~~R~~Gf~~al~~~g~  159 (290)
T 2rgy_A          138 FTASDNVERLDGFFDELARHGI  159 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCccHHHHHHHHHHHHHHcCC
Confidence             2  234566666666555554

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=93.88  E-value=1.1  Score=31.31  Aligned_cols=135  Identities=13%  Similarity=0.033  Sum_probs=77.1

Q ss_pred             HHhhCCcEEEE-cCCCCCc-HHHHHHhhcccCCCceeeccCCC---CCCcccEEEecCChhHHHHHHHHHHHhcC-----
Q psy18065          8 RQLQNGVQALF-GPSDALL-GPHVQSICEALDVPHMESRLDLE---LNSKEFSVNLYPSQKLLNAAFKDVIRFLN-----   77 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~-~~~v~~~~~~~~iP~is~~~~~~---~~~~~~~~~~~p~~~~~~~ai~~ll~~~~-----   77 (149)
                      .++..++.+|| .|..... ...+.. +. .++|+|.......   .+.......+.+.....+...++.+...+     
T Consensus        58 ~~~~~~vdgiii~~~~~~~~~~~~~~-~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~  135 (304)
T 3o1i_D           58 LCTQWGANAIILGTVDPHAYEHNLKS-WV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSG  135 (304)
T ss_dssp             HHHHHTCSEEEECCSSTTSSTTTHHH-HT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTC
T ss_pred             HHHHcCCCEEEEeCCChhHHHHHHHH-Hc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCC
Confidence            34455676666 4444331 233444 44 8999999753221   11223456777887778888888887777     


Q ss_pred             CcEEEEEeec-C--cchhhHHHHHhCCCCCCceEEEEecCC---CchHHHHHHH-HhCCCceEEEecCchhHHHHH
Q psy18065         78 WTKVAIVYEE-D--NGLFKLQELVKTPPTLKTEMYIRHANP---STYRNVLREI-RQKEIFNLIIDTSTTHISQFF  146 (149)
Q Consensus        78 W~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~v~~~~~~~---~d~~~~l~~i-~~~~~~~iil~~~~~~~~~il  146 (149)
                      -++++++... +  ....+.+.+.+.+++.|+.+.......   ++..+.+.++ +....+. + .++...+..++
T Consensus       136 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~  209 (304)
T 3o1i_D          136 KTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSFWADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAI  209 (304)
T ss_dssp             CEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECCCCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHH
T ss_pred             CCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEeecCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHH
Confidence            8899999754 2  345778889988888887654322222   1223333333 3344556 3 34544444443

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=93.85  E-value=0.64  Score=32.47  Aligned_cols=95  Identities=6%  Similarity=-0.031  Sum_probs=59.7

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.+||-........ ....+...++|+|..+.......   ...+.......+...++.+...|-++++++....
T Consensus        60 l~~~~vdgiIi~~~~~~~~-~~~~~~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~  135 (291)
T 3egc_A           60 FFERRVDGLILAPSEGEHD-YLRTELPKTFPIVAVNRELRIPG---CGAVLSENVRGARTAVEYLIARGHTRIGAIVGSA  135 (291)
T ss_dssp             HHHTTCSEEEECCCSSCCH-HHHHSSCTTSCEEEESSCCCCTT---CEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred             HHHCCCCEEEEeCCCCChH-HHHHhhccCCCEEEEecccCCCC---CCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3456777777544433333 33446677999999775432222   2456667777788888888778999999997653


Q ss_pred             ---cchhhHHHHHhCCCCCCce
Q psy18065         89 ---NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 ---~~~~~l~~l~~~~~~~~~~  107 (149)
                         ....+.+.+.+.+++.|+.
T Consensus       136 ~~~~~~~R~~gf~~~l~~~g~~  157 (291)
T 3egc_A          136 GLMTSRERLKGFRAAMSAAGLP  157 (291)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcCHHHHHHHHHHHHHHcCCC
Confidence               2345566666655544543

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=93.80  E-value=0.77  Score=31.66  Aligned_cols=95  Identities=11%  Similarity=-0.068  Sum_probs=57.3

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.++|-.........+.. +...++|++..+......  . ...+...+...+...++.+...|.++++++... 
T Consensus        55 l~~~~vdgii~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~  130 (275)
T 3d8u_A           55 FLESRPAGVVLFGSEHSQRTHQL-LEASNTPVLEIAELSSKA--S-YLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARG  130 (275)
T ss_dssp             HHTSCCCCEEEESSCCCHHHHHH-HHHHTCCEEEESSSCSSS--S-SEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSC
T ss_pred             HHhcCCCEEEEeCCCCCHHHHHH-HHhCCCCEEEEeeccCCC--C-CCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            44566766554222222333433 455799999876432211  2 245677777777888887776799999999865 


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      +  ....+.+.+.+.+++.|+.
T Consensus       131 ~~~~~~~R~~gf~~~l~~~g~~  152 (275)
T 3d8u_A          131 NHSTLQRQLHGWQSAMIENYLT  152 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCchHHHHHHHHHHHHHHcCCC
Confidence            2  2345666666655555543

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=93.77  E-value=1.2  Score=31.14  Aligned_cols=96  Identities=14%  Similarity=-0.051  Sum_probs=57.5

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+.++.++|..........+.. +...++|+|..+.......   ...+.+.+...+...++.+...|-++++++...
T Consensus        59 ~l~~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~  134 (287)
T 3bbl_A           59 LIRSGNVDGFVLSSINYNDPRVQF-LLKQKFPFVAFGRSNPDWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP  134 (287)
T ss_dssp             HHHTTCCSEEEECSCCTTCHHHHH-HHHTTCCEEEESCCSTTCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             HHHcCCCCEEEEeecCCCcHHHHH-HHhcCCCEEEECCcCCCCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            344567887775433222233443 4457999999765332112   224556666677777787766799999999865


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.+++.|+.
T Consensus       135 ~~~~~~~~R~~Gf~~~l~~~g~~  157 (287)
T 3bbl_A          135 EDSRVGNDRLQGYLEAMQTAQLP  157 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccHHHHHHHHHHHHHHcCCC
Confidence             2  2345666666655555543

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=93.65  E-value=0.83  Score=32.21  Aligned_cols=93  Identities=8%  Similarity=0.030  Sum_probs=58.6

Q ss_pred             HhhCCcEEEEcCCCCCcHH-HHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGP-HVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~-~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|-........ .+..+..  ++|+|..+..... ..   -.+......-+...++.+...|-++++++...
T Consensus        67 l~~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~-~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~  140 (303)
T 3kke_A           67 VSEGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPG-RV---GSVILDDQKGGGIATEHLITLGHSRIAFISGT  140 (303)
T ss_dssp             HHSCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTT-CC---CEEEECHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             HHhCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCC-CC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            3356777776544333333 5555555  9999998754322 22   24556666677777887777899999999764


Q ss_pred             -C--cchhhHHHHHhCCCCCCce
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~  107 (149)
                       +  ....+.+.+.+.+++.|+.
T Consensus       141 ~~~~~~~~R~~Gf~~al~~~g~~  163 (303)
T 3kke_A          141 AIHDTAQRRKEGYLETLASAGLR  163 (303)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcCccHHHHHHHHHHHHHHcCCC
Confidence             2  2345666666665555544

>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...

Probab=93.60  E-value=0.88  Score=32.69  Aligned_cols=97  Identities=10%  Similarity=0.047  Sum_probs=57.2

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.++|-.........+..+....++|++..+......  ++...+...+..-+...++.+...|.++++++... 
T Consensus       110 l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~  187 (340)
T 1qpz_A          110 MAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPL  187 (340)
T ss_dssp             HHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCCC--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCT
T ss_pred             HHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCCC--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            445678887753332222223333333689999876432211  22235666766667777787766799999999764 


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      +  ....+.+.+.+.+++.|+.
T Consensus       188 ~~~~~~~R~~Gf~~al~~~g~~  209 (340)
T 1qpz_A          188 ERNTGAGRLAGFMKAMEEAMIK  209 (340)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccHHHHHHHHHHHHHHCCCC
Confidence            2  2345666666665555543

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=93.52  E-value=1.4  Score=31.51  Aligned_cols=95  Identities=12%  Similarity=-0.027  Sum_probs=57.8

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.++|..........+.. +...++|++..+.......   ...+...+...+...++.+...|.++++++....
T Consensus       112 l~~~~vdgiI~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~  187 (332)
T 2hsg_A          112 MLGKQVDGIIFMSGNVTEEHVEE-LKKSPVPVVLAASIESTNQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTL  187 (332)
T ss_dssp             TSCCSSCCEEECCSSCCHHHHHH-HTTSSSCEEEESCCCSCTT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCT
T ss_pred             HHhCCCcEEEEecCCCCHHHHHH-HHhCCCCEEEEccccCCCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            33467877775443333334443 4567899998764322112   2245566666677777877777999999997653


Q ss_pred             -c---chhhHHHHHhCCCCCCce
Q psy18065         89 -N---GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 -~---~~~~l~~l~~~~~~~~~~  107 (149)
                       .   ...+.+.+.+.+++.|+.
T Consensus       188 ~~~~~~~~R~~Gf~~al~~~g~~  210 (332)
T 2hsg_A          188 EEPINHAKKVKGYKRALTESGLP  210 (332)
T ss_dssp             TSHHHHTTHHHHHHHHHHTTTCC
T ss_pred             ccCccHHHHHHHHHHHHHHcCCC
Confidence             2   345666666665555653

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}

Probab=93.49  E-value=0.76  Score=32.36  Aligned_cols=123  Identities=10%  Similarity=0.109  Sum_probs=68.3

