Psyllid ID: psy18092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MLYREVSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFSI
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHcccEEEcccccccccHHHHHHHHccccccccccccccccccccEEEEcEEccccccccccccEEEEccccccccHHHHHHHHHcccccEEEEccccccccccEEEEEEcccHHHHccccccEEEEcccccHHHHHHHHcccEEEEEcccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccHHHHHHHHHHccccEEccccccccccccccHHHHHHHHHccccccccccccccccHHHHHEcccccccccccccccEEEEccccEEEEEEEEccccEEEEEEccccccccEEEEEEEEccccHHHHcccccEEEEEccccHHHHHHHHHcccEEEEEccccccccHHHHHcc
Coil and Loop (DISEMBL)
mlyrevstigspAFIRVCLlstrprvcfppgtdnvrsrngwlspilssfslrfrddktardTVSRVVTRLFAmekipgsnptinkkkldsyfdgkhfgVSIHTvantsthvlikdsdldeIMINSIAVCagsggellrgkkadlyitgemshhdvldathRGTTVLLLEhsdserpflqffsi
Flexible Loop (DISEMBL)
mlyrevstigspaFIRVCLLstrprvcfppgtdnvrsrngwlSPILSsfslrfrddktardTVSRVVTrlfamekipgsnptinkKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAvcagsggellRGKKADLYITGEMSHHDVLDATHRGTTVLLLehsdserpflqffsi
Low Complexity Region (SEG)
MLYREVSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFSI
Disordered region (IsUnstruct)
*****VSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLE**************
Disordered Region (DISOPRED)
MLYREVSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFSI
Disordered Region (DISEMBL)
MLYREVSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFSI
Disordered Region (DISPRO)
MLYREVSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFSI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLYREVSTIGSPAFIRVCLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9NK57	292	NIF3-like protein 1 OS=Dr	yes	N/A	0.404	0.253	0.554	2e-16
Q9EQ80	376	NIF3-like protein 1 OS=Mu	yes	N/A	0.322	0.156	0.610	2e-15
Q4V7D6	376	NIF3-like protein 1 OS=Ra	yes	N/A	0.306	0.148	0.625	3e-15
Q05B89	377	NIF3-like protein 1 OS=Bo	yes	N/A	0.306	0.148	0.607	2e-14
Q9GZT8	377	NIF3-like protein 1 OS=Ho	yes	N/A	0.322	0.156	0.576	3e-14
Q55E83	354	Protein NIF3 homolog OS=D	yes	N/A	0.306	0.158	0.517	3e-12
P53081	288	NGG1-interacting factor 3	yes	N/A	0.371	0.236	0.471	9e-11
O94404	278	Protein NIF3 homolog OS=S	yes	N/A	0.311	0.205	0.491	1e-10
Q9PPK2	241	UPF0135 protein Cj0705 OS	yes	N/A	0.371	0.282	0.352	7e-06

>sp|Q9NK57|NIF3L_DROME NIF3-like protein 1 OS=Drosophila melanogaster GN=anon-35F/36A PE=2 SV=3

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%)

Query: 108 STHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLL 167
           S HV +      + +I S+ +CAGSG  LL+G +ADL ITGEMSHH+VL+ TH  TTVLL
Sbjct: 172 SVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFTHNNTTVLL 231

Query: 168 LEHSDSERPFLQFF 181
             HS+SER FL  F
Sbjct: 232 CNHSNSERGFLHEF 245

Drosophila melanogaster (taxid: 7227)

>sp|Q9EQ80|NIF3L_MOUSE NIF3-like protein 1 OS=Mus musculus GN=Nif3l1 PE=1 SV=4

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
           E  +  +A+CAGSGG +L+G +ADLY+TGEMSHHDVLDA  +G  V+L EHS++ER FL
Sbjct: 288 ESQVKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFL 346

Mus musculus (taxid: 10090)

>sp|Q4V7D6|NIF3L_RAT NIF3-like protein 1 OS=Rattus norvegicus GN=Nif3l1 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
           +  +A+CAGSGG +L+G +ADLY+TGEMSHHDVLDA  +G  V+L EHS++ER FL
Sbjct: 291 VKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFL 346

Rattus norvegicus (taxid: 10116)

>sp|Q05B89|NIF3L_BOVIN NIF3-like protein 1 OS=Bos taurus GN=NIF3L1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
           +  +A+CAGSG  +L+G  ADLY+TGEMSHHDVLDA  +G +V+L EHS++ER FL
Sbjct: 292 VKVVALCAGSGSSVLQGTDADLYLTGEMSHHDVLDAASQGISVILCEHSNTERGFL 347

Bos taurus (taxid: 9913)

>sp|Q9GZT8|NIF3L_HUMAN NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
           E  +  +A+CAGSG  +L+G +ADLY+TGEMSHHD LDA  +G  V+L EHS++ER FL
Sbjct: 289 ESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFL 347

Homo sapiens (taxid: 9606)

>sp|Q55E83|NIF3_DICDI Protein NIF3 homolog OS=Dictyostelium discoideum GN=nif3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 45/56 (80%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
           I +I++CAGSGG ++   KADLY+TGE++HH +LDA  +G+ V++ +HS+SER +L
Sbjct: 268 IKTISLCAGSGGSVVFNAKADLYLTGELTHHAILDACAKGSYVIVCDHSNSERDYL 323

Dictyostelium discoideum (taxid: 44689)

>sp|P53081|NIF3_YEAST NGG1-interacting factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIF3 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 112 LIKDSDLDEIMINSIAVCAGSGGELLRGKK--ADLYITGEMSHHDVLDATHRGTTVLLLE 169
           L   S  +++ I  +AVCAGSG  + +  K   DLY TGEMSHH+VL     G TV++  
Sbjct: 192 LAAPSAWNQLKIKKVAVCAGSGSGVFKQLKEDVDLYYTGEMSHHEVLKWKEMGKTVIVCN 251

Query: 170 HSDSERPFLQ 179
           HS++ER FLQ
Sbjct: 252 HSNTERGFLQ 261

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94404|NIF3_SCHPO Protein NIF3 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.12 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ 179
           I+ +++CAGSGG ++    ADLY TGE+SHH VL A  +G +V+L  HS++ER +L+
Sbjct: 189 ISKVSLCAGSGGSVVMNTDADLYFTGELSHHQVLAAMAKGISVILCGHSNTERGYLK 245

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9PPK2|Y705_CAMJE UPF0135 protein Cj0705 OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=Cj0705 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%)

Query: 112 LIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHS 171
           +++ SD  +  I  IA+C GSGG+L+    AD +++G+  +H  L+A     +++ L H 
Sbjct: 149 ILRVSDCGKKDIKRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHF 208

Query: 172 DSERPFLQ 179
           +SER F Q
Sbjct: 209 ESERYFSQ 216

Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) (taxid: 192222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
328790409	303	PREDICTED: NIF3-like protein 1-like [Api	0.333	0.201	0.622	1e-15
307197841	272	NIF3-like protein 1 [Harpegnathos saltat	0.327	0.220	0.65	1e-15
380019247	303	PREDICTED: NIF3-like protein 1-like [Api	0.333	0.201	0.606	5e-15
71480080	347	NIF3-like protein 1 [Danio rerio] gi|685	0.327	0.172	0.633	5e-15
332019250	272	NIF3-like protein 1 [Acromyrmex echinati	0.327	0.220	0.616	7e-15
195579555	289	GD24053 [Drosophila simulans] gi|1941916	0.448	0.283	0.512	7e-15
40215783	306	LD28566p [Drosophila melanogaster]	0.448	0.267	0.512	7e-15
19921430	292	CG4278 [Drosophila melanogaster] gi|1312	0.404	0.253	0.554	7e-15
307187515	272	NIF3-like protein 1 [Camponotus floridan	0.327	0.220	0.616	7e-15
195343146	289	GM18668 [Drosophila sechellia] gi|194133	0.448	0.283	0.512	8e-15

>gi|328790409|ref|XP_623811.3| PREDICTED: NIF3-like protein 1-like [Apis mellifera]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 48/61 (78%)

Query: 122 MINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFF 181
           +I ++AVCAGSG  +L+   ADLY+TGEM HHDVLDA H+GT V+L  HSDSER FL+ F
Sbjct: 217 LIKTVAVCAGSGASVLKNISADLYLTGEMLHHDVLDAIHKGTNVILTNHSDSERGFLKIF 276