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeecc-CCCC-------C-CcccEEEecCChhHHHHHHHHHHHhc--
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRL-DLEL-------N-SKEFSVNLYPSQKLLNAAFKDVIRFL--   76 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~-~~~~-------~-~~~~~~~~~p~~~~~~~ai~~ll~~~--   76 (149)
                      .+.++++.+||...+. ....+..  ...++|+|..+. ++..       . .......+.-  ..-....++++...  
T Consensus        57 ~l~~~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~p  131 (295)
T 3lft_A           57 QLVANGNDLVVGIATP-AAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSD--HNPAQQQVELIKALTP  131 (295)
T ss_dssp             HHTTSSCSEEEEESHH-HHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEE--CCCHHHHHHHHHHHCT
T ss_pred             HHHhcCCCEEEECCcH-HHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEEC--CccHHHHHHHHHHhCC
Confidence            3445678888864321 1222222  246899988753 2210       0 0112222221  11234555666555  


Q ss_pred             CCcEEEEEeecCc--chhhHHHHHhCCCCCCceEEEEecC-CCchHHHHHHHHhCCCceEEEe
Q psy18065         77 NWTKVAIVYEEDN--GLFKLQELVKTPPTLKTEMYIRHAN-PSTYRNVLREIRQKEIFNLIID  136 (149)
Q Consensus        77 ~W~~v~vi~~~~~--~~~~l~~l~~~~~~~~~~v~~~~~~-~~d~~~~l~~i~~~~~~~iil~  136 (149)
                      |-+++++++....  +..+++.+.+.+++.|+.+...... .++..+.++++.. ..+.|++.
T Consensus       132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~-~~dai~~~  193 (295)
T 3lft_A          132 NVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTS-KVDAIWVP  193 (295)
T ss_dssp             TCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTT-TCSEEEEC
T ss_pred             CCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHHh-cCCEEEEC
Confidence            8999999998743  4556777777766678776543332 3567777777764 45555553

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=93.38  E-value=0.59  Score=32.68  Aligned_cols=131  Identities=6%  Similarity=-0.028  Sum_probs=72.9

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-Cc
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-DN   89 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~~   89 (149)
                      +.++.++|--........+ ..+...++|+|..+.......   .-.+.......+...++.+...|-++++++... +.
T Consensus        64 ~~~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~i~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~  139 (288)
T 3gv0_A           64 TGSADGVIISKIEPNDPRV-RFMTERNMPFVTHGRSDMGIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRF  139 (288)
T ss_dssp             HTCCSEEEEESCCTTCHHH-HHHHHTTCCEEEESCCCSSCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTS
T ss_pred             cCCccEEEEecCCCCcHHH-HHHhhCCCCEEEECCcCCCCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCccc
Confidence            4566665532222222333 345567999998775332222   234566776778888888877799999999765 32


Q ss_pred             --chhhHHHHHhCCCCCCceEEEEec-C-C---CchHHHHHHHHhCC--CceEEEecCchhHHHHH
Q psy18065         90 --GLFKLQELVKTPPTLKTEMYIRHA-N-P---STYRNVLREIRQKE--IFNLIIDTSTTHISQFF  146 (149)
Q Consensus        90 --~~~~l~~l~~~~~~~~~~v~~~~~-~-~---~d~~~~l~~i~~~~--~~~iil~~~~~~~~~il  146 (149)
                        ...+.+.+.+.+++.|+.+....+ . .   ++..+.+.++.+..  .+.|+ .++...+..++
T Consensus       140 ~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~  204 (288)
T 3gv0_A          140 SFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALV  204 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHH
Confidence              346677777766666665433211 1 1   22345566665543  33333 33444444333

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=93.16  E-value=0.27  Score=34.45  Aligned_cols=94  Identities=13%  Similarity=0.094  Sum_probs=54.7

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.++|..........+. .+...++|++..+......    ...+.+.+...+...++.+...|-++++++... 
T Consensus        61 l~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~  135 (290)
T 3clk_A           61 AIERPVMGILLLSIALTDDNLQ-LLQSSDVPYCFLSMGFDDD----RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQ  135 (290)
T ss_dssp             HHSSCCSEEEEESCC----CHH-HHHCC--CEEEESCC--CC----SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCC
T ss_pred             HHhcCCCEEEEecccCCHHHHH-HHHhCCCCEEEEcCCCCCC----CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            4456777776533322222333 3456799999876433211    235667777777888888777799999999864 


Q ss_pred             C--cchhhHHHHHhCCCCCCce
Q psy18065         88 D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~~  107 (149)
                      +  ....+.+.+.+.+++.|+.
T Consensus       136 ~~~~~~~R~~gf~~~l~~~g~~  157 (290)
T 3clk_A          136 YPYTGRKRLAGYKKALKEANIA  157 (290)
T ss_dssp             CTTTHHHHHHHHHHHHHHTTCC
T ss_pred             CCcchHHHHHHHHHHHHHcCCC
Confidence            2  2456666666665555543

>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A

Probab=93.15  E-value=1.9  Score=31.91  Aligned_cols=97  Identities=8%  Similarity=-0.107  Sum_probs=61.3

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      ...++.+||-..  . ...+...+...++|+|..+..... ...+..-.+...+..-+...++.+...|-++++++... 
T Consensus        73 ~~~~vDGiIi~~--~-~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~  149 (412)
T 4fe7_A           73 KDWLGDGVIADF--D-DKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPE  149 (412)
T ss_dssp             --CCCSEEEEET--T-CHHHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred             hcCCCCEEEEec--C-ChHHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccc
Confidence            345677777522  2 233444566789999998743221 11122345667777778888888877899999999765 


Q ss_pred             Cc----chhhHHHHHhCCCCCCceEE
Q psy18065         88 DN----GLFKLQELVKTPPTLKTEMY  109 (149)
Q Consensus        88 ~~----~~~~l~~l~~~~~~~~~~v~  109 (149)
                      +.    ...+.+.+.+.+.+.|+...
T Consensus       150 ~~~~~~~~~R~~Gf~~al~~~g~~~~  175 (412)
T 4fe7_A          150 SSGKRWATEREYAFRQLVAEEKYRGV  175 (412)
T ss_dssp             TSCCHHHHHHHHHHHHHHTTSSSCCE
T ss_pred             cccccHHHHHHHHHHHHHHHcCCCcc
Confidence            22    45677778877777776543

>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}

Probab=93.03  E-value=1  Score=31.54  Aligned_cols=93  Identities=13%  Similarity=-0.018  Sum_probs=54.8

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHh-cCCc-EEEEE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF-LNWT-KVAIV   84 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~-~~W~-~v~vi   84 (149)
                      .++..++.+|| .|..+.........+...++|++....... .. +....+.+.+...+...++.+.. .|-+ +++++
T Consensus        56 ~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~-~~-~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i  133 (303)
T 3d02_A           56 DLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQ-PS-ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIY  133 (303)
T ss_dssp             HHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTTC-TT-CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCC-CC-CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEE
Confidence            34567788866 444322222233445567999999765311 11 22345667777777778887755 8887 89988


Q ss_pred             eec-Cc--chhhHHHHHhCCC
Q psy18065         85 YEE-DN--GLFKLQELVKTPP  102 (149)
Q Consensus        85 ~~~-~~--~~~~l~~l~~~~~  102 (149)
                      ... +.  ...+.+.+.+.++
T Consensus       134 ~g~~~~~~~~~R~~gf~~~l~  154 (303)
T 3d02_A          134 VGSLTVPQHNLWADLLVKYQK  154 (303)
T ss_dssp             CSCSSCHHHHHHHHHHHHHHH
T ss_pred             ecCCCCccHHHHHHHHHHHHH
Confidence            754 22  3455565655544

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=92.89  E-value=1.7  Score=30.44  Aligned_cols=101  Identities=14%  Similarity=-0.002  Sum_probs=61.3

Q ss_pred             HHhhCCcEEEEcCCCCC-cHHHHHHhhcccCCCceeeccCCCCC---CcccEEEecCChhHHHHHHHHHHHh--------
Q psy18065          8 RQLQNGVQALFGPSDAL-LGPHVQSICEALDVPHMESRLDLELN---SKEFSVNLYPSQKLLNAAFKDVIRF--------   75 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~-~~~~v~~~~~~~~iP~is~~~~~~~~---~~~~~~~~~p~~~~~~~ai~~ll~~--------   75 (149)
                      .+...++.+||...... ........+...++|+|.........   .++....+...+...+...++.+..        
T Consensus        54 ~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~  133 (309)
T 2fvy_A           54 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW  133 (309)
T ss_dssp             HHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccc
Confidence            34456788777644332 22333344556899999976532211   1123456777777777777776654        


Q ss_pred             ----cCCcEEEEEeec-C--cchhhHHHHHhCCCCCCceE
Q psy18065         76 ----LNWTKVAIVYEE-D--NGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        76 ----~~W~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~~v  108 (149)
                          .|-++++++... +  ....+.+.+.+.+++.|..+
T Consensus       134 ~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~  173 (309)
T 2fvy_A          134 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT  173 (309)
T ss_dssp             CTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             cccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCce
Confidence                678899998764 2  23566666776665566544

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=92.54  E-value=1.7  Score=30.10  Aligned_cols=94  Identities=5%  Similarity=-0.048  Sum_probs=58.0

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-Cc
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-DN   89 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~~   89 (149)
                      ..++.+||-....... .....+...++|+|..+......  +....+.......+...++.+...|-++++++... +.
T Consensus        67 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~  143 (292)
T 3k4h_A           67 GRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKPYDRK--DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDL  143 (292)
T ss_dssp             TTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT--TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTB
T ss_pred             cCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC--CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccc
Confidence            4677776643332222 23344566799999987543211  11234667777778888888877899999999865 32


Q ss_pred             --chhhHHHHHhCCCCCCce
Q psy18065         90 --GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        90 --~~~~l~~l~~~~~~~~~~  107 (149)
                        ...+.+.+.+.+++.|..
T Consensus       144 ~~~~~R~~gf~~~l~~~g~~  163 (292)
T 3k4h_A          144 LVTRDRLAGMSDALKLADIV  163 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHHHHcCCC
Confidence              345666666655555543

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=92.53  E-value=1.8  Score=30.01  Aligned_cols=98  Identities=8%  Similarity=0.015  Sum_probs=57.7

Q ss_pred             HHhhCCcEEEEc-CCCCCcH-HHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhc-C-CcEEEE
Q psy18065          8 RQLQNGVQALFG-PSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL-N-WTKVAI   83 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~~-~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~-~-W~~v~v   83 (149)
                      .+++.++.+||- |...... ..+. .+...++|+|.........  +....+.+.+...+...++.+... | -+++++
T Consensus        52 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~  128 (283)
T 2ioy_A           52 DLIQQKVDVLLINPVDSDAVVTAIK-EANSKNIPVITIDRSANGG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVE  128 (283)
T ss_dssp             HHHHTTCSEEEECCSSTTTTHHHHH-HHHHTTCCEEEESSCCSSS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHcCCCEEEEeCCchhhhHHHHH-HHHHCCCeEEEecCCCCCc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence            344567877654 4433322 3333 3556799999876432211  112345566666677777766444 5 899999


Q ss_pred             Eeec-Cc--chhhHHHHHhCCCCC-CceE
Q psy18065         84 VYEE-DN--GLFKLQELVKTPPTL-KTEM  108 (149)
Q Consensus        84 i~~~-~~--~~~~l~~l~~~~~~~-~~~v  108 (149)
                      +... +.  ...+.+.+.+.+++. |+.+
T Consensus       129 i~g~~~~~~~~~R~~Gf~~al~~~~~~~~  157 (283)
T 2ioy_A          129 LEGIPGASAARDRGKGFDEAIAKYPDIKI  157 (283)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             EECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence            9864 22  346677777776666 7654

>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}

Probab=92.48  E-value=1.8  Score=29.87  Aligned_cols=112  Identities=6%  Similarity=-0.068  Sum_probs=63.4

Q ss_pred             CcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC---c
Q psy18065         13 GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED---N   89 (149)
Q Consensus        13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~---~   89 (149)
                      ++.++|-.........+.. +...++|+|..+......   ....+...+...+...++.+...|-++++++....   .
T Consensus        57 ~vdgiI~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~  132 (277)
T 3cs3_A           57 MVDGAIILDWTFPTKEIEK-FAERGHSIVVLDRTTEHR---NIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYD  132 (277)
T ss_dssp             TCSEEEEECTTSCHHHHHH-HHHTTCEEEESSSCCCST---TEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHH
T ss_pred             cccEEEEecCCCCHHHHHH-HHhcCCCEEEEecCCCCC---CCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCcc
Confidence            4555553222222334443 445789999876432211   23456677766777778877767999999998652   2


Q ss_pred             chhhHHHHHhCCCCCCceEEEEecC--CCchHHHHHHHHhC
Q psy18065         90 GLFKLQELVKTPPTLKTEMYIRHAN--PSTYRNVLREIRQK  128 (149)
Q Consensus        90 ~~~~l~~l~~~~~~~~~~v~~~~~~--~~d~~~~l~~i~~~  128 (149)
                      ...+.+.+.+.+++.|+.+.+...+  ..+-.+.+.++.+.
T Consensus       133 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  173 (277)
T 3cs3_A          133 SQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQ  173 (277)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhc
Confidence            3456666666655566654421111  12334555665554

>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}

Probab=92.11  E-value=1.6  Score=31.52  Aligned_cols=94  Identities=12%  Similarity=0.078  Sum_probs=53.4

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|-.........+. .+...++|++..+..... ...+   .+...+..-+...++.+...|.++++++...
T Consensus       118 l~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~i~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~  193 (348)
T 3bil_A          118 LTSHGVDGIICVPNEECANQLE-DLQKQGMPVVLVDRELPGDSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGP  193 (348)
T ss_dssp             HHHTTCSCEEECCCGGGHHHHH-HHHHC-CCEEEESSCCSCC-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             HHhCCCCEEEEeCCCCChHHHH-HHHhCCCCEEEEcccCCCCCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            3456777776543332233333 344578999987643221 1222   3444554556777777766799999999765


Q ss_pred             -C--cchhhHHHHHhCCCCCCc
Q psy18065         88 -D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~  106 (149)
                       +  ....+.+.+.+.+++.|+
T Consensus       194 ~~~~~~~~R~~Gf~~al~~~g~  215 (348)
T 3bil_A          194 MDTSTGRERLEDFKAACANSKI  215 (348)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCccHHHHHHHHHHHHHHcCc
Confidence             2  234566666665544454

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=92.06  E-value=2.2  Score=29.94  Aligned_cols=97  Identities=9%  Similarity=0.067  Sum_probs=59.4

Q ss_pred             HhhCCcEEEEcCCCC-Cc-HHHHHHhhcccCCCceeeccCCCC-CCcccEEEecCChhHHHHHHHHHHHhcC---CcEEE
Q psy18065          9 QLQNGVQALFGPSDA-LL-GPHVQSICEALDVPHMESRLDLEL-NSKEFSVNLYPSQKLLNAAFKDVIRFLN---WTKVA   82 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s-~~-~~~v~~~~~~~~iP~is~~~~~~~-~~~~~~~~~~p~~~~~~~ai~~ll~~~~---W~~v~   82 (149)
                      +...++.+||..... .. ...+ ..+...++|+|........ ....+...+...+...+...++.+...|   -++++
T Consensus        54 l~~~~vdgiIi~~~~~~~~~~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~  132 (306)
T 2vk2_A           54 FVAQGVDAIFIAPVVATGWEPVL-KEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVV  132 (306)
T ss_dssp             HHHHTCSEEEECCSSSSSCHHHH-HHHHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHcCCCEEEEeCCChhhHHHHH-HHHHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEE
Confidence            445678777754433 22 2333 3345678999987643221 1111234566777667777777665555   78999


Q ss_pred             EEeec-C--cchhhHHHHHhCCCCCCc
Q psy18065         83 IVYEE-D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        83 vi~~~-~--~~~~~l~~l~~~~~~~~~  106 (149)
                      ++... +  ....+.+.+.+.+++.|.
T Consensus       133 ~i~~~~~~~~~~~R~~Gf~~al~~~g~  159 (306)
T 2vk2_A          133 ELQGTVGASVAIDRKKGFAEAIKNAPN  159 (306)
T ss_dssp             EEECSTTCHHHHHHHHHHHHHTTTCTT
T ss_pred             EEEcCCCChhHHHHHHHHHHHHhhCCC
Confidence            99764 2  245677778887777774

>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}

Probab=91.60  E-value=1.5  Score=26.88  Aligned_cols=76  Identities=11%  Similarity=0.016  Sum_probs=49.7

Q ss_pred             HHHHHHHHhcCCcEEEE-EeecCcchhhHHHHHhCCCC-CCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhH
Q psy18065         67 AAFKDVIRFLNWTKVAI-VYEEDNGLFKLQELVKTPPT-LKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHI  142 (149)
Q Consensus        67 ~ai~~ll~~~~W~~v~v-i~~~~~~~~~l~~l~~~~~~-~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~  142 (149)
                      +.+..=.+.-|.+++.+ +.++-.....++...++.-. -.+-+.+.-..+++...+++++.+.+.+.++++|+.+.-
T Consensus        22 Rk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYCDdeNk   99 (126)
T 2rbg_A           22 RKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDENK   99 (126)
T ss_dssp             HHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEECGGGH
T ss_pred             HHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEeCCCch
Confidence            33333446679999988 55654445555554443211 122233334457899999999999999999999998743

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=91.08  E-value=2.9  Score=29.85  Aligned_cols=92  Identities=10%  Similarity=-0.085  Sum_probs=55.6

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|- |.....  .....+...++|++..+.....   +.. .+...+..-+...++.+...|-++++++...
T Consensus       114 l~~~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~  187 (339)
T 3h5o_A          114 YLQHRPDGVLITGLSHAE--PFERILSQHALPVVYMMDLADD---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQ  187 (339)
T ss_dssp             HHTTCCSEEEEECSCCCT--THHHHHHHTTCCEEEEESCCSS---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             HHcCCCCEEEEeCCCCCH--HHHHHHhcCCCCEEEEeecCCC---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            34556666543 322222  2333456679999987532211   112 5667777777888888877799999999865


Q ss_pred             C--cchhhHHHHHhCCCCCCc
Q psy18065         88 D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        88 ~--~~~~~l~~l~~~~~~~~~  106 (149)
                      .  ....+.+.+.+.+++.|+
T Consensus       188 ~~~~~~~R~~Gf~~al~~~g~  208 (339)
T 3h5o_A          188 LDERVMKRLDGYRAALDAADC  208 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHHHHHHHHCCC
Confidence            3  234556666665554554

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=90.90  E-value=3.1  Score=29.28  Aligned_cols=94  Identities=6%  Similarity=-0.011  Sum_probs=56.3