Query: 182 S 182
           +
Sbjct: 277 A 277

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197841|gb|EFN78952.1| NIF3-like protein 1 [Harpegnathos saltator]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 47/60 (78%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS 182
           + S+A+CAGSG  LL+G  ADLY+TGEM HHDVLDA HRG  V+L  HSDSER FL+ F+
Sbjct: 187 VKSVALCAGSGASLLKGISADLYLTGEMLHHDVLDAVHRGAHVILTNHSDSERGFLKVFA 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019247|ref|XP_003693522.1| PREDICTED: NIF3-like protein 1-like [Apis florea]

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 47/61 (77%)

Query: 122 MINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFF 181
           +I ++AVCAGSG  +L+   ADLY+TGEM HHDVLD  H+GT V+L  HSDSER FL+ F
Sbjct: 217 LIKTVAVCAGSGASVLKNTSADLYLTGEMLHHDVLDVIHKGTNVILTNHSDSERGFLKTF 276

Query: 182 S 182
           +
Sbjct: 277 A 277

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71480080|ref|NP_001025139.1| NIF3-like protein 1 [Danio rerio] gi|68534029|gb|AAH98537.1| Zgc:110030 [Danio rerio]

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 122 MINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFF 181
           M+ ++AVCAGSG  +++G  ADLYITGEMSHH+VLDA  +GT+V+L EHS+SER FL  F
Sbjct: 261 MVKTVAVCAGSGASVIQGVTADLYITGEMSHHEVLDAVSKGTSVILSEHSNSERGFLGVF 320

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332019250|gb|EGI59759.1| NIF3-like protein 1 [Acromyrmex echinatior]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS 182
           IN+IA+CAG+G  +L+G  ADLY+TGEM HHDVLDA H+G+ V+L  HSDSER FL+ ++
Sbjct: 187 INTIALCAGAGVSILKGISADLYLTGEMLHHDVLDAVHQGSHVILTNHSDSERGFLKIYA 246

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195579555|ref|XP_002079627.1| GD24053 [Drosophila simulans] gi|194191636|gb|EDX05212.1| GD24053 [Drosophila simulans]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 53/82 (64%)

Query: 100 SIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDAT 159
           S+      S HV +      + +I S+ +CAGSG  LL+G +ADL ITGEMSHH+VL+ T
Sbjct: 164 SLQKRIKNSVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFT 223

Query: 160 HRGTTVLLLEHSDSERPFLQFF 181
           H  TTVLL  HS+SER FL  F
Sbjct: 224 HNNTTVLLCNHSNSERGFLHEF 245

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|40215783|gb|AAL39701.2| LD28566p [Drosophila melanogaster]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 53/82 (64%)

Query: 100 SIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDAT 159
           S+      S HV +      + +I S+ +CAGSG  LL+G +ADL ITGEMSHH+VL+ T
Sbjct: 178 SLQKRIRNSVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFT 237

Query: 160 HRGTTVLLLEHSDSERPFLQFF 181
           H  TTVLL  HS+SER FL  F
Sbjct: 238 HNNTTVLLCNHSNSERGFLHEF 259

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921430|ref|NP_609790.1| CG4278 [Drosophila melanogaster] gi|13123948|sp|Q9NK57.3|NIF3L_DROME RecName: Full=NIF3-like protein 1; AltName: Full=Protein anon-35F/36A gi|22946617|gb|AAF53525.2| CG4278 [Drosophila melanogaster] gi|220944580|gb|ACL84833.1| CG4278-PA [synthetic construct] gi|220954452|gb|ACL89769.1| CG4278-PA [synthetic construct]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%)

Query: 108 STHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLL 167
           S HV +      + +I S+ +CAGSG  LL+G +ADL ITGEMSHH+VL+ TH  TTVLL
Sbjct: 172 SVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFTHNNTTVLL 231

Query: 168 LEHSDSERPFLQFF 181
             HS+SER FL  F
Sbjct: 232 CNHSNSERGFLHEF 245

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187515|gb|EFN72566.1| NIF3-like protein 1 [Camponotus floridanus]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS 182
           IN++A+CAGSG  +L+   ADLY+TGEM HHD+LDA HRG  V+L  HSDSER FL+ F+
Sbjct: 187 INTVALCAGSGASVLKEVPADLYLTGEMLHHDILDAVHRGIHVILTNHSDSERGFLKIFA 246

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195343146|ref|XP_002038159.1| GM18668 [Drosophila sechellia] gi|194133009|gb|EDW54577.1| GM18668 [Drosophila sechellia]

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 53/82 (64%)

Query: 100 SIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDAT 159
           S+      S HV +      + +I S+ +CAGSG  LL+G +ADL ITGEMSHH+VL+ T
Sbjct: 164 SLQKRIKNSVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFT 223

Query: 160 HRGTTVLLLEHSDSERPFLQFF 181
           H  TTVLL  HS+SER FL  F
Sbjct: 224 HNNTTVLLCNHSNSERGFLHEF 245

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0014092	292	CG4278 [Drosophila melanogaste	0.448	0.280	0.512	4.1e-17
ZFIN|ZDB-GENE-050706-80	425	nif3l1 "NIF3 NGG1 interacting	0.344	0.148	0.625	3.7e-16
MGI|MGI:1929485	376	Nif3l1 "Ngg1 interacting facto	0.322	0.156	0.610	2.5e-15
RGD|1310329	376	Nif3l1 "NIF3 NGG1 interacting	0.322	0.156	0.610	4.1e-15
UNIPROTKB|F1NDR9	159	NIF3L1 "Uncharacterized protei	0.306	0.352	0.607	1.4e-14
UNIPROTKB|Q05B89	377	NIF3L1 "NIF3-like protein 1" [	0.322	0.156	0.593	2.5e-14
UNIPROTKB|E2RQI7	397	NIF3L1 "Uncharacterized protei	0.322	0.148	0.593	2.9e-14
UNIPROTKB|Q9GZT8	377	NIF3L1 "NIF3-like protein 1" [	0.322	0.156	0.576	4.2e-14
POMBASE|SPCC126.12	278	SPCC126.12 "NGG1 interacting f	0.311	0.205	0.491	5.6e-11
SGD|S000003189	288	NIF3 "Protein of unknown funct	0.371	0.236	0.471	8.4e-11

FB|FBgn0014092 CG4278 [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 42/82 (51%), Positives = 53/82 (64%)

Query:   100 SIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDAT 159
             S+      S HV +      + +I S+ +CAGSG  LL+G +ADL ITGEMSHH+VL+ T
Sbjct:   164 SLQKRIRNSVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFT 223

Query:   160 HRGTTVLLLEHSDSERPFLQFF 181
             H  TTVLL  HS+SER FL  F
Sbjct:   224 HNNTTVLLCNHSNSERGFLHEF 245

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-050706-80 nif3l1 "NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/64 (62%), Positives = 51/64 (79%)

Query:   118 LDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPF 177
             LD  M+ ++AVCAGSG  +++G  ADLYITGEMSHH+VLDA  +GT+V+L EHS+SER F
Sbjct:   347 LDS-MVKTVAVCAGSGASVIQGVTADLYITGEMSHHEVLDAVSKGTSVILSEHSNSERGF 405

Query:   178 LQFF 181
             L  F
Sbjct:   406 LGVF 409

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1929485 Nif3l1 "Ngg1 interacting factor 3-like 1 (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query:   120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
             E  +  +A+CAGSGG +L+G +ADLY+TGEMSHHDVLDA  +G  V+L EHS++ER FL
Sbjct:   288 ESQVKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFL 346

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

RGD|1310329 Nif3l1 "NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query:   120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
             E  +  +A+CAGSGG +L+G +ADLY+TGEMSHHDVLDA  +G  V+L EHS++ER FL
Sbjct:   288 ESPVKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFL 346

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

UNIPROTKB|F1NDR9 NIF3L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:   123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
             +   A+CAGSG  +L+G +ADLY+TGEMSHHDVLDA   G +V+L EHS++ER FL
Sbjct:    74 VKKAALCAGSGSSVLKGVEADLYLTGEMSHHDVLDAVANGISVILCEHSNTERGFL 129

GO:0005739 "mitochondrion" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q05B89 NIF3L1 "NIF3-like protein 1" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
             E  +  +A+CAGSG  +L+G  ADLY+TGEMSHHDVLDA  +G +V+L EHS++ER FL
Sbjct:   289 ESPVKVVALCAGSGSSVLQGTDADLYLTGEMSHHDVLDAASQGISVILCEHSNTERGFL 347