Q ss_pred             HHhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHH-hcCCcEEEEEe
Q psy18065          8 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR-FLNWTKVAIVY   85 (149)
Q Consensus         8 ~~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~-~~~W~~v~vi~   85 (149)
                      .++..++.+||- |............+...++|+|..+........  ...+...+...+...++.+. ..|-++++++.
T Consensus        53 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~  130 (313)
T 3m9w_A           53 NMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMG  130 (313)
T ss_dssp             HHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTTSCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             HHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCCCCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            344566766664 333333233344466779999998754322221  13455666667778888776 88999999997


Q ss_pred             ec-Cc--chhhHHHHHhCCCC
Q psy18065         86 EE-DN--GLFKLQELVKTPPT  103 (149)
Q Consensus        86 ~~-~~--~~~~l~~l~~~~~~  103 (149)
                      .. +.  ...+.+.+.+.+++
T Consensus       131 g~~~~~~~~~R~~Gf~~~l~~  151 (313)
T 3m9w_A          131 GSPVDNNAKLFRAGQMKVLKP  151 (313)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHh
Confidence            54 22  34556666655444

>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}

Probab=90.58  E-value=1.5  Score=30.45  Aligned_cols=91  Identities=8%  Similarity=-0.045  Sum_probs=57.2

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC--
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED--   88 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~--   88 (149)
                      ..++.++|-.........+.. ....++|+|..+....  .   .-.+...+..-+...++.+...|-++++++....  
T Consensus        66 ~~~vdgiIi~~~~~~~~~~~~-~~~~~iPvV~~~~~~~--~---~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~  139 (289)
T 3g85_A           66 ENSFDAAIIANISNYDLEYLN-KASLTLPIILFNRLSN--K---YSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLN  139 (289)
T ss_dssp             TTCCSEEEESSCCHHHHHHHH-HCCCSSCEEEESCCCS--S---SEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSS
T ss_pred             ccCCCEEEEecCCcccHHHHH-hccCCCCEEEECCCCC--C---CCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            456777765444333333333 2357899999775321  1   2356667777788888888778999999998653  


Q ss_pred             -cchhhHHHHHhCCCCCCce
Q psy18065         89 -NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 -~~~~~l~~l~~~~~~~~~~  107 (149)
                       ....+.+.+.+.+++.|+.
T Consensus       140 ~~~~~R~~gf~~~l~~~~~~  159 (289)
T 3g85_A          140 DAMDNRNKGFIETCHKNGIK  159 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTTCB
T ss_pred             ccHHHHHHHHHHHHHHcCCC
Confidence             2345666666665555544

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=90.03  E-value=4  Score=29.25  Aligned_cols=99  Identities=5%  Similarity=0.002  Sum_probs=61.1

Q ss_pred             HHhh--CCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCC-CC----------CcccEEEecCChhHHHHHHHHHHH
Q psy18065          8 RQLQ--NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-LN----------SKEFSVNLYPSQKLLNAAFKDVIR   74 (149)
Q Consensus         8 ~~~~--~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~----------~~~~~~~~~p~~~~~~~ai~~ll~   74 (149)
                      +++.  +++.+||-.........+...+...+||+|....... ..          ...+...+.+.....+...++.+.
T Consensus        55 ~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~  134 (350)
T 3h75_A           55 ELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELL  134 (350)
T ss_dssp             HHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHH
Confidence            4455  4777766543444445555567788999999874322 11          111256677887778888888775


Q ss_pred             hcC------C-cEEEEEeec-C--cchhhHHHHHhCCCCCCc
Q psy18065         75 FLN------W-TKVAIVYEE-D--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        75 ~~~------W-~~v~vi~~~-~--~~~~~l~~l~~~~~~~~~  106 (149)
                      ..+      - ++++++... +  ....+.+.+.+.+++.+.
T Consensus       135 ~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~  176 (350)
T 3h75_A          135 HKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ  176 (350)
T ss_dssp             HHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC
Confidence            555      3 789988754 2  234566667666655554

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=89.36  E-value=1.3  Score=30.81  Aligned_cols=108  Identities=10%  Similarity=0.051  Sum_probs=64.6

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|-.. ..    + ..+...++|++..+.. ....  . . .+.+.+..-+...++.+. .|-++++++...
T Consensus        63 l~~~~vdgiIi~~-~~----~-~~~~~~~iPvV~~~~~~~~~~--~-~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~  131 (277)
T 3hs3_A           63 FENNNVDGIITSA-FT----I-PPNFHLNTPLVMYDSANINDD--I-V-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWP  131 (277)
T ss_dssp             HHHTTCSEEEEEC-CC----C-CTTCCCSSCEEEESCCCCCSS--S-E-EEEECHHHHHHHHHHTSC-TTCCEEEEEESC
T ss_pred             HHhCCCCEEEEcc-hH----H-HHHHhCCCCEEEEcccccCCC--C-E-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence            3345666655432 11    1 1245668999987754 3221  2 3 677777777777888777 899999999765


Q ss_pred             -C--cchhhHHHHHhCCCCCCceEEEEecCCCch-HHHHHHHHhC
Q psy18065         88 -D--NGLFKLQELVKTPPTLKTEMYIRHANPSTY-RNVLREIRQK  128 (149)
Q Consensus        88 -~--~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~-~~~l~~i~~~  128 (149)
                       +  ....+.+.+.+.+++.|+.+... +...++ .+.+.++.++
T Consensus       132 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~~~~~~~~l~~  175 (277)
T 3hs3_A          132 LSLPTIRERIEAMTAEASKLKIDYLLE-ETPENNPYISAQSALNK  175 (277)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSCHHHHHHHHHHT
T ss_pred             CcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCchHHHHHHHHcC
Confidence             2  23466777777766677766543 322221 4555555443

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=88.52  E-value=0.25  Score=33.58  Aligned_cols=66  Identities=11%  Similarity=0.184  Sum_probs=47.0

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-------------------------CC-----------CCCcccEEE
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESRLD-------------------------LE-----------LNSKEFSVN   57 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-------------------------~~-----------~~~~~~~~~   57 (149)
                      +..++||+++.=......++..+++|+|+.+--                         |.           .....|++-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilD   81 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFD   81 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEec
Confidence            567899999888888899999999999997520                         00           011235666


Q ss_pred             ecCChhHHHHHHHHHHHhcCCc
Q psy18065         58 LYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus        58 ~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      =.|....|+.++-.++...+..
T Consensus        82 GfPRt~~Qa~~l~~~l~~~~~~  103 (206)
T 3sr0_A           82 GFPRTVKQAEALDEMLEKKGLK  103 (206)
T ss_dssp             SCCCSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhHHHHHHHHhhHHHhccc
Confidence            6788777888877777665543

>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}

Probab=88.36  E-value=5.4  Score=28.49  Aligned_cols=124  Identities=6%  Similarity=-0.052  Sum_probs=68.5

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC-
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED-   88 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~-   88 (149)
                      ...++.++|-...       ...+...++|+|..+........+   .+...+..-+...++.+...|-++++++.... 
T Consensus       116 ~~~~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~  185 (333)
T 3jvd_A          116 ISIQAAGIIHVPV-------VGSIAPEGIPMVQLTRGELGPGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEES  185 (333)
T ss_dssp             HHHTCSEEEECCC-------TTCCC-CCSCEEEECC----CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTT
T ss_pred             HhCCCCEEEEcch-------HHHHhhCCCCEEEECccCCCCCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCC
Confidence            3456766665433       223456789999876533222222   35566666777778888777999999998652 


Q ss_pred             c--chhhHHHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCC-CceEEEecCchhHHHH
Q psy18065         89 N--GLFKLQELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKE-IFNLIIDTSTTHISQF  145 (149)
Q Consensus        89 ~--~~~~l~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~-~~~iil~~~~~~~~~i  145 (149)
                      .  ...+.+.+.+.+++.|+. .+....   .++-.+.+.++.+.. .+.|+ .++...+..+
T Consensus       186 ~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~  246 (333)
T 3jvd_A          186 LSTTQERMRGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGV  246 (333)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHH
Confidence            2  346677777766666765 222212   123345555554443 34443 3344444333

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=87.79  E-value=3.6  Score=29.44  Aligned_cols=95  Identities=7%  Similarity=-0.003  Sum_probs=57.1

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeecC
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEED   88 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~~   88 (149)
                      +...++.+||-....... .....+...++|++..+......   ....+...+..-+...++.+...|-++++++....
T Consensus       120 l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~  195 (344)
T 3kjx_A          120 MLSWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEIMDSDGKP---VDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKM  195 (344)
T ss_dssp             HHTTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEEEECSSCC---SSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESST
T ss_pred             HHhCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEEeCCCCCC---CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCc
Confidence            445567666543332232 33344567799999875222111   12345667766777888877777999999997652


Q ss_pred             --c--chhhHHHHHhCCCCCCce
Q psy18065         89 --N--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 --~--~~~~l~~l~~~~~~~~~~  107 (149)
                        .  ...+.+.+.+.+++.|+.
T Consensus       196 ~~~~~~~~R~~Gf~~al~~~g~~  218 (344)
T 3kjx_A          196 PLDYRARKRFEGFTEVLGKNGVE  218 (344)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCccHHHHHHHHHHHHHHcCCC
Confidence              1  345666666666555554

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=87.66  E-value=3.3  Score=28.99  Aligned_cols=94  Identities=9%  Similarity=0.045  Sum_probs=57.6