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RQI7 NIF3L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
             E  +  +A+CAGSG  +L+G +ADLY+TGEMSHHDVLDA  +G  V+L EHS++ER FL
Sbjct:   309 ESPVKVVALCAGSGSTVLQGAEADLYLTGEMSHHDVLDAASQGINVILCEHSNTERGFL 367

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9GZT8 NIF3L1 "NIF3-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query:   120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
             E  +  +A+CAGSG  +L+G +ADLY+TGEMSHHD LDA  +G  V+L EHS++ER FL
Sbjct:   289 ESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFL 347

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

POMBASE|SPCC126.12 SPCC126.12 "NGG1 interacting factor 3 family, implicated in transcription" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 155 (59.6 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query:   123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ 179
             I+ +++CAGSGG ++    ADLY TGE+SHH VL A  +G +V+L  HS++ER +L+
Sbjct:   189 ISKVSLCAGSGGSVVMNTDADLYFTGELSHHQVLAAMAKGISVILCGHSNTERGYLK 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=ISM

SGD|S000003189 NIF3 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 154 (59.3 bits), Expect = 8.4e-11, P = 8.4e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query:   112 LIKDSDLDEIMINSIAVCAGSGGELLRGKK--ADLYITGEMSHHDVLDATHRGTTVLLLE 169
             L   S  +++ I  +AVCAGSG  + +  K   DLY TGEMSHH+VL     G TV++  
Sbjct:   192 LAAPSAWNQLKIKKVAVCAGSGSGVFKQLKEDVDLYYTGEMSHHEVLKWKEMGKTVIVCN 251

Query:   170 HSDSERPFLQ 179
             HS++ER FLQ
Sbjct:   252 HSNTERGFLQ 261

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NK57	NIF3L_DROME	No assigned EC number	0.5540	0.4043	0.2534	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
pfam01784	237	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	7e-20
COG0327	250	COG0327, COG0327, Uncharacterized conserved protei	7e-15
TIGR00486	249	TIGR00486, YbgI_SA1388, dinuclear metal center pro	7e-11

>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)

 Score = 83.1 bits (206), Expect = 7e-20
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 116 SDLDEIMINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSD 172
            DLD+  I  +A+C GSGG L+   + K ADL ITGE+ HHD LDA  +G  ++   H  
Sbjct: 163 GDLDK-PIKKVAICGGSGGSLIEEAKAKGADLLITGELKHHDALDAKEKGIALIDAGHYA 221

Query: 173 SERPFLQ 179
           +ER  L+
Sbjct: 222 TERFGLK 228

This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown. Length = 237

>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function unknown]

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 100 SIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVL 156
            I          ++KD       I  +AVC+GSG   L     +  D YITG++SHH   
Sbjct: 148 RIKAKLGRPPLRVVKDGSE---EIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTAH 204

Query: 157 DATHRGTTVLLLEHSDSERPFLQ 179
           DA   G +V+   H  +ERP L+
Sbjct: 205 DARELGLSVIDAGHYATERPGLK 227

Length = 250

>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388 family

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 122 MINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
            +  +AV +GSG   +     +  D YITG++SHH    A   G  V+   H  +ER  L
Sbjct: 166 YVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAHLARELGLNVIDAGHYATERGGL 225

Query: 179 Q 179
           +
Sbjct: 226 R 226

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members [Unknown function, General]. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF01784	241	NIF3: NIF3 (NGG1p interacting factor 3); InterPro:	100.0
TIGR00486	249	YbgI_SA1388 dinuclear metal center protein, YbgI/S	100.0
PRK10799	247	metal-binding protein; Provisional	100.0
COG0327	250	Uncharacterized conserved protein [Function unknow	99.98
KOG4131|consensus	272		99.92

>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues

Probab=100.00  E-value=1.6e-36  Score=256.31  Aligned_cols=152  Identities=24%  Similarity=0.363  Sum_probs=122.0

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcc--cCCCC-------
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAME--KIPGS-------   79 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~--k~~~~-------   79 (183)
                      +=|||||||++|++.++...++.  ++++        |++||.|||+|.... ++|+.+.++|+-.  +....       
T Consensus        54 ~dlIItHHP~~f~~~~~~~~~~~--~~~~~~~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~~~~~~~  130 (241)
T PF01784_consen   54 ADLIITHHPLFFKPLKSLTGDDY--KGKIIEKLIKNGISVYSAHTNLDAAPG-GVNDYLAKKLGLENIKPLDPSKSGEGY  130 (241)
T ss_dssp             -SEEEESS-SSSSTSSHCHCHSH--HHHHHHHHHHTT-EEEEESHHHHHSTT-SHHHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred             CCEEEEcCchhhcCCccccccch--hhHHHHHHHHCCCEEEEecccccccCc-CHHHHHHHHhCCCCccccccccccccc
Confidence            45899999999999999888755  5554        999999999999995 9999999999722  22211       


Q ss_pred             ----Ccccc-ccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecC
Q psy18092         80 ----NPTIN-KKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGE  149 (183)
Q Consensus        80 ----~~~~~-~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGE  149 (183)
                          --..+ ..+++||++  |+.|+.+.+|+..           +.+++|+|||+|+|||+++++++   |||+|||||
T Consensus       131 g~g~i~~l~~~~s~~el~~~vk~~l~~~~vr~~g-----------~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd  199 (241)
T PF01784_consen  131 GLGRIGELPEPMSLEELAERVKEKLGLPGVRVVG-----------DPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGD  199 (241)
T ss_dssp             ECEEEEEEEEEEEHHHHHHHHHHHTTSS-EEEES-----------CTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS
T ss_pred             eeeeEeecCCCCCHHHHHHHHHHHcCCCcEEecC-----------CCCCcccEEEEEcccCccHHHHHHhCCCeEEEEcc
Confidence                11222 368888887  8899999988874           47889999999999999998766   999999999


Q ss_pred             CChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        150 MSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       150 vkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      ++||++++|.+.|+++|++|||+||++|++.|+
T Consensus       200 ~~~h~~~~a~~~g~~lI~~gH~~sE~~~~~~l~  232 (241)
T PF01784_consen  200 IKYHDAQDAKENGINLIDAGHYASERPGMEALA  232 (241)
T ss_dssp             --HHHHHHHHHCTSEEEE--HHHHGGHHHHHHH
T ss_pred             CcHHHHHHHHHCCCEEEEcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.

>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family

Probab=100.00  E-value=1.6e-35  Score=251.96  Aligned_cols=152  Identities=21%  Similarity=0.204  Sum_probs=124.4

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe-------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCc-------c
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI-------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNP-------T   82 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~-------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~-------~   82 (183)
                      +=|||||||++|+|.+.......  .+++       |++||.|||+|..- .++|+.+-+.|+-.+......       +
T Consensus        58 ~dlIitHHP~~f~~~~~~~~~~~--~~~~~~li~~~I~vy~~Ht~lD~~~-~G~n~~La~~Lgl~~~~~~~~~g~G~vg~  134 (249)
T TIGR00486        58 ADLIITHHPLIWKPLKRLIRGIK--PGRLKILLQNDISLYSAHTNLDAHD-GGNNDALARALGLENPKEFEDYGLGRVGE  134 (249)
T ss_pred             CCEEEEcCccccCCcccccCCCH--HHHHHHHHHCCCeEEEeecchhcCC-CCHHHHHHHHcCCCccccccCCCceeEEE
Confidence            34899999999999887644333  2223       99999999999998 499999999998443211111       1


Q ss_pred             c-cccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHHH
Q psy18092         83 I-NKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDVL  156 (183)
Q Consensus        83 ~-~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~l  156 (183)
                      . ...+++||++  |++|+++.+|++.           +.+++|+|||+|+|||++++.+|   |||+|||||++||+++
T Consensus       135 l~~~~~~~~~~~~vk~~l~~~~vr~~~-----------~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h~~~  203 (249)
T TIGR00486       135 FKAPIESLEEVLEIKKVLNVKPLLVVK-----------NGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAH  203 (249)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCEEEeC-----------CCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCchHHHH
Confidence            1 2457778877  8889988888875           35678999999999999988776   8999999999999999


Q ss_pred             HHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        157 DATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       157 ~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      +|+++|+++|++|||+||+++++.|+
T Consensus       204 ~A~~~gi~li~~gH~~sE~~~~~~la  229 (249)
T TIGR00486       204 LARELGLNVIDAGHYATERGGLRKLM  229 (249)
T ss_pred             HHHHCCCEEEEcCcHHHHHHHHHHHH
Confidence            99999999999999999999999886

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.

>PRK10799 metal-binding protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=245.66  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=120.5

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCccc-----
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTI-----   83 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~-----   83 (183)
                      +=|||||||++|+|.+..... .  ++++        |++||.|||+|....++.|+.+.++|+..+.....+..     
T Consensus        57 ~dlIitHHP~~~~~~~~~~~~-~--~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~~~~~~g~l  133 (247)
T PRK10799         57 ADAVIVHHGYFWKGESPVIRG-M--KRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGEL  133 (247)
T ss_pred             CCEEEECCchhccCCCccccc-h--HHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcCCceeeEEC
Confidence            348999999999998775322 2  3333        99999999999988569999999999844331111111     


Q ss_pred             -cccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHHHH
Q psy18092         84 -NKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDVLD  157 (183)
Q Consensus        84 -~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~l~  157 (183)
                       ...+++||+.  |+.|+.+...+.+           ..+++|+|||+|+|||++++.+|   |||+|||||++||++++
T Consensus       134 ~~~~s~~~l~~~vk~~l~~~~~~~~~-----------~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~h~~~~  202 (247)
T PRK10799        134 TMPVPGLELASWIEARLGRKPLWCGD-----------TGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHS  202 (247)
T ss_pred             CCCcCHHHHHHHHHHHhCCCeEEECC-----------CCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCcchHHHHH
Confidence             1456778877  8888887532222           23468999999999999988776   89999999999999999


Q ss_pred             HHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        158 ATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       158 A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |.+.|+++|++|||+||+++++.|+
T Consensus       203 A~~~gl~li~~GH~~sE~~~~~~la  227 (247)
T PRK10799        203 AREQGLHFYAAGHHATERGGIRALS  227 (247)
T ss_pred             HHHCCCeEEEcCchHHHHHHHHHHH
Confidence            9999999999999999999999875

>COG0327 Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=8e-33  Score=237.27  Aligned_cols=152  Identities=23%  Similarity=0.273  Sum_probs=125.6

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHh--cccCCC------CC
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFA--MEKIPG------SN   80 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~--~~k~~~------~~   80 (183)
                      +-|||||||+||.+.++......  +..+        |++||.|||+|... ++.|+.+.+.+.  ..+.+.      .-
T Consensus        58 ad~ii~HHplif~~~~~~~~~~~--~~~~i~~li~~~I~ly~~HtnlD~~~-~g~N~a~~~~l~~~~~~~~~~~~~g~~g  134 (250)
T COG0327          58 ADLLIVHHPLIFWPVKSLAIDGP--KGKRIKALIQNDINLYAAHTNLDAHP-EGGNDALAAALLGAEELPPFGEGLGRVG  134 (250)
T ss_pred             CCEEEEcCchhcCCCccccccch--HHHHHHHHHhCCCeEEEccccccccc-ccccHHHHHHhcCcccccccccccceEE
Confidence            34899999999999998664432  4444        99999999999998 888999887777  333222      11


Q ss_pred             ccccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHH
Q psy18092         81 PTINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDV  155 (183)
Q Consensus        81 ~~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~  155 (183)
                      ...+..++++|.+  ++.|+.+.++++.           +.++.|+|||+|+|||.+++.+|   |+|+|||||++||++
T Consensus       135 ~~~~~~~l~~l~~~i~~~l~~~~~~~~~-----------~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~  203 (250)
T COG0327         135 ELKEPTTLEELAERIKAKLGRPPLRVVK-----------DGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTA  203 (250)
T ss_pred             EeCCCCCHHHHHHHHHHHcCCCCEEEcc-----------CccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHH
Confidence            2333568888877  8888888888776           46778999999999999998875   999999999999999


Q ss_pred             HHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        156 LDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       156 l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      ++|+|+|+++|++|||+||++|++.|+
T Consensus       204 ~~a~e~gi~~i~~gH~~tE~~g~~~l~  230 (250)
T COG0327         204 HDARELGLSVIDAGHYATERPGLKALA  230 (250)
T ss_pred             HHHHHCCCeEEecCchHHHHHHHHHHH
Confidence            999999999999999999999999775

>KOG4131|consensus

Probab=99.92  E-value=9.5e-26  Score=195.10  Aligned_cols=155  Identities=32%  Similarity=0.388  Sum_probs=122.0

Q ss_pred             EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCccc------
Q psy18092         18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTI------   83 (183)
Q Consensus        18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~------   83 (183)
                      -.|+.-||+||+|.+++..+  -|+.++        |+|||-||-+|.-. +++||.+-+.++.--+.-.+.+.      
T Consensus        68 e~IvAYHP~IFr~~krIt~~--~~~e~~vi~~~~ngiavySPHtA~Daa~-~gVNdwls~gIN~~~~~p~~~t~~gp~~~  144 (272)
T KOG4131|consen   68 ESIVAYHPPIFRPLKRITKS--YPQERKVIKAIANGIAVYSPHTAVDAAG-GGVNDWLSKGINANLSRPNDPTKNGPMEE  144 (272)
T ss_pred             ceeEeecCccccchhhhccc--chHHHHHHHHHhcCceeecchhhhcccc-cchhHHHHHhhhhhhcCCccccccCCCcc
Confidence            46889999999999999988  366666        99999999999966 89999998888821121122211      


Q ss_pred             c-----------cccccccccccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhCCCcEEEecCCCh
Q psy18092         84 N-----------KKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSH  152 (183)
Q Consensus        84 ~-----------~~~L~efi~k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~AgaDvfITGEvkh  152 (183)
                      .           ..++-|++.+-+=+++.+||.-       .+...+...|++||+|+|||++++++..||+|+||||+|
T Consensus       145 ~~G~gr~~e~~~~~~~~~~l~~ik~~l~~v~val-------~~g~~~~~~i~~V~vcAgsg~svlk~~~adly~TGEmSH  217 (272)
T KOG4131|consen  145 TIGYGREEETKINLNVVEILKRIKRGLSSVRVAL-------AVGHTLESQIKKVAVCAGSGSSVLKGVDADLYITGEMSH  217 (272)
T ss_pred             cccccceeeccCcccHHHHHHHHHhcCCeEEEee-------ccCCccccceeEEEEeeccCcceeccccccEEEeccccH
Confidence            1           2245555552112667766665       333356778999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        153 HDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       153 H~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |+.++|.++|++||.++|++|||.|+..|+
T Consensus       218 H~vL~~~~~g~sVilc~HSNtERgfL~d~~  247 (272)
T KOG4131|consen  218 HDVLDAAANGISVILCEHSNTERGFLSDLC  247 (272)
T ss_pred             HHHHHHHHcCCeEEEecCCCccchhHHHHH
Confidence            999999999999999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2yyb_A	242	Hypothetical protein TTHA1606; structural genomics	4e-20
2fyw_A	267	Conserved hypothetical protein; structural genomic	4e-19
2nyd_A	370	UPF0135 protein SA1388; hypothetical protein SA138	5e-19
1nmo_A	247	Hypothetical protein YBGI; toroidal structure, str	5e-18
2gx8_A	397	NIF3-related protein; structural genomics, unknown	1e-14

>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus} Length = 242

 Score = 83.1 bits (206), Expect = 4e-20
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 122 MINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFF 181
            + ++ + +GSG  LL    ADL++TGE  H    +   RG  V+   H D+E   ++  
Sbjct: 162 HVETVILVSGSGTGLLPKVDADLFVTGEPKHSVFHETFERGLNVIYAGHYDTETFGVKAL 221

>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1 Length = 267

 Score = 80.8 bits (200), Expect = 4e-19
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 107 TSTHVLIKDSDLDEIMINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGT 163
            S  ++    D  +  I+ +A+C GSG         K AD+YITG++ +H   D    G 
Sbjct: 161 DSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGL 220

Query: 164 TVLLLEHSDSERPFLQFF 181
             L   H   E  F++  
Sbjct: 221 LALDPGHY-IEVIFVEKI 237

>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Length = 370

 Score = 82.0 bits (202), Expect = 5e-19
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 122 MINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
            I  IA+  GSG         + AD+++TG++ HHD LDA   G  ++ + H  SE    
Sbjct: 279 KIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMK 337