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-C
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-D   88 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-~   88 (149)
                      ...++.+||--........ ...+...++|+|..+.......   .-.+......-+...++.+...|-++++++... +
T Consensus        80 ~~~~vdgiIi~~~~~~~~~-~~~l~~~~iPvV~i~~~~~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~  155 (305)
T 3huu_A           80 QSKSVDGFILLYSLKDDPI-EHLLNEFKVPYLIVGKSLNYEN---IIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGH  155 (305)
T ss_dssp             HTTCCSEEEESSCBTTCHH-HHHHHHTTCCEEEESCCCSSTT---CCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSC
T ss_pred             HhCCCCEEEEeCCcCCcHH-HHHHHHcCCCEEEECCCCcccC---CcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcc
Confidence            3466777664322222223 3345567999999875432112   234566776677788888877799999999865 3


Q ss_pred             c--chhhHHHHHhCCCCCCce
Q psy18065         89 N--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        89 ~--~~~~l~~l~~~~~~~~~~  107 (149)
                      .  ...+.+.+.+.+++.|+.
T Consensus       156 ~~~~~~R~~Gf~~~l~~~g~~  176 (305)
T 3huu_A          156 YAVTEDRSVGFKQYCDDVKIS  176 (305)
T ss_dssp             BHHHHHHHHHHHHHHHHTTCC
T ss_pred             cchhHHHHHHHHHHHHHcCCC
Confidence            2  345666666665555544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=87.52  E-value=0.24  Score=34.02  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         13 GVQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      ++..++||.++.=+.....++..+++|+|+.+
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG   61 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG   61 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence            47889999999888888999999999999986

>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1

Probab=86.90  E-value=4.3  Score=27.48  Aligned_cols=90  Identities=4%  Similarity=-0.067  Sum_probs=54.1

Q ss_pred             HhhCCcEEEEc-CCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiG-p~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.++|- |......    ......++|++..+...  .  . .-.+...+..-+...++.+...|.++++++...
T Consensus        54 l~~~~vdgiI~~~~~~~~~----~~l~~~~~pvV~~~~~~--~--~-~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~  124 (255)
T 1byk_A           54 LKRRNIDGVVLFGFTGITE----EMLAHWQSSLVLLARDA--K--G-FASVCYDDEGAIKILMQRLYDQGHRNISYLGVP  124 (255)
T ss_dssp             HHTTTCCEEEEECCTTCCT----TTSGGGSSSEEEESSCC--S--S-CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             HHhcCCCEEEEecCccccH----HHHHhcCCCEEEEcccc--C--C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence            33456776654 3222211    12345689998876422  1  1 235666766677778887777799999999853


Q ss_pred             --C--cchhhHHHHHhCCCCCCce
Q psy18065         88 --D--NGLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 --~--~~~~~l~~l~~~~~~~~~~  107 (149)
                        +  ....+.+.+.+.+++.|+.
T Consensus       125 ~~~~~~~~~R~~gf~~al~~~g~~  148 (255)
T 1byk_A          125 HSDVTTGKRRHEAYLAFCKAHKLH  148 (255)
T ss_dssp             TTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCC
Confidence              2  2456666666665555554

>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}

Probab=86.57  E-value=1.7  Score=30.96  Aligned_cols=92  Identities=8%  Similarity=0.027  Sum_probs=56.7

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+...++.+|| .......    ..+...++|++..+..... .   ...+.+.+...+...++.+...|-++++++...
T Consensus       111 ~l~~~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~-~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~  181 (330)
T 3ctp_A          111 VLQSHRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD-N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGP  181 (330)
T ss_dssp             HHHHTTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT-T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             HHHhCCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC-C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            34456788888 3322221    2245678999987643222 2   124556666667777887766799999999865


Q ss_pred             C---cchhhHHHHHhCCCCCCceE
Q psy18065         88 D---NGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        88 ~---~~~~~l~~l~~~~~~~~~~v  108 (149)
                      .   ....+.+.+.+.+++.|+.+
T Consensus       182 ~~~~~~~~R~~Gf~~al~~~g~~~  205 (330)
T 3ctp_A          182 EVFEATELRYKGFLDGARAKDLEI  205 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccCccHHHHHHHHHHHHHHcCCCc
Confidence            3   23456666666655556544

>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...

Probab=86.28  E-value=7.4  Score=27.90  Aligned_cols=93  Identities=13%  Similarity=0.085  Sum_probs=52.1

Q ss_pred             HhhCCcEEEE--cCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065          9 QLQNGVQALF--GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus         9 ~~~~~v~aii--Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      +...++.++|  +|...  ...+...+...++|++..+.... ...+   .+...+..-+...++.+...|.++++++..
T Consensus       114 l~~~~vdGiIi~~~~~~--~~~~~~~~~~~~iPvV~i~~~~~-~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g  187 (349)
T 1jye_A          114 LLAQRVSGLIINYPLDD--QDAIAVEAACTNVPALFLDVSDQ-TPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAG  187 (349)
T ss_dssp             HHTTTCSCEEEESCCCH--HHHHHHHHHTTTSCEEESSSCTT-SSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             HHHCCCCEEEEecCCCC--hhHHHHHHhhCCCCEEEEcccCC-CCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            3455666655  34322  12222334457899998753221 1122   344555556666677666679999999986


Q ss_pred             c-Cc--chhhHHHHHhCCCCCCce
Q psy18065         87 E-DN--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        87 ~-~~--~~~~l~~l~~~~~~~~~~  107 (149)
                      . +.  ...+.+.+.+.+++.|+.
T Consensus       188 ~~~~~~~~~R~~Gf~~al~~~gi~  211 (349)
T 1jye_A          188 PLSSVSARLRLAGWHKYLTRNQIQ  211 (349)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCC
Confidence            4 22  345666666655555553

>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}

Probab=85.53  E-value=8.3  Score=27.78  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=43.8

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEe
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVY   85 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~   85 (149)
                      ...++.+||--........+. .+...++|+|..+........+   .+...+..-+...++.|...|-++++++.
T Consensus       125 ~~~~vdGiIi~~~~~~~~~~~-~l~~~~iPvV~i~~~~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~  196 (366)
T 3h5t_A          125 NNAAVDGVVIYSVAKGDPHID-AIRARGLPAVIADQPAREEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILS  196 (366)
T ss_dssp             HTCCCSCEEEESCCTTCHHHH-HHHHHTCCEEEESSCCSCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEE
T ss_pred             HhCCCCEEEEecCCCChHHHH-HHHHCCCCEEEECCccCCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEe
Confidence            345565555322222222333 3456699999876533222222   35566666778888888778999999998

>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*

Probab=85.37  E-value=8  Score=27.45  Aligned_cols=98  Identities=6%  Similarity=-0.057  Sum_probs=57.5

Q ss_pred             HHhhCCcEEEEcCCCCCc-HHHHHHhhcccCCCceee-ccC-CCC--CCcccEEEecCChhHHHHHHHHHHHh-cC-CcE
Q psy18065          8 RQLQNGVQALFGPSDALL-GPHVQSICEALDVPHMES-RLD-LEL--NSKEFSVNLYPSQKLLNAAFKDVIRF-LN-WTK   80 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~-~~~v~~~~~~~~iP~is~-~~~-~~~--~~~~~~~~~~p~~~~~~~ai~~ll~~-~~-W~~   80 (149)
                      .+...++.+||-+..... ...+.. +...++|.+.. ... +..  +..+....+.+.+...+...++.+.. .| -++
T Consensus        99 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~  177 (342)
T 1jx6_A           99 EALKSKSDYLIFTLDTTRHRKFVEH-VLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTY  177 (342)
T ss_dssp             HHHHTTCSEEEECCSSSTTHHHHHH-HHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCE
T ss_pred             HHHhcCCCEEEEeCChHhHHHHHHH-HHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCce
Confidence            344567888887554432 334443 44568999876 432 210  11122345667777777778887755 57 999


Q ss_pred             EEEEeecC--cchhhHHHHHhCCCCCCc
Q psy18065         81 VAIVYEED--NGLFKLQELVKTPPTLKT  106 (149)
Q Consensus        81 v~vi~~~~--~~~~~l~~l~~~~~~~~~  106 (149)
                      ++++....  ....+.+.+.+.+++.|.
T Consensus       178 I~~i~~~~~~~~~~R~~Gf~~~l~~~~~  205 (342)
T 1jx6_A          178 YSVLYFSEGYISDVRGDTFIHQVNRDNN  205 (342)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEcCCcchhhHHHHHHHHHHHhCCC
Confidence            99997553  233555666665555454

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=85.22  E-value=8.5  Score=27.63  Aligned_cols=95  Identities=11%  Similarity=0.064  Sum_probs=58.4

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec-
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE-   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~-   87 (149)
                      +...++.++|-........ ....+...++|++..+..+...   ....+...+..-+...++.|...|-++++++... 
T Consensus       122 l~~~~vdGiI~~~~~~~~~-~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~  197 (355)
T 3e3m_A          122 MLRRRPEAMVLSYDGHTEQ-TIRLLQRASIPIVEIWEKPAHP---IGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKD  197 (355)
T ss_dssp             HHHTCCSEEEEECSCCCHH-HHHHHHHCCSCEEEESSCCSSC---SSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             HHhCCCCEEEEeCCCCCHH-HHHHHHhCCCCEEEECCccCCC---CCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCc
Confidence            3455666665433322333 3344567799999875322111   1235667776677778888877899999999864 


Q ss_pred             C--c-chhhHHHHHhCCCCCCce
Q psy18065         88 D--N-GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~--~-~~~~l~~l~~~~~~~~~~  107 (149)
                      +  . ...+.+.+.+.+++.|+.
T Consensus       198 ~~~~~~~~R~~Gf~~al~~~g~~  220 (355)
T 3e3m_A          198 DDWTRGAARRAGFKRAMREAGLN  220 (355)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTSC
T ss_pred             ccChhHHHHHHHHHHHHHHCCcC
Confidence            2  2 346677777766655654