Query: 179 QFF 181
           +  
Sbjct: 338 EGL 340

>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Length = 247

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 122 MINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
           ++  +A C G G   +        D +ITGE+S   +  A  +G       H  +ER  +
Sbjct: 164 VVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGI 223

Query: 179 QFF 181
           +  
Sbjct: 224 RAL 226

>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Length = 397

 Score = 69.7 bits (170), Expect = 1e-14
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 122 MINSIAVCAGSGGELLRG---KKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
            +  +AV  G G + +     K AD+Y+TG+M +H   DA   G  ++   H+  E+   
Sbjct: 306 KVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHN-VEKVMK 364

Query: 179 QFF 181
           Q  
Sbjct: 365 QGV 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2yyb_A	242	Hypothetical protein TTHA1606; structural genomics	100.0
2fyw_A	267	Conserved hypothetical protein; structural genomic	100.0
1nmo_A	247	Hypothetical protein YBGI; toroidal structure, str	99.98
2nyd_A	370	UPF0135 protein SA1388; hypothetical protein SA138	99.98
2gx8_A	397	NIF3-related protein; structural genomics, unknown	99.97
3rxy_A	278	NIF3 protein; structural genomics, PSI-biology, mi	99.72

>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-35  Score=251.01  Aligned_cols=149  Identities=20%  Similarity=0.220  Sum_probs=122.8

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhh-hHHHHHHHHHhcccCC----CCCc-c
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARD-TVSRVVTRLFAMEKIP----GSNP-T   82 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~-~~~~~~~~~~~~~k~~----~~~~-~   82 (183)
                      +=|||||||++| +.+..   ..+|++++        |++||.|||+|..- + ++|+.+-++|+-....    |--- .
T Consensus        58 adlIitHHp~~f-~~~~~---~~~~~~~~i~~li~~~I~ly~~Ht~lD~~~-~~G~n~~La~~Lgl~~~~~l~~G~ig~l  132 (242)
T 2yyb_A           58 VDFLIVHHGLFW-GKPFP---IVGHHKRRLETLFQGGINLYAAHLPLDAHE-EVGNNFVLARELGLVDLTPWDVGVKGRF  132 (242)
T ss_dssp             CSEEEEEECSCS-SCCCC---SCHHHHHHHHHHHHTTCEEEECSHHHHHCT-TTCHHHHHHHTTTCCSCCCCSTTCCCCC
T ss_pred             CCEEEECCCcCc-Ccccc---cccHHHHHHHHHHHCCCeEEEeccHHhcCC-CcCHHHHHHHHcCCCCCccceeEEEEEe
Confidence            348999999999 88877   23345555        99999999999876 7 9999999999822211    2111 1


Q ss_pred             ccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhCCCcEEEecCCChhHHHHHHH
Q psy18092         83 INKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATH  160 (183)
Q Consensus        83 ~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~AgaDvfITGEvkhH~~l~A~e  160 (183)
                      +...+++||.+  |+.|+ +.+|+..           +.+++|+|||+|+|||++++++||||+|||||++||++++|++
T Consensus       133 ~~~~t~~~l~~~vk~~l~-~~vr~~g-----------~~~~~i~~VAv~~GsG~~~~~~agaD~~iTGd~~~h~~~~A~e  200 (242)
T 2yyb_A          133 PQPTPLLQVADRLGQLTG-MQPLVHQ-----------GGLDHVETVILVSGSGTGLLPKVDADLFVTGEPKHSVFHETFE  200 (242)
T ss_dssp             CCCSCBSTHHHHHHHTTS-SCCEEEE-----------SSCSBCCCEEEECSSCGGGGGGCCSSEEEESCCCGGGHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHcc-cCeEEec-----------CCCCceeEEEEEcCCCHHHHHHcCCCEEEEecCCHHHHHHHHH
Confidence            22577888887  88898 7777753           4566799999999999999999999999999999999999999


Q ss_pred             cCCeEEEeCCccchHHHHhhcc
Q psy18092        161 RGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       161 ~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      +|+++|++|||+||++|++.|+
T Consensus       201 ~gi~~i~~GH~~tE~~~~~~l~  222 (242)
T 2yyb_A          201 RGLNVIYAGHYDTETFGVKALA  222 (242)
T ss_dssp             TTCEEEECCHHHHTTHHHHHHH
T ss_pred             CCCeEEECCcHHHHHHHHHHHH
Confidence            9999999999999999998875

>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1

Probab=100.00  E-value=6.1e-35  Score=249.06  Aligned_cols=155  Identities=19%  Similarity=0.251  Sum_probs=122.4

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhc--ccCCCC----Cc-
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAM--EKIPGS----NP-   81 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~--~k~~~~----~~-   81 (183)
                      +=|||||||++|++++.....  +|++++        |++||.|||+|..- +++|+.+-++|+-  .+....    .. 
T Consensus        60 adlIitHHP~~f~~~~~~~~~--~~~~~~i~~li~~~I~lya~Ht~lD~~~-~G~n~~La~~Lgl~~~~~l~~~~~~~g~  136 (267)
T 2fyw_A           60 VDLIIVKHAPIFRPIKDLLAS--RPQNQIYIDLIKHDIAVYVSHTNIDIVE-NGLNDWFCQMLGIEETTYLQETGPERGI  136 (267)
T ss_dssp             CSEEEESSCSCCSCCCCCCTT--SHHHHHHHHHHHTTCEEEECSHHHHHST-TSHHHHHHHHHTCEEEEEEEEEETTEEE
T ss_pred             CCEEEECCccccCCccccccC--chHHHHHHHHHHCCCeEEEeeccccccC-CCHHHHHHHHcCCCcccccccCCCCCCe
Confidence            348999999999999887533  335554        99999999999776 6999999999982  221110    00 


Q ss_pred             ----cccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCCh
Q psy18092         82 ----TINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSH  152 (183)
Q Consensus        82 ----~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkh  152 (183)
                          +....+++||++  |+.|+++.+|+...       ..++.+++|+|||+|+|||++++++|   |||+|||||++|
T Consensus       137 G~ig~l~~~t~~el~~~vk~~l~~~~vr~~~~-------~~g~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~~ITGd~~~  209 (267)
T 2fyw_A          137 GRIGNIQPQTFWELAQQVKQVFDLDSLRMVHY-------QEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYY  209 (267)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHTTCSCCEEECS-------CTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSEEEESCCCH
T ss_pred             EEEEEeccCCHHHHHHHHHHHcCCCeEEEEec-------cCCCCCCceeEEEEEcCCCHHHHHHHHHcCCCEEEEccCcH
Confidence                012456777777  88898888887620       00245667999999999999998876   999999999999


Q ss_pred             hHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        153 HDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       153 H~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |++++|.++|+++|++||| ||++|++.|+
T Consensus       210 h~~~~A~e~gi~~i~~GH~-tE~~~~~~l~  238 (267)
T 2fyw_A          210 HTAQDMLSDGLLALDPGHY-IEVIFVEKIA  238 (267)
T ss_dssp             HHHHHHHHTTCEEEECCGG-GGGHHHHHHH
T ss_pred             HHHHHHHHCCCeEEECCcH-HHHHHHHHHH
Confidence            9999999999999999999 9999998875

>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A

Probab=99.98  E-value=3.4e-34  Score=242.38  Aligned_cols=150  Identities=13%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             EEEeeeCCcccc-CCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccC--C-C--CCcc
Q psy18092         17 VCLLSTRPRVCF-PPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKI--P-G--SNPT   82 (183)
Q Consensus        17 ~~~i~t~~~~~f-~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~--~-~--~~~~   82 (183)
                      +=|||||||++| ++.+...    ++++++        |++||.|||+|..-..++|+.+-++|+-...  . |  ---+
T Consensus        57 adlIitHHP~~f~~~~~~i~----~~~~~~i~~li~~~I~ly~~HtnlD~~~~~G~n~~La~~Lgl~~~~~~~g~G~ig~  132 (247)
T 1nmo_A           57 ADAVIVHHGYFWKGESPVIR----GMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGE  132 (247)
T ss_dssp             CSEEEEEECSCCTTSCCCCC----THHHHHHHHHHHTTCEEEECCHHHHHCTTTSHHHHHHHHHTEEEEEEEETTEEEEE
T ss_pred             CCEEEECCchhccCCCcccc----chHHHHHHHHHHCCCEEEEeeechhhCCCCCHHHHHHHHcCCCCccccCCeEEEEE
Confidence            348999999999 7776643    234443        9999999999998744999999999982211  1 1  1111


Q ss_pred             -ccccccccccc--ccccCcceeEeecccceeEEeecCCC-CCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHH
Q psy18092         83 -INKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLD-EIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDV  155 (183)
Q Consensus        83 -~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~-~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~  155 (183)
                       ....+++||.+  |+.|+.+ +++.           ++. +++|+|||+|+|||++++++|   |||+|||||++||++
T Consensus       133 l~~~~t~~~l~~~vk~~l~~~-~~~~-----------g~~~~~~i~~VAv~~GsG~~~~~~a~~~gaD~~iTGd~~~h~~  200 (247)
T 1nmo_A          133 LTMPVPGLELASWIEARLGRK-PLWC-----------GDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTI  200 (247)
T ss_dssp             EEEEECHHHHHHHHHHHHTSC-CEEE-----------CTTSCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHH
T ss_pred             eCCCCcHHHHHHHHHHHcCCC-eEEE-----------CCCCcCccCEEEEECCCcHHHHHHHHHcCCCEEEEcCccHHHH
Confidence             12467777777  7778765 3333           233 467999999999999999877   999999999999999


Q ss_pred             HHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        156 LDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       156 l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      ++|+++|+++|++|||+||++|++.|+
T Consensus       201 ~~a~e~gi~~i~~GH~~tE~~~~~~l~  227 (247)
T 1nmo_A          201 HSAREQGLHFYAAGHHATERGGIRALS  227 (247)
T ss_dssp             HHHHHTTCEEEECCHHHHTSHHHHHHH
T ss_pred             HHHHHCCCeEEEcCCHHHHHHHHHHHH
Confidence            999999999999999999999998875

>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*

Probab=99.98  E-value=1.4e-33  Score=252.60  Aligned_cols=149  Identities=19%  Similarity=0.264  Sum_probs=118.5

Q ss_pred             EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHh--cccCCCC--------
Q psy18092         18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFA--MEKIPGS--------   79 (183)
Q Consensus        18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~--~~k~~~~--------   79 (183)
                      =|||||||++|+|+++....  +| +++        |++||.|||+|..- +++||.+-+.|+  ..+....        
T Consensus        63 dlIItHHPlif~~~k~i~~~--~~-~r~i~~li~~~Ialya~HTnlD~~~-~GvNd~LA~~Lgl~~~~~l~~~~~~~~kl  138 (370)
T 2nyd_A           63 NTIISHHPLIFKGVTSLKAN--GY-GLIIRKLIQHDINLIAMHTNLDVNP-YGVNMMLAKVMGLKNISIINNQQDVYYKV  138 (370)
T ss_dssp             CEEEESSCSSCSCCSCCCSS--TH-HHHHHHHHHTTCEEEECCHHHHTST-TSHHHHHHHHTTCEEEEECSEEEEEEEEE
T ss_pred             CEEEECCCcccCCccccCcC--CH-HHHHHHHHHCCCeEEEeechhhccC-CcHHHHHHHHcCCCcccccCcccccccee
Confidence            48999999999999977432  34 444        99999999999987 699999999997  1111110        


Q ss_pred             ----------------------------------------------C---------------------------------
Q psy18092         80 ----------------------------------------------N---------------------------------   80 (183)
Q Consensus        80 ----------------------------------------------~---------------------------------   80 (183)
                                                                    |                                 
T Consensus       139 ~v~vP~~~~~~v~~al~~aGag~ig~Y~~csf~~~G~G~F~p~~~a~P~ig~~g~~~~v~e~rie~i~~~~~~~~v~~al  218 (370)
T 2nyd_A          139 QTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQLI  218 (370)
T ss_dssp             C---------------------------------------------------------------CEEECSTHHHHHHHHH
T ss_pred             EEecchhhHHHHHHHHHhcccccccccccceecccccceeccccccCCccccccccccccceEEEEEechhhHHHHHHHH
Confidence                                                          0                                 


Q ss_pred             ----------------------c-----c-ccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEe
Q psy18092         81 ----------------------P-----T-INKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCA  130 (183)
Q Consensus        81 ----------------------~-----~-~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcs  130 (183)
                                            .     + +...+++||++  |+.|+++.+|+.           ++.+++|+|||+|+
T Consensus       219 ~~~hpyee~ayd~~~l~~~~~~GlGriG~L~~p~tl~~~~~~vk~~l~~~~vr~~-----------g~~~~~I~~VAvc~  287 (370)
T 2nyd_A          219 KQYHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFV-----------GESNQKIKRIAIIG  287 (370)
T ss_dssp             CC-----CCCCCEEEEEEEEEEESCEEEEEEEEEEHHHHHHHHHHHTTCSCCEEE-----------SCTTCEEEEEEECC
T ss_pred             HhhCCccccccccccccccCCCCeEEEEEcCCCCCHHHHHHHHHHHcCCCceEEe-----------cCCCCcccEEEEEc
Confidence                                  0     0 01245555665  777777766665           35677899999999


Q ss_pred             CCchhhhhhC---CCcEEEecCCChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        131 GSGGELLRGK---KADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       131 GSG~s~i~~A---gaDvfITGEvkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |||++++.+|   |||+|||||++||++++|.++|+++||+|||+|| ++++.|+
T Consensus       288 GsG~~~i~~a~~~gaDvyITGD~~~H~~~~A~~~gi~vid~GH~~tE-~~~~~l~  341 (370)
T 2nyd_A          288 GSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHYSEY-VMKEGLK  341 (370)
T ss_dssp             SCCTTSHHHHHHTTCSEEEESCCCHHHHHHHHHTTCCEEECCGGGGG-GHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCEEEeCCccHHHHHHHHHCCCcEEEcCchHHH-HHHHHHH
Confidence            9999998776   9999999999999999999999999999999999 9998775

>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1

Probab=99.97  E-value=1.5e-33  Score=254.69  Aligned_cols=150  Identities=17%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhc--ccCCC---------
Q psy18092         18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAM--EKIPG---------   78 (183)
Q Consensus        18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~--~k~~~---------   78 (183)
                      =|||||||++|+|+|+....  +|++++        |++||.|||+|..- +++||.+-++|+-  .+...         
T Consensus        87 dlIItHHPlif~~lk~i~~~--~~~~r~i~~li~~~Iavya~HTnlD~~~-~GvNd~LA~~LGl~~~~~L~~~~~~~~~K  163 (397)
T 2gx8_A           87 NVIIAHHPLIFNPLKAIHTD--KAYGKIIEKCIKNDIAIYAAHTNVDVAK-GGVNDLLAEALGLQNTEVLAPTYAEEMKK  163 (397)
T ss_dssp             CEEEESSCSCCSCCSCCCTT--SHHHHHHHHHHHTTCEEEECCHHHHHST-TSHHHHHHHHTTCEEEEEEEEEEEEEEEE
T ss_pred             CEEEECCccccCCccccCcC--cHHHHHHHHHHHCCCeEEEeechhhcCC-CCHHHHHHHHcCCCcccccCcccccccce
Confidence            48999999999999998644  346665        99999999999977 7999999999971  11000         


Q ss_pred             ----------------------------------------------CCc-------------------------------
Q psy18092         79 ----------------------------------------------SNP-------------------------------   81 (183)
Q Consensus        79 ----------------------------------------------~~~-------------------------------   81 (183)
                                                                    .|+                               
T Consensus       164 l~v~vp~~~~~~v~~al~~aGag~ig~y~~csf~~~G~G~F~p~~~a~P~iG~~g~~~~v~e~rie~i~p~~~~~~v~~a  243 (397)
T 2gx8_A          164 VVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKA  243 (397)
T ss_dssp             EEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred             eeEeccchhhHHHHHHhhhccccccccccccccccccceeeccccCCCCccCCcCcccccceeEEEEEecHHHHHHHHHH
Confidence                                                          000                               