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=84.08  E-value=2.4  Score=29.42  Aligned_cols=71  Identities=10%  Similarity=-0.039  Sum_probs=37.5

Q ss_pred             HHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEE-ec-----------CCCchHHHHHH-H-HhCCCce
Q psy18065         67 AAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIR-HA-----------NPSTYRNVLRE-I-RQKEIFN  132 (149)
Q Consensus        67 ~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~-~~-----------~~~d~~~~l~~-i-~~~~~~~  132 (149)
                      .++++.++..|-++|+++..  +....-+.+.+.+...|+.+... ..           ++..+.+.+++ + +..+++.
T Consensus       106 ~A~~~al~~~g~~rvglltp--y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ada  183 (240)
T 3ixl_A          106 TAVLNGLRALGVRRVALATA--YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDG  183 (240)
T ss_dssp             HHHHHHHHHTTCSEEEEEES--SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSE
T ss_pred             HHHHHHHHHhCCCEEEEEeC--ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCE
Confidence            35556666666677777754  22111111112222235544321 11           11346677777 7 7778999


Q ss_pred             EEEecCc
Q psy18065        133 LIIDTST  139 (149)
Q Consensus       133 iil~~~~  139 (149)
                      |++-|..
T Consensus       184 ivL~CT~  190 (240)
T 3ixl_A          184 ILLSSGG  190 (240)
T ss_dssp             EEEECTT
T ss_pred             EEEeCCC
Confidence            9998854

>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*

Probab=80.58  E-value=13  Score=26.41  Aligned_cols=125  Identities=6%  Similarity=-0.048  Sum_probs=62.5

Q ss_pred             HHHhhCCcEEEEcCCCCCcHHHHHHhhccc-CCCceeeccCCC-CCCcccEEEecCChhHHHHHH----HHHHHhcCC-c
Q psy18065          7 CRQLQNGVQALFGPSDALLGPHVQSICEAL-DVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAF----KDVIRFLNW-T   79 (149)
Q Consensus         7 c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~-~iP~is~~~~~~-~~~~~~~~~~~p~~~~~~~ai----~~ll~~~~W-~   79 (149)
                      -.+.++++.+||+..... ...+..++..+ ++|++....... ..+   ........ ..+..+    +..+..-|- +
T Consensus        56 ~~l~~~~~dgIi~~~~~~-~~~~~~~a~~~p~~p~v~id~~~~~~~~---~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r  130 (318)
T 2fqx_A           56 SAFADENMGLVVACGSFL-VEAVIETSARFPKQKFLVIDAVVQDRDN---VVSAVFGQ-NEGSFLVGVAAALKAKEAGKS  130 (318)
T ss_dssp             HHHHHTTCSEEEEESTTT-HHHHHHHHHHCTTSCEEEESSCCCSCTT---EEEEEECH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCCEEEECChhH-HHHHHHHHHHCCCCEEEEEcCccCCCCC---EEEEEech-HHHHHHHHHHHHHHhccCCCc
Confidence            345567788888744322 23355555544 799888653221 111   12222333 233233    455555576 8


Q ss_pred             EEEEEeecC--cchhhHHHHHhCCCCCCc--eEEEEecCC-C---chHHHHHHHHhCCCceEEEe
Q psy18065         80 KVAIVYEED--NGLFKLQELVKTPPTLKT--EMYIRHANP-S---TYRNVLREIRQKEIFNLIID  136 (149)
Q Consensus        80 ~v~vi~~~~--~~~~~l~~l~~~~~~~~~--~v~~~~~~~-~---d~~~~l~~i~~~~~~~iil~  136 (149)
                      +|++|...+  ....+...+.+.++..|.  .+....... .   .-.+..+.+.+.++++|+..
T Consensus       131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~  195 (318)
T 2fqx_A          131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV  195 (318)
T ss_dssp             EEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC
Confidence            999997532  234555555555444343  332221111 1   23455566666677655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	99.93
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	99.78
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	99.78
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	99.65
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	99.59
d3ckma1	317	YraM C-terminal domain {Haemophilus influenzae [Ta	99.38
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	96.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.98
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.35
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.23
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	89.43
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	89.24
d1jx6a_	338	Quorum-sensing signal (autoinducer-2) binding prot	88.86
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	88.23
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	86.86
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	86.3
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	86.06
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	85.42
d1nrza_	163	Sorbose permease subunit IIb , EIIb-sor {Klebsiell	84.45
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	83.55
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	82.5
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	82.15
d1blea_	161	Fructose permease, subunit IIb {Bacillus subtilis	81.95

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.3e-26  Score=173.13  Aligned_cols=139  Identities=16%  Similarity=0.311  Sum_probs=119.2

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEee
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYE   86 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~   86 (149)
                      .++|.|||||.+|..+.+++.+++.++||+|++++. +  + ...+|+++|+.|++..+++++++++++|||++|++||+
T Consensus       118 ~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~  197 (477)
T d1ewka_         118 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHT  197 (477)
T ss_dssp             -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEEe
Confidence            346999999999999999999999999999999863 2  2 35679999999999999999999999999999999998


Q ss_pred             c-CcchhhHHHHHhCCCCCCceEEEE-ecC--C--CchHHHHHHHHhC--CCceEEEecCchhHHHHHhhC
Q psy18065         87 E-DNGLFKLQELVKTPPTLKTEMYIR-HAN--P--STYRNVLREIRQK--EIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        87 ~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~--~--~d~~~~l~~i~~~--~~~~iil~~~~~~~~~il~qA  149 (149)
                      + ++|....+.+.+.+.+.|+|+... .++  .  .++..++++|+++  .+++||+++....+..++++|
T Consensus       198 ~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~~~rVIv~~~~~~~~~~ll~~a  268 (477)
T d1ewka_         198 EGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAM  268 (477)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTCCEEEEECCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHcCcEEEEEeeccCCCchhhHHHHHHHHhhhccCceEEEEecCHHHHHHHHHHH
Confidence            7 478888888888888889998653 343  2  4688999999876  678899999999999999875

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-19  Score=130.39  Aligned_cols=144  Identities=13%  Similarity=0.166  Sum_probs=105.8

Q ss_pred             HHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C--CCCcccEEEecCChhHHHHHHHHHHHhcCCc
Q psy18065          5 TMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E--LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT   79 (149)
Q Consensus         5 ~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~--~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~   79 (149)
                      ..|...+++|.+||||.+|..+.+++++++.+++|+|+++.. +  .  ...++++||+.|++..++.++++++++++|+
T Consensus        74 ~l~~~~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~  153 (401)
T d1jdpa_          74 RVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWS  153 (401)
T ss_dssp             HHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhccCCcEEEECCCCcchhHHHHHHHHhcCCceeeccccccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCc
Confidence            344444578999999999999999999999999999998753 2  1  2456889999999999999999999999999


Q ss_pred             EEEEEeec-CcchhhH---HHHHhCCCCCCceEEEEecC---CCchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         80 KVAIVYEE-DNGLFKL---QELVKTPPTLKTEMYIRHAN---PSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        80 ~v~vi~~~-~~~~~~l---~~l~~~~~~~~~~v~~~~~~---~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      +|++||++ ++|....   +.+.+.....+.........   ..++..+++.+ .+..+++++.+.......+++++
T Consensus       154 ~v~il~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~~~~~~~~~i~~~~  229 (401)
T d1jdpa_         154 RAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNI-QASERVVIMCASSDTIRSIMLVA  229 (401)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHH-HHHCSEEEEESCHHHHHHHHHHH
T ss_pred             EEEEEEecCcccchHHHHHHHHHHHhccceEEEEeeccccCchhHHHHHHHhh-ccCceeEEEEechHHHHHHHHHH
Confidence            99999997 4565433   33333333334333333322   23455555554 44567888888888888888763

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.4e-19  Score=131.99  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=109.3

Q ss_pred             HHHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-C--C-CCCcccEEEecCChhHHHHHHHHHHHhcC
Q psy18065          3 EATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-L--E-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN   77 (149)
Q Consensus         3 ~~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~--~-~~~~~~~~~~~p~~~~~~~ai~~ll~~~~   77 (149)
                      ...+++++ +++|.|||||.+|..+.++++++..++||+|++++. +  + ...++|++|+.|++..+..++++++++|+
T Consensus        66 ~~~a~~~~~~~~V~aiiG~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~  145 (425)
T d1dp4a_          66 PLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLG  145 (425)
T ss_dssp             HHHHHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCeEEECCCChHHhhhhhhhhHhhCCeEEeeecccccccccccCCccccccccchHHHHHHHHHHHhcc
Confidence            34455555 578999999999999999999999999999999753 2  2 35668899999999999999999999999


Q ss_pred             CcEEEEEeec-Ccchh-----hHHHHHhC-CCCCCceEEEEecCC---CchHHHHHHHHhCCCceEEEecCchhHHHHHh
Q psy18065         78 WTKVAIVYEE-DNGLF-----KLQELVKT-PPTLKTEMYIRHANP---STYRNVLREIRQKEIFNLIIDTSTTHISQFFR  147 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~-----~l~~l~~~-~~~~~~~v~~~~~~~---~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~  147 (149)
                      |++|+++|.+ ++|..     ..+..... ....++++.......   +++..+++.++. ..++|++.+..+.+..+++
T Consensus       146 ~~~vaii~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~  224 (425)
T d1dp4a_         146 WEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLML  224 (425)
T ss_dssp             CCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHH
T ss_pred             CceEEEEEeccccccchhhHHHHHHHHHHHHHhcceEEeeeeecCCchhHHHHHHHHhhh-cceeEEEecchhHHHHHHH
Confidence            9999999987 45542     22333222 223355555544332   456666666655 4578888888888888888