Q ss_pred             -------------------------------cccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEE
Q psy18092         82 -------------------------------TINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAV  128 (183)
Q Consensus        82 -------------------------------~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAI  128 (183)
                                                     .+...++.+|++  |+.|+++.+|+.           ++.+++|+|||+
T Consensus       244 l~~~HPyee~ayd~~~l~~~~~~~GlGriG~L~~p~tl~~f~~~vk~~L~~~~vr~~-----------g~~~~~I~rVAv  312 (397)
T 2gx8_A          244 MVTAHPYEEVAYDVYPLDNKGETLGLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVV-----------GKLDDKVRKVAV  312 (397)
T ss_dssp             HHHHSSSSSCCEEEEEEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEE-----------SCTTSEEEEEEE
T ss_pred             HHHhCCcccccccccccccccccCCeEEEEEcCCCCCHHHHHHHHHHHcCCCceEEE-----------CCCCCceeEEEE
Confidence                                           001244555555  667777666665           456778999999


Q ss_pred             EeCCchhhhhhC---CCcEEEecCCChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        129 CAGSGGELLRGK---KADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       129 csGSG~s~i~~A---gaDvfITGEvkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |+|||++++.+|   |||+|||||++||++++|.++|+++||+|||+|| ++++.|+
T Consensus       313 c~GSG~~~i~~A~~~gaDvyITGD~~~H~a~dA~e~Gi~vId~GH~~sE-~~~~~l~  368 (397)
T 2gx8_A          313 LGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEK-VMKQGVQ  368 (397)
T ss_dssp             EEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHHHTCEEEECCGGGGG-HHHHHHH
T ss_pred             EcCCcHHHHHHHHHCCCCEEEecCCcHHHHHHHHHCCCcEEEcCchHHH-HHHHHHH
Confidence            999999999776   9999999999999999999999999999999999 9998775

>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}

Probab=99.72  E-value=1.5e-18  Score=151.15  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=88.3

Q ss_pred             eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCccc--ccccccccccccccCcceeEeecccceeEEeecCCCCCcc
Q psy18092         46 LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTI--NKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMI  123 (183)
Q Consensus        46 i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~L~efi~k~~f~v~~irv~n~s~~~~ir~~~~~~~~I  123 (183)
                      +.--++||--|--.+..|.+++.+.++..+--...++.  -..+++||-....  .+.+.+            ++.++++
T Consensus       130 ~p~m~~H~paD~~~~~~l~~~~~~~~~~~~p~~t~~dvi~~L~~ipEy~~a~~--~p~I~~------------g~~~~~v  195 (278)
T 3rxy_A          130 MPFLNIHLPLDEVGRRIMVKTIQEAVEPLGDEARVQDAIDALMTLPEFAGAAT--RIMVPV------------GAVDQPL  195 (278)
T ss_dssp             CCEEECCHHHHHHHHHHHHHHHHHHHGGGGGGCBHHHHHHHHTTSHHHHSCSS--CCEEEE------------SCTTSBC
T ss_pred             CcceecCcchHHHHHHHHHHHHhhhhhccCccchHHHHHHHHHhCchhhhcCC--CCEEEe------------CCCCCcC
Confidence            88899999999888666666665544322210211111  1445556644222  233333            4578899


Q ss_pred             cEEEEEeCCch----hhhhhC---CCcEEEecCCChhHH-HHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        124 NSIAVCAGSGG----ELLRGK---KADLYITGEMSHHDV-LDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       124 ~rVAIcsGSG~----s~i~~A---gaDvfITGEvkhH~~-l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      +||||++|+|.    +.++++   |+|+|||||++|+.+ ..|.|.|+++|.+|||+||.+|+++|+
T Consensus       196 gkIaV~~GgGtsG~~~~i~~a~~~GvDt~ITGe~~~~~~~~~A~E~ginVI~AGHyATEt~Gv~aL~  262 (278)
T 3rxy_A          196 GKIAVVHGAGTNGGYAVARAYFDHGVRTVLYIHIAPEEAERLRREGGGNLIVTGHIASDLVGINRYV  262 (278)
T ss_dssp             CSEEECCSSSSCCHHHHHHHHHHTTCCEEEESCCCHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCCcHHHHHHHHHcCCCEEEEecCchHHHHHHHHHcCCeEEEeccchHhHHHHHHHH
Confidence            99999999554    446655   999999999999999 999999999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2gx8a1	370	c.135.1.1 (A:4-373) Nif3-related protein BC4286 {B	2e-15
d1nmpa_	247	c.135.1.1 (A:) Hypothetical protein YbgI {Escheric	3e-14
d2fywa1	265	c.135.1.1 (A:1-265) Hypothetical protein SP1609 {S	5e-11

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Length = 370

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 87  KLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELL---RGKKAD 143
            L        F   +    +     ++   D     +  +AV  G G + +   + K AD
Sbjct: 247 YLQEEMTLGQFAEHVKQSLDVKGARVVGKLD---DKVRKVAVLGGDGNKYINQAKFKGAD 303

Query: 144 LYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFF 181
           +Y+TG+M +H   DA   G  ++   H+  E+   Q  
Sbjct: 304 VYVTGDMYYHVAHDAMMLGLNIVDPGHN-VEKVMKQGV 340

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

 Score = 66.6 bits (162), Expect = 3e-14
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 46  LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVA 105
           ++ +      D       +  +  L  +  +    P +   +L     G      I    
Sbjct: 91  INLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARL 150

Query: 106 NTSTHVLIKDSDLDEIMINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRG 162
                           ++  +A C G G   +        D +ITGE+S   +  A  +G
Sbjct: 151 GRKPLWCGDT---GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQG 207

Query: 163 TTVLLLEHSDSERPFLQ 179
                  H  +ER  ++
Sbjct: 208 LHFYAAGHHATERGGIR 224

>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Length = 265

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein SP1609
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 107 TSTHVLIKDSDLDEIMINSIAVCAGSGGELLR---GKKADLYITGEMSHHDVLDATHRGT 163
            S  ++    D  +  I+ +A+C GSG    +    K AD+YITG++ +H   D    G 
Sbjct: 159 DSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGL 218

Query: 164 TVLLLEHSDSERPFLQ 179
             L   H   E  F++
Sbjct: 219 LALDPGHY-IEVIFVE 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1nmpa_	247	Hypothetical protein YbgI {Escherichia coli [TaxId	100.0
d2fywa1	265	Hypothetical protein SP1609 {Streptococcus pneumon	100.0
d2gx8a1	370	Nif3-related protein BC4286 {Bacillus cereus [TaxI	100.0
d1nmpa_	247	Hypothetical protein YbgI {Escherichia coli [TaxId	81.18

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-36  Score=250.63  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=124.2

Q ss_pred             EEeeeCCccccCCCCcceecCCCCCCCe-------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCc------ccc
Q psy18092         18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI-------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNP------TIN   84 (183)
Q Consensus        18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~-------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~------~~~   84 (183)
                      =|||||||++|++++....++.  .+.+       |++||.|||+|.....++++.+.+.+......-..+      ...
T Consensus        58 dlIItHHP~~f~~~~~~~~~~~--~~~i~~lik~~I~vy~~Htn~D~~~~~G~~~~La~~lg~~~~~~~~~~~~~~~l~~  135 (247)
T d1nmpa_          58 DAVIVHHGYFWKGESPVIRGMK--RNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTM  135 (247)
T ss_dssp             SEEEEEECSCCTTCCCCCCHHH--HHHHHHHHHTTCEEEECCHHHHHCTTTSHHHHHHHHTTEEEEEEEETTEEEEEEEE
T ss_pred             CEEEECCccccCCCCccccCcc--hHHHHHHHHCCcceEEccCCcccccccchHHHHHHHhhhccccccccccccccccC
Confidence            4899999999999987665433  2222       999999999999876799999999998332211111      122


Q ss_pred             ccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHHHHHH
Q psy18092         85 KKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDVLDAT  159 (183)
Q Consensus        85 ~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~l~A~  159 (183)
                      ..++.||..  ++.|+.+.+++..           +.+++|+|||+|+|||++++.+|   |||+|||||++||++++|.
T Consensus       136 ~~~~~el~~~vk~~l~~~~~~~~~-----------~~~~~v~~Vai~~GsG~s~~~~a~~~gaD~~ITGd~k~h~~~~A~  204 (247)
T d1nmpa_         136 PVPGLELASWIEARLGRKPLWCGD-----------TGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAR  204 (247)
T ss_dssp             EECHHHHHHHHHHHHTSCCEEECT-----------TCCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHhCCCceEecC-----------CCCceeeEEEEEeCCChHHHHHHHhcCCCEEEecCCChHHHHHHH
Confidence            567777777  7888887766554           56788999999999999998876   8999999999999999999


Q ss_pred             HcCCeEEEeCCccchHHHHhhcc
Q psy18092        160 HRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       160 e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      ++|+++|++|||+||++|++.|+
T Consensus       205 ~~gl~lI~~GH~~sE~~g~~~la  227 (247)
T d1nmpa_         205 EQGLHFYAAGHHATERGGIRALS  227 (247)
T ss_dssp             HTTCEEEECCHHHHTHHHHHHHH
T ss_pred             HcCCEEEEeCcHHHHHHHHHHHH
Confidence            99999999999999999999886

>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein SP1609
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=2e-35  Score=249.75  Aligned_cols=155  Identities=21%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccC--CCCCc-----
Q psy18092         17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKI--PGSNP-----   81 (183)
Q Consensus        17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~--~~~~~-----   81 (183)
                      +=|||||||++|++.++...++.  ++++        |++||.|||+|..- +++|+.+.++|+..+.  .....     
T Consensus        58 adlIItHHp~~f~~~~~~~~~~~--~~~~~~~lik~~I~vy~~Ht~lD~~~-~G~n~~la~~Lgl~~~~~~~~~~~~~g~  134 (265)
T d2fywa1          58 VDLIIVKHAPIFRPIKDLLASRP--QNQIYIDLIKHDIAVYVSHTNIDIVE-NGLNDWFCQMLGIEETTYLQETGPERGI  134 (265)
T ss_dssp             CSEEEESSCSCCSCCCCCCTTSH--HHHHHHHHHHTTCEEEECSHHHHHST-TSHHHHHHHHHTCEEEEEEEEEETTEEE
T ss_pred             CCEEEecCCcceeccccccCCCh--HHHHHHHHHhCCCeEEEeccchhhcc-CcHHHHHHHHhCCcccccccccccccce
Confidence            34899999999999988776554  4443        99999999999865 8999999999983322  11110     


Q ss_pred             ----cccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCCh
Q psy18092         82 ----TINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSH  152 (183)
Q Consensus        82 ----~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkh  152 (183)
                          .....++.|+.+  |+.|+.+.+|++..       ..++.+++|+|||+|+|||++++++|   |||+|||||++|
T Consensus       135 g~ig~~~~~t~~el~~~ik~~l~~~~vr~~~~-------~~~~~~~~i~~Vai~~GsG~~~i~~a~~~g~D~~ITGe~k~  207 (265)
T d2fywa1         135 GRIGNIQPQTFWELAQQVKQVFDLDSLRMVHY-------QEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYY  207 (265)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHTTCSCCEEECS-------CTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSEEEESCCCH
T ss_pred             eEEeccccccHHHHHHHHHHhcCCCceEEEec-------cCCCcCCcccEEEEECCCchhhhhhHhhcCCCEEEECCcCc
Confidence                112346777776  88899999888742       11456778999999999999999876   999999999999


Q ss_pred             hHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        153 HDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       153 H~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |++++|.+.|+++|++||| ||++|++.|+
T Consensus       208 h~~~~a~~~gi~li~~GH~-tE~~~~~~l~  236 (265)
T d2fywa1         208 HTAQDMLSDGLLALDPGHY-IEVIFVEKIA  236 (265)
T ss_dssp             HHHHHHHHTTCEEEECCGG-GGGHHHHHHH
T ss_pred             HHHHHHHhcCCEEEECCcc-hhHHHHHHHH
Confidence            9999999999999999999 9999998864

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=4e-35  Score=260.17  Aligned_cols=150  Identities=19%  Similarity=0.287  Sum_probs=122.5

Q ss_pred             EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhc--ccCC----------
Q psy18092         18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAM--EKIP----------   77 (183)
Q Consensus        18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~--~k~~----------   77 (183)
                      =|||||||++|+|++....+..  ++++        |++||.|||+|... +++||.+-+.|+.  .|+.          
T Consensus        60 dlIItHHPl~f~~~k~l~~~~~--~~~~~~~li~~~I~vys~HTnlD~~~-~G~nd~La~~Lgl~~~~~l~~~~~~~~~~  136 (370)
T d2gx8a1          60 NVIIAHHPLIFNPLKAIHTDKA--YGKIIEKCIKNDIAIYAAHTNVDVAK-GGVNDLLAEALGLQNTEVLAPTYAEEMKK  136 (370)
T ss_dssp             CEEEESSCSCCSCCSCCCTTSH--HHHHHHHHHHTTCEEEECCHHHHHST-TSHHHHHHHHTTCEEEEEEEEEEEEEEEE
T ss_pred             CEEEECCCCCcCCcccccCCCc--hhHHHHHHHHCCCeEEEeccchhccC-CcHHHHHHHHhCCCccccccccccccccc
Confidence            4899999999999998766544  6655        99999999999888 8999999999971  1110          


Q ss_pred             ---------------------------------------------CCCc-------------------------------
Q psy18092         78 ---------------------------------------------GSNP-------------------------------   81 (183)
Q Consensus        78 ---------------------------------------------~~~~-------------------------------   81 (183)
                                                                   +.++                               
T Consensus       137 ~~~~~p~~~~~~~~~~~~~agag~ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~a  216 (370)
T d2gx8a1         137 VVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKA  216 (370)
T ss_dssp             EEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred             eEEEeChhhhhhhhhcchhcCCCcccccccccccccCcccccCCCCCCCccCcCCceeecchhheeeechHHHHHHHHHH
Confidence                                                         0010                               


Q ss_pred             -------------------------------cccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEE
Q psy18092         82 -------------------------------TINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAV  128 (183)
Q Consensus        82 -------------------------------~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAI  128 (183)
                                                     .....+|+||+.  |+.|+++.+|+.           ++.++.|+|||+
T Consensus       217 l~~ahpy~~~~~~~~~~~~~~~~~G~Grig~l~~p~~l~~~~~~vk~~l~~~~vr~~-----------g~~~~~I~~VAv  285 (370)
T d2gx8a1         217 MVTAHPYEEVAYDVYPLDNKGETLGLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVV-----------GKLDDKVRKVAV  285 (370)
T ss_dssp             HHHHSSSSSCCEEEEEEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEE-----------SCTTSEEEEEEE
T ss_pred             HHHhCCcchhhhhhccccccccccCcceEEEeCCcccHHHHHHHHHHHcCCCeEEEe-----------CCCCCceeEEEE
Confidence                                           001346677776  788888887776           467889999999


Q ss_pred             EeCCchhhhhhC---CCcEEEecCCChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092        129 CAGSGGELLRGK---KADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS  182 (183)
Q Consensus       129 csGSG~s~i~~A---gaDvfITGEvkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~  182 (183)
                      |+|||++++.+|   |||+|||||++||++++|.++|+++|++||| ||++|++.|+
T Consensus       286 c~GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA~~~gi~lId~GH~-sE~~~~~~l~  341 (370)
T d2gx8a1         286 LGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHN-VEKVMKQGVQ  341 (370)
T ss_dssp             EEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHHHTCEEEECCGG-GGGHHHHHHH
T ss_pred             EccccHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHcCCEEEECCch-hhHHHHHHHH
Confidence            999999999876   8999999999999999999999999999997 9999998775

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=1.3  Score=34.59  Aligned_cols=48  Identities=15%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             CcccEEEEEeCCchhhhhhC---CCcEEEec-------------CCChhHHHHHHHcCCeEEEe
Q psy18092        121 IMINSIAVCAGSGGELLRGK---KADLYITG-------------EMSHHDVLDATHRGTTVLLL  168 (183)
Q Consensus       121 ~~I~rVAIcsGSG~s~i~~A---gaDvfITG-------------EvkhH~~l~A~e~Gi~lId~  168 (183)
                      ++|+||++|-=.-.+.+++|   |+|++||=             +..+-....+.+++++++.+
T Consensus        33 ~~V~kI~v~lD~t~~vi~~A~~~g~dlIItHHP~~f~~~~~~~~~~~~~~i~~lik~~I~vy~~   96 (247)
T d1nmpa_          33 ETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW   96 (247)
T ss_dssp             SBCCEEEEEEECCHHHHHHHHHTTCSEEEEEECSCCTTCCCCCCHHHHHHHHHHHHTTCEEEEC
T ss_pred             cccCEEEEEEcCCHHHHHHHHHCCCCEEEECCccccCCCCccccCcchHHHHHHHHCCcceEEc
Confidence            57999999999999888887   99999871             11222345567889988876