Q ss_pred             hC
Q psy18065        148 AV  149 (149)
Q Consensus       148 qA  149 (149)
                      ||
T Consensus       225 ~a  226 (425)
T d1dp4a_         225 LA  226 (425)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=4.7e-16  Score=112.42  Aligned_cols=148  Identities=9%  Similarity=0.087  Sum_probs=121.8

Q ss_pred             hHHHHHHHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccC-CC--CCCcccEEEecCChhHHHHHHHHH-HHhcC
Q psy18065          2 AEATMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LE--LNSKEFSVNLYPSQKLLNAAFKDV-IRFLN   77 (149)
Q Consensus         2 ~~~~~c~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~-~~--~~~~~~~~~~~p~~~~~~~ai~~l-l~~~~   77 (149)
                      +.+...+++++++++++||.++..+.+++.++..+++|+++++.. +.  ....+++|++.|++..+...++++ .++++
T Consensus        58 a~~~~~~li~~~~~~vig~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  137 (346)
T d1usga_          58 AVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK  137 (346)
T ss_dssp             HHHHHHHHHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCccccCCccCccchhhhhhhhhccccccccccCChhhhccCccccccccccchhHHHHHHhhhhhccc
Confidence            345677888888999999999999999999999999999998753 22  345678899999999999888886 57789


Q ss_pred             CcEEEEEeec-CcchhhHHHHHhCCCCCCceEEEE-ecCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhhC
Q psy18065         78 WTKVAIVYEE-DNGLFKLQELVKTPPTLKTEMYIR-HANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRAV  149 (149)
Q Consensus        78 W~~v~vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~-~~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~qA  149 (149)
                      |+++++++++ ++|....+.+.+.++..|.++... .+++  .|+.+.+.+|+++++++|++.+.......+++++
T Consensus       138 ~~~v~i~~~~~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~  213 (346)
T d1usga_         138 PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQA  213 (346)
T ss_dssp             CSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred             cceeEEecCchhhhHHHHHHHhhhhhcccceEEEEEecCccccchhhHHHHhhccCCCEEEEeccchhhhheeecc
Confidence            9999999997 467777777777776778777553 3443  6899999999999999999999988888887763

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.59  E-value=4e-15  Score=109.12  Aligned_cols=145  Identities=12%  Similarity=-0.015  Sum_probs=118.5

Q ss_pred             HHHHHHh-hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEE
Q psy18065          4 ATMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVA   82 (149)
Q Consensus         4 ~~~c~~~-~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~   82 (149)
                      +..-+++ +++|.+|+|+.+|..+.+++++++..++|+++.+........+++||+.|++..+...+++.+...+|++++
T Consensus        59 ~~a~~Li~~~~V~aiiG~~~S~~~~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~va  138 (373)
T d1qo0a_          59 LCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVV  138 (373)
T ss_dssp             HHHHHHHHHSCCCEEEECCSHHHHHHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEE
T ss_pred             HHHHHHHhhCCceEEEechhhhhhhhhHHHHHHhCCcEEecccccccccCCceeeeccChHHHHHHHHHHHHhccCceee
Confidence            3344665 478999999999999999999999999999987643333455788999999999999999999889999999


Q ss_pred             EEeec-CcchhhHHHHHhCCCCCCceEEEEe---cCC--CchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         83 IVYEE-DNGLFKLQELVKTPPTLKTEMYIRH---ANP--STYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        83 vi~~~-~~~~~~l~~l~~~~~~~~~~v~~~~---~~~--~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                      +++.| ++|....+.+.+.+++.|..+.-..   +++  .|+...+.++++.+++.|++.+.......+++|
T Consensus       139 ii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~  210 (373)
T d1qo0a_         139 FIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRA  210 (373)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHH
T ss_pred             eccCCccccHHHHhhhhhhhhcccCceeEEEEccCccccchhHHHHHHHHhhCCCceeeccccchHHHHHHH
Confidence            99988 4677777777777777887765432   232  589999999999999999998888777777765

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: YraM C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=6e-13  Score=94.56  Aligned_cols=140  Identities=9%  Similarity=-0.089  Sum_probs=106.4

Q ss_pred             HhhCCcEEEEcCCCCCcHHHHHH-hhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQALFGPSDALLGPHVQS-ICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~aiiGp~~s~~~~~v~~-~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +.+++|.+|+||.+|..+.++.. .+....+|+++.+........++.|++.|++..+...+++++...+|+++++++++
T Consensus        52 l~~~~v~~iiGp~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~  131 (317)
T d3ckma1          52 AKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQ  131 (317)
T ss_dssp             HHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEES
T ss_pred             HHHcCCeEEEEcccccchHHHHHHHHhccCceEEecccccccccccceEEeccCCHHHHHHHHhhhhhcccceeEEeccc
Confidence            34578999999999877666444 55566667666544332345577899999999999999999988899999999998


Q ss_pred             -CcchhhHHHHHhCCCCCCceEEEE-ecCCCchHHHHHHHHhCCCceEEEecCchhHHHHHhh
Q psy18065         88 -DNGLFKLQELVKTPPTLKTEMYIR-HANPSTYRNVLREIRQKEIFNLIIDTSTTHISQFFRA  148 (149)
Q Consensus        88 -~~~~~~l~~l~~~~~~~~~~v~~~-~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~il~q  148 (149)
                       ++|....+.+.+.+++.|.++... .++..+........+..+.+.+++......+..++++
T Consensus       132 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~  194 (317)
T d3ckma1         132 NDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPTELAEMKGY  194 (317)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHcCCEEEEEEeccccchhhhhhhhcccCcceEEEecChhHHHHHHHH
Confidence             578877777888777777766543 3455666666777788888999988887777777665

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.024  Score=38.10  Aligned_cols=97  Identities=10%  Similarity=-0.020  Sum_probs=59.5

Q ss_pred             HHhhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          8 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         8 ~~~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      .+.+++|.++|=.............+...++|.|..+.... ...+   ...+.....+...++.+...|-+++++|..+
T Consensus        52 ~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~~-~~~~---~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~  127 (271)
T d1jyea_          52 NLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQ-TPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGP  127 (271)
T ss_dssp             HHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCTT-SSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECC
T ss_pred             HHHhcCCCEEEeccccCchhHHHHHHHhcCCCeeeeecccc-ccCC---ccccchhhccccceeeeeccccccccccccc
Confidence            35567787766422222334455567789999998764321 2223   3456666677777887777799999999754


Q ss_pred             C---cchhhHHHHHhCCCCCCceE
Q psy18065         88 D---NGLFKLQELVKTPPTLKTEM  108 (149)
Q Consensus        88 ~---~~~~~l~~l~~~~~~~~~~v  108 (149)
                      .   ....+.+.+.+.+++.+...
T Consensus       128 ~~~~~~~~R~~g~~~~~~~~~~~~  151 (271)
T d1jyea_         128 LSSVSARLRLAGWHKYLTRNQIQP  151 (271)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cccchHHhhhHHHHHHhhhccccc
Confidence            2   23556666666555555443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.014  Score=37.82  Aligned_cols=32  Identities=31%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         13 GVQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      +|.+|.||.+|.=+.....+++.+++||||.|
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~iStG   35 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG   35 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEECHH
Confidence            58899999999999999999999999999976

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.35  E-value=0.052  Score=35.12  Aligned_cols=32  Identities=13%  Similarity=0.172  Sum_probs=28.6

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeecc
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESRL   45 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~   45 (149)
                      +.||-||.++.=+.....++..+++|||+.|.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            57888999999998999999999999999763

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.23  E-value=0.074  Score=33.81  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             hCCcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         11 QNGVQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        11 ~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      +.++..++||++|.=+.....++..+++|+|+.+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g   40 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG   40 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEecc
Confidence            3568999999999888889999999999999975

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=1.3  Score=28.84  Aligned_cols=90  Identities=4%  Similarity=-0.086  Sum_probs=55.9

Q ss_pred             hhCCcEEEEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec--
Q psy18065         10 LQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE--   87 (149)
Q Consensus        10 ~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~--   87 (149)
                      .+.++.++|=-......   ..+....++|++..+.+..  ..+   .+.+.....++.+++.+...|-++++++...  
T Consensus        55 ~~~~vdgiIi~~~~~~~---~~~~~~~~~p~v~i~~~~~--~~~---~v~~D~~~~g~~~~~~L~~~g~~~i~~i~~~~~  126 (255)
T d1byka_          55 KRRNIDGVVLFGFTGIT---EEMLAHWQSSLVLLARDAK--GFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHS  126 (255)
T ss_dssp             HTTTCCEEEEECCTTCC---TTTSGGGSSSEEEESSCCS--SCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTT
T ss_pred             HhccccceeeccccchH---HHHHHHcCCCEEEeccCCC--CCC---EEEeCcHHHHHHHHHHHHHhccccccccCCCcc
Confidence            34566665532222221   2467778889887664321  222   3566777788888888888899999999653  


Q ss_pred             Cc--chhhHHHHHhCCCCCCce
Q psy18065         88 DN--GLFKLQELVKTPPTLKTE  107 (149)
Q Consensus        88 ~~--~~~~l~~l~~~~~~~~~~  107 (149)
                      +.  +..+.+.+.+..+++|+.
T Consensus       127 ~~~~~~~r~~g~~~~~~~~~i~  148 (255)
T d1byka_         127 DVTTGKRRHEAYLAFCKAHKLH  148 (255)
T ss_dssp             STTTTHHHHHHHHHHHHHTTCC
T ss_pred             cccHHHHHhhHHHHHHHHcCCC
Confidence            22  345666666665556654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.24  E-value=0.11  Score=33.01  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             CcEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         13 GVQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        13 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      .+.+|+||.+|.=+.....++..+++++|+.+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~g   40 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEehh
Confidence            48999999999999999999999999999975

>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Quorum-sensing signal (autoinducer-2) binding protein LuxP
species: Vibrio harveyi [TaxId: 669]

Probab=88.86  E-value=2.3  Score=28.68  Aligned_cols=98  Identities=4%  Similarity=-0.026  Sum_probs=59.9

Q ss_pred             HHhhCCcEEEE-cCCCCCcHHHHHHhhcccCCCceeeccCCC---CCCcccEEEecCChhHHHHHHHHHHHhcCCc--EE
Q psy18065          8 RQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLE---LNSKEFSVNLYPSQKLLNAAFKDVIRFLNWT--KV   81 (149)
Q Consensus         8 ~~~~~~v~aii-Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~---~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~--~v   81 (149)
                      .++..++.+|| .|..+.....+..++...++|++.......   ....+....+.+.....+...++.+...+.+  ++
T Consensus        96 ~~i~~~vDgIIi~~~~~~~~~~i~~~~~~~~ipvv~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~i  175 (338)
T d1jx6a_          96 EALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYY  175 (338)
T ss_dssp             HHHHTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEE
T ss_pred             HHHhcCCCEEEEecCcccchHHHHHHHHhCCCeEEEEccCCcccccccCCCceEEecCHHHHHHHHHHHHHHhCCCCeEE
Confidence            45566776655 455667778888999999999998764321   1112222345667767788888888766654  56


Q ss_pred             EEEeecCc--chhhHHHHHhCCCCCC
Q psy18065         82 AIVYEEDN--GLFKLQELVKTPPTLK  105 (149)
Q Consensus        82 ~vi~~~~~--~~~~l~~l~~~~~~~~  105 (149)
                      +++.....  ...+...+.+.+.+.+
T Consensus       176 ~~i~~~~~~~~~~R~~gf~~~l~~~~  201 (338)
T d1jx6a_         176 SVLYFSEGYISDVRGDTFIHQVNRDN  201 (338)
T ss_dssp             EEECCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccccHHHHHHHHHHHHhhc
Confidence            66654421  2345555665544433

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.23  E-value=0.11  Score=32.78  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      +++|+||.+|.=+.....++..+++++|+.+
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g   38 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDFGWVHLSAG   38 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchh
Confidence            7899999999999899999999999999975

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.86  E-value=0.17  Score=31.81  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      +++|+||.+|.=+.....++..+++++|+.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~~i~~g   33 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYTHLSAG   33 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEcHH
Confidence            6899999999998888999999999999875

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.30  E-value=2.9  Score=27.01  Aligned_cols=76  Identities=11%  Similarity=0.006  Sum_probs=48.8

Q ss_pred             HhhCCcEE-EEcCCCCCcHHHHHHhhcccCCCceeeccCCCCCCcccEEEecCChhHHHHHHHHHHHhcCCcEEEEEeec
Q psy18065          9 QLQNGVQA-LFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKVAIVYEE   87 (149)
Q Consensus         9 ~~~~~v~a-iiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~p~~~~~~~ai~~ll~~~~W~~v~vi~~~   87 (149)
                      +...++.+ |+.+.... ...........++|++..+......  .+..-..+.....+..+...+...|-++++++...
T Consensus        52 l~~~~vdgiIi~~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~  128 (282)
T d1dbqa_          52 MAQKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP  128 (282)
T ss_dssp             HHHTTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECSSCCS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             HHhcCCCEEeeeccccc-chhhhhHHhhcCCCceEEEeccccc--ccceEEEecccchhhhhhhhhccccccccccccCC
Confidence            44567777 45444443 3334445556789999987543222  22233566666677778888888999999999765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=86.06  E-value=0.24  Score=30.84  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             EEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         15 QALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      ..|+||.+|.=+.....++..+++|+++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~is~g   32 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPHISTG   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceeeHH
Confidence            578999999888888999999999999975

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=85.42  E-value=0.26  Score=31.14  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=27.8

Q ss_pred             cEEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         14 VQALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        14 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      -.+++||.+|.=+.....++..+++++|+.+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g~~~is~g   38 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFELKHLSSG   38 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBCCEEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence            4678999999998888999999999999975

>d1nrza_ c.38.1.1 (A:) Sorbose permease subunit IIb , EIIb-sor {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: PTS IIb component
superfamily: PTS IIb component
family: PTS IIb component
domain: Sorbose permease subunit IIb , EIIb-sor
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.45  E-value=1.4  Score=27.29  Aligned_cols=82  Identities=7%  Similarity=0.000  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHH
Q psy18065         65 LNAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQ  144 (149)
Q Consensus        65 ~~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~  144 (149)
                      .+..+....++++-+++.++-+.-..-...+.+++.+.-.|+.+.+..+  ++..+.+++-+..+.+++|+..++..+..
T Consensus        14 HGQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~mA~P~gvk~~i~sv--e~a~~~l~~~~~~~~~v~il~~~~~d~~~   91 (163)
T d1nrza_          14 HGQVTTVWSKVANAQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSL--EKAVAVYHNPQYQDETVFYLFTNPHDVLT   91 (163)
T ss_dssp             CHHHHHHHHHHHTCSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECH--HHHHHHHTCGGGTTCEEEEEESSHHHHHH
T ss_pred             hhhhhhhhhcccCCCEEEEEcchhhCCHHHHHHHHhhCCCCCEEEEEeH--HHHHHHHhcCcccCceEEEEECCHHHHHH
Confidence            3556677889999999988866433445567777777667877766432  34455555544556778888889999988


Q ss_pred             HHhh
Q psy18065        145 FFRA  148 (149)
Q Consensus       145 il~q  148 (149)
                      ++++
T Consensus        92 l~~~   95 (163)
T d1nrza_          92 MVRQ   95 (163)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            8764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.55  E-value=0.37  Score=29.71  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=26.7

Q ss_pred             EEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         15 QALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      ..|+||++|.=+.....++..+++++|+.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~~   32 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTG   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceechh
Confidence            568999999888888999999999999975

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=82.50  E-value=2  Score=25.59  Aligned_cols=12  Identities=33%  Similarity=0.390  Sum_probs=6.4

Q ss_pred             cEEEEEeecCcc
Q psy18065         79 TKVAIVYEEDNG   90 (149)
Q Consensus        79 ~~v~vi~~~~~~   90 (149)
                      +++.|+|...+|
T Consensus         3 ~Ki~IiY~S~tG   14 (152)
T d1e5da1           3 NKVVIFYDSMWH   14 (152)
T ss_dssp             SEEEEEECCSSS
T ss_pred             CeEEEEEECCCc
Confidence            356666655443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=82.15  E-value=0.38  Score=30.06  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             EEEEcCCCCCcHHHHHHhhcccCCCceeec
Q psy18065         15 QALFGPSDALLGPHVQSICEALDVPHMESR   44 (149)
Q Consensus        15 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~   44 (149)
                      .+++||.+|.=+.....++..+++++|+.+
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g~~~i~~g   35 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFCVCHLATG   35 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence            457899999988888999999999999975

>d1blea_ c.38.1.1 (A:) Fructose permease, subunit IIb {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: PTS IIb component
superfamily: PTS IIb component
family: PTS IIb component
domain: Fructose permease, subunit IIb
species: Bacillus subtilis [TaxId: 1423]

Probab=81.95  E-value=1.6  Score=26.90  Aligned_cols=81  Identities=9%  Similarity=0.089  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEeecCcchhhHHHHHhCCCCCCceEEEEecCCCchHHHHHHHHhCCCceEEEecCchhHHHH
Q psy18065         66 NAAFKDVIRFLNWTKVAIVYEEDNGLFKLQELVKTPPTLKTEMYIRHANPSTYRNVLREIRQKEIFNLIIDTSTTHISQF  145 (149)
Q Consensus        66 ~~ai~~ll~~~~W~~v~vi~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~~iil~~~~~~~~~i  145 (149)
                      +..+....++++-+.+.++-+.--.-...+.++..+.-.|+.+.+..+  ++..+.+++-+..+.+++|+.-+++.+..+
T Consensus        15 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sv--e~a~~~l~~~~~~~~~v~vl~~~~~da~~l   92 (161)
T d1blea_          15 GQILTRWIKVHAADRIIVVSDDIAQDEMRKTLILSVAPSNVKASAVSV--SKMAKAFHSPRYEGVTAMLLFENPSDIVSL   92 (161)
T ss_dssp             TTHHHHHHHHHTCSEEEEECHHHHHCHHHHHHHHTSSCTTSEEEEECH--HHHHHHHHCSTTTTCEEEEEESSSHHHHHH
T ss_pred             hhhhhhhhcccCCCEEEEEcchhhCCHHHHHHHHhhCCCCCeEEEEEH--HHHHHHHhCccccCceEEEEeCCHHHHHHH
Confidence            445667788889999888755433334556677777667877765433  345555555555566788888899999888


Q ss_pred             Hhh
Q psy18065        146 FRA  148 (149)
Q Consensus       146 l~q  148 (149)
                      +++
T Consensus        93 ~~~   95 (161)
T d1blea_          93 IEA   95 (161)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            754